AlfalfaGEDB | Msa0343300

M. sativa cultivar zhongmu-4 / Msa0343300

KEGG: K20478
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343300	AES72106.1	92.288	389	30	0	1	389	1	389	0.0	699

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343300	sp\|F4I9A2\|TNO1_ARATH	36.544	353	180	9	50	369	39	380	1.44e-42	163

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343300	G7J2J9	92.288	389	30	0	1	389	1	389	0.0	699

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0343300	0.812813	3.510031e-51	-8.615850e-47
Msa0003220	Msa0343300	0.826188	3.110475e-54	-8.615850e-47
Msa0022750	Msa0343300	-0.819992	8.679849e-53	-8.615850e-47
Msa0027390	Msa0343300	0.832316	1.013546e-55	-8.615850e-47
Msa0039250	Msa0343300	0.802783	4.763029e-49	-8.615850e-47
Msa0054820	Msa0343300	0.826486	2.642359e-54	-8.615850e-47
Msa0056450	Msa0343300	0.806184	9.306788e-50	-8.615850e-47
Msa0070370	Msa0343300	0.802650	5.072161e-49	-8.615850e-47
Msa0089980	Msa0343300	0.804123	2.511865e-49	-8.615850e-47
Msa0090660	Msa0343300	0.811178	7.970402e-51	-8.615850e-47
Msa0091780	Msa0343300	0.811866	5.649805e-51	-8.615850e-47
Msa0092440	Msa0343300	0.800553	1.365318e-48	-8.615850e-47
Msa0100160	Msa0343300	0.808593	2.870036e-50	-8.615850e-47
Msa0115090	Msa0343300	0.804708	1.897429e-49	-8.615850e-47
Msa0116790	Msa0343300	0.823730	1.183555e-53	-8.615850e-47
Msa0117910	Msa0343300	0.837087	6.392948e-57	-8.615850e-47
Msa0126230	Msa0343300	0.844221	8.647050e-59	-8.615850e-47
Msa0133720	Msa0343300	0.804687	1.916289e-49	-8.615850e-47
Msa0133820	Msa0343300	0.828358	9.399715e-55	-8.615850e-47
Msa0143850	Msa0343300	0.822987	1.764952e-53	-8.615850e-47
Msa0144360	Msa0343300	0.809287	2.038732e-50	-8.615850e-47
Msa0160670	Msa0343300	0.823121	1.642558e-53	-8.615850e-47
Msa0165300	Msa0343300	0.830826	2.359824e-55	-8.615850e-47
Msa0174360	Msa0343300	0.801799	7.593790e-49	-8.615850e-47
Msa0183420	Msa0343300	0.805817	1.111338e-49	-8.615850e-47
Msa0197810	Msa0343300	0.801150	1.031262e-48	-8.615850e-47
Msa0200560	Msa0343300	0.810065	1.387179e-50	-8.615850e-47
Msa0227230	Msa0343300	0.822361	2.468012e-53	-8.615850e-47
Msa0236770	Msa0343300	0.805340	1.399672e-49	-8.615850e-47
Msa0269520	Msa0343300	0.809108	2.227411e-50	-8.615850e-47
Msa0279390	Msa0343300	0.839643	1.401612e-57	-8.615850e-47
Msa0302890	Msa0343300	0.804223	2.394564e-49	-8.615850e-47
Msa0305330	Msa0343300	0.824109	9.644292e-54	-8.615850e-47
Msa0317740	Msa0343300	0.821578	3.747527e-53	-8.615850e-47
Msa0318880	Msa0343300	0.851975	6.253219e-61	-8.615850e-47
Msa0320800	Msa0343300	0.807569	4.740856e-50	-8.615850e-47
Msa0343300	Msa0346990	0.811405	7.115853e-51	-8.615850e-47
Msa0343300	Msa0358400	0.819828	9.463712e-53	-8.615850e-47
Msa0343300	Msa0363400	0.804764	1.846619e-49	-8.615850e-47
Msa0343300	Msa0363810	0.812347	4.438465e-51	-8.615850e-47
Msa0343300	Msa0365370	0.807328	5.333235e-50	-8.615850e-47
Msa0343300	Msa0379610	0.819942	8.910979e-53	-8.615850e-47
Msa0343300	Msa0382260	0.804541	2.055775e-49	-8.615850e-47
Msa0343300	Msa0387950	0.812054	5.140639e-51	-8.615850e-47
Msa0343300	Msa0388220	0.804025	2.633676e-49	-8.615850e-47
Msa0343300	Msa0392200	0.806225	9.123365e-50	-8.615850e-47
Msa0343300	Msa0398240	0.812310	4.522398e-51	-8.615850e-47
Msa0343300	Msa0411410	0.823268	1.517606e-53	-8.615850e-47
Msa0343300	Msa0422280	0.826629	2.442331e-54	-8.615850e-47
Msa0343300	Msa0423840	0.826860	2.150883e-54	-8.615850e-47
Msa0343300	Msa0432170	0.832896	7.278386e-56	-8.615850e-47
Msa0343300	Msa0468250	0.808466	3.054825e-50	-8.615850e-47
Msa0343300	Msa0468800	0.848855	4.696059e-60	-8.615850e-47
Msa0343300	Msa0470630	0.809481	1.851933e-50	-8.615850e-47
Msa0343300	Msa0480780	0.803821	2.903234e-49	-8.615850e-47
Msa0343300	Msa0483740	0.801908	7.210563e-49	-8.615850e-47
Msa0343300	Msa0510290	0.853411	2.433044e-61	-8.615850e-47
Msa0343300	Msa0512870	0.813864	2.062157e-51	-8.615850e-47
Msa0343300	Msa0518960	0.812640	3.828814e-51	-8.615850e-47
Msa0343300	Msa0549280	0.800873	1.174987e-48	-8.615850e-47
Msa0343300	Msa0576680	0.827176	1.807554e-54	-8.615850e-47
Msa0343300	Msa0606740	0.804008	2.654710e-49	-8.615850e-47
Msa0343300	Msa0661320	0.807000	6.258145e-50	-8.615850e-47
Msa0343300	Msa0663250	0.820556	6.445439e-53	-8.615850e-47
Msa0343300	Msa0679100	0.803920	2.769047e-49	-8.615850e-47
Msa0343300	Msa0687450	0.869780	2.394735e-66	-8.615850e-47
Msa0343300	Msa0689420	0.834415	3.036955e-56	-8.615850e-47
Msa0343300	Msa0689760	0.866510	2.704373e-65	-8.615850e-47
Msa0343300	Msa0702570	0.830493	2.846990e-55	-8.615850e-47
Msa0343300	Msa0716860	0.858908	5.961629e-63	-8.615850e-47
Msa0343300	Msa0749400	0.838389	2.960905e-57	-8.615850e-47
Msa0343300	Msa0751260	0.809990	1.439673e-50	-8.615850e-47
Msa0343300	Msa0756530	0.811436	7.007352e-51	-8.615850e-47
Msa0343300	Msa0757800	0.851644	7.758459e-61	-8.615850e-47
Msa0343300	Msa0780280	0.802098	6.590963e-49	-8.615850e-47
Msa0343300	Msa0800700	0.825503	4.523669e-54	-8.615850e-47
Msa0343300	Msa0821800	0.805835	1.101871e-49	-8.615850e-47
Msa0343300	Msa0828920	0.800253	1.571565e-48	-8.615850e-47
Msa0343300	Msa0861830	0.811278	7.585319e-51	-8.615850e-47
Msa0343300	Msa0868160	0.806282	8.872559e-50	-8.615850e-47
Msa0343300	Msa0873860	0.809211	2.116447e-50	-8.615850e-47
Msa0343300	Msa0945240	0.802810	4.700665e-49	-8.615850e-47
Msa0343300	Msa0969330	0.819544	1.098541e-52	-8.615850e-47
Msa0343300	Msa0989530	0.802138	6.466000e-49	-8.615850e-47
Msa0343300	Msa0996020	0.815352	9.662182e-52	-8.615850e-47
Msa0343300	Msa1004420	0.819027	1.440689e-52	-8.615850e-47
Msa0343300	Msa1010070	0.846728	1.809765e-59	-8.615850e-47
Msa0343300	Msa1020940	0.822886	1.863797e-53	-8.615850e-47
Msa0343300	Msa1051600	0.815828	7.568915e-52	-8.615850e-47
Msa0343300	Msa1067140	0.808754	2.651422e-50	-8.615850e-47
Msa0343300	Msa1072600	0.802332	5.900130e-49	-8.615850e-47
Msa0343300	Msa1095790	0.824678	7.085119e-54	-8.615850e-47
Msa0343300	Msa1098890	0.807198	5.683109e-50	-8.615850e-47
Msa0343300	Msa1130570	0.806223	9.130627e-50	-8.615850e-47
Msa0343300	Msa1152950	0.801067	1.072228e-48	-8.615850e-47
Msa0343300	Msa1201640	0.809883	1.518552e-50	-8.615850e-47
Msa0343300	Msa1211340	0.832112	1.138445e-55	-8.615850e-47
Msa0343300	Msa1224830	0.834447	2.981282e-56	-8.615850e-47
Msa0343300	Msa1241050	0.808120	3.619353e-50	-8.615850e-47
Msa0343300	Msa1259640	0.829846	4.094988e-55	-8.615850e-47
Msa0343300	Msa1282500	0.818597	1.804365e-52	-8.615850e-47
Msa0343300	Msa1299330	0.818667	1.738909e-52	-8.615850e-47
Msa0343300	Msa1329790	0.832010	1.206265e-55	-8.615850e-47
Msa0343300	Msa1338250	0.828555	8.424385e-55	-8.615850e-47
Msa0343300	Msa1338830	0.817119	3.890588e-52	-8.615850e-47
Msa0343300	Msa1364430	0.815694	8.107371e-52	-8.615850e-47
Msa0343300	Msa1393820	0.808449	3.080527e-50	-8.615850e-47
Msa0343300	Msa1420250	0.865559	5.410631e-65	-8.615850e-47
Msa0343300	Msa1426910	0.806571	7.710053e-50	-8.615850e-47
Msa0343300	Msa1440740	0.838490	2.787563e-57	-8.615850e-47
Msa0343300	Msa1446780	0.805150	1.533569e-49	-8.615850e-47
Msa0343300	Msa1463010	0.811459	6.928061e-51	-8.615850e-47
Msa0343300	Msa1464290	0.824519	7.726395e-54	-8.615850e-47
Msa0343300	Msa1466590	0.846931	1.592282e-59	-8.615850e-47
Msa0343300	Msa1467000	0.847504	1.108804e-59	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343300	MtrunA17_Chr3g0123171	92.288	389	30	0	1	389	1	389	0.0	699

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0343300	AT1G24460.2	36.544	353	180	9	50	369	39	380	1.65e-43	162
Msa0343300	AT1G24460.1	36.544	353	180	9	50	369	39	380	1.90e-43	162

Find 82 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATATTCTTGATCAATT+TGG	0.145549	3_1:-1303178	None:intergenic
AGATTCATTCGATTCAATTT+TGG	0.166274	3_1:+1301233	Msa0343300:five_prime_UTR
TCACTTATCGGAGCAGATTT+TGG	0.199242	3_1:+1301375	Msa0343300:CDS
GATACTAATGAGCAGGAATT+TGG	0.210844	3_1:+1302243	Msa0343300:CDS
TTTGTTGTAGTGAAGTATTC+AGG	0.214106	3_1:-1302668	None:intergenic
CATCAACAACAGAGTCATTT+TGG	0.215669	3_1:+1301719	Msa0343300:CDS
CCGAATTTCGTCGTCAAAAC+AGG	0.305119	3_1:+1301112	None:intergenic
CTTTCTGATATTTATCAACT+TGG	0.311795	3_1:+1302195	Msa0343300:CDS
ATTCGATTCAATGCTTATAT+AGG	0.320108	3_1:+1301256	Msa0343300:five_prime_UTR
TGGTGCTCGTGGTGGGTTGC+TGG	0.321090	3_1:+1302278	Msa0343300:CDS
TGATCTAAAAGATGAAGTTT+TGG	0.322323	3_1:+1301559	Msa0343300:CDS
GAAATGCTTAATTGAATTGC+AGG	0.329134	3_1:+1302572	Msa0343300:CDS
AGCCATACTAAGTTTCTCTT+TGG	0.347518	3_1:-1302472	None:intergenic
AGAAGGCGAAAATCAGAAAT+TGG	0.359711	3_1:+1302347	Msa0343300:CDS
TTCATTCGGATCTACAGTTT+CGG	0.372621	3_1:-1301307	None:intergenic
GGGCCTCGGATGAAGCTTGC+AGG	0.376584	3_1:-1302011	None:intergenic
GTCTGAGAATAATCACTTAT+CGG	0.378869	3_1:+1301363	Msa0343300:CDS
GTTGGCCCAGAGTGAAAATA+TGG	0.385392	3_1:+1302638	Msa0343300:CDS
ATCTGAGATGAAGGAAATAA+AGG	0.386056	3_1:-1301214	None:intergenic
GATTCGGATTCTCAATCAAA+TGG	0.390543	3_1:+1301397	Msa0343300:CDS
TACCAAAGAGAAACTTAGTA+TGG	0.390919	3_1:+1302470	Msa0343300:CDS
CTTGCAAGTGTTGTTAATCA+AGG	0.404165	3_1:+1302087	Msa0343300:CDS
AAGTGTTGTGAATGAATATC+AGG	0.406781	3_1:+1301817	Msa0343300:CDS
GAATTTGGAAACATACTTGT+TGG	0.415503	3_1:+1302258	Msa0343300:CDS
ATAAGTATCAATGTTTGATT+CGG	0.415505	3_1:-1301428	None:intergenic
TCGAACGTGATTAGCTCGTC+GGG	0.426509	3_1:-1301632	None:intergenic
CATTGATACTTATCAAAATC+AGG	0.429082	3_1:+1301438	Msa0343300:CDS
TTGTTGTAGTGAAGTATTCA+GGG	0.439329	3_1:-1302667	None:intergenic
GAATTGAATAATGGCGTAGC+GGG	0.442047	3_1:+1301743	Msa0343300:CDS
GTCATTCTCTGAGGTTGGCT+TGG	0.443846	3_1:+1302221	Msa0343300:CDS
GGACAGTCATTCTCTGAGGT+TGG	0.446660	3_1:+1302216	Msa0343300:CDS
CAAATACTCACTCCTTCATT+CGG	0.450203	3_1:-1301321	None:intergenic
GGAACAGTTGCGGGTGAAGT+TGG	0.455421	3_1:+1301772	Msa0343300:CDS
GAAAAGCTGTCTCATGTAGA+AGG	0.456481	3_1:+1302330	Msa0343300:CDS
TGCGCATTAATCACTTTGCT+TGG	0.457559	3_1:+1301135	Msa0343300:five_prime_UTR
ATTCGGATTCTCAATCAAAT+GGG	0.463090	3_1:+1301398	Msa0343300:CDS
ATCCGAGGCCCAACATGAAA+AGG	0.477333	3_1:+1302023	Msa0343300:CDS
CACGTTCGACGGTAAGCAAA+AGG	0.478122	3_1:+1301646	Msa0343300:CDS
CTTAGTATGGCTGTGACAAA+AGG	0.481414	3_1:+1302483	Msa0343300:CDS
TGAAGCTTGCAGGATCTCAT+TGG	0.489946	3_1:-1302001	None:intergenic
TAAGCATTTCTCAAGCTCAC+TGG	0.491182	3_1:-1302559	None:intergenic
TGTTAATCAAGGGCAAGTAT+TGG	0.498633	3_1:+1302098	Msa0343300:CDS
ATATTGACAATGTGATAGAT+AGG	0.501939	3_1:+1302052	Msa0343300:CDS
AGTAGAACTTGAGCAGGAAA+AGG	0.506600	3_1:+1302434	Msa0343300:CDS
GAGACATTGAATACTGAGCT+TGG	0.512525	3_1:+1302402	Msa0343300:CDS
ATCGAATGAATCTGAGATGA+AGG	0.514760	3_1:-1301223	None:intergenic
TATAAAAGTAGAACTTGAGC+AGG	0.517132	3_1:+1302428	Msa0343300:CDS
TAGAAGAGCTTGACAAGGAA+AGG	0.530393	3_1:+1302370	Msa0343300:CDS
TGGCTTGGATACTAATGAGC+AGG	0.538848	3_1:+1302236	Msa0343300:CDS
AGATTCACTAAAGACGTCTC+TGG	0.544951	3_1:+1302527	Msa0343300:CDS
TGAACTTACTAAAGAGGAGT+TGG	0.545888	3_1:+1302620	Msa0343300:CDS
TACTTGTTGGTGCTCGTGGT+GGG	0.546181	3_1:+1302271	Msa0343300:CDS
ATTAACAACACTTGCAAGAG+AGG	0.546774	3_1:-1302082	None:intergenic
AGCCGCTGAACTTACTAAAG+AGG	0.547967	3_1:+1302614	Msa0343300:CDS
GTCGAACGTGATTAGCTCGT+CGG	0.552346	3_1:-1301633	None:intergenic
GTTGCTGGAGCTCAAGAGAA+AGG	0.556424	3_1:+1302293	Msa0343300:CDS
TCACTAAAGACGTCTCTGGC+TGG	0.563652	3_1:+1302531	Msa0343300:CDS
TTGCAAGTGTTGTTAATCAA+GGG	0.565522	3_1:+1302088	Msa0343300:CDS
AGAAGAGCTTGACAAGGAAA+GGG	0.568440	3_1:+1302371	Msa0343300:CDS
AACATACTTGTTGGTGCTCG+TGG	0.576164	3_1:+1302267	Msa0343300:CDS
GATAGAGAATCTAAATGCAA+AGG	0.590859	3_1:+1301960	Msa0343300:CDS
TGTGACAAAAGGAAAGGCAT+TGG	0.591898	3_1:+1302494	Msa0343300:CDS
AGCTGCTGATGAAAATGAAG+AGG	0.592739	3_1:+1301682	Msa0343300:CDS
GAAACTGTAGATCCGAATGA+AGG	0.594883	3_1:+1301309	Msa0343300:five_prime_UTR
CTCCTCTTTAGTAAGTTCAG+CGG	0.595348	3_1:-1302616	None:intergenic
ATACTTGTTGGTGCTCGTGG+TGG	0.612698	3_1:+1302270	Msa0343300:CDS
TATGGCTGTGACAAAAGGAA+AGG	0.617967	3_1:+1302488	Msa0343300:CDS
TGGGAAAATAGTATATATCG+AGG	0.620582	3_1:+1302134	Msa0343300:CDS
AATTGAATAATGGCGTAGCG+GGG	0.634857	3_1:+1301744	Msa0343300:CDS
GAGGCCCAACATGAAAAGGA+TGG	0.642746	3_1:+1302027	Msa0343300:CDS
TTCGGATTCTCAATCAAATG+GGG	0.643731	3_1:+1301399	Msa0343300:CDS
GTATTGGACGAGTCTAGAAG+TGG	0.644582	3_1:+1302114	Msa0343300:CDS
GACGAGCTAATCACGTTCGA+CGG	0.648618	3_1:+1301635	Msa0343300:CDS
ATTGAATAATGGCGTAGCGG+GGG	0.652154	3_1:+1301745	Msa0343300:CDS
TATTGGACGAGTCTAGAAGT+GGG	0.652677	3_1:+1302115	Msa0343300:CDS
TGAAGATGTTAAATCTACAG+AGG	0.663925	3_1:+1301589	Msa0343300:CDS
ACTTGGACAGTCATTCTCTG+AGG	0.677988	3_1:+1302212	Msa0343300:CDS
AGAGCTTGACAAGGAAAGGG+CGG	0.695541	3_1:+1302374	Msa0343300:CDS
TGAATTGAATAATGGCGTAG+CGG	0.698333	3_1:+1301742	Msa0343300:CDS
GATCCTGCAAGCTTCATCCG+AGG	0.704365	3_1:+1302008	Msa0343300:CDS
ATTGGTAGAAGAGCTTGACA+AGG	0.714538	3_1:+1302365	Msa0343300:CDS
CGAACGTGATTAGCTCGTCG+GGG	0.724081	3_1:-1301631	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTATAAATCTATTCTAAAT+TGG	+	chr3_1:1303096-1303115	Msa0343300:intron	10.0%
!!!	CTATCATATTAATATTTTTT+TGG	-	chr3_1:1303134-1303153	None:intergenic	10.0%
!!	CAAAAAAATATTAATATGAT+AGG	+	chr3_1:1303132-1303151	Msa0343300:intron	10.0%
!!	TTTATAAATCTATTCTAAAT+TGG	+	chr3_1:1303096-1303115	Msa0343300:intron	10.0%
!!!	CTATCATATTAATATTTTTT+TGG	-	chr3_1:1303134-1303153	None:intergenic	10.0%
!!	CAAAAAAATATTAATATGAT+AGG	+	chr3_1:1303132-1303151	Msa0343300:intron	10.0%
!!!	ATTAACAAAATTTTCTTTCT+CGG	-	chr3_1:1301891-1301910	None:intergenic	15.0%
!!!	ATTAACAAAATTTTCTTTCT+CGG	-	chr3_1:1301891-1301910	None:intergenic	15.0%
!!!	TCTAAGTCAAATTACATTTT+AGG	+	chr3_1:1301187-1301206	Msa0343300:five_prime_UTR	20.0%
!!!	CTAAGTCAAATTACATTTTA+GGG	+	chr3_1:1301188-1301207	Msa0343300:five_prime_UTR	20.0%
!!	ATAAGTATCAATGTTTGATT+CGG	-	chr3_1:1301431-1301450	None:intergenic	20.0%
!!	TCAATCACATATAGATTATT+TGG	-	chr3_1:1301472-1301491	None:intergenic	20.0%
!!	AATCTATATGTGATTGAAAT+TGG	+	chr3_1:1301475-1301494	Msa0343300:intron	20.0%
!!!	TATTTAATTTGGTGATATTC+AGG	+	chr3_1:1301912-1301931	Msa0343300:intron	20.0%
!!	TTTGTGATCTTTCATTAAAA+AGG	+	chr3_1:1302942-1302961	Msa0343300:intron	20.0%
!!	TACATATGATACATGAAAAT+AGG	+	chr3_1:1303048-1303067	Msa0343300:intron	20.0%
!!!	TCTAAGTCAAATTACATTTT+AGG	+	chr3_1:1301187-1301206	Msa0343300:five_prime_UTR	20.0%
!!!	CTAAGTCAAATTACATTTTA+GGG	+	chr3_1:1301188-1301207	Msa0343300:five_prime_UTR	20.0%
!!	ATAAGTATCAATGTTTGATT+CGG	-	chr3_1:1301431-1301450	None:intergenic	20.0%
!!	TCAATCACATATAGATTATT+TGG	-	chr3_1:1301472-1301491	None:intergenic	20.0%
!!	AATCTATATGTGATTGAAAT+TGG	+	chr3_1:1301475-1301494	Msa0343300:intron	20.0%
!!!	TATTTAATTTGGTGATATTC+AGG	+	chr3_1:1301912-1301931	Msa0343300:intron	20.0%
!!	TTTGTGATCTTTCATTAAAA+AGG	+	chr3_1:1302942-1302961	Msa0343300:intron	20.0%
!!	TACATATGATACATGAAAAT+AGG	+	chr3_1:1303048-1303067	Msa0343300:intron	20.0%
!!	AGATTCATTCGATTCAATTT+TGG	+	chr3_1:1301233-1301252	Msa0343300:five_prime_UTR	25.0%
!	ATTCGATTCAATGCTTATAT+AGG	+	chr3_1:1301256-1301275	Msa0343300:five_prime_UTR	25.0%
!!	AGTGAGTATTTGAATTTTGA+CGG	+	chr3_1:1301332-1301351	Msa0343300:five_prime_UTR	25.0%
!	CATTGATACTTATCAAAATC+AGG	+	chr3_1:1301438-1301457	Msa0343300:CDS	25.0%
!	TTTAATCAATTAATGGGACT+TGG	+	chr3_1:1301517-1301536	Msa0343300:intron	25.0%
!!	TGATCTAAAAGATGAAGTTT+TGG	+	chr3_1:1301559-1301578	Msa0343300:CDS	25.0%
!!	GATCTAAAAGATGAAGTTTT+GGG	+	chr3_1:1301560-1301579	Msa0343300:CDS	25.0%
!!!	CATTTTGGTGAATTGAATAA+TGG	+	chr3_1:1301734-1301753	Msa0343300:CDS	25.0%
!	ATATTGACAATGTGATAGAT+AGG	+	chr3_1:1302052-1302071	Msa0343300:CDS	25.0%
!	CTTTCTGATATTTATCAACT+TGG	+	chr3_1:1302195-1302214	Msa0343300:CDS	25.0%
!	NNNNNNNAGGAGAAGAAACT+AGG	+	chr3_1:1302845-1302864	Msa0343300:intron	25.0%
!	NNNNNNAGGAGAAGAAACTA+GGG	+	chr3_1:1302846-1302865	Msa0343300:intron	25.0%
!!	AGATTCATTCGATTCAATTT+TGG	+	chr3_1:1301233-1301252	Msa0343300:five_prime_UTR	25.0%
!	ATTCGATTCAATGCTTATAT+AGG	+	chr3_1:1301256-1301275	Msa0343300:five_prime_UTR	25.0%
!!	AGTGAGTATTTGAATTTTGA+CGG	+	chr3_1:1301332-1301351	Msa0343300:five_prime_UTR	25.0%
!	CATTGATACTTATCAAAATC+AGG	+	chr3_1:1301438-1301457	Msa0343300:CDS	25.0%
!	TTTAATCAATTAATGGGACT+TGG	+	chr3_1:1301517-1301536	Msa0343300:intron	25.0%
!!	TGATCTAAAAGATGAAGTTT+TGG	+	chr3_1:1301559-1301578	Msa0343300:CDS	25.0%
!!	GATCTAAAAGATGAAGTTTT+GGG	+	chr3_1:1301560-1301579	Msa0343300:CDS	25.0%
!!!	CATTTTGGTGAATTGAATAA+TGG	+	chr3_1:1301734-1301753	Msa0343300:CDS	25.0%
!	ATATTGACAATGTGATAGAT+AGG	+	chr3_1:1302052-1302071	Msa0343300:CDS	25.0%
!	CTTTCTGATATTTATCAACT+TGG	+	chr3_1:1302195-1302214	Msa0343300:CDS	25.0%
!	NNNNNNNAGGAGAAGAAACT+AGG	+	chr3_1:1302845-1302864	Msa0343300:intron	25.0%
!	NNNNNNAGGAGAAGAAACTA+GGG	+	chr3_1:1302846-1302865	Msa0343300:intron	25.0%
!	ATCTGAGATGAAGGAAATAA+AGG	-	chr3_1:1301217-1301236	None:intergenic	30.0%
	GTCTGAGAATAATCACTTAT+CGG	+	chr3_1:1301363-1301382	Msa0343300:CDS	30.0%
	ATTCGGATTCTCAATCAAAT+GGG	+	chr3_1:1301398-1301417	Msa0343300:CDS	30.0%
	TGAAGATGTTAAATCTACAG+AGG	+	chr3_1:1301589-1301608	Msa0343300:CDS	30.0%
!	AAGTGTTGTGAATGAATATC+AGG	+	chr3_1:1301817-1301836	Msa0343300:CDS	30.0%
	GATAGAGAATCTAAATGCAA+AGG	+	chr3_1:1301960-1301979	Msa0343300:CDS	30.0%
!	TTGCAAGTGTTGTTAATCAA+GGG	+	chr3_1:1302088-1302107	Msa0343300:CDS	30.0%
	TGGGAAAATAGTATATATCG+AGG	+	chr3_1:1302134-1302153	Msa0343300:CDS	30.0%
	GAATTTGGAAACATACTTGT+TGG	+	chr3_1:1302258-1302277	Msa0343300:CDS	30.0%
	TATAAAAGTAGAACTTGAGC+AGG	+	chr3_1:1302428-1302447	Msa0343300:CDS	30.0%
	TACCAAAGAGAAACTTAGTA+TGG	+	chr3_1:1302470-1302489	Msa0343300:CDS	30.0%
	GAAATGCTTAATTGAATTGC+AGG	+	chr3_1:1302572-1302591	Msa0343300:CDS	30.0%
!	TTGTTGTAGTGAAGTATTCA+GGG	-	chr3_1:1302670-1302689	None:intergenic	30.0%
!	TTTGTTGTAGTGAAGTATTC+AGG	-	chr3_1:1302671-1302690	None:intergenic	30.0%
	TTCTTGTACTTGCTCAAAAA+TGG	-	chr3_1:1302700-1302719	None:intergenic	30.0%
	TATTCTAAATTGGTGCATGA+TGG	+	chr3_1:1303106-1303125	Msa0343300:intron	30.0%
!	ATCTGAGATGAAGGAAATAA+AGG	-	chr3_1:1301217-1301236	None:intergenic	30.0%
	GTCTGAGAATAATCACTTAT+CGG	+	chr3_1:1301363-1301382	Msa0343300:CDS	30.0%
	ATTCGGATTCTCAATCAAAT+GGG	+	chr3_1:1301398-1301417	Msa0343300:CDS	30.0%
	TGAAGATGTTAAATCTACAG+AGG	+	chr3_1:1301589-1301608	Msa0343300:CDS	30.0%
!	AAGTGTTGTGAATGAATATC+AGG	+	chr3_1:1301817-1301836	Msa0343300:CDS	30.0%
	GATAGAGAATCTAAATGCAA+AGG	+	chr3_1:1301960-1301979	Msa0343300:CDS	30.0%
!	TTGCAAGTGTTGTTAATCAA+GGG	+	chr3_1:1302088-1302107	Msa0343300:CDS	30.0%
	TGGGAAAATAGTATATATCG+AGG	+	chr3_1:1302134-1302153	Msa0343300:CDS	30.0%
	GAATTTGGAAACATACTTGT+TGG	+	chr3_1:1302258-1302277	Msa0343300:CDS	30.0%
	TATAAAAGTAGAACTTGAGC+AGG	+	chr3_1:1302428-1302447	Msa0343300:CDS	30.0%
	TACCAAAGAGAAACTTAGTA+TGG	+	chr3_1:1302470-1302489	Msa0343300:CDS	30.0%
	GAAATGCTTAATTGAATTGC+AGG	+	chr3_1:1302572-1302591	Msa0343300:CDS	30.0%
!	TTGTTGTAGTGAAGTATTCA+GGG	-	chr3_1:1302670-1302689	None:intergenic	30.0%
!	TTTGTTGTAGTGAAGTATTC+AGG	-	chr3_1:1302671-1302690	None:intergenic	30.0%
	TTCTTGTACTTGCTCAAAAA+TGG	-	chr3_1:1302700-1302719	None:intergenic	30.0%
	TATTCTAAATTGGTGCATGA+TGG	+	chr3_1:1303106-1303125	Msa0343300:intron	30.0%
!	ATCGAATGAATCTGAGATGA+AGG	-	chr3_1:1301226-1301245	None:intergenic	35.0%
	TTCATTCGGATCTACAGTTT+CGG	-	chr3_1:1301310-1301329	None:intergenic	35.0%
	CAAATACTCACTCCTTCATT+CGG	-	chr3_1:1301324-1301343	None:intergenic	35.0%
	GATTCGGATTCTCAATCAAA+TGG	+	chr3_1:1301397-1301416	Msa0343300:CDS	35.0%
	TTCGGATTCTCAATCAAATG+GGG	+	chr3_1:1301399-1301418	Msa0343300:CDS	35.0%
!	CATCAACAACAGAGTCATTT+TGG	+	chr3_1:1301719-1301738	Msa0343300:CDS	35.0%
	TGAATTGAATAATGGCGTAG+CGG	+	chr3_1:1301742-1301761	Msa0343300:CDS	35.0%
!	ATCACCATCCTTTTCATGTT+GGG	-	chr3_1:1302034-1302053	None:intergenic	35.0%
!	TATCACCATCCTTTTCATGT+TGG	-	chr3_1:1302035-1302054	None:intergenic	35.0%
	ATTAACAACACTTGCAAGAG+AGG	-	chr3_1:1302085-1302104	None:intergenic	35.0%
!	CTTGCAAGTGTTGTTAATCA+AGG	+	chr3_1:1302087-1302106	Msa0343300:CDS	35.0%
	TGTTAATCAAGGGCAAGTAT+TGG	+	chr3_1:1302098-1302117	Msa0343300:CDS	35.0%
	GATACTAATGAGCAGGAATT+TGG	+	chr3_1:1302243-1302262	Msa0343300:CDS	35.0%
	AGAAGGCGAAAATCAGAAAT+TGG	+	chr3_1:1302347-1302366	Msa0343300:CDS	35.0%
	AGCCATACTAAGTTTCTCTT+TGG	-	chr3_1:1302475-1302494	None:intergenic	35.0%
	TGAACTTACTAAAGAGGAGT+TGG	+	chr3_1:1302620-1302639	Msa0343300:CDS	35.0%
!	TGCAACCATATTTTCACTCT+GGG	-	chr3_1:1302646-1302665	None:intergenic	35.0%
!	ATGCAACCATATTTTCACTC+TGG	-	chr3_1:1302647-1302666	None:intergenic	35.0%
!	ACATGAAAATAGGTTGACGA+TGG	+	chr3_1:1303058-1303077	Msa0343300:intron	35.0%
!!	GGAATAGCTATAGCTGTTTT+TGG	-	chr3_1:1303160-1303179	None:intergenic	35.0%
!	ATCGAATGAATCTGAGATGA+AGG	-	chr3_1:1301226-1301245	None:intergenic	35.0%
	TTCATTCGGATCTACAGTTT+CGG	-	chr3_1:1301310-1301329	None:intergenic	35.0%
	CAAATACTCACTCCTTCATT+CGG	-	chr3_1:1301324-1301343	None:intergenic	35.0%
	GATTCGGATTCTCAATCAAA+TGG	+	chr3_1:1301397-1301416	Msa0343300:CDS	35.0%
	TTCGGATTCTCAATCAAATG+GGG	+	chr3_1:1301399-1301418	Msa0343300:CDS	35.0%
!	CATCAACAACAGAGTCATTT+TGG	+	chr3_1:1301719-1301738	Msa0343300:CDS	35.0%
	TGAATTGAATAATGGCGTAG+CGG	+	chr3_1:1301742-1301761	Msa0343300:CDS	35.0%
!	ATCACCATCCTTTTCATGTT+GGG	-	chr3_1:1302034-1302053	None:intergenic	35.0%
!	TATCACCATCCTTTTCATGT+TGG	-	chr3_1:1302035-1302054	None:intergenic	35.0%
	ATTAACAACACTTGCAAGAG+AGG	-	chr3_1:1302085-1302104	None:intergenic	35.0%
!	CTTGCAAGTGTTGTTAATCA+AGG	+	chr3_1:1302087-1302106	Msa0343300:CDS	35.0%
	TGTTAATCAAGGGCAAGTAT+TGG	+	chr3_1:1302098-1302117	Msa0343300:CDS	35.0%
	GATACTAATGAGCAGGAATT+TGG	+	chr3_1:1302243-1302262	Msa0343300:CDS	35.0%
	AGAAGGCGAAAATCAGAAAT+TGG	+	chr3_1:1302347-1302366	Msa0343300:CDS	35.0%
	AGCCATACTAAGTTTCTCTT+TGG	-	chr3_1:1302475-1302494	None:intergenic	35.0%
	TGAACTTACTAAAGAGGAGT+TGG	+	chr3_1:1302620-1302639	Msa0343300:CDS	35.0%
!	TGCAACCATATTTTCACTCT+GGG	-	chr3_1:1302646-1302665	None:intergenic	35.0%
!	ATGCAACCATATTTTCACTC+TGG	-	chr3_1:1302647-1302666	None:intergenic	35.0%
!	ACATGAAAATAGGTTGACGA+TGG	+	chr3_1:1303058-1303077	Msa0343300:intron	35.0%
!!	GGAATAGCTATAGCTGTTTT+TGG	-	chr3_1:1303160-1303179	None:intergenic	35.0%
	TGCGCATTAATCACTTTGCT+TGG	+	chr3_1:1301135-1301154	Msa0343300:five_prime_UTR	40.0%
	GAAACTGTAGATCCGAATGA+AGG	+	chr3_1:1301309-1301328	Msa0343300:five_prime_UTR	40.0%
!	TCACTTATCGGAGCAGATTT+TGG	+	chr3_1:1301375-1301394	Msa0343300:CDS	40.0%
!	ATCGGAGCAGATTTTGGATT+CGG	+	chr3_1:1301381-1301400	Msa0343300:CDS	40.0%
	AGCTGCTGATGAAAATGAAG+AGG	+	chr3_1:1301682-1301701	Msa0343300:CDS	40.0%
	GAATTGAATAATGGCGTAGC+GGG	+	chr3_1:1301743-1301762	Msa0343300:CDS	40.0%
	AATTGAATAATGGCGTAGCG+GGG	+	chr3_1:1301744-1301763	Msa0343300:CDS	40.0%
	AATATCAGGTGTGCTAGCAT+AGG	+	chr3_1:1301831-1301850	Msa0343300:intron	40.0%
!	TTCAGGAGCTTTTATCTGTG+AGG	+	chr3_1:1301929-1301948	Msa0343300:intron	40.0%
!	TCAGGAGCTTTTATCTGTGA+GGG	+	chr3_1:1301930-1301949	Msa0343300:intron	40.0%
	TATTGGACGAGTCTAGAAGT+GGG	+	chr3_1:1302115-1302134	Msa0343300:CDS	40.0%
	GAAAAGCTGTCTCATGTAGA+AGG	+	chr3_1:1302330-1302349	Msa0343300:CDS	40.0%
	ATTGGTAGAAGAGCTTGACA+AGG	+	chr3_1:1302365-1302384	Msa0343300:CDS	40.0%
	TAGAAGAGCTTGACAAGGAA+AGG	+	chr3_1:1302370-1302389	Msa0343300:CDS	40.0%
	AGAAGAGCTTGACAAGGAAA+GGG	+	chr3_1:1302371-1302390	Msa0343300:CDS	40.0%
	GAGACATTGAATACTGAGCT+TGG	+	chr3_1:1302402-1302421	Msa0343300:CDS	40.0%
	AGTAGAACTTGAGCAGGAAA+AGG	+	chr3_1:1302434-1302453	Msa0343300:CDS	40.0%
	CTTAGTATGGCTGTGACAAA+AGG	+	chr3_1:1302483-1302502	Msa0343300:CDS	40.0%
	TATGGCTGTGACAAAAGGAA+AGG	+	chr3_1:1302488-1302507	Msa0343300:CDS	40.0%
!	TGTGACAAAAGGAAAGGCAT+TGG	+	chr3_1:1302494-1302513	Msa0343300:CDS	40.0%
	AGATTCACTAAAGACGTCTC+TGG	+	chr3_1:1302527-1302546	Msa0343300:CDS	40.0%
	TAAGCATTTCTCAAGCTCAC+TGG	-	chr3_1:1302562-1302581	None:intergenic	40.0%
	CTCCTCTTTAGTAAGTTCAG+CGG	-	chr3_1:1302619-1302638	None:intergenic	40.0%
	TGCGCATTAATCACTTTGCT+TGG	+	chr3_1:1301135-1301154	Msa0343300:five_prime_UTR	40.0%
	GAAACTGTAGATCCGAATGA+AGG	+	chr3_1:1301309-1301328	Msa0343300:five_prime_UTR	40.0%
!	TCACTTATCGGAGCAGATTT+TGG	+	chr3_1:1301375-1301394	Msa0343300:CDS	40.0%
!	ATCGGAGCAGATTTTGGATT+CGG	+	chr3_1:1301381-1301400	Msa0343300:CDS	40.0%
	AGCTGCTGATGAAAATGAAG+AGG	+	chr3_1:1301682-1301701	Msa0343300:CDS	40.0%
	GAATTGAATAATGGCGTAGC+GGG	+	chr3_1:1301743-1301762	Msa0343300:CDS	40.0%
	AATTGAATAATGGCGTAGCG+GGG	+	chr3_1:1301744-1301763	Msa0343300:CDS	40.0%
	AATATCAGGTGTGCTAGCAT+AGG	+	chr3_1:1301831-1301850	Msa0343300:intron	40.0%
!	TTCAGGAGCTTTTATCTGTG+AGG	+	chr3_1:1301929-1301948	Msa0343300:intron	40.0%
!	TCAGGAGCTTTTATCTGTGA+GGG	+	chr3_1:1301930-1301949	Msa0343300:intron	40.0%
	TATTGGACGAGTCTAGAAGT+GGG	+	chr3_1:1302115-1302134	Msa0343300:CDS	40.0%
	GAAAAGCTGTCTCATGTAGA+AGG	+	chr3_1:1302330-1302349	Msa0343300:CDS	40.0%
	ATTGGTAGAAGAGCTTGACA+AGG	+	chr3_1:1302365-1302384	Msa0343300:CDS	40.0%
	TAGAAGAGCTTGACAAGGAA+AGG	+	chr3_1:1302370-1302389	Msa0343300:CDS	40.0%
	AGAAGAGCTTGACAAGGAAA+GGG	+	chr3_1:1302371-1302390	Msa0343300:CDS	40.0%
	GAGACATTGAATACTGAGCT+TGG	+	chr3_1:1302402-1302421	Msa0343300:CDS	40.0%
	AGTAGAACTTGAGCAGGAAA+AGG	+	chr3_1:1302434-1302453	Msa0343300:CDS	40.0%
	CTTAGTATGGCTGTGACAAA+AGG	+	chr3_1:1302483-1302502	Msa0343300:CDS	40.0%
	TATGGCTGTGACAAAAGGAA+AGG	+	chr3_1:1302488-1302507	Msa0343300:CDS	40.0%
!	TGTGACAAAAGGAAAGGCAT+TGG	+	chr3_1:1302494-1302513	Msa0343300:CDS	40.0%
	AGATTCACTAAAGACGTCTC+TGG	+	chr3_1:1302527-1302546	Msa0343300:CDS	40.0%
	TAAGCATTTCTCAAGCTCAC+TGG	-	chr3_1:1302562-1302581	None:intergenic	40.0%
	CTCCTCTTTAGTAAGTTCAG+CGG	-	chr3_1:1302619-1302638	None:intergenic	40.0%
!!	TTAATGGGACTTGGTGAAGC+AGG	+	chr3_1:1301526-1301545	Msa0343300:intron	45.0%
	ATTGAATAATGGCGTAGCGG+GGG	+	chr3_1:1301745-1301764	Msa0343300:CDS	45.0%
	TGAAGCTTGCAGGATCTCAT+TGG	-	chr3_1:1302004-1302023	None:intergenic	45.0%
!	ATCCTTTTCATGTTGGGCCT+CGG	-	chr3_1:1302028-1302047	None:intergenic	45.0%
	GTATTGGACGAGTCTAGAAG+TGG	+	chr3_1:1302114-1302133	Msa0343300:CDS	45.0%
	ACTTGGACAGTCATTCTCTG+AGG	+	chr3_1:1302212-1302231	Msa0343300:CDS	45.0%
!	TGGCTTGGATACTAATGAGC+AGG	+	chr3_1:1302236-1302255	Msa0343300:CDS	45.0%
!	AACATACTTGTTGGTGCTCG+TGG	+	chr3_1:1302267-1302286	Msa0343300:CDS	45.0%
	AGCCGCTGAACTTACTAAAG+AGG	+	chr3_1:1302614-1302633	Msa0343300:CDS	45.0%
	GTTGGCCCAGAGTGAAAATA+TGG	+	chr3_1:1302638-1302657	Msa0343300:CDS	45.0%
	TCTCTCCTTTCTCTCTTGTG+AGG	-	chr3_1:1302883-1302902	None:intergenic	45.0%
!!	TTAATGGGACTTGGTGAAGC+AGG	+	chr3_1:1301526-1301545	Msa0343300:intron	45.0%
	ATTGAATAATGGCGTAGCGG+GGG	+	chr3_1:1301745-1301764	Msa0343300:CDS	45.0%
	TGAAGCTTGCAGGATCTCAT+TGG	-	chr3_1:1302004-1302023	None:intergenic	45.0%
!	ATCCTTTTCATGTTGGGCCT+CGG	-	chr3_1:1302028-1302047	None:intergenic	45.0%
	GTATTGGACGAGTCTAGAAG+TGG	+	chr3_1:1302114-1302133	Msa0343300:CDS	45.0%
	ACTTGGACAGTCATTCTCTG+AGG	+	chr3_1:1302212-1302231	Msa0343300:CDS	45.0%
!	TGGCTTGGATACTAATGAGC+AGG	+	chr3_1:1302236-1302255	Msa0343300:CDS	45.0%
!	AACATACTTGTTGGTGCTCG+TGG	+	chr3_1:1302267-1302286	Msa0343300:CDS	45.0%
	AGCCGCTGAACTTACTAAAG+AGG	+	chr3_1:1302614-1302633	Msa0343300:CDS	45.0%
	GTTGGCCCAGAGTGAAAATA+TGG	+	chr3_1:1302638-1302657	Msa0343300:CDS	45.0%
	TCTCTCCTTTCTCTCTTGTG+AGG	-	chr3_1:1302883-1302902	None:intergenic	45.0%
!!!	TTTAATTTTTAATCAATTAA+TGG	+	chr3_1:1301510-1301529	Msa0343300:intron	5.0%
!!!	TTAATTTTTAATCAATTAAT+GGG	+	chr3_1:1301511-1301530	Msa0343300:intron	5.0%
!!!	TTTTGTTAATTTATTTAATT+TGG	+	chr3_1:1301901-1301920	Msa0343300:intron	5.0%
!!!	TTTAATTTTTAATCAATTAA+TGG	+	chr3_1:1301510-1301529	Msa0343300:intron	5.0%
!!!	TTAATTTTTAATCAATTAAT+GGG	+	chr3_1:1301511-1301530	Msa0343300:intron	5.0%
!!!	TTTTGTTAATTTATTTAATT+TGG	+	chr3_1:1301901-1301920	Msa0343300:intron	5.0%
!	TCGAACGTGATTAGCTCGTC+GGG	-	chr3_1:1301635-1301654	None:intergenic	50.0%
!	GTCGAACGTGATTAGCTCGT+CGG	-	chr3_1:1301636-1301655	None:intergenic	50.0%
	GACGAGCTAATCACGTTCGA+CGG	+	chr3_1:1301635-1301654	Msa0343300:CDS	50.0%
	CACGTTCGACGGTAAGCAAA+AGG	+	chr3_1:1301646-1301665	Msa0343300:CDS	50.0%
	ATCCGAGGCCCAACATGAAA+AGG	+	chr3_1:1302023-1302042	Msa0343300:CDS	50.0%
	GAGGCCCAACATGAAAAGGA+TGG	+	chr3_1:1302027-1302046	Msa0343300:CDS	50.0%
!!	GGACAGTCATTCTCTGAGGT+TGG	+	chr3_1:1302216-1302235	Msa0343300:CDS	50.0%
!!	GTCATTCTCTGAGGTTGGCT+TGG	+	chr3_1:1302221-1302240	Msa0343300:CDS	50.0%
!	ATACTTGTTGGTGCTCGTGG+TGG	+	chr3_1:1302270-1302289	Msa0343300:CDS	50.0%
!	TACTTGTTGGTGCTCGTGGT+GGG	+	chr3_1:1302271-1302290	Msa0343300:CDS	50.0%
	GTTGCTGGAGCTCAAGAGAA+AGG	+	chr3_1:1302293-1302312	Msa0343300:CDS	50.0%
	AGAGCTTGACAAGGAAAGGG+CGG	+	chr3_1:1302374-1302393	Msa0343300:CDS	50.0%
	TCACTAAAGACGTCTCTGGC+TGG	+	chr3_1:1302531-1302550	Msa0343300:CDS	50.0%
	TGACGCCTCACAAGAGAGAA+AGG	+	chr3_1:1302875-1302894	Msa0343300:intron	50.0%
!	TCGAACGTGATTAGCTCGTC+GGG	-	chr3_1:1301635-1301654	None:intergenic	50.0%
!	GTCGAACGTGATTAGCTCGT+CGG	-	chr3_1:1301636-1301655	None:intergenic	50.0%
	GACGAGCTAATCACGTTCGA+CGG	+	chr3_1:1301635-1301654	Msa0343300:CDS	50.0%
	CACGTTCGACGGTAAGCAAA+AGG	+	chr3_1:1301646-1301665	Msa0343300:CDS	50.0%
	ATCCGAGGCCCAACATGAAA+AGG	+	chr3_1:1302023-1302042	Msa0343300:CDS	50.0%
	GAGGCCCAACATGAAAAGGA+TGG	+	chr3_1:1302027-1302046	Msa0343300:CDS	50.0%
!!	GGACAGTCATTCTCTGAGGT+TGG	+	chr3_1:1302216-1302235	Msa0343300:CDS	50.0%
!!	GTCATTCTCTGAGGTTGGCT+TGG	+	chr3_1:1302221-1302240	Msa0343300:CDS	50.0%
!	ATACTTGTTGGTGCTCGTGG+TGG	+	chr3_1:1302270-1302289	Msa0343300:CDS	50.0%
!	TACTTGTTGGTGCTCGTGGT+GGG	+	chr3_1:1302271-1302290	Msa0343300:CDS	50.0%
	GTTGCTGGAGCTCAAGAGAA+AGG	+	chr3_1:1302293-1302312	Msa0343300:CDS	50.0%
	AGAGCTTGACAAGGAAAGGG+CGG	+	chr3_1:1302374-1302393	Msa0343300:CDS	50.0%
	TCACTAAAGACGTCTCTGGC+TGG	+	chr3_1:1302531-1302550	Msa0343300:CDS	50.0%
	TGACGCCTCACAAGAGAGAA+AGG	+	chr3_1:1302875-1302894	Msa0343300:intron	50.0%
!	CGAACGTGATTAGCTCGTCG+GGG	-	chr3_1:1301634-1301653	None:intergenic	55.0%
	GGAACAGTTGCGGGTGAAGT+TGG	+	chr3_1:1301772-1301791	Msa0343300:CDS	55.0%
	GATCCTGCAAGCTTCATCCG+AGG	+	chr3_1:1302008-1302027	Msa0343300:CDS	55.0%
!	CGAACGTGATTAGCTCGTCG+GGG	-	chr3_1:1301634-1301653	None:intergenic	55.0%
	GGAACAGTTGCGGGTGAAGT+TGG	+	chr3_1:1301772-1301791	Msa0343300:CDS	55.0%
	GATCCTGCAAGCTTCATCCG+AGG	+	chr3_1:1302008-1302027	Msa0343300:CDS	55.0%
!	TAATGGCGTAGCGGGGGAGC+AGG	+	chr3_1:1301751-1301770	Msa0343300:CDS	65.0%
	CGGGGGAGCAGGAACAGTTG+CGG	+	chr3_1:1301762-1301781	Msa0343300:CDS	65.0%
	GGGGGAGCAGGAACAGTTGC+GGG	+	chr3_1:1301763-1301782	Msa0343300:CDS	65.0%
	GGGCCTCGGATGAAGCTTGC+AGG	-	chr3_1:1302014-1302033	None:intergenic	65.0%
!!	TGGTGCTCGTGGTGGGTTGC+TGG	+	chr3_1:1302278-1302297	Msa0343300:CDS	65.0%
!	TAATGGCGTAGCGGGGGAGC+AGG	+	chr3_1:1301751-1301770	Msa0343300:CDS	65.0%
	CGGGGGAGCAGGAACAGTTG+CGG	+	chr3_1:1301762-1301781	Msa0343300:CDS	65.0%
	GGGGGAGCAGGAACAGTTGC+GGG	+	chr3_1:1301763-1301782	Msa0343300:CDS	65.0%
	GGGCCTCGGATGAAGCTTGC+AGG	-	chr3_1:1302014-1302033	None:intergenic	65.0%
!!	TGGTGCTCGTGGTGGGTTGC+TGG	+	chr3_1:1302278-1302297	Msa0343300:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	1301127	1303186	1301127	ID=Msa0343300;Name=Msa0343300
chr3_1	mRNA	1301127	1303186	1301127	ID=Msa0343300-mRNA-1;Parent=Msa0343300;Name=Msa0343300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=234\|0.66\|0.5\|0.75\|1\|1\|4\|0\|399
chr3_1	exon	1301127	1301459	1301127	ID=Msa0343300-mRNA-1:exon:458;Parent=Msa0343300-mRNA-1
chr3_1	exon	1301548	1301838	1301548	ID=Msa0343300-mRNA-1:exon:459;Parent=Msa0343300-mRNA-1
chr3_1	exon	1301934	1302710	1301934	ID=Msa0343300-mRNA-1:exon:460;Parent=Msa0343300-mRNA-1
chr3_1	exon	1303154	1303186	1303154	ID=Msa0343300-mRNA-1:exon:461;Parent=Msa0343300-mRNA-1
chr3_1	five_prime_UTR	1301127	1301360	1301127	ID=Msa0343300-mRNA-1:five_prime_utr;Parent=Msa0343300-mRNA-1
chr3_1	CDS	1301361	1301459	1301361	ID=Msa0343300-mRNA-1:cds;Parent=Msa0343300-mRNA-1
chr3_1	CDS	1301548	1301838	1301548	ID=Msa0343300-mRNA-1:cds;Parent=Msa0343300-mRNA-1
chr3_1	CDS	1301934	1302710	1301934	ID=Msa0343300-mRNA-1:cds;Parent=Msa0343300-mRNA-1
chr3_1	CDS	1303154	1303186	1303154	ID=Msa0343300-mRNA-1:cds;Parent=Msa0343300-mRNA-1

Gene Sequence

>Msa0343300

ATGTCTGAGAATAATCACTTATCGGAGCAGATTTTGGATTCGGATTCTCAATCAAATGGGGTTAATACCGAATCAAACATTGATACTTATCAAAATCAGGTAACACATGTTGATCTAAAAGATGAAGTTTTGGGAGAATCTGAAGATGTTAAATCTACAGAGGATAACATGTTTGTTGATTGCCCCGACGAGCTAATCACGTTCGACGGTAAGCAAAAGGAAGAAGAAGCTGTAGCTGCTGATGAAAATGAAGAGGAAAGTCAAATTATGCATCAACAACAGAGTCATTTTGGTGAATTGAATAATGGCGTAGCGGGGGAGCAGGAACAGTTGCGGGTGAAGTTGGAGAATGCTGTTGCTGAGAAAGAAAGTGTTGTGAATGAATATCAGGAGCTTTTATCTGTGAGGGATCGCGAGATAGAGAATCTAAATGCAAAGGTTTCACAATTAATGATATCCAATGAGATCCTGCAAGCTTCATCCGAGGCCCAACATGAAAAGGATGGTGATATTGACAATGTGATAGATAGGACGATATCCTCTCTTGCAAGTGTTGTTAATCAAGGGCAAGTATTGGACGAGTCTAGAAGTGGGAAAATAGTATATATCGAGGAAAGCACTGCACTCTTGATTGAAAAGTATAATCAAATGCTTTCTGATATTTATCAACTTGGACAGTCATTCTCTGAGGTTGGCTTGGATACTAATGAGCAGGAATTTGGAAACATACTTGTTGGTGCTCGTGGTGGGTTGCTGGAGCTCAAGAGAAAGGAAGATGATTTGATTGAAAAGCTGTCTCATGTAGAAGGCGAAAATCAGAAATTGGTAGAAGAGCTTGACAAGGAAAGGGCGGTGATAGAGACATTGAATACTGAGCTTGGAAATATAAAAGTAGAACTTGAGCAGGAAAAGGTCAAATCTGCTAATACCAAAGAGAAACTTAGTATGGCTGTGACAAAAGGAAAGGCATTGGTACAACAGCGAGATTCACTAAAGACGTCTCTGGCTGGTAAATCCAGTGAGCTTGAGAAATGCTTAATTGAATTGCAGGAGAAGTCAGCTGCACTAGAAGCCGCTGAACTTACTAAAGAGGAGTTGGCCCAGAGTGAAAATATGGTTGCATCCCTGAATACTTCACTACAACAAAATAATTCCATTTTTGAGCAAGAACCAAAAACAGCTATAGCTATTCCAAATTGA

Protein sequence

>Msa0343300

MSENNHLSEQILDSDSQSNGVNTESNIDTYQNQVTHVDLKDEVLGESEDVKSTEDNMFVDCPDELITFDGKQKEEEAVAADENEEESQIMHQQQSHFGELNNGVAGEQEQLRVKLENAVAEKESVVNEYQELLSVRDREIENLNAKVSQLMISNEILQASSEAQHEKDGDIDNVIDRTISSLASVVNQGQVLDESRSGKIVYIEESTALLIEKYNQMLSDIYQLGQSFSEVGLDTNEQEFGNILVGARGGLLELKRKEDDLIEKLSHVEGENQKLVEELDKERAVIETLNTELGNIKVELEQEKVKSANTKEKLSMAVTKGKALVQQRDSLKTSLAGKSSELEKCLIELQEKSAALEAAELTKEELAQSENMVASLNTSLQQNNSIFEQEPKTAIAIPN*