AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316090 MtrunA17_Chr8g0345941 95.126 636 11 1 1 636 1 616 0.0 1251
Msa1316090 MtrunA17_Chr1g0189131 71.022 597 149 3 41 636 35 608 0.0 857
Msa1316090 MtrunA17_Chr6g0453261 39.319 529 271 11 90 610 267 753 1.92e-112 354
Msa1316090 MtrunA17_Chr3g0126911 38.698 553 271 15 83 608 134 645 2.98e-112 351
Msa1316090 MtrunA17_Chr4g0051911 28.774 563 283 21 89 609 481 967 1.14e-51 192
Msa1316090 MtrunA17_Chr2g0288461 28.962 549 254 19 90 607 658 1101 2.13e-48 182
Msa1316090 MtrunA17_Chr5g0411441 23.593 462 285 18 89 523 190 610 4.53e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316090 AT1G32900.1 68.809 638 169 6 1 636 1 610 0.0 852
Msa1316090 AT3G01180.1 41.021 529 262 11 90 610 301 787 1.29e-114 361
Msa1316090 AT5G24300.2 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1316090 AT5G24300.1 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1316090 AT4G18240.1 28.929 560 282 19 89 607 541 1025 1.08e-51 192
Msa1316090 AT1G11720.1 27.757 544 272 15 90 610 594 1039 3.59e-51 191
Msa1316090 AT1G11720.2 27.757 544 272 15 90 610 646 1091 3.94e-51 191

Find 165 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCCTCCTTAATAAAT+TGG 0.148032 8_4:-15837585 None:intergenic
TCCAATTCCACTCCTTTATC+TGG 0.155027 8_4:-15837160 None:intergenic
AGCCATTCCCCAATTTATTA+AGG 0.277974 8_4:+15837576 Msa1316090:CDS
CTTCGCCGAACTGGTGTTAC+TGG 0.300119 8_4:+15837190 Msa1316090:CDS
AACATCCTCCTTAATAAATT+GGG 0.300262 8_4:-15837584 None:intergenic
TCATAAAGGGCACTAGCTTT+TGG 0.300486 8_4:-15834220 None:intergenic
GGAGGAAGTGCTGCTAAGTT+TGG 0.312861 8_4:+15838905 Msa1316090:CDS
CTGCTAAGTTTGGGAGTTCC+TGG 0.315078 8_4:+15838915 Msa1316090:CDS
AAGCAACACAATAATATTTC+AGG 0.322726 8_4:+15834271 Msa1316090:five_prime_UTR
ACAAAGGCCCTTGCAGTCTA+TGG 0.324992 8_4:+15838407 Msa1316090:CDS
AACAATAATCTATCATTCTT+AGG 0.334430 8_4:-15839154 None:intergenic
AGCTCATTCGACTTCATAGA+TGG 0.344129 8_4:+15836937 Msa1316090:CDS
TGGAGCAAAACTGGTGGTTT+AGG 0.348494 8_4:+15835195 Msa1316090:CDS
ACCAGCCAAATGGCATATTT+AGG 0.351605 8_4:+15836690 Msa1316090:CDS
CTCAATCTCTTGAAGGTTCA+TGG 0.355476 8_4:+15839039 Msa1316090:three_prime_UTR
GTTGAACTAATTAAGCTTCA+AGG 0.357647 8_4:-15834313 None:intergenic
TTTATCACTCTCTAGGCTAA+TGG 0.363828 8_4:+15835661 Msa1316090:intron
GATCGTCTGAAATTGAAAAC+TGG 0.364569 8_4:+15838010 Msa1316090:CDS
TCTGAGTCCATTATGTGTAT+TGG 0.365017 8_4:-15835016 None:intergenic
ATAATCTTAACAGGCAGCTT+TGG 0.366584 8_4:+15836460 Msa1316090:intron
TGCTAGTCTCAATCTCTTGA+AGG 0.366692 8_4:+15839032 Msa1316090:intron
CCAAGCAGAAGTTGGATTGC+CGG 0.369816 8_4:+15837480 Msa1316090:CDS
GGTAGACTTGAAGAGCAAAA+AGG 0.369948 8_4:+15837535 Msa1316090:CDS
TTACATCTTTGTTCTAATCA+TGG 0.371499 8_4:-15838999 None:intergenic
GCATGGCTCAAGATCTTTCA+TGG 0.373044 8_4:+15838462 Msa1316090:CDS
TTAGTGATGTTCATTCATAA+AGG 0.375163 8_4:-15834234 None:intergenic
ACTAGTTCTTGAGCATAGTA+TGG 0.376634 8_4:-15837130 None:intergenic
ATACACAGGTTTAAATTCCT+TGG 0.380334 8_4:-15839102 None:intergenic
TCCCTGTGTGCTTCTTTACC+TGG 0.382198 8_4:+15834343 Msa1316090:five_prime_UTR
ATTCCTCTCATTGCTTTCAT+TGG 0.382733 8_4:+15837514 Msa1316090:CDS
CCCAGATAAAGGAGTGGAAT+TGG 0.385440 8_4:+15837159 Msa1316090:CDS
TTGATCATTTCTGCAAAAGT+TGG 0.386157 8_4:-15838434 None:intergenic
AGAAAAGCCAATACACATAA+TGG 0.386744 8_4:+15835009 Msa1316090:CDS
GGTGGTTTAGGAGATGTTCT+AGG 0.388108 8_4:+15835207 Msa1316090:CDS
ATTTCTTCTCCATCAATTCC+AGG 0.392626 8_4:-15838945 None:intergenic
TGAAATATTATTGTGTTGCT+TGG 0.403707 8_4:-15834269 None:intergenic
TATGCCATTTCTTAGGGAAC+AGG 0.404468 8_4:+15837713 Msa1316090:intron
GTACCAATTGTTGCCTCAAC+AGG 0.406492 8_4:+15838165 Msa1316090:CDS
GCATTCCTAAATATGCCATT+TGG 0.407931 8_4:-15836695 None:intergenic
CCAATTCCACTCCTTTATCT+GGG 0.409765 8_4:-15837159 None:intergenic
GCAACTCCTCTAGCCTTGTC+AGG 0.409835 8_4:-15837782 None:intergenic
GGCAGTGAACCTGGAATTGA+TGG 0.411509 8_4:+15838936 Msa1316090:CDS
TAGTGATGTTCATTCATAAA+GGG 0.412225 8_4:-15834233 None:intergenic
GGAGTTCCTGGCAGTGAACC+TGG 0.416485 8_4:+15838927 Msa1316090:CDS
CTAGTGTCAGGCCCAGATAA+AGG 0.418565 8_4:+15837148 Msa1316090:CDS
CCACAAATTATAATACCTTT+CGG 0.419141 8_4:-15835135 None:intergenic
CTTGGAGTGCTTCTTTCAGA+AGG 0.419569 8_4:-15837462 None:intergenic
GGCATGAATTTGATCTTTGT+TGG 0.419673 8_4:+15835156 Msa1316090:CDS
CCGAAAGGTATTATAATTTG+TGG 0.422942 8_4:+15835135 Msa1316090:CDS
TGCCTCAACAGGTGGATTAG+TGG 0.426815 8_4:+15838176 Msa1316090:CDS
TGCATGCAGTCAGTCCAATC+TGG 0.428726 8_4:+15837988 Msa1316090:intron
TATCCCACGCATCTTTGTAT+TGG 0.430966 8_4:-15835717 None:intergenic
CAATTTCAGACGATCCAGAT+TGG 0.431197 8_4:-15838002 None:intergenic
TCACCCTATATTTCTTGAAA+AGG 0.432618 8_4:+15835951 Msa1316090:CDS
TTCTTTCATTGCTTTAAAAG+AGG 0.435407 8_4:+15835907 Msa1316090:CDS
GGTGTTACTGGTATTGTAAA+TGG 0.437797 8_4:+15837202 Msa1316090:CDS
AGTAAGCTTACTGCTAATAC+TGG 0.437855 8_4:-15835240 None:intergenic
CCACAAGGCTCAAATCTACT+AGG 0.441652 8_4:-15837863 None:intergenic
AAATATTTCTCAGGACCATA+TGG 0.444026 8_4:+15836515 Msa1316090:CDS
CGATCGGAGTGAGCAAGTTA+AGG 0.447693 8_4:-15839273 None:intergenic
CGCTGTGGATCCGGCTGATG+TGG 0.450888 8_4:+15838364 Msa1316090:CDS
CCACCTGTTGAGGCAACAAT+TGG 0.451085 8_4:-15838168 None:intergenic
TTAGCACACATGATAATTGC+AGG 0.452499 8_4:+15837821 Msa1316090:CDS
GTTGGTCCATGGAGCAAAAC+TGG 0.452504 8_4:+15835186 Msa1316090:CDS
TGCAATTATCATGTGTGCTA+AGG 0.453551 8_4:-15837819 None:intergenic
TTAAACCTGTGTATCTAACT+TGG 0.454001 8_4:+15839111 Msa1316090:three_prime_UTR
GAGGAAGTGCTGCTAAGTTT+GGG 0.458467 8_4:+15838906 Msa1316090:CDS
ACTTATAATTACTCCATCAC+TGG 0.459353 8_4:-15839071 None:intergenic
ACCTTCCACGTGAAGTGCAT+TGG 0.462787 8_4:-15834192 None:intergenic
TTAGTGTGACGCTGTGGATC+CGG 0.465682 8_4:+15838355 Msa1316090:intron
TATTATTACTTCAACATTGA+AGG 0.465906 8_4:-15838238 None:intergenic
ACTTCCTCCCACTTCTTAGC+AGG 0.470539 8_4:-15838891 None:intergenic
TTTCAAGTAGCATGAGATAA+GGG 0.470650 8_4:-15836660 None:intergenic
CCAAGGCAGATTTGCATTCG+CGG 0.473556 8_4:+15836879 Msa1316090:CDS
CTCCTTAATAAATTGGGGAA+TGG 0.479356 8_4:-15837578 None:intergenic
GACAACATTCTTCGCCGAAC+TGG 0.480449 8_4:+15837181 Msa1316090:CDS
TGTTTATTACAGGTAAAAGT+AGG 0.480821 8_4:+15835862 Msa1316090:intron
GTTATGTATTTGTCAGTGGA+TGG 0.482006 8_4:-15837247 None:intergenic
ACAGTCAAAGAAGGTTTCAC+TGG 0.487245 8_4:+15838201 Msa1316090:CDS
AAAATCAACTGGATGAAAGC+TGG 0.487870 8_4:+15837073 Msa1316090:CDS
TTAGACTCACATGAGATAGT+TGG 0.490478 8_4:-15834958 None:intergenic
TAGAACTCCAATTAAAATGA+AGG 0.490575 8_4:+15835068 Msa1316090:CDS
ACGAGCAATAAATATTTCTC+AGG 0.491007 8_4:+15836506 Msa1316090:CDS
ATCTTTGTTGGAACTGAGGT+TGG 0.492697 8_4:+15835168 Msa1316090:CDS
AAATGAAGGCAGTGAAATCA+AGG 0.495094 8_4:+15835082 Msa1316090:CDS
TCAATTCCAGGTTCACTGCC+AGG 0.495114 8_4:-15838933 None:intergenic
AGGTTTCACTGGATTTCAGA+TGG 0.496834 8_4:+15838212 Msa1316090:CDS
AGTTAAGGAGTCGAGTGATA+AGG 0.498172 8_4:-15839258 None:intergenic
GCAGTGAAATCAAGGAGAAA+AGG 0.499059 8_4:+15835090 Msa1316090:CDS
AGGTATGTTAAACCAGTTGT+TGG 0.500872 8_4:+15837046 Msa1316090:intron
TGGTAATCATCTCCCGTGGC+AGG 0.502745 8_4:-15836086 None:intergenic
TAAAACGTAGTTGATTGTCT+TGG 0.510188 8_4:-15836106 None:intergenic
TTGGAGTGCTTCTTTCAGAA+GGG 0.511966 8_4:-15837461 None:intergenic
TCCTAAATATGCCATTTGGC+TGG 0.513729 8_4:-15836691 None:intergenic
CCTAGTAGATTTGAGCCTTG+TGG 0.515224 8_4:+15837863 Msa1316090:CDS
CCGGCAATCCAACTTCTGCT+TGG 0.516075 8_4:-15837480 None:intergenic
AAATCTATGTACCAGCCAAA+TGG 0.518875 8_4:+15836680 Msa1316090:CDS
GCAATTATCATGTGTGCTAA+GGG 0.520362 8_4:-15837818 None:intergenic
TGGAGAAGAAATTGCTCCAC+AGG 0.521835 8_4:+15838956 Msa1316090:CDS
GAAGCACTCCAAGCAGAAGT+TGG 0.523874 8_4:+15837472 Msa1316090:CDS
GGCAGCTTTGGAAGCAGCAA+GGG 0.524840 8_4:+15836472 Msa1316090:intron
ATTTCAAGTAGCATGAGATA+AGG 0.525167 8_4:-15836661 None:intergenic
GCTATTGCATCCACATCAGC+CGG 0.525934 8_4:-15838374 None:intergenic
TTGGAACTGAGGTTGGTCCA+TGG 0.530234 8_4:+15835175 Msa1316090:CDS
AGAAATTGCTCCACAGGCAA+AGG 0.537424 8_4:+15838962 Msa1316090:CDS
CCGCGAATGCAAATCTGCCT+TGG 0.538259 8_4:-15836879 None:intergenic
CTCATAGAACCAAGTCTCAT+CGG 0.538517 8_4:-15834988 None:intergenic
CAATACCAGTAACACCAGTT+CGG 0.539892 8_4:-15837195 None:intergenic
TATGCTCAAGAACTAGTGTC+AGG 0.557035 8_4:+15837136 Msa1316090:CDS
AAAATTTATGGACCTGCCAC+GGG 0.558373 8_4:+15836074 Msa1316090:CDS
CTTATAATTACTCCATCACT+GGG 0.560728 8_4:-15839070 None:intergenic
TTAGTGGACACAGTCAAAGA+AGG 0.561216 8_4:+15838192 Msa1316090:CDS
CCAATTGTTGCCTCAACAGG+TGG 0.561384 8_4:+15838168 Msa1316090:CDS
GGTTTCACTGGATTTCAGAT+GGG 0.561885 8_4:+15838213 Msa1316090:CDS
CATTCCCCAATTTATTAAGG+AGG 0.565255 8_4:+15837579 Msa1316090:CDS
TCCAATGCACTTCACGTGGA+AGG 0.568774 8_4:+15834191 Msa1316090:five_prime_UTR
ATGGAACTTCACCCCAGTGA+TGG 0.572735 8_4:+15839058 Msa1316090:three_prime_UTR
GGCTCAAGATCTTTCATGGA+AGG 0.575124 8_4:+15838466 Msa1316090:CDS
AAAACAGCACCGATGAGACT+TGG 0.575958 8_4:+15834979 Msa1316090:CDS
TTGGAGTTCCATAGACTGCA+AGG 0.578650 8_4:-15838415 None:intergenic
ACTTTCCAAGTTAGATACAC+AGG 0.578848 8_4:-15839116 None:intergenic
ATTAGGGACCTGCTAAGAAG+TGG 0.580093 8_4:+15838883 Msa1316090:intron
CGTCGCTAATGATTGGCACA+CGG 0.584845 8_4:+15836637 Msa1316090:CDS
GGATACAAGTGTAACAATTG+AGG 0.586203 8_4:+15835735 Msa1316090:CDS
AGGCAGCTTTGGAAGCAGCA+AGG 0.587036 8_4:+15836471 Msa1316090:intron
TACTGGTATTGTAAATGGCA+TGG 0.587387 8_4:+15837207 Msa1316090:CDS
AGAAAGAATGTTATGCCGAA+AGG 0.592828 8_4:+15835120 Msa1316090:CDS
GACAGTTATGTATTTGTCAG+TGG 0.592989 8_4:-15837251 None:intergenic
CAGCTACAAGCTATGCGCTA+CGG 0.593914 8_4:+15837893 Msa1316090:CDS
AAGCTTACTGCTAATACTGG+TGG 0.598496 8_4:-15835237 None:intergenic
TGCCTTGGTATGCAATGTTG+TGG 0.598925 8_4:-15836864 None:intergenic
GCTCATTCGACTTCATAGAT+GGG 0.599348 8_4:+15836938 Msa1316090:CDS
ACATCCTCCTTAATAAATTG+GGG 0.602752 8_4:-15837583 None:intergenic
TCGTCTACTCAGGTATTGGA+AGG 0.602861 8_4:+15837433 Msa1316090:intron
TTTGATCTTTGTTGGAACTG+AGG 0.607065 8_4:+15835164 Msa1316090:CDS
AACCAGGTAAAGAAGCACAC+AGG 0.607887 8_4:-15834345 None:intergenic
GTTATAAAACCTGACAGAAG+AGG 0.608463 8_4:-15836130 None:intergenic
TTGGTCATAACGTGGAGCGA+TGG 0.612220 8_4:-15835698 None:intergenic
TAAGGAGTCGAGTGATAAGG+AGG 0.617316 8_4:-15839255 None:intergenic
TTTACTTTAGTGTGACGCTG+TGG 0.621041 8_4:+15838349 Msa1316090:intron
ATGACCAATACAAAGATGCG+TGG 0.624316 8_4:+15835713 Msa1316090:CDS
TTAGGGACCTGCTAAGAAGT+GGG 0.625550 8_4:+15838884 Msa1316090:intron
TCTATCCAATGCACTTCACG+TGG 0.626245 8_4:+15834187 Msa1316090:five_prime_UTR
GTCCACTAATCCACCTGTTG+AGG 0.626982 8_4:-15838178 None:intergenic
AGAAATGATCAAGAATTGCA+TGG 0.636503 8_4:+15838445 Msa1316090:CDS
ATGGCATGGATGTTCAAGAG+TGG 0.637982 8_4:+15837221 Msa1316090:CDS
ACCAGGTAAAGAAGCACACA+GGG 0.640310 8_4:-15834344 None:intergenic
TCATATCCTGACAAGGCTAG+AGG 0.641716 8_4:+15837776 Msa1316090:CDS
TGACCAATACAAAGATGCGT+GGG 0.645410 8_4:+15835714 Msa1316090:CDS
TGATTGAATTTGAAGGTTTG+GGG 0.645543 8_4:+15836038 Msa1316090:intron
TGAAATATCATATCCTGACA+AGG 0.646436 8_4:+15837769 Msa1316090:CDS
GGTTTAGGAGATGTTCTAGG+AGG 0.652378 8_4:+15835210 Msa1316090:CDS
TGGAGTTCCATAGACTGCAA+GGG 0.653724 8_4:-15838414 None:intergenic
CTACCAATGAAAGCAATGAG+AGG 0.658131 8_4:-15837517 None:intergenic
GTCTTGGTAATCATCTCCCG+TGG 0.663295 8_4:-15836090 None:intergenic
AGATAGTTGGTACATTGACA+TGG 0.665294 8_4:-15834945 None:intergenic
TCTTTGTATTGGTCATAACG+TGG 0.669620 8_4:-15835706 None:intergenic
GTCAGGCCCAGATAAAGGAG+TGG 0.669932 8_4:+15837153 Msa1316090:CDS
TGTAGCTGAATGAGACCACA+AGG 0.671420 8_4:-15837878 None:intergenic
GGTCCATGGAGCAAAACTGG+TGG 0.674393 8_4:+15835189 Msa1316090:CDS
AATAGCAAAGACTGTCACAA+AGG 0.677740 8_4:+15838391 Msa1316090:CDS
ATCCACAACATTGCATACCA+AGG 0.683894 8_4:+15836862 Msa1316090:CDS
ATGGACTAACAGTTAAAACC+CGG 0.694472 8_4:-15837111 None:intergenic
GGGACCTGCTAAGAAGTGGG+AGG 0.697968 8_4:+15838887 Msa1316090:intron
TTATAATTACTCCATCACTG+GGG 0.837604 8_4:-15839069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTGTATTTTTTTTTAAA+CGG + chr8_4:15839179-15839198 Msa1316090:three_prime_UTR 10.0%
!! TTGGTAAAAAATAAAGTTTA+AGG - chr8_4:15834407-15834426 None:intergenic 15.0%
!!! TAAAATAAAACTTGCTTAAA+TGG - chr8_4:15834503-15834522 None:intergenic 15.0%
!!! TTATTTTTCAGTATAAAAGA+TGG + chr8_4:15834873-15834892 Msa1316090:intron 15.0%
!! TTTAAGAAACAATAAGATAA+TGG - chr8_4:15838326-15838345 None:intergenic 15.0%
!!! TATTTTTTACCAAAGTTTAG+TGG + chr8_4:15834414-15834433 Msa1316090:intron 20.0%
!! TTAATCTAACAATTGACATT+TGG - chr8_4:15834643-15834662 None:intergenic 20.0%
!! TTAATGATGATTGAATTTGA+AGG + chr8_4:15836031-15836050 Msa1316090:intron 20.0%
!! AAAACTGGAACAAAAATTTA+TGG + chr8_4:15836062-15836081 Msa1316090:CDS 20.0%
!! AAAATGACAAAGGAAAAATT+AGG - chr8_4:15836428-15836447 None:intergenic 20.0%
!! ATAGTCATAAATGAAATTCT+TGG + chr8_4:15836546-15836565 Msa1316090:intron 20.0%
!! TACAAAAAACAACCTAATAA+TGG - chr8_4:15836843-15836862 None:intergenic 20.0%
!! CATCATTATTATACTTACTA+GGG - chr8_4:15837620-15837639 None:intergenic 20.0%
!! TATTATTACTTCAACATTGA+AGG - chr8_4:15838241-15838260 None:intergenic 20.0%
!!! TGAATTTTGTTTTGGAATTA+GGG + chr8_4:15838867-15838886 Msa1316090:intron 20.0%
!! AACAATAATCTATCATTCTT+AGG - chr8_4:15839157-15839176 None:intergenic 20.0%
! TAGTGATGTTCATTCATAAA+GGG - chr8_4:15834236-15834255 None:intergenic 25.0%
! TTAGTGATGTTCATTCATAA+AGG - chr8_4:15834237-15834256 None:intergenic 25.0%
!! TGAAATATTATTGTGTTGCT+TGG - chr8_4:15834272-15834291 None:intergenic 25.0%
! AAGCAACACAATAATATTTC+AGG + chr8_4:15834271-15834290 Msa1316090:five_prime_UTR 25.0%
!! TAAGGCATCAAATTTGAAAT+TGG - chr8_4:15834389-15834408 None:intergenic 25.0%
! TAATTAACACCACTAAACTT+TGG - chr8_4:15834426-15834445 None:intergenic 25.0%
!!! TAAAGTCAAATGTTTGTTGT+TGG - chr8_4:15834667-15834686 None:intergenic 25.0%
! AATTTGAGCTATAGAGAATT+TGG + chr8_4:15834762-15834781 Msa1316090:intron 25.0%
! TAGAACTCCAATTAAAATGA+AGG + chr8_4:15835068-15835087 Msa1316090:CDS 25.0%
! CCACAAATTATAATACCTTT+CGG - chr8_4:15835138-15835157 None:intergenic 25.0%
! TCTACGTTGTAAATTATGAT+TGG + chr8_4:15835383-15835402 Msa1316090:intron 25.0%
!! ACAATGAAAACATTTTGTCA+AGG - chr8_4:15835771-15835790 None:intergenic 25.0%
! TATTGCAATCTGTTTATTAC+AGG + chr8_4:15835852-15835871 Msa1316090:intron 25.0%
! TGTTTATTACAGGTAAAAGT+AGG + chr8_4:15835862-15835881 Msa1316090:intron 25.0%
!!! TTCTTTCATTGCTTTAAAAG+AGG + chr8_4:15835907-15835926 Msa1316090:CDS 25.0%
!!! TCACCTTTTCAAGAAATATA+GGG - chr8_4:15835957-15835976 None:intergenic 25.0%
! ATGATTGAATTTGAAGGTTT+GGG + chr8_4:15836037-15836056 Msa1316090:intron 25.0%
! TAAACAACATTGTAACCAAA+GGG - chr8_4:15836161-15836180 None:intergenic 25.0%
!! GTAGCTTTTTATATTGTCTA+AGG + chr8_4:15836197-15836216 Msa1316090:intron 25.0%
! ATGAAATTCTTGGAAACAAA+TGG + chr8_4:15836556-15836575 Msa1316090:intron 25.0%
! TTATGTTGTTCTAATCTTGT+AGG + chr8_4:15837026-15837045 Msa1316090:intron 25.0%
! AACATCCTCCTTAATAAATT+GGG - chr8_4:15837587-15837606 None:intergenic 25.0%
! CCATCATTATTATACTTACT+AGG - chr8_4:15837621-15837640 None:intergenic 25.0%
! CCTAGTAAGTATAATAATGA+TGG + chr8_4:15837618-15837637 Msa1316090:intron 25.0%
! ATCCTTTCTTACTTCATTAA+AGG + chr8_4:15837665-15837684 Msa1316090:intron 25.0%
! TTCCTTTAATGAAGTAAGAA+AGG - chr8_4:15837670-15837689 None:intergenic 25.0%
!! AATATGTTATGCCATTTCTT+AGG + chr8_4:15837706-15837725 Msa1316090:intron 25.0%
!! ATATGTTATGCCATTTCTTA+GGG + chr8_4:15837707-15837726 Msa1316090:intron 25.0%
! AAATTATTGAGGAAGTCTTA+TGG - chr8_4:15838120-15838139 None:intergenic 25.0%
! AAATGTGAGACAAATTATTG+AGG - chr8_4:15838131-15838150 None:intergenic 25.0%
!!! TCACATTTTTTACTTCAACT+AGG + chr8_4:15838143-15838162 Msa1316090:intron 25.0%
!! TTTAGTGCATTTTAGATTGA+CGG + chr8_4:15838505-15838524 Msa1316090:intron 25.0%
!!! TGTATCCTAATTTTTTTCGT+AGG - chr8_4:15838708-15838727 None:intergenic 25.0%
!!! TGAGTAACTGAATTTTGTTT+TGG + chr8_4:15838859-15838878 Msa1316090:intron 25.0%
!!! CTGAATTTTGTTTTGGAATT+AGG + chr8_4:15838866-15838885 Msa1316090:intron 25.0%
! TTACATCTTTGTTCTAATCA+TGG - chr8_4:15839002-15839021 None:intergenic 25.0%
! ATGATTAGAACAAAGATGTA+AGG + chr8_4:15839001-15839020 Msa1316090:intron 25.0%
! TGATTAGAACAAAGATGTAA+GGG + chr8_4:15839002-15839021 Msa1316090:intron 25.0%
!! ATTATAAGTGCATTTTTCCA+AGG + chr8_4:15839085-15839104 Msa1316090:three_prime_UTR 25.0%
!!! ATTGTCAATTTTTTATGCTG+AGG + chr8_4:15839213-15839232 Msa1316090:three_prime_UTR 25.0%
!!! TTGTCAATTTTTTATGCTGA+GGG + chr8_4:15839214-15839233 Msa1316090:three_prime_UTR 25.0%
GTTGAACTAATTAAGCTTCA+AGG - chr8_4:15834316-15834335 None:intergenic 30.0%
CTATAATATACTAGCTAACC+AGG - chr8_4:15834364-15834383 None:intergenic 30.0%
GTACAAATTAGGATTCTCTA+TGG + chr8_4:15834584-15834603 Msa1316090:intron 30.0%
ATAATTTCACAAGTGATGAG+AGG + chr8_4:15834811-15834830 Msa1316090:intron 30.0%
TGAAACTTCAAATCTAAGTC+TGG + chr8_4:15834835-15834854 Msa1316090:intron 30.0%
AGAAAAGCCAATACACATAA+TGG + chr8_4:15835009-15835028 Msa1316090:CDS 30.0%
! ACTCAGAATTTTGAACTCAT+TGG + chr8_4:15835032-15835051 Msa1316090:CDS 30.0%
!! TTCACTGCCTTCATTTTAAT+TGG - chr8_4:15835078-15835097 None:intergenic 30.0%
!! CCGAAAGGTATTATAATTTG+TGG + chr8_4:15835135-15835154 Msa1316090:CDS 30.0%
TCCAACACATTAGTTACAAT+CGG - chr8_4:15835550-15835569 None:intergenic 30.0%
TCTCTAATTTATCACTCTCT+AGG + chr8_4:15835654-15835673 Msa1316090:intron 30.0%
TAACTATAGCATAGCACAAT+TGG - chr8_4:15835823-15835842 None:intergenic 30.0%
TCACCCTATATTTCTTGAAA+AGG + chr8_4:15835951-15835970 Msa1316090:CDS 30.0%
!! CTCACCTTTTCAAGAAATAT+AGG - chr8_4:15835958-15835977 None:intergenic 30.0%
GATGATTGAATTTGAAGGTT+TGG + chr8_4:15836036-15836055 Msa1316090:intron 30.0%
TGATTGAATTTGAAGGTTTG+GGG + chr8_4:15836038-15836057 Msa1316090:intron 30.0%
TAAAACGTAGTTGATTGTCT+TGG - chr8_4:15836109-15836128 None:intergenic 30.0%
! GTTTTATAACCATATCCCTT+TGG + chr8_4:15836143-15836162 Msa1316090:intron 30.0%
GTAAACAACATTGTAACCAA+AGG - chr8_4:15836162-15836181 None:intergenic 30.0%
AGACTGTGATTTACTGTTAA+AGG - chr8_4:15836309-15836328 None:intergenic 30.0%
CCTGTTAAGATTATTTCCAA+GGG - chr8_4:15836454-15836473 None:intergenic 30.0%
ACGAGCAATAAATATTTCTC+AGG + chr8_4:15836506-15836525 Msa1316090:CDS 30.0%
AAATATTTCTCAGGACCATA+TGG + chr8_4:15836515-15836534 Msa1316090:CDS 30.0%
TGACTATAGTTCATACCATA+TGG - chr8_4:15836533-15836552 None:intergenic 30.0%
!!! ATGTTTTGATTTTCGTATGC+AGG + chr8_4:15836599-15836618 Msa1316090:intron 30.0%
! TTTCAAGTAGCATGAGATAA+GGG - chr8_4:15836663-15836682 None:intergenic 30.0%
! ATTTCAAGTAGCATGAGATA+AGG - chr8_4:15836664-15836683 None:intergenic 30.0%
ATATTTAGGAATGCCAAAGT+AGG + chr8_4:15836704-15836723 Msa1316090:intron 30.0%
AGTTCTTCAAACTTTCTTTC+TGG + chr8_4:15836811-15836830 Msa1316090:intron 30.0%
! AATGAGCTTTTAAATTGGTC+GGG - chr8_4:15836925-15836944 None:intergenic 30.0%
! GAATGAGCTTTTAAATTGGT+CGG - chr8_4:15836926-15836945 None:intergenic 30.0%
! AGTCGAATGAGCTTTTAAAT+TGG - chr8_4:15836930-15836949 None:intergenic 30.0%
! TTGATTTTTCTTCCAACAAC+TGG - chr8_4:15837061-15837080 None:intergenic 30.0%
TTGTTGGAAGAAAAATCAAC+TGG + chr8_4:15837062-15837081 Msa1316090:CDS 30.0%
!! AGAGGAATATTTTTGTCAAC+CGG - chr8_4:15837502-15837521 None:intergenic 30.0%
ACATCCTCCTTAATAAATTG+GGG - chr8_4:15837586-15837605 None:intergenic 30.0%
GAACATCCTCCTTAATAAAT+TGG - chr8_4:15837588-15837607 None:intergenic 30.0%
TGAAATATCATATCCTGACA+AGG + chr8_4:15837769-15837788 Msa1316090:CDS 30.0%
! ATTAAATGAAGGTTGCTGTT+AGG - chr8_4:15838264-15838283 None:intergenic 30.0%
GACACAATTGCATTAAATGA+AGG - chr8_4:15838275-15838294 None:intergenic 30.0%
TTAATGCAATTGTGTCCATA+CGG + chr8_4:15838279-15838298 Msa1316090:intron 30.0%
TTACTACTTAATCTACCGTA+TGG - chr8_4:15838297-15838316 None:intergenic 30.0%
TTGATCATTTCTGCAAAAGT+TGG - chr8_4:15838437-15838456 None:intergenic 30.0%
AGAAATGATCAAGAATTGCA+TGG + chr8_4:15838445-15838464 Msa1316090:CDS 30.0%
! TTTTAGCAAAAGTTACAGTC+TGG - chr8_4:15838575-15838594 None:intergenic 30.0%
AAAACTACTAAGTGCATGTT+TGG - chr8_4:15838617-15838636 None:intergenic 30.0%
GATAGCCTACGAAAAAAATT+AGG + chr8_4:15838700-15838719 Msa1316090:intron 30.0%
CTATTTGGATAAACTTGTCA+TGG - chr8_4:15838817-15838836 None:intergenic 30.0%
CATGACAAGTTTATCCAAAT+AGG + chr8_4:15838815-15838834 Msa1316090:intron 30.0%
! GGATAAATTTAGAGCCTATT+TGG - chr8_4:15838832-15838851 None:intergenic 30.0%
AATTCAGTTACTCAGTTGAT+GGG - chr8_4:15838853-15838872 None:intergenic 30.0%
AAATTCAGTTACTCAGTTGA+TGG - chr8_4:15838854-15838873 None:intergenic 30.0%
TTATAATTACTCCATCACTG+GGG - chr8_4:15839072-15839091 None:intergenic 30.0%
CTTATAATTACTCCATCACT+GGG - chr8_4:15839073-15839092 None:intergenic 30.0%
ACTTATAATTACTCCATCAC+TGG - chr8_4:15839074-15839093 None:intergenic 30.0%
ATACACAGGTTTAAATTCCT+TGG - chr8_4:15839105-15839124 None:intergenic 30.0%
TTAAACCTGTGTATCTAACT+TGG + chr8_4:15839111-15839130 Msa1316090:three_prime_UTR 30.0%
! CTAATTTGTACAACTCGATC+CGG - chr8_4:15834575-15834594 None:intergenic 35.0%
ATTTCCTTGTAGCTTGGATT+TGG - chr8_4:15834745-15834764 None:intergenic 35.0%
GAGCTATAGAGAATTTGGAA+TGG + chr8_4:15834767-15834786 Msa1316090:intron 35.0%
AACTTCAAATCTAAGTCTGG+TGG + chr8_4:15834838-15834857 Msa1316090:intron 35.0%
! AGATAGTTGGTACATTGACA+TGG - chr8_4:15834948-15834967 None:intergenic 35.0%
TTAGACTCACATGAGATAGT+TGG - chr8_4:15834961-15834980 None:intergenic 35.0%
TCTGAGTCCATTATGTGTAT+TGG - chr8_4:15835019-15835038 None:intergenic 35.0%
AAATGAAGGCAGTGAAATCA+AGG + chr8_4:15835082-15835101 Msa1316090:CDS 35.0%
AGAAAGAATGTTATGCCGAA+AGG + chr8_4:15835120-15835139 Msa1316090:CDS 35.0%
GGCATGAATTTGATCTTTGT+TGG + chr8_4:15835156-15835175 Msa1316090:CDS 35.0%
TTTGATCTTTGTTGGAACTG+AGG + chr8_4:15835164-15835183 Msa1316090:CDS 35.0%
AGTAAGCTTACTGCTAATAC+TGG - chr8_4:15835243-15835262 None:intergenic 35.0%
TAGCAGTAAGCTTACTGTTA+TGG + chr8_4:15835247-15835266 Msa1316090:intron 35.0%
CCAACACATTAGTTACAATC+GGG - chr8_4:15835549-15835568 None:intergenic 35.0%
TCTGTAGTGGTTGACATATT+TGG + chr8_4:15835605-15835624 Msa1316090:intron 35.0%
TTTATCACTCTCTAGGCTAA+TGG + chr8_4:15835661-15835680 Msa1316090:intron 35.0%
! TCTTTGTATTGGTCATAACG+TGG - chr8_4:15835709-15835728 None:intergenic 35.0%
GGATACAAGTGTAACAATTG+AGG + chr8_4:15835735-15835754 Msa1316090:CDS 35.0%
CATTGTAATCTTCATTGCAC+AGG + chr8_4:15835785-15835804 Msa1316090:intron 35.0%
AAAAATTTATGGACCTGCCA+CGG + chr8_4:15836073-15836092 Msa1316090:CDS 35.0%
GTTATAAAACCTGACAGAAG+AGG - chr8_4:15836133-15836152 None:intergenic 35.0%
ACATTGTAACCAAAGGGATA+TGG - chr8_4:15836155-15836174 None:intergenic 35.0%
CCAAGGGAAAAAAATGACAA+AGG - chr8_4:15836438-15836457 None:intergenic 35.0%
!!! CCTTTGTCATTTTTTTCCCT+TGG + chr8_4:15836435-15836454 Msa1316090:intron 35.0%
CCCTTGGAAATAATCTTAAC+AGG + chr8_4:15836451-15836470 Msa1316090:intron 35.0%
GCCTGTTAAGATTATTTCCA+AGG - chr8_4:15836455-15836474 None:intergenic 35.0%
ATAATCTTAACAGGCAGCTT+TGG + chr8_4:15836460-15836479 Msa1316090:intron 35.0%
! TCATTTTCGTCGCTAATGAT+TGG + chr8_4:15836630-15836649 Msa1316090:CDS 35.0%
AAATCTATGTACCAGCCAAA+TGG + chr8_4:15836680-15836699 Msa1316090:CDS 35.0%
GCATTCCTAAATATGCCATT+TGG - chr8_4:15836698-15836717 None:intergenic 35.0%
AATGCCAAAGTAGGTCTAAA+TGG + chr8_4:15836713-15836732 Msa1316090:intron 35.0%
! TTCTGGTTGCTACCATTATT+AGG + chr8_4:15836828-15836847 Msa1316090:intron 35.0%
AGGTATGTTAAACCAGTTGT+TGG + chr8_4:15837046-15837065 Msa1316090:intron 35.0%
AAAATCAACTGGATGAAAGC+TGG + chr8_4:15837073-15837092 Msa1316090:CDS 35.0%
!!! CTGGAATTTTAGAATCTCAC+CGG + chr8_4:15837092-15837111 Msa1316090:CDS 35.0%
!!! TGGAATTTTAGAATCTCACC+GGG + chr8_4:15837093-15837112 Msa1316090:CDS 35.0%
! ATGGACTAACAGTTAAAACC+CGG - chr8_4:15837114-15837133 None:intergenic 35.0%
! ACTAGTTCTTGAGCATAGTA+TGG - chr8_4:15837133-15837152 None:intergenic 35.0%
!! GGTGTTACTGGTATTGTAAA+TGG + chr8_4:15837202-15837221 Msa1316090:CDS 35.0%
TACTGGTATTGTAAATGGCA+TGG + chr8_4:15837207-15837226 Msa1316090:CDS 35.0%
GTTATGTATTTGTCAGTGGA+TGG - chr8_4:15837250-15837269 None:intergenic 35.0%
GACAGTTATGTATTTGTCAG+TGG - chr8_4:15837254-15837273 None:intergenic 35.0%
!! AGTTTCTCTAAAATGTGTCG+TGG + chr8_4:15837318-15837337 Msa1316090:intron 35.0%
ATTCCTCTCATTGCTTTCAT+TGG + chr8_4:15837514-15837533 Msa1316090:CDS 35.0%
AGCCATTCCCCAATTTATTA+AGG + chr8_4:15837576-15837595 Msa1316090:CDS 35.0%
CTCCTTAATAAATTGGGGAA+TGG - chr8_4:15837581-15837600 None:intergenic 35.0%
CATTCCCCAATTTATTAAGG+AGG + chr8_4:15837579-15837598 Msa1316090:CDS 35.0%
! TTTTCCTGTTCCCTAAGAAA+TGG - chr8_4:15837720-15837739 None:intergenic 35.0%
TTCTTAGGGAACAGGAAAAA+AGG + chr8_4:15837721-15837740 Msa1316090:intron 35.0%
GCAATTATCATGTGTGCTAA+GGG - chr8_4:15837821-15837840 None:intergenic 35.0%
TGCAATTATCATGTGTGCTA+AGG - chr8_4:15837822-15837841 None:intergenic 35.0%
TTAGCACACATGATAATTGC+AGG + chr8_4:15837821-15837840 Msa1316090:CDS 35.0%
CACTACATACAATCCAAATC+TGG - chr8_4:15837964-15837983 None:intergenic 35.0%
! GATCGTCTGAAATTGAAAAC+TGG + chr8_4:15838010-15838029 Msa1316090:CDS 35.0%
! AACTGGACTGTCAATTTTGA+TGG + chr8_4:15838027-15838046 Msa1316090:CDS 35.0%
! GAAGTCTTATGGCAGAAAAT+CGG - chr8_4:15838109-15838128 None:intergenic 35.0%
AATAGCAAAGACTGTCACAA+AGG + chr8_4:15838391-15838410 Msa1316090:CDS 35.0%
! TTTTAGATTGACGGTGAGTT+TGG + chr8_4:15838514-15838533 Msa1316090:intron 35.0%
ATTTCTTCTCCATCAATTCC+AGG - chr8_4:15838948-15838967 None:intergenic 35.0%
ACTTTCCAAGTTAGATACAC+AGG - chr8_4:15839119-15839138 None:intergenic 35.0%
!!! AATTTTTTATGCTGAGGGTG+AGG + chr8_4:15839219-15839238 Msa1316090:three_prime_UTR 35.0%
!!! TCATAAAGGGCACTAGCTTT+TGG - chr8_4:15834223-15834242 None:intergenic 40.0%
! CGGATCGAGTTGTACAAATT+AGG + chr8_4:15834573-15834592 Msa1316090:intron 40.0%
TAAAGAGAGCTGCAAGAACA+TGG + chr8_4:15834688-15834707 Msa1316090:intron 40.0%
GCAAGAACATGGATCCTTTA+CGG + chr8_4:15834699-15834718 Msa1316090:intron 40.0%
GCTCAAATTTCCTTGTAGCT+TGG - chr8_4:15834751-15834770 None:intergenic 40.0%
CTCATAGAACCAAGTCTCAT+CGG - chr8_4:15834991-15835010 None:intergenic 40.0%
GCAGTGAAATCAAGGAGAAA+AGG + chr8_4:15835090-15835109 Msa1316090:CDS 40.0%
ATCTTTGTTGGAACTGAGGT+TGG + chr8_4:15835168-15835187 Msa1316090:CDS 40.0%
AAGCTTACTGCTAATACTGG+TGG - chr8_4:15835240-15835259 None:intergenic 40.0%
CTGAATAATGTGAGTCTCAG+CGG - chr8_4:15835506-15835525 None:intergenic 40.0%
TGAGACTCACATTATTCAGC+AGG + chr8_4:15835507-15835526 Msa1316090:intron 40.0%
CCCGATTGTAACTAATGTGT+TGG + chr8_4:15835546-15835565 Msa1316090:intron 40.0%
CTGATAGCATTTCTCTGTAG+TGG + chr8_4:15835592-15835611 Msa1316090:intron 40.0%
ATGACCAATACAAAGATGCG+TGG + chr8_4:15835713-15835732 Msa1316090:CDS 40.0%
TGACCAATACAAAGATGCGT+GGG + chr8_4:15835714-15835733 Msa1316090:CDS 40.0%
TATCCCACGCATCTTTGTAT+TGG - chr8_4:15835720-15835739 None:intergenic 40.0%
TTGAAGGTTTGGGGAAAAAC+TGG + chr8_4:15836047-15836066 Msa1316090:intron 40.0%
AAAATTTATGGACCTGCCAC+GGG + chr8_4:15836074-15836093 Msa1316090:CDS 40.0%
AGCTGACAGAGAGAAATTTG+TGG + chr8_4:15836223-15836242 Msa1316090:intron 40.0%
ACCAGCCAAATGGCATATTT+AGG + chr8_4:15836690-15836709 Msa1316090:CDS 40.0%
! TCCTAAATATGCCATTTGGC+TGG - chr8_4:15836694-15836713 None:intergenic 40.0%
! GTTGCCATTTAGACCTACTT+TGG - chr8_4:15836720-15836739 None:intergenic 40.0%
ATCCACAACATTGCATACCA+AGG + chr8_4:15836862-15836881 Msa1316090:CDS 40.0%
AGCTCATTCGACTTCATAGA+TGG + chr8_4:15836937-15836956 Msa1316090:CDS 40.0%
GCTCATTCGACTTCATAGAT+GGG + chr8_4:15836938-15836957 Msa1316090:CDS 40.0%
TATGCTCAAGAACTAGTGTC+AGG + chr8_4:15837136-15837155 Msa1316090:CDS 40.0%
CCAATTCCACTCCTTTATCT+GGG - chr8_4:15837162-15837181 None:intergenic 40.0%
TCCAATTCCACTCCTTTATC+TGG - chr8_4:15837163-15837182 None:intergenic 40.0%
CAATACCAGTAACACCAGTT+CGG - chr8_4:15837198-15837217 None:intergenic 40.0%
TTTAACTAGCTCGTCTACTC+AGG + chr8_4:15837423-15837442 Msa1316090:intron 40.0%
! TTGGAGTGCTTCTTTCAGAA+GGG - chr8_4:15837464-15837483 None:intergenic 40.0%
CTACCAATGAAAGCAATGAG+AGG - chr8_4:15837520-15837539 None:intergenic 40.0%
GGTAGACTTGAAGAGCAAAA+AGG + chr8_4:15837535-15837554 Msa1316090:CDS 40.0%
! TATGCCATTTCTTAGGGAAC+AGG + chr8_4:15837713-15837732 Msa1316090:intron 40.0%
GGGAACAGGAAAAAAGGAAA+TGG + chr8_4:15837727-15837746 Msa1316090:intron 40.0%
AGGAAAGGATTGTGTGAAGT+AGG - chr8_4:15837931-15837950 None:intergenic 40.0%
TTCACACAATCCTTTCCTAG+TGG + chr8_4:15837933-15837952 Msa1316090:intron 40.0%
TCTGGAAAAACCACTAGGAA+AGG - chr8_4:15837946-15837965 None:intergenic 40.0%
CCAAATCTGGAAAAACCACT+AGG - chr8_4:15837951-15837970 None:intergenic 40.0%
! CCTAGTGGTTTTTCCAGATT+TGG + chr8_4:15837948-15837967 Msa1316090:intron 40.0%
CAATTTCAGACGATCCAGAT+TGG - chr8_4:15838005-15838024 None:intergenic 40.0%
! TTAGTGGACACAGTCAAAGA+AGG + chr8_4:15838192-15838211 Msa1316090:CDS 40.0%
ACAGTCAAAGAAGGTTTCAC+TGG + chr8_4:15838201-15838220 Msa1316090:CDS 40.0%
AGGTTTCACTGGATTTCAGA+TGG + chr8_4:15838212-15838231 Msa1316090:CDS 40.0%
GGTTTCACTGGATTTCAGAT+GGG + chr8_4:15838213-15838232 Msa1316090:CDS 40.0%
TTTACTTTAGTGTGACGCTG+TGG + chr8_4:15838349-15838368 Msa1316090:intron 40.0%
TGAGTTTGGCAAAATCAAGG+TGG + chr8_4:15838528-15838547 Msa1316090:intron 40.0%
CTGGAGCTTCAACAAAATCA+CGG - chr8_4:15838556-15838575 None:intergenic 40.0%
! TGCTAGTCTCAATCTCTTGA+AGG + chr8_4:15839032-15839051 Msa1316090:intron 40.0%
CTCAATCTCTTGAAGGTTCA+TGG + chr8_4:15839039-15839058 Msa1316090:three_prime_UTR 40.0%
AGTTAAGGAGTCGAGTGATA+AGG - chr8_4:15839261-15839280 None:intergenic 40.0%
TCTATCCAATGCACTTCACG+TGG + chr8_4:15834187-15834206 Msa1316090:five_prime_UTR 45.0%
! ACCAGGTAAAGAAGCACACA+GGG - chr8_4:15834347-15834366 None:intergenic 45.0%
! AACCAGGTAAAGAAGCACAC+AGG - chr8_4:15834348-15834367 None:intergenic 45.0%
TTGAATATCGCCGTTTGAGC+CGG + chr8_4:15834553-15834572 Msa1316090:intron 45.0%
GCTTGGATTTGGATCCTCTA+TGG - chr8_4:15834734-15834753 None:intergenic 45.0%
GGATCCAAATCCAAGCTACA+AGG + chr8_4:15834738-15834757 Msa1316090:intron 45.0%
!! AAAACAGCACCGATGAGACT+TGG + chr8_4:15834979-15834998 Msa1316090:CDS 45.0%
! AAACCACCAGTTTTGCTCCA+TGG - chr8_4:15835195-15835214 None:intergenic 45.0%
TGGAGCAAAACTGGTGGTTT+AGG + chr8_4:15835195-15835214 Msa1316090:CDS 45.0%
GGTGGTTTAGGAGATGTTCT+AGG + chr8_4:15835207-15835226 Msa1316090:CDS 45.0%
! GGTTTAGGAGATGTTCTAGG+AGG + chr8_4:15835210-15835229 Msa1316090:CDS 45.0%
AATAATGTGAGTCTCAGCGG+CGG - chr8_4:15835503-15835522 None:intergenic 45.0%
!! ACGTTTTAGCCTCTTCTGTC+AGG + chr8_4:15836121-15836140 Msa1316090:CDS 45.0%
TGCCTTGGTATGCAATGTTG+TGG - chr8_4:15836867-15836886 None:intergenic 45.0%
CCCAGATAAAGGAGTGGAAT+TGG + chr8_4:15837159-15837178 Msa1316090:CDS 45.0%
ATGGCATGGATGTTCAAGAG+TGG + chr8_4:15837221-15837240 Msa1316090:CDS 45.0%
CGACGATTCGACAGTAAGAA+TGG + chr8_4:15837279-15837298 Msa1316090:intron 45.0%
TAGCTCGTCTACTCAGGTAT+TGG + chr8_4:15837429-15837448 Msa1316090:intron 45.0%
!! TCGTCTACTCAGGTATTGGA+AGG + chr8_4:15837433-15837452 Msa1316090:intron 45.0%
! CTTGGAGTGCTTCTTTCAGA+AGG - chr8_4:15837465-15837484 None:intergenic 45.0%
TCATATCCTGACAAGGCTAG+AGG + chr8_4:15837776-15837795 Msa1316090:CDS 45.0%
CCACAAGGCTCAAATCTACT+AGG - chr8_4:15837866-15837885 None:intergenic 45.0%
CCTAGTAGATTTGAGCCTTG+TGG + chr8_4:15837863-15837882 Msa1316090:CDS 45.0%
TGTAGCTGAATGAGACCACA+AGG - chr8_4:15837881-15837900 None:intergenic 45.0%
GTACCAATTGTTGCCTCAAC+AGG + chr8_4:15838165-15838184 Msa1316090:CDS 45.0%
TGGAGTTCCATAGACTGCAA+GGG - chr8_4:15838417-15838436 None:intergenic 45.0%
TTGGAGTTCCATAGACTGCA+AGG - chr8_4:15838418-15838437 None:intergenic 45.0%
GCATGGCTCAAGATCTTTCA+TGG + chr8_4:15838462-15838481 Msa1316090:CDS 45.0%
GGCTCAAGATCTTTCATGGA+AGG + chr8_4:15838466-15838485 Msa1316090:CDS 45.0%
CGGTGAGTTTGGCAAAATCA+AGG + chr8_4:15838525-15838544 Msa1316090:intron 45.0%
! GGTAGCTTTACACGACTAGT+AGG - chr8_4:15838648-15838667 None:intergenic 45.0%
ATTAGGGACCTGCTAAGAAG+TGG + chr8_4:15838883-15838902 Msa1316090:intron 45.0%
TTAGGGACCTGCTAAGAAGT+GGG + chr8_4:15838884-15838903 Msa1316090:intron 45.0%
!! GAGGAAGTGCTGCTAAGTTT+GGG + chr8_4:15838906-15838925 Msa1316090:CDS 45.0%
TGGAGAAGAAATTGCTCCAC+AGG + chr8_4:15838956-15838975 Msa1316090:CDS 45.0%
AGAAATTGCTCCACAGGCAA+AGG + chr8_4:15838962-15838981 Msa1316090:CDS 45.0%
! GCTACATTTTCCTTTGCCTG+TGG - chr8_4:15838975-15838994 None:intergenic 45.0%
TAAGGAGTCGAGTGATAAGG+AGG - chr8_4:15839258-15839277 None:intergenic 45.0%
TCCAATGCACTTCACGTGGA+AGG + chr8_4:15834191-15834210 Msa1316090:five_prime_UTR 50.0%
ACCTTCCACGTGAAGTGCAT+TGG - chr8_4:15834195-15834214 None:intergenic 50.0%
TCCCTGTGTGCTTCTTTACC+TGG + chr8_4:15834343-15834362 Msa1316090:five_prime_UTR 50.0%
ACAACTCGATCCGGCTCAAA+CGG - chr8_4:15834566-15834585 None:intergenic 50.0%
TGGATCCTTTACGGACGCAA+CGG + chr8_4:15834708-15834727 Msa1316090:intron 50.0%
! TTGGAACTGAGGTTGGTCCA+TGG + chr8_4:15835175-15835194 Msa1316090:CDS 50.0%
GTTGGTCCATGGAGCAAAAC+TGG + chr8_4:15835186-15835205 Msa1316090:CDS 50.0%
ATAATGTGAGTCTCAGCGGC+GGG - chr8_4:15835502-15835521 None:intergenic 50.0%
TTGGTCATAACGTGGAGCGA+TGG - chr8_4:15835701-15835720 None:intergenic 50.0%
! GTCTTGGTAATCATCTCCCG+TGG - chr8_4:15836093-15836112 None:intergenic 50.0%
CGTCGCTAATGATTGGCACA+CGG + chr8_4:15836637-15836656 Msa1316090:CDS 50.0%
CCAAGGCAGATTTGCATTCG+CGG + chr8_4:15836879-15836898 Msa1316090:CDS 50.0%
CTAGTGTCAGGCCCAGATAA+AGG + chr8_4:15837148-15837167 Msa1316090:CDS 50.0%
GACAACATTCTTCGCCGAAC+TGG + chr8_4:15837181-15837200 Msa1316090:CDS 50.0%
! GAAGCACTCCAAGCAGAAGT+TGG + chr8_4:15837472-15837491 Msa1316090:CDS 50.0%
CCAAGCAGAAGTTGGATTGC+CGG + chr8_4:15837480-15837499 Msa1316090:CDS 50.0%
CAGCTACAAGCTATGCGCTA+CGG + chr8_4:15837893-15837912 Msa1316090:CDS 50.0%
TGCATGCAGTCAGTCCAATC+TGG + chr8_4:15837988-15838007 Msa1316090:intron 50.0%
CCACCTGTTGAGGCAACAAT+TGG - chr8_4:15838171-15838190 None:intergenic 50.0%
CCAATTGTTGCCTCAACAGG+TGG + chr8_4:15838168-15838187 Msa1316090:CDS 50.0%
!! TGCCTCAACAGGTGGATTAG+TGG + chr8_4:15838176-15838195 Msa1316090:CDS 50.0%
GTCCACTAATCCACCTGTTG+AGG - chr8_4:15838181-15838200 None:intergenic 50.0%
TTAGTGTGACGCTGTGGATC+CGG + chr8_4:15838355-15838374 Msa1316090:intron 50.0%
GCTATTGCATCCACATCAGC+CGG - chr8_4:15838377-15838396 None:intergenic 50.0%
ACAAAGGCCCTTGCAGTCTA+TGG + chr8_4:15838407-15838426 Msa1316090:CDS 50.0%
ACTTCCTCCCACTTCTTAGC+AGG - chr8_4:15838894-15838913 None:intergenic 50.0%
!! GGAGGAAGTGCTGCTAAGTT+TGG + chr8_4:15838905-15838924 Msa1316090:CDS 50.0%
CTGCTAAGTTTGGGAGTTCC+TGG + chr8_4:15838915-15838934 Msa1316090:CDS 50.0%
TCAATTCCAGGTTCACTGCC+AGG - chr8_4:15838936-15838955 None:intergenic 50.0%
GGCAGTGAACCTGGAATTGA+TGG + chr8_4:15838936-15838955 Msa1316090:CDS 50.0%
ATGGAACTTCACCCCAGTGA+TGG + chr8_4:15839058-15839077 Msa1316090:three_prime_UTR 50.0%
TATGGCCGTTGCGTCCGTAA+AGG - chr8_4:15834716-15834735 None:intergenic 55.0%
GGTCCATGGAGCAAAACTGG+TGG + chr8_4:15835189-15835208 Msa1316090:CDS 55.0%
TGGTAATCATCTCCCGTGGC+AGG - chr8_4:15836089-15836108 None:intergenic 55.0%
!! AGGCAGCTTTGGAAGCAGCA+AGG + chr8_4:15836471-15836490 Msa1316090:intron 55.0%
!! GGCAGCTTTGGAAGCAGCAA+GGG + chr8_4:15836472-15836491 Msa1316090:intron 55.0%
CCGCGAATGCAAATCTGCCT+TGG - chr8_4:15836882-15836901 None:intergenic 55.0%
GTCAGGCCCAGATAAAGGAG+TGG + chr8_4:15837153-15837172 Msa1316090:CDS 55.0%
!! CTTCGCCGAACTGGTGTTAC+TGG + chr8_4:15837190-15837209 Msa1316090:CDS 55.0%
CCGGCAATCCAACTTCTGCT+TGG - chr8_4:15837483-15837502 None:intergenic 55.0%
!! GCAACTCCTCTAGCCTTGTC+AGG - chr8_4:15837785-15837804 None:intergenic 55.0%
TACGGACGCAACGGCCATAG+AGG + chr8_4:15834717-15834736 Msa1316090:intron 60.0%
GGGACCTGCTAAGAAGTGGG+AGG + chr8_4:15838887-15838906 Msa1316090:intron 60.0%
GGAGTTCCTGGCAGTGAACC+TGG + chr8_4:15838927-15838946 Msa1316090:CDS 60.0%
CGCTGTGGATCCGGCTGATG+TGG + chr8_4:15838364-15838383 Msa1316090:CDS 65.0%
GCTGACTGCGCGCACTCACG+AGG + chr8_4:15838060-15838079 Msa1316090:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 15834173 15839292 15834173 ID=Msa1316090;Name=Msa1316090
chr8_4 mRNA 15834173 15839292 15834173 ID=Msa1316090-mRNA-1;Parent=Msa1316090;Name=Msa1316090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=200|0.86|0.93|0.93|0.86|0.75|16|259|636
chr8_4 exon 15834173 15834364 15834173 ID=Msa1316090-mRNA-1:exon:6054;Parent=Msa1316090-mRNA-1
chr8_4 exon 15834884 15835251 15834884 ID=Msa1316090-mRNA-1:exon:6055;Parent=Msa1316090-mRNA-1
chr8_4 exon 15835676 15835756 15835676 ID=Msa1316090-mRNA-1:exon:6056;Parent=Msa1316090-mRNA-1
chr8_4 exon 15835874 15835972 15835874 ID=Msa1316090-mRNA-1:exon:6057;Parent=Msa1316090-mRNA-1
chr8_4 exon 15836053 15836142 15836053 ID=Msa1316090-mRNA-1:exon:6058;Parent=Msa1316090-mRNA-1
chr8_4 exon 15836473 15836536 15836473 ID=Msa1316090-mRNA-1:exon:6059;Parent=Msa1316090-mRNA-1
chr8_4 exon 15836621 15836721 15836621 ID=Msa1316090-mRNA-1:exon:6060;Parent=Msa1316090-mRNA-1
chr8_4 exon 15836850 15836959 15836850 ID=Msa1316090-mRNA-1:exon:6061;Parent=Msa1316090-mRNA-1
chr8_4 exon 15837048 15837291 15837048 ID=Msa1316090-mRNA-1:exon:6062;Parent=Msa1316090-mRNA-1
chr8_4 exon 15837445 15837621 15837445 ID=Msa1316090-mRNA-1:exon:6063;Parent=Msa1316090-mRNA-1
chr8_4 exon 15837728 15837919 15837728 ID=Msa1316090-mRNA-1:exon:6064;Parent=Msa1316090-mRNA-1
chr8_4 exon 15837997 15838056 15837997 ID=Msa1316090-mRNA-1:exon:6065;Parent=Msa1316090-mRNA-1
chr8_4 exon 15838165 15838251 15838165 ID=Msa1316090-mRNA-1:exon:6066;Parent=Msa1316090-mRNA-1
chr8_4 exon 15838359 15838487 15838359 ID=Msa1316090-mRNA-1:exon:6067;Parent=Msa1316090-mRNA-1
chr8_4 exon 15838888 15839008 15838888 ID=Msa1316090-mRNA-1:exon:6068;Parent=Msa1316090-mRNA-1
chr8_4 exon 15839038 15839292 15839038 ID=Msa1316090-mRNA-1:exon:6069;Parent=Msa1316090-mRNA-1
chr8_4 five_prime_UTR 15834173 15834364 15834173 ID=Msa1316090-mRNA-1:five_prime_utr;Parent=Msa1316090-mRNA-1
chr8_4 five_prime_UTR 15834884 15834891 15834884 ID=Msa1316090-mRNA-1:five_prime_utr;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15834892 15835251 15834892 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15835676 15835756 15835676 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15835874 15835972 15835874 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15836053 15836142 15836053 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15836473 15836536 15836473 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15836621 15836721 15836621 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15836850 15836959 15836850 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15837048 15837291 15837048 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15837445 15837621 15837445 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15837728 15837919 15837728 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15837997 15838056 15837997 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15838165 15838251 15838165 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15838359 15838487 15838359 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 CDS 15838888 15839004 15838888 ID=Msa1316090-mRNA-1:cds;Parent=Msa1316090-mRNA-1
chr8_4 three_prime_UTR 15839005 15839008 15839005 ID=Msa1316090-mRNA-1:three_prime_utr;Parent=Msa1316090-mRNA-1
chr8_4 three_prime_UTR 15839038 15839292 15839038 ID=Msa1316090-mRNA-1:three_prime_utr;Parent=Msa1316090-mRNA-1
Gene Sequence

>Msa1316090

ATGGCAACAGTGACTGCTTCAAGCAACATAGCATCAAGAAATTCTCATATCTACCATGTCAATGTACCAACTATCTCATGTGAGTCTAAAACAGCACCGATGAGACTTGGTTCTATGAGAAAAGCCAATACACATAATGGACTCAGAATTTTGAACTCATTGGATGAGCTACTAAATAGAACTCCAATTAAAATGAAGGCAGTGAAATCAAGGAGAAAAGGTCTTCAGAGAAAGAATGTTATGCCGAAAGGTATTATAATTTGTGGCATGAATTTGATCTTTGTTGGAACTGAGGTTGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTAGGAGGTCTTCCACCAGTATTAGCAGCTAATGGACACAGAGTTATGACCATCGCTCCACGTTATGACCAATACAAAGATGCGTGGGATACAAGTGTAACAATTGAGGTAAAAGTAGGAGATAGAAAAGAAAAAGTTCGCTTCTTTCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGAAAAACTGGAACAAAAATTTATGGACCTGCCACGGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTCTTCTGTCAGGCAGCTTTGGAAGCAGCAAGGGTTCTGAATCTCACGAGCAATAAATATTTCTCAGGACCATATGGTGAAGATGTCATTTTCGTCGCTAATGATTGGCACACGGCCCTTATCTCATGCTACTTGAAATCTATGTACCAGCCAAATGGCATATTTAGGAATGCCAAAGTTGTTTTTTGTATCCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTATTCACTTCTCAATCTTCCCGACCAATTTAAAAGCTCATTCGACTTCATAGATGGGTATGTTAAACCAGTTGTTGGAAGAAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCTCACCGGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTGGAATTGGACAACATTCTTCGCCGAACTGGTGTTACTGGTATTGTAAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAACTGTCAAATACGACGATTCGACAGTATTGGAAGGAAAAGCCCTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGATTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGTAGACTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTATTAAGGAGGATGTTCAGATAGTAGCCCTAGGAACAGGAAAAAAGGAAATGGAAAAGCAACTTCAACAACTTGAAATATCATATCCTGACAAGGCTAGAGGAGTTGCAAAATTCAATGTTCCCTTAGCACACATGATAATTGCAGGAGCTGATTATATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGCTACAAGCTATGCGCTACGGAACTTCAGTCCAATCTGGATCGTCTGAAATTGAAAACTGGACTGTCAATTTTGATGGTTCAGATGTACCAATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGACGCTGTGGATCCGGCTGATGTGGATGCAATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCCAACTTTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTAGCTACTCCATGA

Protein sequence

>Msa1316090

MATVTASSNIASRNSHIYHVNVPTISCESKTAPMRLGSMRKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQRKNVMPKGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDRKEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQPNGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTSVQSGSSEIENWTVNFDGSDVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDAIAKTVTKALAVYGTPTFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP*