Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313680 | XP_003593734.1 | 97.440 | 586 | 11 | 1 | 1 | 586 | 1 | 582 | 0.0 | 1178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313680 | sp|P51850|PDC1_PEA | 94.098 | 593 | 28 | 2 | 1 | 586 | 1 | 593 | 0.0 | 1130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0313680 | -0.885467 | 7.927425e-72 | -8.615850e-47 |
| Msa0025090 | Msa0313680 | -0.833879 | 4.137133e-56 | -8.615850e-47 |
| Msa0034800 | Msa0313680 | -0.802470 | 5.526113e-49 | -8.615850e-47 |
| Msa0036560 | Msa0313680 | -0.832602 | 8.609108e-56 | -8.615850e-47 |
| Msa0071640 | Msa0313680 | 0.811933 | 5.464116e-51 | -8.615850e-47 |
| Msa0072590 | Msa0313680 | -0.818412 | 1.986579e-52 | -8.615850e-47 |
| Msa0083200 | Msa0313680 | -0.822622 | 2.146792e-53 | -8.615850e-47 |
| Msa0106810 | Msa0313680 | -0.839939 | 1.173415e-57 | -8.615850e-47 |
| Msa0139280 | Msa0313680 | -0.842398 | 2.649988e-58 | -8.615850e-47 |
| Msa0146570 | Msa0313680 | -0.802924 | 4.453894e-49 | -8.615850e-47 |
| Msa0153290 | Msa0313680 | -0.839020 | 2.033834e-57 | -8.615850e-47 |
| Msa0172110 | Msa0313680 | -0.820876 | 5.439726e-53 | -8.615850e-47 |
| Msa0173260 | Msa0313680 | 0.837618 | 4.673292e-57 | -8.615850e-47 |
| Msa0174800 | Msa0313680 | -0.814236 | 1.707065e-51 | -8.615850e-47 |
| Msa0176610 | Msa0313680 | -0.847384 | 1.196550e-59 | -8.615850e-47 |
| Msa0192890 | Msa0313680 | 0.984253 | 5.018503e-160 | -8.615850e-47 |
| Msa0196530 | Msa0313680 | 0.820978 | 5.153475e-53 | -8.615850e-47 |
| Msa0198140 | Msa0313680 | -0.807179 | 5.734515e-50 | -8.615850e-47 |
| Msa0206600 | Msa0313680 | -0.803311 | 3.703112e-49 | -8.615850e-47 |
| Msa0207990 | Msa0313680 | -0.801846 | 7.426339e-49 | -8.615850e-47 |
| Msa0218480 | Msa0313680 | -0.808843 | 2.537926e-50 | -8.615850e-47 |
| Msa0218590 | Msa0313680 | -0.809983 | 1.445052e-50 | -8.615850e-47 |
| Msa0226580 | Msa0313680 | -0.819133 | 1.362805e-52 | -8.615850e-47 |
| Msa0235020 | Msa0313680 | 0.972687 | 3.559871e-135 | -8.615850e-47 |
| Msa0238420 | Msa0313680 | 0.843734 | 1.167711e-58 | -8.615850e-47 |
| Msa0242730 | Msa0313680 | 0.806979 | 6.321640e-50 | -8.615850e-47 |
| Msa0258280 | Msa0313680 | -0.825592 | 4.310619e-54 | -8.615850e-47 |
| Msa0261200 | Msa0313680 | -0.806572 | 7.707302e-50 | -8.615850e-47 |
| Msa0266380 | Msa0313680 | -0.808805 | 2.585250e-50 | -8.615850e-47 |
| Msa0273420 | Msa0313680 | 0.977880 | 1.129911e-144 | -8.615850e-47 |
| Msa0281010 | Msa0313680 | 0.810574 | 1.077324e-50 | -8.615850e-47 |
| Msa0283230 | Msa0313680 | 0.800044 | 1.733744e-48 | -8.615850e-47 |
| Msa0313680 | Msa0315820 | -0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0313680 | Msa0320180 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0313680 | Msa0341860 | -0.810044 | 1.401723e-50 | -8.615850e-47 |
| Msa0313680 | Msa0370350 | -0.800069 | 1.713423e-48 | -8.615850e-47 |
| Msa0313680 | Msa0375500 | 0.827699 | 1.354497e-54 | -8.615850e-47 |
| Msa0313680 | Msa0384220 | 0.835348 | 1.767729e-56 | -8.615850e-47 |
| Msa0313680 | Msa0387180 | 0.810226 | 1.280497e-50 | -8.615850e-47 |
| Msa0313680 | Msa0424300 | 0.802969 | 4.358411e-49 | -8.615850e-47 |
| Msa0313680 | Msa0434890 | 0.827270 | 1.716698e-54 | -8.615850e-47 |
| Msa0313680 | Msa0451370 | -0.803657 | 3.139681e-49 | -8.615850e-47 |
| Msa0313680 | Msa0452120 | -0.803856 | 2.854359e-49 | -8.615850e-47 |
| Msa0313680 | Msa0463890 | 0.800086 | 1.699339e-48 | -8.615850e-47 |
| Msa0313680 | Msa0471210 | 0.837919 | 3.911364e-57 | -8.615850e-47 |
| Msa0313680 | Msa0475830 | -0.807172 | 5.754926e-50 | -8.615850e-47 |
| Msa0313680 | Msa0478660 | -0.818730 | 1.682625e-52 | -8.615850e-47 |
| Msa0313680 | Msa0478750 | -0.813956 | 1.968931e-51 | -8.615850e-47 |
| Msa0313680 | Msa0482360 | 0.806172 | 9.358564e-50 | -8.615850e-47 |
| Msa0313680 | Msa0512430 | -0.820770 | 5.755182e-53 | -8.615850e-47 |
| Msa0313680 | Msa0515930 | 0.805294 | 1.430758e-49 | -8.615850e-47 |
| Msa0313680 | Msa0521100 | -0.815081 | 1.109473e-51 | -8.615850e-47 |
| Msa0313680 | Msa0522730 | -0.806481 | 8.055402e-50 | -8.615850e-47 |
| Msa0313680 | Msa0522830 | -0.805835 | 1.102064e-49 | -8.615850e-47 |
| Msa0313680 | Msa0532310 | 0.809037 | 2.305922e-50 | -8.615850e-47 |
| Msa0313680 | Msa0540120 | -0.802186 | 6.322303e-49 | -8.615850e-47 |
| Msa0313680 | Msa0568810 | -0.805314 | 1.417251e-49 | -8.615850e-47 |
| Msa0313680 | Msa0576150 | -0.804749 | 1.860309e-49 | -8.615850e-47 |
| Msa0313680 | Msa0587060 | -0.803832 | 2.887851e-49 | -8.615850e-47 |
| Msa0313680 | Msa0605020 | 0.848047 | 7.859723e-60 | -8.615850e-47 |
| Msa0313680 | Msa0622070 | 0.811126 | 8.183797e-51 | -8.615850e-47 |
| Msa0313680 | Msa0646180 | -0.810551 | 1.089893e-50 | -8.615850e-47 |
| Msa0313680 | Msa0646670 | 0.849104 | 4.005096e-60 | -8.615850e-47 |
| Msa0313680 | Msa0665010 | -0.809685 | 1.674821e-50 | -8.615850e-47 |
| Msa0313680 | Msa0667240 | 0.808277 | 3.352442e-50 | -8.615850e-47 |
| Msa0313680 | Msa0674680 | -0.806153 | 9.444667e-50 | -8.615850e-47 |
| Msa0313680 | Msa0707870 | -0.802988 | 4.319678e-49 | -8.615850e-47 |
| Msa0313680 | Msa0709820 | 0.850354 | 1.793094e-60 | -8.615850e-47 |
| Msa0313680 | Msa0721260 | 0.804697 | 1.907458e-49 | -8.615850e-47 |
| Msa0313680 | Msa0722660 | -0.800525 | 1.383751e-48 | -8.615850e-47 |
| Msa0313680 | Msa0742690 | -0.806511 | 7.939736e-50 | -8.615850e-47 |
| Msa0313680 | Msa0747500 | 0.813590 | 2.369425e-51 | -8.615850e-47 |
| Msa0313680 | Msa0753410 | 0.823893 | 1.084019e-53 | -8.615850e-47 |
| Msa0313680 | Msa0762390 | -0.809593 | 1.752976e-50 | -8.615850e-47 |
| Msa0313680 | Msa0762470 | -0.801837 | 7.456471e-49 | -8.615850e-47 |
| Msa0313680 | Msa0779830 | -0.820574 | 6.383378e-53 | -8.615850e-47 |
| Msa0313680 | Msa0795330 | 0.819667 | 1.029649e-52 | -8.615850e-47 |
| Msa0313680 | Msa0807170 | -0.808376 | 3.192613e-50 | -8.615850e-47 |
| Msa0313680 | Msa0814350 | 0.816220 | 6.186593e-52 | -8.615850e-47 |
| Msa0313680 | Msa0827560 | -0.825080 | 5.695478e-54 | -8.615850e-47 |
| Msa0313680 | Msa0854860 | 0.814672 | 1.367728e-51 | -8.615850e-47 |
| Msa0313680 | Msa0862750 | -0.825614 | 4.257615e-54 | -8.615850e-47 |
| Msa0313680 | Msa0896990 | 0.807116 | 5.915987e-50 | -8.615850e-47 |
| Msa0313680 | Msa0904940 | 0.812835 | 3.471642e-51 | -8.615850e-47 |
| Msa0313680 | Msa0933050 | -0.810447 | 1.147678e-50 | -8.615850e-47 |
| Msa0313680 | Msa0946570 | -0.801709 | 7.923481e-49 | -8.615850e-47 |
| Msa0313680 | Msa0962260 | 0.801409 | 9.126303e-49 | -8.615850e-47 |
| Msa0313680 | Msa1034870 | 0.837805 | 4.185786e-57 | -8.615850e-47 |
| Msa0313680 | Msa1039650 | 0.808019 | 3.804527e-50 | -8.615850e-47 |
| Msa0313680 | Msa1067040 | 0.826543 | 2.561485e-54 | -8.615850e-47 |
| Msa0313680 | Msa1074910 | 0.821825 | 3.286633e-53 | -8.615850e-47 |
| Msa0313680 | Msa1081650 | -0.805083 | 1.584128e-49 | -8.615850e-47 |
| Msa0313680 | Msa1108630 | -0.806830 | 6.798617e-50 | -8.615850e-47 |
| Msa0313680 | Msa1108960 | 0.816537 | 5.253658e-52 | -8.615850e-47 |
| Msa0313680 | Msa1112040 | 0.812330 | 4.475877e-51 | -8.615850e-47 |
| Msa0313680 | Msa1129130 | -0.821272 | 4.410691e-53 | -8.615850e-47 |
| Msa0313680 | Msa1129470 | -0.818075 | 2.368032e-52 | -8.615850e-47 |
| Msa0313680 | Msa1138730 | -0.801682 | 8.025258e-49 | -8.615850e-47 |
| Msa0313680 | Msa1152350 | -0.802636 | 5.106753e-49 | -8.615850e-47 |
| Msa0313680 | Msa1152860 | 0.838263 | 3.190390e-57 | -8.615850e-47 |
| Msa0313680 | Msa1182960 | -0.805035 | 1.621566e-49 | -8.615850e-47 |
| Msa0313680 | Msa1192790 | -0.832629 | 8.477544e-56 | -8.615850e-47 |
| Msa0313680 | Msa1203090 | -0.864562 | 1.112295e-64 | -8.615850e-47 |
| Msa0313680 | Msa1203210 | -0.801480 | 8.825756e-49 | -8.615850e-47 |
| Msa0313680 | Msa1215660 | -0.804552 | 2.044684e-49 | -8.615850e-47 |
| Msa0313680 | Msa1223600 | -0.804056 | 2.593741e-49 | -8.615850e-47 |
| Msa0313680 | Msa1235960 | -0.806676 | 7.327873e-50 | -8.615850e-47 |
| Msa0313680 | Msa1235990 | -0.812660 | 3.791984e-51 | -8.615850e-47 |
| Msa0313680 | Msa1252220 | -0.814951 | 1.185891e-51 | -8.615850e-47 |
| Msa0313680 | Msa1255500 | -0.810580 | 1.073954e-50 | -8.615850e-47 |
| Msa0313680 | Msa1258600 | 0.867660 | 1.161769e-65 | -8.615850e-47 |
| Msa0313680 | Msa1267800 | -0.802124 | 6.509705e-49 | -8.615850e-47 |
| Msa0313680 | Msa1295840 | -0.822133 | 2.787869e-53 | -8.615850e-47 |
| Msa0313680 | Msa1298440 | 0.854366 | 1.290899e-61 | -8.615850e-47 |
| Msa0313680 | Msa1304980 | 0.858106 | 1.034487e-62 | -8.615850e-47 |
| Msa0313680 | Msa1314810 | 0.802240 | 6.161020e-49 | -8.615850e-47 |
| Msa0313680 | Msa1316090 | -0.816817 | 4.547183e-52 | -8.615850e-47 |
| Msa0313680 | Msa1319440 | -0.813393 | 2.619110e-51 | -8.615850e-47 |
| Msa0313680 | Msa1327400 | -0.835939 | 1.252779e-56 | -8.615850e-47 |
| Msa0313680 | Msa1327420 | -0.833707 | 4.568530e-56 | -8.615850e-47 |
| Msa0313680 | Msa1359880 | -0.806755 | 7.049827e-50 | -8.615850e-47 |
| Msa0313680 | Msa1368800 | -0.802330 | 5.903645e-49 | -8.615850e-47 |
| Msa0313680 | Msa1395700 | -0.854120 | 1.521160e-61 | -8.615850e-47 |
| Msa0313680 | Msa1398110 | 0.807606 | 4.655381e-50 | -8.615850e-47 |
| Msa0313680 | Msa1400600 | -0.814394 | 1.575730e-51 | -8.615850e-47 |
| Msa0313680 | Msa1400940 | 0.869329 | 3.360066e-66 | -8.615850e-47 |
| Msa0313680 | Msa1402000 | 0.807709 | 4.428300e-50 | -8.615850e-47 |
| Msa0313680 | Msa1426690 | -0.824796 | 6.648277e-54 | -8.615850e-47 |
| Msa0313680 | Msa1433060 | -0.819948 | 8.881858e-53 | -8.615850e-47 |
| Msa0313680 | Msa1433380 | -0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0313680 | Msa1449510 | -0.802781 | 4.767611e-49 | -8.615850e-47 |
| Msa0313680 | Msa1450710 | 0.853812 | 1.865225e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313680 | MtrunA17_Chr2g0283471 | 97.440 | 586 | 11 | 1 | 1 | 586 | 1 | 582 | 0.0 | 1178 |
| Msa0313680 | MtrunA17_Chr7g0242961 | 82.155 | 566 | 101 | 0 | 21 | 586 | 38 | 603 | 0.0 | 983 |
| Msa0313680 | MtrunA17_Chr4g0007071 | 78.360 | 573 | 124 | 0 | 14 | 586 | 35 | 607 | 0.0 | 951 |
| Msa0313680 | MtrunA17_Chr5g0420011 | 78.185 | 573 | 125 | 0 | 14 | 586 | 35 | 607 | 0.0 | 949 |
| Msa0313680 | MtrunA17_Chr7g0242981 | 76.440 | 573 | 119 | 1 | 14 | 586 | 33 | 589 | 0.0 | 915 |
| Msa0313680 | MtrunA17_Chr2g0279461 | 65.116 | 215 | 47 | 1 | 25 | 211 | 51 | 265 | 7.39e-99 | 301 |
| Msa0313680 | MtrunA17_Chr2g0279471 | 67.241 | 116 | 38 | 0 | 468 | 583 | 17 | 132 | 3.05e-49 | 167 |
| Msa0313680 | MtrunA17_Chr2g0290681 | 23.230 | 551 | 369 | 16 | 30 | 547 | 67 | 596 | 3.48e-17 | 85.1 |
| Msa0313680 | MtrunA17_Chr3g0132201 | 23.178 | 535 | 357 | 15 | 9 | 512 | 57 | 568 | 5.18e-17 | 84.7 |
| Msa0313680 | MtrunA17_Chr2g0281881 | 22.656 | 512 | 340 | 16 | 30 | 512 | 88 | 572 | 7.76e-15 | 77.8 |
| Msa0313680 | MtrunA17_Chr6g0449041 | 22.835 | 508 | 310 | 21 | 31 | 492 | 11 | 482 | 8.28e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313680 | AT5G54960.1 | 81.062 | 565 | 107 | 0 | 22 | 586 | 43 | 607 | 0.0 | 974 |
| Msa0313680 | AT4G33070.1 | 79.021 | 572 | 120 | 0 | 15 | 586 | 36 | 607 | 0.0 | 964 |
| Msa0313680 | AT5G01320.1 | 80.212 | 566 | 112 | 0 | 21 | 586 | 38 | 603 | 0.0 | 964 |
| Msa0313680 | AT5G01330.1 | 77.975 | 563 | 124 | 0 | 24 | 586 | 30 | 592 | 0.0 | 936 |
| Msa0313680 | AT3G48560.1 | 22.563 | 554 | 368 | 17 | 30 | 547 | 103 | 631 | 6.33e-13 | 72.0 |
Find 172 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAATTTGTATATTTAATT+TGG | 0.147828 | 2_4:+9104133 | Msa0313680:three_prime_UTR |
| CTTAACTGCATTGTCTAAAA+AGG | 0.176719 | 2_4:+9102643 | Msa0313680:CDS |
| CCGATTGGGCTGTATAATTA+AGG | 0.241271 | 2_4:-9102570 | None:intergenic |
| CGCGATGTCTTCTCTGTTCC+CGG | 0.267229 | 2_4:+9100801 | Msa0313680:CDS |
| AGCATTTCCCCTCTCCATTA+TGG | 0.274068 | 2_4:-9103747 | None:intergenic |
| GCCTTTGCTACCCTAAGTTT+TGG | 0.287789 | 2_4:-9102311 | None:intergenic |
| CACATTTCATTGGAACATAC+TGG | 0.298376 | 2_4:+9102423 | Msa0313680:CDS |
| CCATTCTAGCAACTCTTTGC+TGG | 0.311297 | 2_4:-9104011 | None:intergenic |
| AGAATTCTTCATCATACTAT+TGG | 0.312759 | 2_4:+9101074 | Msa0313680:CDS |
| TGTTCTATTCAAGCACATTC+AGG | 0.312908 | 2_4:+9102763 | Msa0313680:CDS |
| CCGGAGGGCATTACAGCTAT+TGG | 0.321768 | 2_4:-9102374 | None:intergenic |
| TTCTGGTACAAGTCCTTTAC+CGG | 0.332305 | 2_4:-9102393 | None:intergenic |
| CATACAATGTGATCAAGAAT+TGG | 0.342392 | 2_4:+9103698 | Msa0313680:CDS |
| ATTGGCAATGGTCTTTCCTT+AGG | 0.347746 | 2_4:+9102599 | Msa0313680:CDS |
| CAATGGTCTTTCCTTAGGTT+GGG | 0.348448 | 2_4:+9102604 | Msa0313680:CDS |
| ATATGCATAATGCAGTAATT+AGG | 0.356907 | 2_4:-9104092 | None:intergenic |
| TCCGTTTGCCTGAGAATTGC+GGG | 0.357039 | 2_4:+9103222 | Msa0313680:CDS |
| GCAATGGTCTTTCCTTAGGT+TGG | 0.372204 | 2_4:+9102603 | Msa0313680:CDS |
| GTACCATAGTCATTAGAATT+AGG | 0.372904 | 2_4:-9101047 | None:intergenic |
| CAACCTATGCTTATATAAAC+AGG | 0.377211 | 2_4:-9101727 | None:intergenic |
| AGTATTCTCAACGCCATTGC+CGG | 0.382049 | 2_4:+9100981 | Msa0313680:CDS |
| CAATTCTTGATCACATTGTA+TGG | 0.382941 | 2_4:-9103697 | None:intergenic |
| GAAAATCATCCACATTTCAT+TGG | 0.391339 | 2_4:+9102413 | Msa0313680:CDS |
| CAATTGATCCATACTGCATC+TGG | 0.392111 | 2_4:-9103362 | None:intergenic |
| GAAGCAATTGCAACTGCTAC+TGG | 0.392822 | 2_4:+9103935 | Msa0313680:CDS |
| CCTTAATTATACAGCCCAAT+CGG | 0.396259 | 2_4:+9102570 | Msa0313680:CDS |
| AATAGAACATTAACTCTAAG+AGG | 0.396585 | 2_4:-9102749 | None:intergenic |
| CGATGGGCGGCCACCTTGCA+CGG | 0.405963 | 2_4:+9100757 | Msa0313680:CDS |
| AGCATAGGTTGTAATCTTCC+TGG | 0.407316 | 2_4:+9101739 | Msa0313680:CDS |
| GACGGCGGATGGAACACAAC+TGG | 0.411069 | 2_4:-9100712 | None:intergenic |
| GGACCTAATTCTAATGACTA+TGG | 0.411083 | 2_4:+9101044 | Msa0313680:CDS |
| CAGATGCAGTATGGATCAAT+TGG | 0.413027 | 2_4:+9103363 | Msa0313680:CDS |
| TGAGCTCCGGCTCAGCGATC+AGG | 0.413257 | 2_4:-9100851 | None:intergenic |
| TATGAATTCCAGATGCAGTA+TGG | 0.413567 | 2_4:+9103354 | Msa0313680:CDS |
| TTAATATGGTTAAGTTTGGT+TGG | 0.413924 | 2_4:-9100539 | None:intergenic |
| TATATGCAGGGTAAGCAATC+AGG | 0.434839 | 2_4:+9102214 | Msa0313680:intron |
| TCGTGGGCGGGCCAAAACTT+AGG | 0.435343 | 2_4:+9102300 | Msa0313680:CDS |
| TTTGGCCCGCCCACGATCAC+TGG | 0.439101 | 2_4:-9102293 | None:intergenic |
| TTATAGTGGAGGACATGTAT+AGG | 0.440452 | 2_4:+9104162 | Msa0313680:three_prime_UTR |
| CAGCAAAGAGTTGCTAGAAT+GGG | 0.446474 | 2_4:+9104012 | Msa0313680:CDS |
| AAAGGCACAGAAGGCTTTCA+TGG | 0.450180 | 2_4:+9102328 | Msa0313680:CDS |
| AGCTTACAGTGAAAACTTGC+CGG | 0.452863 | 2_4:+9101004 | Msa0313680:CDS |
| AAAGTTGGATGAGGAATTCC+AGG | 0.455082 | 2_4:-9101757 | None:intergenic |
| TTCAATGACTATAGTTCGGT+TGG | 0.457129 | 2_4:+9102518 | Msa0313680:CDS |
| TGCTGTAACGAGCTGAATGC+TGG | 0.458389 | 2_4:+9100885 | Msa0313680:CDS |
| CGAACTATAGTCATTGAAGA+TGG | 0.460060 | 2_4:-9102513 | None:intergenic |
| TATAACCTCCATTGTTAATG+AGG | 0.464139 | 2_4:-9103648 | None:intergenic |
| CCAGCAAAGAGTTGCTAGAA+TGG | 0.466543 | 2_4:+9104011 | Msa0313680:CDS |
| ATACAATGTGATCAAGAATT+GGG | 0.467312 | 2_4:+9103699 | Msa0313680:CDS |
| ATGACTTACCCGCAATTCTC+AGG | 0.469236 | 2_4:-9103230 | None:intergenic |
| TTGCCAATGGTGACCCGATT+GGG | 0.471157 | 2_4:-9102584 | None:intergenic |
| GCTGTAATGCCCTCCGGTAA+AGG | 0.472150 | 2_4:+9102380 | Msa0313680:CDS |
| AGTTGCTAGAATGGGGATCC+CGG | 0.472564 | 2_4:+9104020 | Msa0313680:CDS |
| CATCTTCAATGACTATAGTT+CGG | 0.473413 | 2_4:+9102514 | Msa0313680:CDS |
| TAATAAGAATTACATACAAC+AGG | 0.473583 | 2_4:-9104307 | None:intergenic |
| GCCGCCCATCGTTCCATCAC+AGG | 0.477265 | 2_4:-9100745 | None:intergenic |
| TTGCCGGTGATTTGTATTGT+TGG | 0.479771 | 2_4:+9101020 | Msa0313680:CDS |
| TAGCTGAAACCGGAGATTCA+TGG | 0.480081 | 2_4:+9103183 | Msa0313680:CDS |
| CGTGGGCGGGCCAAAACTTA+GGG | 0.484670 | 2_4:+9102301 | Msa0313680:CDS |
| CGAAGCTCTTGCGAAAAGTC+AGG | 0.485446 | 2_4:-9101101 | None:intergenic |
| ATACTCATTGTTGATAAAGA+AGG | 0.491540 | 2_4:+9102541 | Msa0313680:CDS |
| CGCCGGGCATTCCTTTGAAG+CGG | 0.492468 | 2_4:+9102714 | Msa0313680:CDS |
| GCCGGGCATTCCTTTGAAGC+GGG | 0.494061 | 2_4:+9102715 | Msa0313680:CDS |
| GTGAAGGGACGGACGGCGGA+TGG | 0.494193 | 2_4:-9100723 | None:intergenic |
| ACACAAACTATCAAACTCAA+TGG | 0.495489 | 2_4:+9100665 | Msa0313680:exon |
| AAGTGAAGAAGTTTATGAAA+GGG | 0.496374 | 2_4:-9100564 | None:intergenic |
| TGGTCAGTAGGTGCTACTCT+TGG | 0.498559 | 2_4:+9103387 | Msa0313680:CDS |
| ATAATGGAGAGGGGAAATGC+TGG | 0.498584 | 2_4:+9103749 | Msa0313680:CDS |
| GTCCGTCCCTTCACCTGTGA+TGG | 0.499685 | 2_4:+9100732 | Msa0313680:CDS |
| TACATACAACAGGATATCAT+TGG | 0.501330 | 2_4:-9104297 | None:intergenic |
| GGATCAATTGGTTGGTCAGT+AGG | 0.502445 | 2_4:+9103375 | Msa0313680:CDS |
| TCATCCTTCTCCCGCTTCAA+AGG | 0.503104 | 2_4:-9102725 | None:intergenic |
| ACTGCTGTAATAGCTGAAAC+CGG | 0.503719 | 2_4:+9103173 | Msa0313680:CDS |
| CTGTCAGTACTAGCTACTGT+GGG | 0.503887 | 2_4:+9102450 | Msa0313680:CDS |
| AACACACGCGCCAACTCCCT+TGG | 0.506506 | 2_4:-9100934 | None:intergenic |
| CTTAATTATACAGCCCAATC+GGG | 0.507111 | 2_4:+9102571 | Msa0313680:CDS |
| TCAGGCAGTGGTGAATAACT+TGG | 0.509647 | 2_4:+9101648 | Msa0313680:intron |
| GCACGGCGCCTCGTTGAGAT+CGG | 0.512058 | 2_4:+9100774 | Msa0313680:CDS |
| TACGCACGTGCCAAGGGAGT+TGG | 0.512127 | 2_4:+9100924 | Msa0313680:CDS |
| GGCTGTTAGCAGCAGCAACC+CGG | 0.512218 | 2_4:-9104039 | None:intergenic |
| AAGAGTTAAATTGAAGTCAC+CGG | 0.515268 | 2_4:-9100820 | None:intergenic |
| ACATTTCATTGGAACATACT+GGG | 0.516280 | 2_4:+9102424 | Msa0313680:CDS |
| TGACCACCTGATCGCTGAGC+CGG | 0.516519 | 2_4:+9100845 | Msa0313680:CDS |
| CCGGTGATTTGTATTGTTGG+AGG | 0.519985 | 2_4:+9101023 | Msa0313680:CDS |
| TGACGGTTACGCACGTGCCA+AGG | 0.521812 | 2_4:+9100917 | Msa0313680:CDS |
| ACAGTTAAACCATGAATCTC+CGG | 0.523001 | 2_4:-9103192 | None:intergenic |
| ATTGCCAATGGTGACCCGAT+TGG | 0.524019 | 2_4:-9102585 | None:intergenic |
| GATGGAACACAACTGGGAGG+AGG | 0.524683 | 2_4:-9100705 | None:intergenic |
| TGAAGCCAGTGATCGTGGGC+GGG | 0.526274 | 2_4:+9102288 | Msa0313680:CDS |
| ACGGCGGATGGAACACAACT+GGG | 0.527760 | 2_4:-9100711 | None:intergenic |
| ACCCGCAATTCTCAGGCAAA+CGG | 0.528878 | 2_4:-9103223 | None:intergenic |
| CATTCCTTTGAAGCGGGAGA+AGG | 0.531683 | 2_4:+9102721 | Msa0313680:CDS |
| ACAGGGTCCCTAGCAAAAGT+TGG | 0.532482 | 2_4:-9101772 | None:intergenic |
| AGCTGTGAAGCCAGTGATCG+TGG | 0.532532 | 2_4:+9102283 | Msa0313680:CDS |
| ATTGAAGTTGAGATTCATGA+TGG | 0.533621 | 2_4:+9103673 | Msa0313680:CDS |
| ATGGAGTTTGCAGAAGCTAG+TGG | 0.535258 | 2_4:+9102347 | Msa0313680:CDS |
| CCGTAGAATCTATGTTCCGC+CGG | 0.536077 | 2_4:+9102697 | Msa0313680:CDS |
| CAGCCCAATCGGGTCACCAT+TGG | 0.536193 | 2_4:+9102581 | Msa0313680:CDS |
| CTCCGTTTGCCTGAGAATTG+CGG | 0.539254 | 2_4:+9103221 | Msa0313680:CDS |
| TCTATTGGGGATTAGGAGGA+CGG | 0.540406 | 2_4:-9104060 | None:intergenic |
| AAGCCTGTTTATATAAGCAT+AGG | 0.541294 | 2_4:+9101724 | Msa0313680:CDS |
| TCCCGCTTCAAAGGAATGCC+CGG | 0.545573 | 2_4:-9102716 | None:intergenic |
| TGCTACTCTTGGATATGCAC+AGG | 0.546594 | 2_4:+9103398 | Msa0313680:CDS |
| CATCGTTCCATCACAGGTGA+AGG | 0.549457 | 2_4:-9100739 | None:intergenic |
| GACGGTTACGCACGTGCCAA+GGG | 0.554158 | 2_4:+9100918 | Msa0313680:CDS |
| GCCAAAACTTAGGGTAGCAA+AGG | 0.554357 | 2_4:+9102310 | Msa0313680:CDS |
| TTTGTGAGTGCCATCCATAA+TGG | 0.556042 | 2_4:+9103733 | Msa0313680:CDS |
| GTGAAGCCAGTGATCGTGGG+CGG | 0.556799 | 2_4:+9102287 | Msa0313680:CDS |
| ATGGATGGCACTCACAAAGC+GGG | 0.559447 | 2_4:-9103728 | None:intergenic |
| TTCACCTGTGATGGAACGAT+GGG | 0.561828 | 2_4:+9100741 | Msa0313680:CDS |
| TGCAGTATGGATCAATTGGT+TGG | 0.563971 | 2_4:+9103367 | Msa0313680:CDS |
| GCTGTTAGCAGCAGCAACCC+GGG | 0.564051 | 2_4:-9104038 | None:intergenic |
| GAAGTGAAGAAGTTTATGAA+AGG | 0.564619 | 2_4:-9100565 | None:intergenic |
| TCTCAACGAGGCGCCGTGCA+AGG | 0.567432 | 2_4:-9100770 | None:intergenic |
| ACCTGTGATGGAACGATGGG+CGG | 0.568178 | 2_4:+9100744 | Msa0313680:CDS |
| TTCACTGTAAGCTCCGGCAA+TGG | 0.568212 | 2_4:-9100994 | None:intergenic |
| CTTCACCTGTGATGGAACGA+TGG | 0.568221 | 2_4:+9100740 | Msa0313680:CDS |
| CCTTATTTAGGTGACGGCAC+AGG | 0.570395 | 2_4:+9103582 | Msa0313680:intron |
| AATCGGGTCACCATTGGCAA+TGG | 0.570764 | 2_4:+9102587 | Msa0313680:CDS |
| TGCAACACTTGAGGACAAGA+TGG | 0.571581 | 2_4:-9104242 | None:intergenic |
| ATGGAACACAACTGGGAGGA+GGG | 0.572325 | 2_4:-9100704 | None:intergenic |
| GGGGAAATGCTGGACTGCTA+AGG | 0.572838 | 2_4:+9103759 | Msa0313680:CDS |
| TAGGGTAGCAAAGGCACAGA+AGG | 0.572977 | 2_4:+9102319 | Msa0313680:CDS |
| TTTCCCCTCTCCATTATGGA+TGG | 0.575380 | 2_4:-9103743 | None:intergenic |
| ATCTTCCTCATTAACAATGG+AGG | 0.578555 | 2_4:+9103643 | Msa0313680:CDS |
| CGTAGAATCTATGTTCCGCC+GGG | 0.578586 | 2_4:+9102698 | Msa0313680:CDS |
| GTTGCTAGAATGGGGATCCC+GGG | 0.579978 | 2_4:+9104021 | Msa0313680:CDS |
| GGCAGTGGTGAATAACTTGG+AGG | 0.581002 | 2_4:+9101651 | Msa0313680:intron |
| AGCCATGAAAACCCAACCTA+AGG | 0.581125 | 2_4:-9102615 | None:intergenic |
| CCGGCGGAACATAGATTCTA+CGG | 0.582973 | 2_4:-9102697 | None:intergenic |
| CCAATAGCTGTAATGCCCTC+CGG | 0.583459 | 2_4:+9102374 | Msa0313680:CDS |
| GTGATTGCATGCATTGGTGA+TGG | 0.584370 | 2_4:+9103438 | Msa0313680:CDS |
| TCCCTAGCAAAAGTTGGATG+AGG | 0.588011 | 2_4:-9101766 | None:intergenic |
| ACAACAAAGTGCAACACTTG+AGG | 0.589324 | 2_4:-9104251 | None:intergenic |
| GAACTATAGTCATTGAAGAT+GGG | 0.590504 | 2_4:-9102512 | None:intergenic |
| GAGCCGGAGCTCAACCTCGT+CGG | 0.599794 | 2_4:+9100861 | Msa0313680:CDS |
| CAACCGACGAGGTTGAGCTC+CGG | 0.602678 | 2_4:-9100864 | None:intergenic |
| TTCCATCACAGGTGAAGGGA+CGG | 0.603435 | 2_4:-9100734 | None:intergenic |
| GCTCCGGCTCAGCGATCAGG+TGG | 0.604206 | 2_4:-9100848 | None:intergenic |
| AGAAGCAGCTGTCGAAGAAG+CGG | 0.612852 | 2_4:+9102244 | Msa0313680:CDS |
| ATTTCAACAATGATCCGTTG+TGG | 0.614449 | 2_4:+9103607 | Msa0313680:CDS |
| ACGGTAATTCTCCACAGCTG+TGG | 0.615891 | 2_4:-9102678 | None:intergenic |
| AGAGTTAAATTGAAGTCACC+GGG | 0.615952 | 2_4:-9100819 | None:intergenic |
| GTTGAACAGGAACTGCTAAG+TGG | 0.616520 | 2_4:+9103146 | Msa0313680:intron |
| TGCAGGGTAAGCAATCAGGA+AGG | 0.617642 | 2_4:+9102218 | Msa0313680:intron |
| ATCATCTTCCTCATTAACAA+TGG | 0.620276 | 2_4:+9103640 | Msa0313680:CDS |
| GCTGTCAGTACTAGCTACTG+TGG | 0.622291 | 2_4:+9102449 | Msa0313680:CDS |
| CCTCCAACAATACAAATCAC+CGG | 0.622440 | 2_4:-9101023 | None:intergenic |
| ATCGTTCCATCACAGGTGAA+GGG | 0.622898 | 2_4:-9100738 | None:intergenic |
| TGGTACAAGTCCTTTACCGG+AGG | 0.626304 | 2_4:-9102390 | None:intergenic |
| AGTGCCATCCATAATGGAGA+GGG | 0.626807 | 2_4:+9103739 | Msa0313680:CDS |
| GCTGTGAAGCCAGTGATCGT+GGG | 0.629235 | 2_4:+9102284 | Msa0313680:CDS |
| GGTACAAGTCCTTTACCGGA+GGG | 0.630851 | 2_4:-9102389 | None:intergenic |
| AAGCGTGTGATTGCATGCAT+TGG | 0.633443 | 2_4:+9103432 | Msa0313680:CDS |
| CAGTATGTTCCAATGAAATG+TGG | 0.633740 | 2_4:-9102422 | None:intergenic |
| ATCACAGGTGAAGGGACGGA+CGG | 0.639749 | 2_4:-9100730 | None:intergenic |
| CAACGAGGCGCCGTGCAAGG+TGG | 0.646826 | 2_4:-9100767 | None:intergenic |
| TAAGGAAAGACCATTGCCAA+TGG | 0.647139 | 2_4:-9102597 | None:intergenic |
| AGCAAAGAGTTGCTAGAATG+GGG | 0.647655 | 2_4:+9104013 | Msa0313680:CDS |
| ACAGGTGAAGGGACGGACGG+CGG | 0.660278 | 2_4:-9100727 | None:intergenic |
| GCAGGGTAAGCAATCAGGAA+GGG | 0.661004 | 2_4:+9102219 | Msa0313680:intron |
| AATGCTGGATATGCTGCTGA+CGG | 0.662126 | 2_4:+9100900 | Msa0313680:CDS |
| CATTTCATTGGAACATACTG+GGG | 0.673408 | 2_4:+9102425 | Msa0313680:CDS |
| GAGTGCCATCCATAATGGAG+AGG | 0.675947 | 2_4:+9103738 | Msa0313680:CDS |
| GCGGATGGAACACAACTGGG+AGG | 0.692548 | 2_4:-9100708 | None:intergenic |
| CGCGAACGCCGATCTCAACG+AGG | 0.693205 | 2_4:-9100782 | None:intergenic |
| TATGGATGGCACTCACAAAG+CGG | 0.696212 | 2_4:-9103729 | None:intergenic |
| CGCTTCAAAGGAATGCCCGG+CGG | 0.703133 | 2_4:-9102713 | None:intergenic |
| GTGAGTATAGGTACGTACAG+AGG | 0.709245 | 2_4:+9103901 | Msa0313680:intron |
| GTGCCATCCATAATGGAGAG+GGG | 0.709547 | 2_4:+9103740 | Msa0313680:CDS |
| GCTCGTTACAGCAACCGACG+AGG | 0.724744 | 2_4:-9100875 | None:intergenic |
| TGTCAGTACTAGCTACTGTG+GGG | 0.752691 | 2_4:+9102451 | Msa0313680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATCATTAATTAAAG+TGG | - | chr2_4:9102107-9102126 | None:intergenic | 10.0% |
| !! | AAATAAATTAATTAATGAAC+AGG | - | chr2_4:9103544-9103563 | None:intergenic | 10.0% |
| !! | ACAGTAATATAGTAATTTAA+TGG | - | chr2_4:9103095-9103114 | None:intergenic | 15.0% |
| !!! | TTAATTAATTTATTTTCGGA+TGG | + | chr2_4:9103549-9103568 | Msa0313680:intron | 15.0% |
| !!! | TTTATGAAAGGGTTTTAATA+TGG | - | chr2_4:9100556-9100575 | None:intergenic | 20.0% |
| !!! | TTTTCTCTTATATATAGGAT+TGG | - | chr2_4:9101190-9101209 | None:intergenic | 20.0% |
| !!! | CTCAATTTTCTCTTATATAT+AGG | - | chr2_4:9101195-9101214 | None:intergenic | 20.0% |
| !! | AAATAATAAACGAACTTAGA+AGG | - | chr2_4:9101951-9101970 | None:intergenic | 20.0% |
| !! | ATTTATCCATATAGTATTCA+TGG | + | chr2_4:9102122-9102141 | Msa0313680:intron | 20.0% |
| !!! | ACATTTTTACAATTATATGC+AGG | + | chr2_4:9102201-9102220 | Msa0313680:intron | 20.0% |
| !!! | CATTTTTACAATTATATGCA+GGG | + | chr2_4:9102202-9102221 | Msa0313680:intron | 20.0% |
| !! | TAACAGGATAAATCTAAAAA+AGG | - | chr2_4:9102898-9102917 | None:intergenic | 20.0% |
| !!! | TTAGGAATTGATTTTCTATT+GGG | - | chr2_4:9104077-9104096 | None:intergenic | 20.0% |
| !!! | ATTAGGAATTGATTTTCTAT+TGG | - | chr2_4:9104078-9104097 | None:intergenic | 20.0% |
| !! | TAATAAGAATTACATACAAC+AGG | - | chr2_4:9104310-9104329 | None:intergenic | 20.0% |
| !!! | GGTTTTAATATGGTTAAGTT+TGG | - | chr2_4:9100546-9100565 | None:intergenic | 25.0% |
| ! | AAGTGAAGAAGTTTATGAAA+GGG | - | chr2_4:9100567-9100586 | None:intergenic | 25.0% |
| ! | AGAATTCTTCATCATACTAT+TGG | + | chr2_4:9101074-9101093 | Msa0313680:CDS | 25.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | + | chr2_4:9101215-9101234 | Msa0313680:intron | 25.0% |
| !!! | TTGGTTTAAGTTGAAGTATT+TGG | + | chr2_4:9101234-9101253 | Msa0313680:intron | 25.0% |
| !! | ATTTGGTTCAAAAATCCAAA+TGG | + | chr2_4:9101251-9101270 | Msa0313680:intron | 25.0% |
| ! | AAAATCCAAATGGATGTATA+TGG | + | chr2_4:9101261-9101280 | Msa0313680:intron | 25.0% |
| ! | AGTCATACATTCTTTCTAAA+AGG | - | chr2_4:9101877-9101896 | None:intergenic | 25.0% |
| ! | TAGAAAGAATGTATGACTAA+TGG | + | chr2_4:9101879-9101898 | Msa0313680:intron | 25.0% |
| ! | TTTGTTCATGCATTCATATT+TGG | + | chr2_4:9102151-9102170 | Msa0313680:intron | 25.0% |
| !! | ATACTCATTGTTGATAAAGA+AGG | + | chr2_4:9102541-9102560 | Msa0313680:CDS | 25.0% |
| ! | AATAGAACATTAACTCTAAG+AGG | - | chr2_4:9102752-9102771 | None:intergenic | 25.0% |
| !!! | AATATGCAATATTGTTTCTG+TGG | + | chr2_4:9103066-9103085 | Msa0313680:intron | 25.0% |
| ! | TATTTAATTGCTGAACTGAA+TGG | - | chr2_4:9103125-9103144 | None:intergenic | 25.0% |
| ! | AGCAATTAAATATGTTGAAC+AGG | + | chr2_4:9103133-9103152 | Msa0313680:intron | 25.0% |
| ! | ATACAATGTGATCAAGAATT+GGG | + | chr2_4:9103699-9103718 | Msa0313680:CDS | 25.0% |
| ! | CAAATTCTAAACTAAAACAG+TGG | - | chr2_4:9103814-9103833 | None:intergenic | 25.0% |
| !!! | CACTGTTTTAGTTTAGAATT+TGG | + | chr2_4:9103812-9103831 | Msa0313680:intron | 25.0% |
| !! | TTAGTTTAGAATTTGGTTGA+AGG | + | chr2_4:9103819-9103838 | Msa0313680:intron | 25.0% |
| !!! | AAATTCACTTTTGTGAGTAT+AGG | + | chr2_4:9103889-9103908 | Msa0313680:intron | 25.0% |
| !!! | TAGGAATTGATTTTCTATTG+GGG | - | chr2_4:9104076-9104095 | None:intergenic | 25.0% |
| ! | ATATGCATAATGCAGTAATT+AGG | - | chr2_4:9104095-9104114 | None:intergenic | 25.0% |
| !!! | TAATTTGGTGCATTTTATAG+TGG | + | chr2_4:9104148-9104167 | Msa0313680:three_prime_UTR | 25.0% |
| ! | TAGGATAAATGTGACAAAAA+TGG | + | chr2_4:9104181-9104200 | Msa0313680:three_prime_UTR | 25.0% |
| GAAGTGAAGAAGTTTATGAA+AGG | - | chr2_4:9100568-9100587 | None:intergenic | 30.0% | |
| ACACAAACTATCAAACTCAA+TGG | + | chr2_4:9100665-9100684 | Msa0313680:exon | 30.0% | |
| AAGAGTTAAATTGAAGTCAC+CGG | - | chr2_4:9100823-9100842 | None:intergenic | 30.0% | |
| GTACCATAGTCATTAGAATT+AGG | - | chr2_4:9101050-9101069 | None:intergenic | 30.0% | |
| TTGAACCATATACATCCATT+TGG | - | chr2_4:9101269-9101288 | None:intergenic | 30.0% | |
| !! | TATTGACTCAAATTTCTCAC+TGG | + | chr2_4:9101308-9101327 | Msa0313680:intron | 30.0% |
| AGATTCTCAATGATCAAGAT+AGG | - | chr2_4:9101605-9101624 | None:intergenic | 30.0% | |
| TTGAGAATCTGATGATATTG+TGG | + | chr2_4:9101615-9101634 | Msa0313680:intron | 30.0% | |
| ! | TATTGTGGTGTGAATTTTTC+AGG | + | chr2_4:9101630-9101649 | Msa0313680:intron | 30.0% |
| AAGCCTGTTTATATAAGCAT+AGG | + | chr2_4:9101724-9101743 | Msa0313680:CDS | 30.0% | |
| CAACCTATGCTTATATAAAC+AGG | - | chr2_4:9101730-9101749 | None:intergenic | 30.0% | |
| AATTATAGCATTCGTTCATG+AGG | + | chr2_4:9101992-9102011 | Msa0313680:intron | 30.0% | |
| CATTTAACATCTGTCTTCAA+GGG | - | chr2_4:9102074-9102093 | None:intergenic | 30.0% | |
| !! | ATTAATTAAAGTGGCTCTAG+TGG | - | chr2_4:9102098-9102117 | None:intergenic | 30.0% |
| CATGATCCATGAATACTATA+TGG | - | chr2_4:9102131-9102150 | None:intergenic | 30.0% | |
| ! | ATGAAATGTGGATGATTTTC+TGG | - | chr2_4:9102413-9102432 | None:intergenic | 30.0% |
| GAAAATCATCCACATTTCAT+TGG | + | chr2_4:9102413-9102432 | Msa0313680:CDS | 30.0% | |
| ACATTTCATTGGAACATACT+GGG | + | chr2_4:9102424-9102443 | Msa0313680:CDS | 30.0% | |
| GAACTATAGTCATTGAAGAT+GGG | - | chr2_4:9102515-9102534 | None:intergenic | 30.0% | |
| CATCTTCAATGACTATAGTT+CGG | + | chr2_4:9102514-9102533 | Msa0313680:CDS | 30.0% | |
| CTTAACTGCATTGTCTAAAA+AGG | + | chr2_4:9102643-9102662 | Msa0313680:CDS | 30.0% | |
| AATTCAGTCTAGTGATTCTT+TGG | + | chr2_4:9102817-9102836 | Msa0313680:intron | 30.0% | |
| GCATTAGCTATTTACTACAA+TGG | - | chr2_4:9102869-9102888 | None:intergenic | 30.0% | |
| !! | ATGTATGTGTTGATTATGAG+TGG | + | chr2_4:9102961-9102980 | Msa0313680:intron | 30.0% |
| TGGAATTCATAACTGAAAGA+TGG | - | chr2_4:9103345-9103364 | None:intergenic | 30.0% | |
| ATCATCTTCCTCATTAACAA+TGG | + | chr2_4:9103640-9103659 | Msa0313680:CDS | 30.0% | |
| TATAACCTCCATTGTTAATG+AGG | - | chr2_4:9103651-9103670 | None:intergenic | 30.0% | |
| ATTGAAGTTGAGATTCATGA+TGG | + | chr2_4:9103673-9103692 | Msa0313680:CDS | 30.0% | |
| CAATTCTTGATCACATTGTA+TGG | - | chr2_4:9103700-9103719 | None:intergenic | 30.0% | |
| CATACAATGTGATCAAGAAT+TGG | + | chr2_4:9103698-9103717 | Msa0313680:CDS | 30.0% | |
| ! | TTGATTTTCTATTGGGGATT+AGG | - | chr2_4:9104070-9104089 | None:intergenic | 30.0% |
| TACATACAACAGGATATCAT+TGG | - | chr2_4:9104300-9104319 | None:intergenic | 30.0% | |
| AGAGTTAAATTGAAGTCACC+GGG | - | chr2_4:9100822-9100841 | None:intergenic | 35.0% | |
| ! | TGTGTTGTGACTTTTACAGT+CGG | + | chr2_4:9100951-9100970 | Msa0313680:CDS | 35.0% |
| GGACCTAATTCTAATGACTA+TGG | + | chr2_4:9101044-9101063 | Msa0313680:CDS | 35.0% | |
| ! | TCAAACGATCACATGTTTTC+AGG | + | chr2_4:9101130-9101149 | Msa0313680:CDS | 35.0% |
| TTTGAGAACATATGTCAGAC+CGG | + | chr2_4:9101342-9101361 | Msa0313680:intron | 35.0% | |
| GTGCAAGAAAAAATGGAACA+GGG | - | chr2_4:9101792-9101811 | None:intergenic | 35.0% | |
| !!! | TTCCATTTTTTCTTGCACCA+AGG | + | chr2_4:9101794-9101813 | Msa0313680:CDS | 35.0% |
| ! | TACCTTGGTGCAAGAAAAAA+TGG | - | chr2_4:9101799-9101818 | None:intergenic | 35.0% |
| GGTAAGCAAAATACATACCT+TGG | - | chr2_4:9101814-9101833 | None:intergenic | 35.0% | |
| CAGATAACAGAAACTTCACA+AGG | - | chr2_4:9101835-9101854 | None:intergenic | 35.0% | |
| ! | GTATGACTAATGGTAGTGAT+AGG | + | chr2_4:9101889-9101908 | Msa0313680:intron | 35.0% |
| CCATTTAACATCTGTCTTCA+AGG | - | chr2_4:9102075-9102094 | None:intergenic | 35.0% | |
| CCTTGAAGACAGATGTTAAA+TGG | + | chr2_4:9102072-9102091 | Msa0313680:intron | 35.0% | |
| CATGCATTCATATTTGGCAT+TGG | + | chr2_4:9102157-9102176 | Msa0313680:intron | 35.0% | |
| CAGTATGTTCCAATGAAATG+TGG | - | chr2_4:9102425-9102444 | None:intergenic | 35.0% | |
| CACATTTCATTGGAACATAC+TGG | + | chr2_4:9102423-9102442 | Msa0313680:CDS | 35.0% | |
| CATTTCATTGGAACATACTG+GGG | + | chr2_4:9102425-9102444 | Msa0313680:CDS | 35.0% | |
| !! | GCTGATGCTTATGTTTTTGT+TGG | + | chr2_4:9102488-9102507 | Msa0313680:CDS | 35.0% |
| CGAACTATAGTCATTGAAGA+TGG | - | chr2_4:9102516-9102535 | None:intergenic | 35.0% | |
| TTCAATGACTATAGTTCGGT+TGG | + | chr2_4:9102518-9102537 | Msa0313680:CDS | 35.0% | |
| CCTTAATTATACAGCCCAAT+CGG | + | chr2_4:9102570-9102589 | Msa0313680:CDS | 35.0% | |
| CTTAATTATACAGCCCAATC+GGG | + | chr2_4:9102571-9102590 | Msa0313680:CDS | 35.0% | |
| TGTTCTATTCAAGCACATTC+AGG | + | chr2_4:9102763-9102782 | Msa0313680:CDS | 35.0% | |
| TCCTGTTAAATCATGTGACA+CGG | + | chr2_4:9102910-9102929 | Msa0313680:intron | 35.0% | |
| !! | GTTGATTATGAGTGGATTAG+AGG | + | chr2_4:9102969-9102988 | Msa0313680:intron | 35.0% |
| TAAAACATTGCCCAAAAACG+AGG | + | chr2_4:9102994-9103013 | Msa0313680:intron | 35.0% | |
| ACAGTTAAACCATGAATCTC+CGG | - | chr2_4:9103195-9103214 | None:intergenic | 35.0% | |
| TCAGACAATGTAGATTGTAG+AGG | - | chr2_4:9103299-9103318 | None:intergenic | 35.0% | |
| TATGAATTCCAGATGCAGTA+TGG | + | chr2_4:9103354-9103373 | Msa0313680:CDS | 35.0% | |
| !! | GGATGTATGATGCCTTATTT+AGG | + | chr2_4:9103570-9103589 | Msa0313680:intron | 35.0% |
| !! | ATGATGCCTTATTTAGGTGA+CGG | + | chr2_4:9103576-9103595 | Msa0313680:intron | 35.0% |
| ATTTCAACAATGATCCGTTG+TGG | + | chr2_4:9103607-9103626 | Msa0313680:CDS | 35.0% | |
| !!! | TGATGCTATTTTGTCCACAA+CGG | - | chr2_4:9103624-9103643 | None:intergenic | 35.0% |
| ATCTTCCTCATTAACAATGG+AGG | + | chr2_4:9103643-9103662 | Msa0313680:CDS | 35.0% | |
| ! | TATAGAAGTTTTTGCGCACA+AGG | + | chr2_4:9103982-9104001 | Msa0313680:CDS | 35.0% |
| ! | ATTTTCTATTGGGGATTAGG+AGG | - | chr2_4:9104067-9104086 | None:intergenic | 35.0% |
| !! | TTTGGTGCATTTTATAGTGG+AGG | + | chr2_4:9104151-9104170 | Msa0313680:three_prime_UTR | 35.0% |
| ! | TTATAGTGGAGGACATGTAT+AGG | + | chr2_4:9104162-9104181 | Msa0313680:three_prime_UTR | 35.0% |
| ! | CAAGTTTTCACTGTAAGCTC+CGG | - | chr2_4:9101003-9101022 | None:intergenic | 40.0% |
| AGCTTACAGTGAAAACTTGC+CGG | + | chr2_4:9101004-9101023 | Msa0313680:CDS | 40.0% | |
| ! | TTGCCGGTGATTTGTATTGT+TGG | + | chr2_4:9101020-9101039 | Msa0313680:CDS | 40.0% |
| CCTCCAACAATACAAATCAC+CGG | - | chr2_4:9101026-9101045 | None:intergenic | 40.0% | |
| TGACTCAAATTTCTCACTGG+AGG | + | chr2_4:9101311-9101330 | Msa0313680:intron | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | - | chr2_4:9101485-9101504 | None:intergenic | 40.0% | |
| AGCATAGGTTGTAATCTTCC+TGG | + | chr2_4:9101739-9101758 | Msa0313680:CDS | 40.0% | |
| AAAGTTGGATGAGGAATTCC+AGG | - | chr2_4:9101760-9101779 | None:intergenic | 40.0% | |
| ! | TTCCTCATCCAACTTTTGCT+AGG | + | chr2_4:9101764-9101783 | Msa0313680:CDS | 40.0% |
| ! | TCCTCATCCAACTTTTGCTA+GGG | + | chr2_4:9101765-9101784 | Msa0313680:CDS | 40.0% |
| GGTGCAAGAAAAAATGGAAC+AGG | - | chr2_4:9101793-9101812 | None:intergenic | 40.0% | |
| TCGTTCATGAGGTGTAAGTT+CGG | + | chr2_4:9102003-9102022 | Msa0313680:intron | 40.0% | |
| AGTTTGACCTTGGAACTTCA+AGG | + | chr2_4:9102033-9102052 | Msa0313680:intron | 40.0% | |
| GTTTGACCTTGGAACTTCAA+GGG | + | chr2_4:9102034-9102053 | Msa0313680:intron | 40.0% | |
| TATATGCAGGGTAAGCAATC+AGG | + | chr2_4:9102214-9102233 | Msa0313680:intron | 40.0% | |
| TTCTGGTACAAGTCCTTTAC+CGG | - | chr2_4:9102396-9102415 | None:intergenic | 40.0% | |
| CCGATTGGGCTGTATAATTA+AGG | - | chr2_4:9102573-9102592 | None:intergenic | 40.0% | |
| TAAGGAAAGACCATTGCCAA+TGG | - | chr2_4:9102600-9102619 | None:intergenic | 40.0% | |
| ATTGGCAATGGTCTTTCCTT+AGG | + | chr2_4:9102599-9102618 | Msa0313680:CDS | 40.0% | |
| CAATGGTCTTTCCTTAGGTT+GGG | + | chr2_4:9102604-9102623 | Msa0313680:CDS | 40.0% | |
| !!! | TTCCTTAGGTTGGGTTTTCA+TGG | + | chr2_4:9102613-9102632 | Msa0313680:CDS | 40.0% |
| ACCGTGTCACATGATTTAAC+AGG | - | chr2_4:9102914-9102933 | None:intergenic | 40.0% | |
| !! | CCGTTATGTTCCTCGTTTTT+GGG | - | chr2_4:9103007-9103026 | None:intergenic | 40.0% |
| CCCAAAAACGAGGAACATAA+CGG | + | chr2_4:9103004-9103023 | Msa0313680:intron | 40.0% | |
| ! | ACCGTTATGTTCCTCGTTTT+TGG | - | chr2_4:9103008-9103027 | None:intergenic | 40.0% |
| ACTGCTGTAATAGCTGAAAC+CGG | + | chr2_4:9103173-9103192 | Msa0313680:CDS | 40.0% | |
| CAATTGATCCATACTGCATC+TGG | - | chr2_4:9103365-9103384 | None:intergenic | 40.0% | |
| CAGATGCAGTATGGATCAAT+TGG | + | chr2_4:9103363-9103382 | Msa0313680:CDS | 40.0% | |
| TGCAGTATGGATCAATTGGT+TGG | + | chr2_4:9103367-9103386 | Msa0313680:CDS | 40.0% | |
| TAATGAACAGGCTTACTTGC+TGG | - | chr2_4:9103532-9103551 | None:intergenic | 40.0% | |
| TTTGTGAGTGCCATCCATAA+TGG | + | chr2_4:9103733-9103752 | Msa0313680:CDS | 40.0% | |
| CAGCAAAGAGTTGCTAGAAT+GGG | + | chr2_4:9104012-9104031 | Msa0313680:CDS | 40.0% | |
| AGCAAAGAGTTGCTAGAATG+GGG | + | chr2_4:9104013-9104032 | Msa0313680:CDS | 40.0% | |
| ACAACAAAGTGCAACACTTG+AGG | - | chr2_4:9104254-9104273 | None:intergenic | 40.0% | |
| ATCGTTCCATCACAGGTGAA+GGG | - | chr2_4:9100741-9100760 | None:intergenic | 45.0% | |
| ! | TTCACCTGTGATGGAACGAT+GGG | + | chr2_4:9100741-9100760 | Msa0313680:CDS | 45.0% |
| AATGCTGGATATGCTGCTGA+CGG | + | chr2_4:9100900-9100919 | Msa0313680:CDS | 45.0% | |
| ! | GTTGTGACTTTTACAGTCGG+TGG | + | chr2_4:9100954-9100973 | Msa0313680:CDS | 45.0% |
| AGTATTCTCAACGCCATTGC+CGG | + | chr2_4:9100981-9101000 | Msa0313680:CDS | 45.0% | |
| ! | CCGGTGATTTGTATTGTTGG+AGG | + | chr2_4:9101023-9101042 | Msa0313680:CDS | 45.0% |
| !! | CTCCACTTTGGTGCCATTAA+TGG | + | chr2_4:9101366-9101385 | Msa0313680:intron | 45.0% |
| TGCCATTAATGGCACCAAAG+TGG | - | chr2_4:9101371-9101390 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | - | chr2_4:9101394-9101413 | None:intergenic | 45.0% |
| CACCAATGACACCATTGCTA+TGG | + | chr2_4:9101471-9101490 | Msa0313680:intron | 45.0% | |
| !! | TGCCATAGCAATGGTGTCAT+TGG | - | chr2_4:9101476-9101495 | None:intergenic | 45.0% |
| !!! | GGTGTGAATTTTTCAGGCAG+TGG | + | chr2_4:9101636-9101655 | Msa0313680:intron | 45.0% |
| TCAGGCAGTGGTGAATAACT+TGG | + | chr2_4:9101648-9101667 | Msa0313680:intron | 45.0% | |
| TCCCTAGCAAAAGTTGGATG+AGG | - | chr2_4:9101769-9101788 | None:intergenic | 45.0% | |
| TTCATGAGGTGTAAGTTCGG+TGG | + | chr2_4:9102006-9102025 | Msa0313680:intron | 45.0% | |
| CTTCATCCCTTGAAGTTCCA+AGG | - | chr2_4:9102043-9102062 | None:intergenic | 45.0% | |
| GCCAAAACTTAGGGTAGCAA+AGG | + | chr2_4:9102310-9102329 | Msa0313680:CDS | 45.0% | |
| ! | GCCTTTGCTACCCTAAGTTT+TGG | - | chr2_4:9102314-9102333 | None:intergenic | 45.0% |
| ! | AAAGGCACAGAAGGCTTTCA+TGG | + | chr2_4:9102328-9102347 | Msa0313680:CDS | 45.0% |
| ATGGAGTTTGCAGAAGCTAG+TGG | + | chr2_4:9102347-9102366 | Msa0313680:CDS | 45.0% | |
| CTGTCAGTACTAGCTACTGT+GGG | + | chr2_4:9102450-9102469 | Msa0313680:CDS | 45.0% | |
| TGTCAGTACTAGCTACTGTG+GGG | + | chr2_4:9102451-9102470 | Msa0313680:CDS | 45.0% | |
| GCAATGGTCTTTCCTTAGGT+TGG | + | chr2_4:9102603-9102622 | Msa0313680:CDS | 45.0% | |
| AGCCATGAAAACCCAACCTA+AGG | - | chr2_4:9102618-9102637 | None:intergenic | 45.0% | |
| GAAGAAAAACACCACAGCTG+TGG | + | chr2_4:9102667-9102686 | Msa0313680:CDS | 45.0% | |
| GTTGAACAGGAACTGCTAAG+TGG | + | chr2_4:9103146-9103165 | Msa0313680:intron | 45.0% | |
| TAGCTGAAACCGGAGATTCA+TGG | + | chr2_4:9103183-9103202 | Msa0313680:CDS | 45.0% | |
| ATGACTTACCCGCAATTCTC+AGG | - | chr2_4:9103233-9103252 | None:intergenic | 45.0% | |
| ! | GGATCAATTGGTTGGTCAGT+AGG | + | chr2_4:9103375-9103394 | Msa0313680:CDS | 45.0% |
| TGCTACTCTTGGATATGCAC+AGG | + | chr2_4:9103398-9103417 | Msa0313680:CDS | 45.0% | |
| AAGCGTGTGATTGCATGCAT+TGG | + | chr2_4:9103432-9103451 | Msa0313680:CDS | 45.0% | |
| ! | GTGATTGCATGCATTGGTGA+TGG | + | chr2_4:9103438-9103457 | Msa0313680:CDS | 45.0% |
| !!! | CATTGGTGATGGCAGTTTTC+AGG | + | chr2_4:9103449-9103468 | Msa0313680:CDS | 45.0% |
| TATGGATGGCACTCACAAAG+CGG | - | chr2_4:9103732-9103751 | None:intergenic | 45.0% | |
| ! | AGTGCCATCCATAATGGAGA+GGG | + | chr2_4:9103739-9103758 | Msa0313680:CDS | 45.0% |
| TTTCCCCTCTCCATTATGGA+TGG | - | chr2_4:9103746-9103765 | None:intergenic | 45.0% | |
| AGCATTTCCCCTCTCCATTA+TGG | - | chr2_4:9103750-9103769 | None:intergenic | 45.0% | |
| ! | ATAATGGAGAGGGGAAATGC+TGG | + | chr2_4:9103749-9103768 | Msa0313680:CDS | 45.0% |
| GTGAGTATAGGTACGTACAG+AGG | + | chr2_4:9103901-9103920 | Msa0313680:intron | 45.0% | |
| GAAGCAATTGCAACTGCTAC+TGG | + | chr2_4:9103935-9103954 | Msa0313680:CDS | 45.0% | |
| CCATTCTAGCAACTCTTTGC+TGG | - | chr2_4:9104014-9104033 | None:intergenic | 45.0% | |
| CCAGCAAAGAGTTGCTAGAA+TGG | + | chr2_4:9104011-9104030 | Msa0313680:CDS | 45.0% | |
| TCTATTGGGGATTAGGAGGA+CGG | - | chr2_4:9104063-9104082 | None:intergenic | 45.0% | |
| TGCAACACTTGAGGACAAGA+TGG | - | chr2_4:9104245-9104264 | None:intergenic | 45.0% | |
| !!! | TTCATTAATTAATTTATTTT+CGG | + | chr2_4:9103545-9103564 | Msa0313680:intron | 5.0% |
| !!! | TATAATTTGTATATTTAATT+TGG | + | chr2_4:9104133-9104152 | Msa0313680:three_prime_UTR | 5.0% |
| ATGGAACACAACTGGGAGGA+GGG | - | chr2_4:9100707-9100726 | None:intergenic | 50.0% | |
| TTCCATCACAGGTGAAGGGA+CGG | - | chr2_4:9100737-9100756 | None:intergenic | 50.0% | |
| CATCGTTCCATCACAGGTGA+AGG | - | chr2_4:9100742-9100761 | None:intergenic | 50.0% | |
| ! | CTTCACCTGTGATGGAACGA+TGG | + | chr2_4:9100740-9100759 | Msa0313680:CDS | 50.0% |
| TGCTGTAACGAGCTGAATGC+TGG | + | chr2_4:9100885-9100904 | Msa0313680:CDS | 50.0% | |
| TTCACTGTAAGCTCCGGCAA+TGG | - | chr2_4:9100997-9101016 | None:intergenic | 50.0% | |
| CGAAGCTCTTGCGAAAAGTC+AGG | - | chr2_4:9101104-9101123 | None:intergenic | 50.0% | |
| AATGGCACCAAAGTGGAGTC+CGG | - | chr2_4:9101364-9101383 | None:intergenic | 50.0% | |
| !! | GGTGCCATTAATGGCACCAA+TGG | + | chr2_4:9101375-9101394 | Msa0313680:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | - | chr2_4:9101382-9101401 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | - | chr2_4:9101403-9101422 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | - | chr2_4:9101408-9101427 | None:intergenic | 50.0% |
| CACACATCCCCACACATCAA+CGG | + | chr2_4:9101430-9101449 | Msa0313680:intron | 50.0% | |
| AATCCTGGCCGTTGATGTGT+GGG | - | chr2_4:9101441-9101460 | None:intergenic | 50.0% | |
| !! | AACGGCCAGGATTGGTTCTT+TGG | + | chr2_4:9101448-9101467 | Msa0313680:intron | 50.0% |
| ! | TGGTGCCAAAGAACCAATCC+TGG | - | chr2_4:9101456-9101475 | None:intergenic | 50.0% |
| AACTGACACGTGTCAGACAG+TGG | - | chr2_4:9101526-9101545 | None:intergenic | 50.0% | |
| GGCAGTGGTGAATAACTTGG+AGG | + | chr2_4:9101651-9101670 | Msa0313680:intron | 50.0% | |
| ACAGGGTCCCTAGCAAAAGT+TGG | - | chr2_4:9101775-9101794 | None:intergenic | 50.0% | |
| TGCAGGGTAAGCAATCAGGA+AGG | + | chr2_4:9102218-9102237 | Msa0313680:intron | 50.0% | |
| GCAGGGTAAGCAATCAGGAA+GGG | + | chr2_4:9102219-9102238 | Msa0313680:intron | 50.0% | |
| AGAAGCAGCTGTCGAAGAAG+CGG | + | chr2_4:9102244-9102263 | Msa0313680:CDS | 50.0% | |
| ! | TAGGGTAGCAAAGGCACAGA+AGG | + | chr2_4:9102319-9102338 | Msa0313680:CDS | 50.0% |
| CCAATAGCTGTAATGCCCTC+CGG | + | chr2_4:9102374-9102393 | Msa0313680:CDS | 50.0% | |
| GGTACAAGTCCTTTACCGGA+GGG | - | chr2_4:9102392-9102411 | None:intergenic | 50.0% | |
| TGGTACAAGTCCTTTACCGG+AGG | - | chr2_4:9102393-9102412 | None:intergenic | 50.0% | |
| GCTGTCAGTACTAGCTACTG+TGG | + | chr2_4:9102449-9102468 | Msa0313680:CDS | 50.0% | |
| TTGCCAATGGTGACCCGATT+GGG | - | chr2_4:9102587-9102606 | None:intergenic | 50.0% | |
| ATTGCCAATGGTGACCCGAT+TGG | - | chr2_4:9102588-9102607 | None:intergenic | 50.0% | |
| AATCGGGTCACCATTGGCAA+TGG | + | chr2_4:9102587-9102606 | Msa0313680:CDS | 50.0% | |
| ACGGTAATTCTCCACAGCTG+TGG | - | chr2_4:9102681-9102700 | None:intergenic | 50.0% | |
| CCGGCGGAACATAGATTCTA+CGG | - | chr2_4:9102700-9102719 | None:intergenic | 50.0% | |
| CCGTAGAATCTATGTTCCGC+CGG | + | chr2_4:9102697-9102716 | Msa0313680:CDS | 50.0% | |
| CGTAGAATCTATGTTCCGCC+GGG | + | chr2_4:9102698-9102717 | Msa0313680:CDS | 50.0% | |
| !! | CATTCCTTTGAAGCGGGAGA+AGG | + | chr2_4:9102721-9102740 | Msa0313680:CDS | 50.0% |
| TCATCCTTCTCCCGCTTCAA+AGG | - | chr2_4:9102728-9102747 | None:intergenic | 50.0% | |
| CTCCGTTTGCCTGAGAATTG+CGG | + | chr2_4:9103221-9103240 | Msa0313680:CDS | 50.0% | |
| TCCGTTTGCCTGAGAATTGC+GGG | + | chr2_4:9103222-9103241 | Msa0313680:CDS | 50.0% | |
| ACCCGCAATTCTCAGGCAAA+CGG | - | chr2_4:9103226-9103245 | None:intergenic | 50.0% | |
| !! | TGGTCAGTAGGTGCTACTCT+TGG | + | chr2_4:9103387-9103406 | Msa0313680:CDS | 50.0% |
| CCTGTGCCGTCACCTAAATA+AGG | - | chr2_4:9103585-9103604 | None:intergenic | 50.0% | |
| ! | CCTTATTTAGGTGACGGCAC+AGG | + | chr2_4:9103582-9103601 | Msa0313680:intron | 50.0% |
| ATGGATGGCACTCACAAAGC+GGG | - | chr2_4:9103731-9103750 | None:intergenic | 50.0% | |
| ! | GAGTGCCATCCATAATGGAG+AGG | + | chr2_4:9103738-9103757 | Msa0313680:CDS | 50.0% |
| ! | GTGCCATCCATAATGGAGAG+GGG | + | chr2_4:9103740-9103759 | Msa0313680:CDS | 50.0% |
| AGTTGCTAGAATGGGGATCC+CGG | + | chr2_4:9104020-9104039 | Msa0313680:CDS | 50.0% | |
| GATGGAACACAACTGGGAGG+AGG | - | chr2_4:9100708-9100727 | None:intergenic | 55.0% | |
| ACGGCGGATGGAACACAACT+GGG | - | chr2_4:9100714-9100733 | None:intergenic | 55.0% | |
| ATCACAGGTGAAGGGACGGA+CGG | - | chr2_4:9100733-9100752 | None:intergenic | 55.0% | |
| ! | ACCTGTGATGGAACGATGGG+CGG | + | chr2_4:9100744-9100763 | Msa0313680:CDS | 55.0% |
| CGCGATGTCTTCTCTGTTCC+CGG | + | chr2_4:9100801-9100820 | Msa0313680:CDS | 55.0% | |
| TGTCAGACCGGACTCCACTT+TGG | + | chr2_4:9101354-9101373 | Msa0313680:intron | 55.0% | |
| GGATGTGTGTGTGTGTGTGG+TGG | - | chr2_4:9101419-9101438 | None:intergenic | 55.0% | |
| TGGGGATGTGTGTGTGTGTG+TGG | - | chr2_4:9101422-9101441 | None:intergenic | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+GGG | - | chr2_4:9101440-9101459 | None:intergenic | 55.0% | |
| CAATCCTGGCCGTTGATGTG+TGG | - | chr2_4:9101442-9101461 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | + | chr2_4:9101440-9101459 | Msa0313680:intron | 55.0% | |
| ACAGTGGCATGGGTCTGACA+GGG | - | chr2_4:9101510-9101529 | None:intergenic | 55.0% | |
| CACGTGTCAGACAGTGGCAT+GGG | - | chr2_4:9101520-9101539 | None:intergenic | 55.0% | |
| ACACGTGTCAGACAGTGGCA+TGG | - | chr2_4:9101521-9101540 | None:intergenic | 55.0% | |
| CGGTGGTACGAGTTTGACCT+TGG | + | chr2_4:9102023-9102042 | Msa0313680:intron | 55.0% | |
| AGCTGTGAAGCCAGTGATCG+TGG | + | chr2_4:9102283-9102302 | Msa0313680:CDS | 55.0% | |
| GCTGTGAAGCCAGTGATCGT+GGG | + | chr2_4:9102284-9102303 | Msa0313680:CDS | 55.0% | |
| !! | CCGGAGGGCATTACAGCTAT+TGG | - | chr2_4:9102377-9102396 | None:intergenic | 55.0% |
| GCTGTAATGCCCTCCGGTAA+AGG | + | chr2_4:9102380-9102399 | Msa0313680:CDS | 55.0% | |
| TCCCGCTTCAAAGGAATGCC+CGG | - | chr2_4:9102719-9102738 | None:intergenic | 55.0% | |
| GGGGAAATGCTGGACTGCTA+AGG | + | chr2_4:9103759-9103778 | Msa0313680:CDS | 55.0% | |
| GTTGCTAGAATGGGGATCCC+GGG | + | chr2_4:9104021-9104040 | Msa0313680:CDS | 55.0% | |
| GCGGATGGAACACAACTGGG+AGG | - | chr2_4:9100711-9100730 | None:intergenic | 60.0% | |
| GACGGCGGATGGAACACAAC+TGG | - | chr2_4:9100715-9100734 | None:intergenic | 60.0% | |
| GTCCGTCCCTTCACCTGTGA+TGG | + | chr2_4:9100732-9100751 | Msa0313680:CDS | 60.0% | |
| TGACCACCTGATCGCTGAGC+CGG | + | chr2_4:9100845-9100864 | Msa0313680:CDS | 60.0% | |
| CAACCGACGAGGTTGAGCTC+CGG | - | chr2_4:9100867-9100886 | None:intergenic | 60.0% | |
| GCTCGTTACAGCAACCGACG+AGG | - | chr2_4:9100878-9100897 | None:intergenic | 60.0% | |
| TGACGGTTACGCACGTGCCA+AGG | + | chr2_4:9100917-9100936 | Msa0313680:CDS | 60.0% | |
| GACGGTTACGCACGTGCCAA+GGG | + | chr2_4:9100918-9100937 | Msa0313680:CDS | 60.0% | |
| TACGCACGTGCCAAGGGAGT+TGG | + | chr2_4:9100924-9100943 | Msa0313680:CDS | 60.0% | |
| AACACACGCGCCAACTCCCT+TGG | - | chr2_4:9100937-9100956 | None:intergenic | 60.0% | |
| ATCCCCACACATCAACGGCC+AGG | + | chr2_4:9101435-9101454 | Msa0313680:intron | 60.0% | |
| GACAGTGGCATGGGTCTGAC+AGG | - | chr2_4:9101511-9101530 | None:intergenic | 60.0% | |
| GTGAAGCCAGTGATCGTGGG+CGG | + | chr2_4:9102287-9102306 | Msa0313680:CDS | 60.0% | |
| TGAAGCCAGTGATCGTGGGC+GGG | + | chr2_4:9102288-9102307 | Msa0313680:CDS | 60.0% | |
| TCGTGGGCGGGCCAAAACTT+AGG | + | chr2_4:9102300-9102319 | Msa0313680:CDS | 60.0% | |
| CGTGGGCGGGCCAAAACTTA+GGG | + | chr2_4:9102301-9102320 | Msa0313680:CDS | 60.0% | |
| CAGCCCAATCGGGTCACCAT+TGG | + | chr2_4:9102581-9102600 | Msa0313680:CDS | 60.0% | |
| CGCTTCAAAGGAATGCCCGG+CGG | - | chr2_4:9102716-9102735 | None:intergenic | 60.0% | |
| ! | CGCCGGGCATTCCTTTGAAG+CGG | + | chr2_4:9102714-9102733 | Msa0313680:CDS | 60.0% |
| !! | GCCGGGCATTCCTTTGAAGC+GGG | + | chr2_4:9102715-9102734 | Msa0313680:CDS | 60.0% |
| GCTGTTAGCAGCAGCAACCC+GGG | - | chr2_4:9104041-9104060 | None:intergenic | 60.0% | |
| GGCTGTTAGCAGCAGCAACC+CGG | - | chr2_4:9104042-9104061 | None:intergenic | 60.0% | |
| ACAGGTGAAGGGACGGACGG+CGG | - | chr2_4:9100730-9100749 | None:intergenic | 65.0% | |
| GCCGCCCATCGTTCCATCAC+AGG | - | chr2_4:9100748-9100767 | None:intergenic | 65.0% | |
| !! | TCTCAACGAGGCGCCGTGCA+AGG | - | chr2_4:9100773-9100792 | None:intergenic | 65.0% |
| GCACGGCGCCTCGTTGAGAT+CGG | + | chr2_4:9100774-9100793 | Msa0313680:CDS | 65.0% | |
| CGCGAACGCCGATCTCAACG+AGG | - | chr2_4:9100785-9100804 | None:intergenic | 65.0% | |
| TGAGCTCCGGCTCAGCGATC+AGG | - | chr2_4:9100854-9100873 | None:intergenic | 65.0% | |
| GAGCCGGAGCTCAACCTCGT+CGG | + | chr2_4:9100861-9100880 | Msa0313680:CDS | 65.0% | |
| TTTGGCCCGCCCACGATCAC+TGG | - | chr2_4:9102296-9102315 | None:intergenic | 65.0% | |
| GTGAAGGGACGGACGGCGGA+TGG | - | chr2_4:9100726-9100745 | None:intergenic | 70.0% | |
| CGATGGGCGGCCACCTTGCA+CGG | + | chr2_4:9100757-9100776 | Msa0313680:CDS | 70.0% | |
| !! | CAACGAGGCGCCGTGCAAGG+TGG | - | chr2_4:9100770-9100789 | None:intergenic | 70.0% |
| GCTCCGGCTCAGCGATCAGG+TGG | - | chr2_4:9100851-9100870 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9100541 | 9104364 | 9100541 | ID=Msa0313680;Name=Msa0313680 |
| chr2_4 | mRNA | 9100541 | 9104364 | 9100541 | ID=Msa0313680-mRNA-1;Parent=Msa0313680;Name=Msa0313680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=143|1|1|1|1|1|7|283|586 |
| chr2_4 | exon | 9100541 | 9101151 | 9100541 | ID=Msa0313680-mRNA-1:exon:3515;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9101652 | 9101815 | 9101652 | ID=Msa0313680-mRNA-1:exon:3516;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9102223 | 9102784 | 9102223 | ID=Msa0313680-mRNA-1:exon:3517;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9103155 | 9103243 | 9103155 | ID=Msa0313680-mRNA-1:exon:3518;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9103353 | 9103470 | 9103353 | ID=Msa0313680-mRNA-1:exon:3519;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9103592 | 9103780 | 9103592 | ID=Msa0313680-mRNA-1:exon:3520;Parent=Msa0313680-mRNA-1 |
| chr2_4 | exon | 9103911 | 9104364 | 9103911 | ID=Msa0313680-mRNA-1:exon:3521;Parent=Msa0313680-mRNA-1 |
| chr2_4 | five_prime_UTR | 9100541 | 9100683 | 9100541 | ID=Msa0313680-mRNA-1:five_prime_utr;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9100684 | 9101151 | 9100684 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9101652 | 9101815 | 9101652 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9102223 | 9102784 | 9102223 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9103155 | 9103243 | 9103155 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9103353 | 9103470 | 9103353 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9103592 | 9103780 | 9103592 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | CDS | 9103911 | 9104081 | 9103911 | ID=Msa0313680-mRNA-1:cds;Parent=Msa0313680-mRNA-1 |
| chr2_4 | three_prime_UTR | 9104082 | 9104364 | 9104082 | ID=Msa0313680-mRNA-1:three_prime_utr;Parent=Msa0313680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
