AlfalfaGEDB | Msa1134180

M. sativa cultivar zhongmu-4 / Msa1134180

KEGG: K12471
GO: -
PFAM: PF01417.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134180	XP_003621026.1	95.464	970	22	4	1	949	1	969	0.0	1852

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134180	sp\|Q93YP4\|EPN3_ARATH	44.424	1103	380	46	1	949	1	1024	0.0	640

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134180	A2Q4X4	95.464	970	22	4	1	949	1	969	0.0	1852

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0382460	Msa1134180	0.852899	3.409310e-61	-8.615850e-47
Msa0474380	Msa1134180	0.801876	7.320942e-49	-8.615850e-47
Msa0476960	Msa1134180	0.856943	2.284732e-62	-8.615850e-47
Msa0518190	Msa1134180	0.812934	3.302237e-51	-8.615850e-47
Msa0518800	Msa1134180	0.802518	5.400045e-49	-8.615850e-47
Msa0575380	Msa1134180	0.802380	5.766944e-49	-8.615850e-47
Msa0631820	Msa1134180	0.801790	7.623474e-49	-8.615850e-47
Msa0670580	Msa1134180	0.806717	7.181327e-50	-8.615850e-47
Msa0866080	Msa1134180	0.821629	3.646709e-53	-8.615850e-47
Msa1004110	Msa1134180	0.964731	1.067377e-123	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134180	MtrunA17_Chr7g0214661	95.464	970	22	4	1	949	1	969	0.0	1852
Msa1134180	MtrunA17_Chr1g0151921	49.309	217	83	4	3	192	5	221	1.05e-60	216
Msa1134180	MtrunA17_Chr1g0151921	46.835	79	37	1	777	855	447	520	8.89e-13	72.0
Msa1134180	MtrunA17_Chr7g0214591	72.143	140	16	2	29	157	17	144	1.30e-57	194
Msa1134180	MtrunA17_Chr7g0214601	94.030	67	3	1	196	262	1	66	2.78e-32	119
Msa1134180	MtrunA17_Chr7g0214581	78.049	82	10	1	534	615	1	74	1.49e-30	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1134180	AT3G59290.1	44.424	1103	380	46	1	949	1	1024	0.0	640
Msa1134180	AT2G43160.3	47.403	924	295	36	1	864	1	793	0.0	613
Msa1134180	AT2G43160.2	47.403	924	295	36	1	864	1	793	0.0	613
Msa1134180	AT2G43160.5	47.403	924	295	36	1	864	1	793	0.0	613
Msa1134180	AT2G43160.1	47.403	924	295	36	1	864	1	793	0.0	613
Msa1134180	AT2G43160.4	52.067	653	199	24	1	591	1	601	8.09e-169	507
Msa1134180	AT5G11710.2	52.153	209	70	4	3	188	5	206	9.67e-60	214
Msa1134180	AT5G11710.1	52.153	209	70	4	3	188	5	206	9.67e-60	214
Msa1134180	AT5G11710.3	52.153	209	70	4	3	188	5	206	9.67e-60	214

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Find 323 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAAAATTAGACATGT+CGG	0.624530	7_4:+586530	None:intergenic
AAACTTTCTGAGCAAAATTC+GGG	0.395642	7_4:-587834	Msa1134180:CDS
AAAGCTATGGGATCAGGTTC+AGG	0.405979	7_4:-585334	Msa1134180:CDS
AAATTATTGGACCCAGAGGA+TGG	0.560427	7_4:+587051	None:intergenic
AACAGTTCAGCTCCTACTTT+TGG	0.301573	7_4:-586351	Msa1134180:CDS
AACGGAACGAATTGGTGCGT+CGG	0.668463	7_4:+592252	None:intergenic
AACTGGGAGTTAGCAGAGAA+AGG	0.518088	7_4:+586453	None:intergenic
AACTGTGATGCTTGATCAGT+TGG	0.447537	7_4:+585790	None:intergenic
AAGAAAGAATCGTAGAGGTT+AGG	0.456321	7_4:-590250	Msa1134180:CDS
AAGAAAGTGCTCAAAGTTCC+TGG	0.395628	7_4:-591128	Msa1134180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATAACAACACAGAAGAG+AGG	-	chr7_4:584713-584732	Msa1134180:three_prime_UTR	30.0%
TCTTCAACATGAATCATTCA+AGG	+	chr7_4:585035-585054	None:intergenic	30.0%
TACGTGGAAAAAATTTGAAG+TGG	-	chr7_4:585486-585505	Msa1134180:intron	30.0%
CAATTAATGGTAACACTTAC+AGG	+	chr7_4:585760-585779	None:intergenic	30.0%
ATTTAGATGTCAAAGCTTAC+GGG	+	chr7_4:586205-586224	None:intergenic	30.0%
ATTCGGAATACTTTATGTTC+TGG	-	chr7_4:586363-586382	Msa1134180:CDS	30.0%
AATCAGTAAATGATGCAGAA+GGG	+	chr7_4:586400-586419	None:intergenic	30.0%
AGAGATCAAGGAAAAATGTT+AGG	-	chr7_4:586745-586764	Msa1134180:intron	30.0%
TGATAAAGAAAGAATCGTAG+AGG	-	chr7_4:586800-586819	Msa1134180:intron	30.0%
ATATCAGTAGAATTGTTGAG+AGG	+	chr7_4:586865-586884	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	584652	592425	584652	ID=Msa1134180;Name=Msa1134180
chr7_4	mRNA	584652	592425	584652	ID=Msa1134180-mRNA-1;Parent=Msa1134180;Name=Msa1134180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=240\|0.92\|0.92\|1\|0.92\|0.85\|14\|381\|949
chr7_4	exon	584652	585469	584652	ID=Msa1134180-mRNA-1:exon:260;Parent=Msa1134180-mRNA-1
chr7_4	exon	585575	586670	585575	ID=Msa1134180-mRNA-1:exon:259;Parent=Msa1134180-mRNA-1
chr7_4	exon	587044	587222	587044	ID=Msa1134180-mRNA-1:exon:258;Parent=Msa1134180-mRNA-1
chr7_4	exon	587481	587701	587481	ID=Msa1134180-mRNA-1:exon:257;Parent=Msa1134180-mRNA-1
chr7_4	exon	587777	587866	587777	ID=Msa1134180-mRNA-1:exon:256;Parent=Msa1134180-mRNA-1
chr7_4	exon	588034	588075	588034	ID=Msa1134180-mRNA-1:exon:255;Parent=Msa1134180-mRNA-1
chr7_4	exon	589509	589850	589509	ID=Msa1134180-mRNA-1:exon:254;Parent=Msa1134180-mRNA-1
chr7_4	exon	590224	590336	590224	ID=Msa1134180-mRNA-1:exon:253;Parent=Msa1134180-mRNA-1
chr7_4	exon	590506	590589	590506	ID=Msa1134180-mRNA-1:exon:252;Parent=Msa1134180-mRNA-1
chr7_4	exon	590721	590799	590721	ID=Msa1134180-mRNA-1:exon:251;Parent=Msa1134180-mRNA-1
chr7_4	exon	590873	590952	590873	ID=Msa1134180-mRNA-1:exon:250;Parent=Msa1134180-mRNA-1
chr7_4	exon	591115	591166	591115	ID=Msa1134180-mRNA-1:exon:249;Parent=Msa1134180-mRNA-1
chr7_4	exon	591318	591404	591318	ID=Msa1134180-mRNA-1:exon:248;Parent=Msa1134180-mRNA-1
chr7_4	exon	592238	592425	592238	ID=Msa1134180-mRNA-1:exon:247;Parent=Msa1134180-mRNA-1
chr7_4	five_prime_UTR	592238	592425	592238	ID=Msa1134180-mRNA-1:five_prime_utr;Parent=Msa1134180-mRNA-1
chr7_4	five_prime_UTR	591353	591404	591353	ID=Msa1134180-mRNA-1:five_prime_utr;Parent=Msa1134180-mRNA-1
chr7_4	CDS	591318	591352	591318	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	591115	591166	591115	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	590873	590952	590873	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	590721	590799	590721	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	590506	590589	590506	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	590224	590336	590224	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	589509	589850	589509	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	588034	588075	588034	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	587777	587866	587777	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	587481	587701	587481	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	587044	587222	587044	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	585575	586670	585575	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	CDS	585033	585469	585033	ID=Msa1134180-mRNA-1:cds;Parent=Msa1134180-mRNA-1
chr7_4	three_prime_UTR	584652	585032	584652	ID=Msa1134180-mRNA-1:three_prime_utr;Parent=Msa1134180-mRNA-1

Gene Sequence

>Msa1134180

ATGAAGAAGGTTTTTGGTCAAACTGTTAGGGACCTTAAAAGAGAAGTGAACAAGAAAGTGCTCAAAGTTCCTGGCATTGAACAGAAGGTTCTTGATGCTACTAGCAATGAACCATGGGGTCCTCATGGAACACTGCTTGCAGACATTGCTCAGGCAACTAGAAACCCTCATGAATACCAGATGATCATGTCAGTAGTCTGGAAACGAATTAACGACACTGGCAAGAATTGGCGGCATGTCTACAAGGCTTTGACAGTACTTGAGTACTTGGTGGCTCATGGTTCTGAGAGAGTCATAGATGAGATCAAAGAACATTCTTATCAAATATCGTGGAAGAGATCAAGGAAAAATGTTAGGAAAAAATCTCAGAATCTCGTTGTCCTTGTGAATGATAAAGAAAGAATCGTAGAGGTTAGGCAGAAGGCTGCTGTTAATAGGGAAAAGTTTCGCAATAATACACCAGGTGGAATGTATAGACCTGGTTCACACTCAAGCATTGGAAGCTATGGTGATCGATATGAAGAAGATCGTTATGCGAGCAGGGAGGAAGATAGAAATGGCTATGGTTATGGAAGAGAAAGAGAAATGGGCTCTAGAGATGATGATCGGTACAATCGCGATGGAGATCGTTATGGTAGAGATTATGAGGAACGTTACGGTAGGGACGGTTACAGAGATGATGATAGGGGAAGAAGTCGAAGTGTTGACTACAATTATGATGATACAAGGAGCAGGAATTCTGATAGAGATCGTGATTTCGATGACGATGGCCAACACTCGTCTCGAGGTAGCAATGCTAAAGTTGAAGACCAATCACTGGAAGCAAGACTTCAGCGGAAACTTTCTGAGCAAAATTCGGGTGCTCCTCCTAGTTATGAAGAGGCTGTTGGTGAAGCTCAGAGCCCTGTGCCTGAAAGGGATGTTGAAACTTCGGCAGAATCTGCTCCAAGAGGCTCGTCCCCTCATGCAAGTGATAATCCTAGCCTAACCTCTGCTCCTACTGGATCTTCTCCTGTAAACAATAATCCAACTGAAGTAACTGCTGCTGCCAGTACATCTGTTGCTGCTAGTACTGCTGTTTCTACTCAGGAAACTGAGCCCACTGATGATTTCTTTGACCCACGTGGTCCTACATCAGCTGCTCCAACCACTTCTAATTTTGGCGAAATAGATTTGCTCGGTTCTTTATCAGACTCATTCTCTTCAAATGCTCTGCCTCTTGTGCCCGCTACATCAGGAATTTCAACCCCTGAAGCAAACACTGGTTCAACAGCTTCTTTTGCAGCACCATCCTCTGGGTCCAATAATTTCAATCAGTCTTTTGAAGATCCGTTTGGTGATTCACCATTCAAGGCTGATACTTCTGTTGAAACTGCTCCATCTCAACACCATGCACCTCAGACTACTGAACCATCCCAATCAGATGGTTTTAATGCCGACATGTCTAATTTTGGGTTTGGGGACTCATTTTCTATTGTACCATACTCTGCATCTGCTCCCAGTGACACTCAACCTTTCTCTGCTAACTCCCAGTTTTTGTCCCAAGATTCGGAAACTGATATTCTAGCTGACATTCTTCCTCCTGCACCATTACCTGAGATGACATCACAGCAGAACAGTTCAGCTCCTACTTTTGGCCAACCTTCACCTTCCTTTTCAACTTCATCTGGACCATTTTCTGAACCAACTGGTCAACTTACTCCTCATCAAGGTTTCTCAGCTGCAACCAATCAACCTGCACAAACCCTTCCAAGTGGTCAATTTTCCCAGCCAGGCTTTTCAGCTTCTAGTTCATCTTTTTCAGCCTCTACCAGTCCATATGCACAGCAACCCTTTCCTTCTCATTCTGGTCAACCTGGCATGCCTGGGTTCTCGTCATCTACTGGCCATTCTATGCAGCCACCTTTTGCTTCTCAAGGCGGTCAATCTACTGCACAAACAAGCGGTCATACCTACGGTGGATTGTACTCCCTGGATACATCTCTTACTCCAGGAGCTCAAAACATGTATTCTCAATCACAAAATGGATATAATGGATCTATGAACAGTGGGAACTACTTGCCACAGGGATCCTCAACAGGCTTTCCTTCACAAATGACTCCCCAAGCTCCAACAGCACAACCGGCACAAATCACAAACTTTCCCCATCATGGAGGATCTACTGCTTCTCCCTCTCCAACTGATCAAGCATCACAGTTCAACAACCAGAGCTTCTTTGGACAACAAGGGAATGCAGCTCCCTTTAGCTCATCATATACCCATCAAGTGCCTGCTCCCAATGCTTCACCGTATGCTATTTCAGCGGCACCAAATTCTTTAGTTTCTCAACCATCCAAAGATAAGTTTGAAACAAAATCAACAGTTTGGGCAGACACATTAAGCAGGGGACTGGTTAATTTAAACATATCTGGACCTAAAACTAATCCGTTAGCAGATATTGGCATTGACTTCGAATCCATTAATAGGAAGGAAAAGAGAATGGAGAAGCCCACTAACACACCTGTAACATCAACTGTAAATATGGGTAAAGCTATGGGATCAGGTTCAGGCATAGGTCGTGCTGGTGCTGGTGCTCTTAGACCTAATCCAAATTCGATGATGGGTTCTGGTATGGGCATGGGTATGGGAATGGGCAATGCTCCCGGTGGTATGGGTATGGGAGGTTACGGAGGAGGCATGACATCCATGGGTATGGGTATGGGTGGTATGGGGGGGATAGGCATGGGGCAAGGATACCAGATGCAACCTCCTAATGGAATGCCTCCTGGTTCCAACATGCCAGGTAACTATAATAATAACATGATGCGTCCCGGTGGTTATGCTCAACAGCCATATGGTGGATACCGATGA

Protein sequence

>Msa1134180

MKKVFGQTVRDLKREVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNPHEYQMIMSVVWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDEIKEHSYQISWKRSRKNVRKKSQNLVVLVNDKERIVEVRQKAAVNREKFRNNTPGGMYRPGSHSSIGSYGDRYEEDRYASREEDRNGYGYGREREMGSRDDDRYNRDGDRYGRDYEERYGRDGYRDDDRGRSRSVDYNYDDTRSRNSDRDRDFDDDGQHSSRGSNAKVEDQSLEARLQRKLSEQNSGAPPSYEEAVGEAQSPVPERDVETSAESAPRGSSPHASDNPSLTSAPTGSSPVNNNPTEVTAAASTSVAASTAVSTQETEPTDDFFDPRGPTSAAPTTSNFGEIDLLGSLSDSFSSNALPLVPATSGISTPEANTGSTASFAAPSSGSNNFNQSFEDPFGDSPFKADTSVETAPSQHHAPQTTEPSQSDGFNADMSNFGFGDSFSIVPYSASAPSDTQPFSANSQFLSQDSETDILADILPPAPLPEMTSQQNSSAPTFGQPSPSFSTSSGPFSEPTGQLTPHQGFSAATNQPAQTLPSGQFSQPGFSASSSSFSASTSPYAQQPFPSHSGQPGMPGFSSSTGHSMQPPFASQGGQSTAQTSGHTYGGLYSLDTSLTPGAQNMYSQSQNGYNGSMNSGNYLPQGSSTGFPSQMTPQAPTAQPAQITNFPHHGGSTASPSPTDQASQFNNQSFFGQQGNAAPFSSSYTHQVPAPNASPYAISAAPNSLVSQPSKDKFETKSTVWADTLSRGLVNLNISGPKTNPLADIGIDFESINRKEKRMEKPTNTPVTSTVNMGKAMGSGSGIGRAGAGALRPNPNSMMGSGMGMGMGMGNAPGGMGMGGYGGGMTSMGMGMGGMGGIGMGQGYQMQPPNGMPPGSNMPGNYNNNMMRPGGYAQQPYGGYR*