AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476960 MtrunA17_Chr3g0137621 99.213 635 5 0 1 635 1 635 0.0 1305
Msa0476960 MtrunA17_Chr4g0064081 57.298 644 217 11 1 635 1 595 0.0 737
Msa0476960 MtrunA17_Chr2g0278681 45.963 644 275 11 1 618 1 597 1.27e-167 496
Msa0476960 MtrunA17_Chr8g0336601 44.038 629 289 12 1 618 1 577 1.65e-164 488
Msa0476960 MtrunA17_Chr3g0119631 43.503 354 151 5 4 357 3 307 6.82e-94 313
Msa0476960 MtrunA17_Chr8g0376161 33.997 603 275 18 2 580 3 506 6.31e-76 256
Msa0476960 MtrunA17_Chr8g0387591 93.798 129 6 1 636 762 816 944 2.90e-72 254
Msa0476960 MtrunA17_Chr4g0071851 30.169 590 316 13 2 577 3 510 5.67e-58 207
Msa0476960 MtrunA17_Chr2g0298681 33.983 359 180 8 2 355 3 309 1.42e-57 206
Msa0476960 MtrunA17_Chr2g0301511 69.767 129 37 1 636 762 803 931 4.64e-53 198
Msa0476960 MtrunA17_Chr3g0131401 65.891 129 42 1 636 762 795 923 2.62e-48 184
Msa0476960 MtrunA17_Chr7g0238371 65.891 129 42 1 636 762 723 851 5.13e-48 182
Msa0476960 MtrunA17_Chr1g0192121 66.667 129 41 1 636 762 757 885 3.93e-47 180
Msa0476960 MtrunA17_Chr7g0272591 65.116 129 43 1 636 762 767 895 9.45e-47 179
Msa0476960 MtrunA17_Chr8g0385411 59.690 129 50 1 636 762 770 898 3.97e-44 171
Msa0476960 MtrunA17_Chr3g0131361 56.349 126 53 1 639 762 785 910 7.62e-39 155
Msa0476960 MtrunA17_Chr3g0131381 57.364 129 53 1 636 762 789 917 2.33e-38 153
Msa0476960 MtrunA17_Chr4g0061441 56.154 130 54 2 636 762 701 830 6.48e-38 152
Msa0476960 MtrunA17_Chr4g0064391 46.053 152 79 2 2 151 5 155 1.58e-37 148
Msa0476960 MtrunA17_Chr4g0064391 28.493 365 199 9 227 577 172 488 6.89e-28 119
Msa0476960 MtrunA17_Chr8g0392221 26.629 353 203 6 6 353 5 306 2.57e-33 133
Msa0476960 MtrunA17_Chr6g0476971 27.324 355 199 6 4 352 7 308 2.79e-28 117
Msa0476960 MtrunA17_Chr2g0305391 26.837 313 167 6 32 341 17 270 3.95e-27 116
Msa0476960 MtrunA17_Chr8g0375541 36.424 151 82 4 5 149 3 145 2.59e-20 94.0
Msa0476960 MtrunA17_Chr1g0162241 35.570 149 82 4 7 149 8 148 2.40e-17 84.7
Msa0476960 MtrunA17_Chr8g0381681 30.220 182 117 5 1 178 1 176 4.01e-16 80.5
Msa0476960 MtrunA17_Chr3g0123621 33.333 147 93 3 6 150 5 148 1.03e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476960 AT2G25430.1 75.115 655 122 14 5 633 4 643 0.0 895
Msa0476960 AT4G32285.1 72.598 635 153 9 5 632 4 624 0.0 862
Msa0476960 AT4G32285.2 72.598 635 153 9 5 632 4 624 0.0 862
Msa0476960 AT1G03050.1 46.071 649 252 15 1 610 1 590 0.0 532
Msa0476960 AT4G02650.1 44.665 656 281 15 1 626 1 604 2.52e-162 483
Msa0476960 AT1G05020.1 40.199 403 180 6 4 400 3 350 1.98e-94 308
Msa0476960 AT4G25940.1 31.954 604 300 18 2 572 3 528 3.54e-71 244
Msa0476960 AT1G14910.1 33.645 535 262 18 2 514 3 466 2.80e-69 241
Msa0476960 AT1G14910.2 33.271 535 259 19 2 514 3 461 1.03e-65 231
Msa0476960 AT2G01600.1 30.210 619 306 19 2 594 3 521 6.74e-64 224
Msa0476960 AT1G64060.1 83.721 129 19 1 636 762 816 944 1.94e-62 226
Msa0476960 AT5G57200.1 34.722 360 175 8 2 355 3 308 9.49e-61 216
Msa0476960 AT4G11230.1 67.442 129 40 1 636 762 813 941 4.67e-50 190
Msa0476960 AT5G47910.1 61.240 129 48 1 636 762 793 921 5.74e-47 180
Msa0476960 AT5G60010.1 65.891 129 42 1 636 762 758 886 6.25e-47 180
Msa0476960 AT1G19230.1 63.566 129 45 1 636 762 798 926 5.36e-46 177
Msa0476960 AT3G45810.1 64.341 129 44 1 636 762 784 912 5.64e-46 177
Msa0476960 AT1G19230.2 63.566 129 45 1 636 762 824 952 6.03e-46 177
Msa0476960 AT5G51060.1 63.566 129 45 1 636 762 777 905 8.28e-46 177
Msa0476960 AT5G07390.1 63.566 129 45 1 636 762 774 902 2.47e-45 175
Msa0476960 AT1G09090.2 63.566 129 45 1 636 762 715 843 4.43e-45 174
Msa0476960 AT4G25090.1 59.690 129 50 1 636 762 721 849 3.22e-44 171
Msa0476960 AT4G25090.2 59.690 129 50 1 636 762 709 837 4.12e-44 171
Msa0476960 AT5G35200.1 43.919 148 80 2 6 151 11 157 5.36e-34 137
Msa0476960 AT5G35200.1 30.033 303 175 9 221 512 166 442 8.10e-24 106
Msa0476960 AT5G35200.2 43.919 148 80 2 6 151 11 157 5.36e-34 137
Msa0476960 AT5G35200.2 30.033 303 175 9 221 512 166 442 8.10e-24 106
Msa0476960 AT5G07390.2 65.625 96 31 1 636 729 742 837 2.44e-32 135
Msa0476960 AT1G68110.1 26.836 354 186 11 7 353 5 292 2.26e-18 88.2
Msa0476960 AT1G33340.1 35.099 151 92 2 3 150 6 153 1.95e-17 85.5
Msa0476960 AT4G40080.1 34.014 147 91 4 10 150 11 157 1.09e-15 80.1
Msa0476960 AT1G25240.1 35.811 148 81 5 7 148 5 144 2.61e-15 79.0
Msa0476960 AT1G25240.2 35.811 148 81 5 7 148 6 145 2.77e-15 79.0

Find 275 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGAGTTGATATTGTTTC+TGG 0.098642 3_3:+80899529 Msa0476960:CDS
AGGAGCATTTCTAACTAATT+TGG 0.161404 3_3:+80899958 Msa0476960:exon
ATTGAAGACATTGACTTAAT+TGG 0.204361 3_3:+80900177 Msa0476960:three_prime_UTR
TTATTGTGGTGCGCCGGTTT+TGG 0.219784 3_3:+80899869 Msa0476960:CDS
TCTTTCCTCTCTGGACTCTT+TGG 0.225582 3_3:-80894021 None:intergenic
TGCTAGCAGTGTGGCGTTGC+CGG 0.225948 3_3:+80894521 Msa0476960:CDS
TGCTAGGCCTAATAGGAAAA+AGG 0.254620 3_3:+80899693 Msa0476960:CDS
CTAGTAATTCTTTGAACTTC+CGG 0.266921 3_3:-80893949 None:intergenic
TCAGGCTCTGGTGGAGGTGG+CGG 0.270903 3_3:-80894132 None:intergenic
TTCTTGGCTTGTAGGCCAAC+TGG 0.276217 3_3:+80893685 Msa0476960:CDS
GGAGGTCCCATTCCATGAAC+TGG 0.286179 3_3:-80894819 None:intergenic
GAGTCATTTGCAGAGGCTTT+TGG 0.294432 3_3:+80893657 Msa0476960:CDS
TGGATCGTTTCTTGGCTTGT+AGG 0.296888 3_3:+80893677 Msa0476960:CDS
TGCACAGATCCATCTGGGGC+TGG 0.298625 3_3:-80894579 None:intergenic
ATACATGCCATTCAACAATA+AGG 0.303811 3_3:-80894445 None:intergenic
ATGAGGCTCATTCAAGTTCT+TGG 0.306921 3_3:+80893320 Msa0476960:CDS
CAGGCTCTGGTGGAGGTGGC+GGG 0.310633 3_3:-80894131 None:intergenic
GTGGTGGAGGTGGGGATGAG+AGG 0.323272 3_3:+80893437 Msa0476960:CDS
TCCTCCGTAAACTGCGGTTT+TGG 0.326695 3_3:-80894162 None:intergenic
AAGAATTACTAGTAAGTTGT+TGG 0.329377 3_3:+80893960 Msa0476960:CDS
CAAACCCCTGCAGCTGAACC+TGG 0.330516 3_3:+80894339 Msa0476960:CDS
TTTGCGTTGGCACTCTTTGC+TGG 0.331820 3_3:+80894237 Msa0476960:CDS
TCTAGGCAGAAGAATGCTTT+AGG 0.335417 3_3:+80894408 Msa0476960:CDS
ACAGGTGTTGTGGTCTTTCC+CGG 0.343337 3_3:-80894546 None:intergenic
GGTAGTGTTGGTGGTGGTGG+TGG 0.343928 3_3:+80893421 Msa0476960:CDS
TGCCAAGCTGAAGTTACTTC+CGG 0.346193 3_3:-80894318 None:intergenic
GTGGGAGAGAAAATAATTTC+AGG 0.350857 3_3:+80893464 Msa0476960:CDS
ACAAGAGGAGGAGCCGGTTC+AGG 0.352668 3_3:+80894065 Msa0476960:CDS
TGAGGATAAAGAAAGATAAA+AGG 0.352772 3_3:+80900253 Msa0476960:three_prime_UTR
TGCTGATATATGCGAGGTTT+TGG 0.359618 3_3:+80893777 Msa0476960:CDS
TCAGGCTCAGGCTCTGGTGG+AGG 0.361839 3_3:-80894138 None:intergenic
TTGTTGCTTCTTCTCCATTT+CGG 0.363887 3_3:-80894667 None:intergenic
CAGTGTGGCGTTGCCGGGAC+CGG 0.367032 3_3:+80894527 Msa0476960:CDS
GGAGCTTCCTCTTTCCTCTC+TGG 0.367047 3_3:-80894030 None:intergenic
GGCGAGATCCTCCGAGTATC+CGG 0.368486 3_3:+80893930 Msa0476960:CDS
TAGAAACATAGGGCTGAAAA+TGG 0.370806 3_3:+80900343 Msa0476960:three_prime_UTR
GCTGGTAGTGTTGGTGGTGG+TGG 0.373659 3_3:+80893418 Msa0476960:CDS
TGCAGTCACTGCAGACGATC+AGG 0.373792 3_3:+80894206 Msa0476960:CDS
TGTCGGGGAATGATGATAGA+AGG 0.374281 3_3:+80893578 Msa0476960:CDS
GGCTCAGGCTCTGGTGGAGG+TGG 0.378487 3_3:-80894135 None:intergenic
GAGCAACATGGCGCCGGAAT+TGG 0.378632 3_3:+80893018 Msa0476960:CDS
ATAATCTCTTCCTGGAAAAT+CGG 0.381274 3_3:-80893247 None:intergenic
ATCTGTGCAGCCAGTTAATC+AGG 0.381955 3_3:+80894593 Msa0476960:CDS
TGCATTGTATCCGTTGGTTA+AGG 0.382273 3_3:+80893738 Msa0476960:CDS
GCCTAGTTTATTAAGTTCTT+CGG 0.389157 3_3:-80899892 None:intergenic
TCAAAGGCCTTCACACAATC+AGG 0.395986 3_3:-80893835 None:intergenic
TTTGGCTCAGGCTCAGGCTC+TGG 0.396279 3_3:-80894144 None:intergenic
CCACATCAATTTGCTATAAC+GGG 0.396873 3_3:-80899993 None:intergenic
TTAAGTTCTTCGGCCAAAAC+CGG 0.397541 3_3:-80899882 None:intergenic
GCCACATCAATTTGCTATAA+CGG 0.402560 3_3:-80899994 None:intergenic
AAATTAAACAAATGAGTTGA+TGG 0.402688 3_3:+80900641 Msa0476960:three_prime_UTR
GCTTTCCCAGGTTCAGCTGC+AGG 0.404670 3_3:-80894345 None:intergenic
TCAGCTGTGTCCAAGCGATT+GGG 0.406593 3_3:+80893154 Msa0476960:CDS
CTTCTGCCTAGATAAATTGC+TGG 0.406648 3_3:-80894397 None:intergenic
CTGGGTTGGCTAAGAACAAT+AGG 0.407625 3_3:+80893704 Msa0476960:CDS
TAGCATACATAATCTCTTCC+TGG 0.407692 3_3:-80893255 None:intergenic
ACTTCCGGCTGTCCATTTGA+TGG 0.408563 3_3:-80894303 None:intergenic
TGCTTGAACTATGGTGATAA+GGG 0.411857 3_3:-80899491 None:intergenic
TATGGAGGTGGACAATTTAG+AGG 0.412015 3_3:+80893508 Msa0476960:CDS
CTTTCCCAGGTTCAGCTGCA+GGG 0.412658 3_3:-80894344 None:intergenic
CTTGATCCCTTATTGTTGAA+TGG 0.413257 3_3:+80894438 Msa0476960:CDS
GTTGTGGTCTTTCCCGGTCC+CGG 0.413441 3_3:-80894540 None:intergenic
GCGAACGGATCCTGATTAAC+TGG 0.416129 3_3:-80894603 None:intergenic
CTATGTGCAAATGGCCGAAA+TGG 0.416745 3_3:+80894653 Msa0476960:CDS
CCGGCTAATAATAATGCAAA+TGG 0.417868 3_3:+80894264 Msa0476960:CDS
TGGGAAGCCTTTCCATCAAA+TGG 0.420108 3_3:+80894291 Msa0476960:CDS
GATTGGGGAAGACGCGTGAT+TGG 0.420367 3_3:+80893170 Msa0476960:CDS
TAAAAGGAGGTAAGGGGACA+AGG 0.423961 3_3:+80900269 Msa0476960:three_prime_UTR
TTCAGCTGTGTCCAAGCGAT+TGG 0.424563 3_3:+80893153 Msa0476960:CDS
AAGAAAGATAAAAGGAGGTA+AGG 0.424582 3_3:+80900261 Msa0476960:three_prime_UTR
ACAATCGCCACCTCCAATTC+CGG 0.424606 3_3:-80893031 None:intergenic
GTGCTTGAACTATGGTGATA+AGG 0.425220 3_3:-80899492 None:intergenic
TTGAACAATATCATATAATC+AGG 0.425792 3_3:-80900016 None:intergenic
AGAAAGATAAAAGGAGGTAA+GGG 0.425927 3_3:+80900262 Msa0476960:three_prime_UTR
GCACAGATCCATCTGGGGCT+GGG 0.426777 3_3:-80894578 None:intergenic
TCCTCTTGTACTTCCAGCTT+AGG 0.430283 3_3:-80894051 None:intergenic
TGAGCCAAAACCGCAGTTTA+CGG 0.430872 3_3:+80894158 Msa0476960:CDS
CCACCGAATGAGTATGAGTA+TGG 0.432260 3_3:+80893490 Msa0476960:CDS
TGAACCTGGGAAAGCGGATT+GGG 0.433469 3_3:+80894353 Msa0476960:CDS
ATCTCGTTCATATCCTGAAC+CGG 0.433714 3_3:-80894078 None:intergenic
ACTGGCTGCACAGATCCATC+TGG 0.435637 3_3:-80894585 None:intergenic
TTGTTACTGTGACTCCTTTG+AGG 0.437358 3_3:+80893602 Msa0476960:CDS
AACAAAATGAACAATGGTAC+TGG 0.437938 3_3:+80894759 Msa0476960:CDS
GCTAGCAGTGTGGCGTTGCC+GGG 0.438220 3_3:+80894522 Msa0476960:CDS
CGGCTGTCCATTTGATGGAA+AGG 0.439223 3_3:-80894298 None:intergenic
TGAGGCTCATTCAAGTTCTT+GGG 0.442141 3_3:+80893321 Msa0476960:CDS
AGCGGATTGGGAACTGGCAT+TGG 0.444215 3_3:+80894365 Msa0476960:CDS
TACAATTGGTGTAAAGAAAG+TGG 0.445885 3_3:+80893904 Msa0476960:CDS
AGGCTTCGAGTTCAATGAAA+AGG 0.447822 3_3:+80899911 Msa0476960:CDS
GGCTCAGGCTCAGGCTCTGG+TGG 0.448716 3_3:-80894141 None:intergenic
ACCTCCCTCCTATGTGCAAA+TGG 0.449011 3_3:+80894644 Msa0476960:CDS
CACGCTGGAATCGTCATGTA+AGG 0.450062 3_3:+80900371 Msa0476960:three_prime_UTR
TGGAGGAGTTTGTGAGGGAT+AGG 0.450640 3_3:+80893989 Msa0476960:CDS
GGCACTCTTTGCTGGTGCAC+CGG 0.450777 3_3:+80894245 Msa0476960:CDS
TACATGCCATTCAACAATAA+GGG 0.450802 3_3:-80894444 None:intergenic
GAGTATAATTCTAGAAACAT+AGG 0.453456 3_3:+80900332 Msa0476960:three_prime_UTR
TTGATATTGTTTCTGGAACC+AGG 0.454779 3_3:+80899536 Msa0476960:CDS
GAGGTAAGGGGACAAGGGAT+TGG 0.456272 3_3:+80900275 Msa0476960:three_prime_UTR
AATGGTACTGGATACTATGC+TGG 0.457007 3_3:+80894771 Msa0476960:CDS
TGGGAAAGCGGATTGGGAAC+TGG 0.460427 3_3:+80894359 Msa0476960:CDS
ATGTGTTCCAAGCACGATAG+TGG 0.463122 3_3:+80899727 Msa0476960:CDS
AGACAGCCAGCAATTTATCT+AGG 0.466153 3_3:+80894391 Msa0476960:CDS
GTGAGCACTTCCCAACTTAG+TGG 0.466638 3_3:+80894492 Msa0476960:CDS
GGCTTGTAGGCCAACTGGGT+TGG 0.467428 3_3:+80893690 Msa0476960:CDS
AGCACTCCCTCCACTAAGTT+GGG 0.468854 3_3:-80894502 None:intergenic
CTGAACCTGGGAAAGCGGAT+TGG 0.473866 3_3:+80894352 Msa0476960:CDS
AGCTCTAGTCGTAACCTTGA+TGG 0.474185 3_3:-80900535 None:intergenic
TCTTGGCTTGTAGGCCAACT+GGG 0.474549 3_3:+80893686 Msa0476960:CDS
GACGAGTCACGACGAAGATC+CGG 0.474753 3_3:+80893060 Msa0476960:CDS
TTAGAGGGGAAGGTGGGATG+AGG 0.476333 3_3:+80893524 Msa0476960:CDS
GTGGGGATGAGAGGTTCAGT+GGG 0.476909 3_3:+80893446 Msa0476960:CDS
TAGCACTCCCTCCACTAAGT+TGG 0.477701 3_3:-80894503 None:intergenic
CCATTTGCATTATTATTAGC+CGG 0.478356 3_3:-80894264 None:intergenic
CAGAAGAATGCTTTAGGTGG+TGG 0.478692 3_3:+80894414 Msa0476960:CDS
TGTTACTGTGACTCCTTTGA+GGG 0.482095 3_3:+80893603 Msa0476960:CDS
GACAATTTAGAGGGGAAGGT+GGG 0.482887 3_3:+80893518 Msa0476960:CDS
GTTATGATACAAAAGGTAAA+GGG 0.483001 3_3:-80900560 None:intergenic
GAGGTCCCATTCCATGAACT+GGG 0.483754 3_3:-80894818 None:intergenic
CATTTCGGCCATTTGCACAT+AGG 0.483880 3_3:-80894652 None:intergenic
TGTTATGATACAAAAGGTAA+AGG 0.484107 3_3:-80900561 None:intergenic
ACCGCAGTTTACGGAGGACT+TGG 0.485521 3_3:+80894167 Msa0476960:CDS
CATATAGACCTTTCCTCTGA+GGG 0.489228 3_3:-80900478 None:intergenic
TAGTAAGTTGTTGGAGACAC+TGG 0.489566 3_3:+80893969 Msa0476960:CDS
CTGAAAATGGTGACTCACGC+TGG 0.489758 3_3:+80900356 Msa0476960:three_prime_UTR
GGAGTATGGTAATACCCGTT+TGG 0.490570 3_3:-80894840 None:intergenic
AAAAGCGATTGGAGCGGTGA+AGG 0.491311 3_3:+80892964 Msa0476960:CDS
GTGAAGGATCAGACGAGTAT+TGG 0.495455 3_3:+80892980 Msa0476960:CDS
ATGGTTAAGTGCTTGAACTA+TGG 0.496161 3_3:-80899500 None:intergenic
AAGCACGATAGTGGACGAAT+AGG 0.496528 3_3:+80899736 Msa0476960:CDS
AGTTCCCAATCCGCTTTCCC+AGG 0.496887 3_3:-80894357 None:intergenic
CAACATGGCGCCGGAATTGG+AGG 0.497407 3_3:+80893021 Msa0476960:CDS
GGTGATGTGAATGAAGTGTC+GGG 0.503105 3_3:+80893562 Msa0476960:CDS
GAAAGAGGAAGCTCCTAAGC+TGG 0.504819 3_3:+80894038 Msa0476960:CDS
AAAAGGAGGTAAGGGGACAA+GGG 0.508171 3_3:+80900270 Msa0476960:three_prime_UTR
GGACAATTTAGAGGGGAAGG+TGG 0.509390 3_3:+80893517 Msa0476960:CDS
ACGCGTCTTCCCCAATCGCT+TGG 0.510059 3_3:-80893164 None:intergenic
GCCGAAGAACTTAATAAACT+AGG 0.510408 3_3:+80899891 Msa0476960:CDS
TCTTTGAACTTCCGGATACT+CGG 0.511861 3_3:-80893941 None:intergenic
CCTCCATACTCATACTCATT+CGG 0.512264 3_3:-80893493 None:intergenic
CTGGCTGCACAGATCCATCT+GGG 0.512279 3_3:-80894584 None:intergenic
AGCACAATCCGAAAAGCGAT+TGG 0.514162 3_3:+80892953 Msa0476960:CDS
GGGGTATAATTCTCAGGTGC+AGG 0.514218 3_3:-80894111 None:intergenic
ATGGAATGGGACCTCCAAAC+GGG 0.516808 3_3:+80894826 Msa0476960:CDS
TTAGCTCTCCCAGCCCCAGA+TGG 0.517956 3_3:+80894570 Msa0476960:CDS
TTCGGCCATTTGCACATAGG+AGG 0.519643 3_3:-80894649 None:intergenic
AGTGTGGCGTTGCCGGGACC+GGG 0.520277 3_3:+80894528 Msa0476960:CDS
ATGTTGTTTGATAGAAAAGC+TGG 0.520386 3_3:+80893400 Msa0476960:CDS
AGTAGCTGAGCTTGATCAAA+GGG 0.520659 3_3:+80899280 Msa0476960:CDS
TTGGTGTAAAGAAAGTGGTT+TGG 0.520726 3_3:+80893909 Msa0476960:CDS
ATGTTCAATGATGCGGCGAA+CGG 0.523167 3_3:-80894618 None:intergenic
TATTCGTCCACTATCGTGCT+TGG 0.524062 3_3:-80899734 None:intergenic
GGTGGCGGGGTATAATTCTC+AGG 0.525615 3_3:-80894117 None:intergenic
AATGTTTGTAACGTACTGTA+TGG 0.525630 3_3:-80900157 None:intergenic
ATGCTACGAGGAGAGGGACT+AGG 0.526966 3_3:+80893272 Msa0476960:CDS
ATCTTCCCGAAAATCCTCTC+CGG 0.528840 3_3:-80893634 None:intergenic
TCCTTTGAGGGATATGAAGC+CGG 0.529821 3_3:+80893615 Msa0476960:CDS
GGAAGTACAAGAGGAGGAGC+CGG 0.530728 3_3:+80894059 Msa0476960:CDS
AAACCCCTGCAGCTGAACCT+GGG 0.532015 3_3:+80894340 Msa0476960:CDS
TCAGGATATGAACGAGATCA+AGG 0.532360 3_3:+80894083 Msa0476960:CDS
GGAGGAGTTTGTGAGGGATA+GGG 0.532775 3_3:+80893990 Msa0476960:CDS
AGCTGTGGCATCAGTATGCA+AGG 0.533057 3_3:+80894709 Msa0476960:CDS
CGGAGGACTTGGTGAATCTG+AGG 0.533271 3_3:+80894178 Msa0476960:CDS
CTTATATACTTCTCACTCGC+CGG 0.534004 3_3:-80893079 None:intergenic
AGAAGAATGCTTTAGGTGGT+GGG 0.534327 3_3:+80894415 Msa0476960:CDS
TGCAGCTGAACCTGGGAAAG+CGG 0.538233 3_3:+80894347 Msa0476960:CDS
AGTATAATTCTAGAAACATA+GGG 0.539866 3_3:+80900333 Msa0476960:three_prime_UTR
GGCTTCGAGTTCAATGAAAA+GGG 0.539977 3_3:+80899912 Msa0476960:CDS
AGGCTCTGGTGGAGGTGGCG+GGG 0.540099 3_3:-80894130 None:intergenic
AAAGAGTCCAGAGAGGAAAG+AGG 0.540156 3_3:+80894023 Msa0476960:CDS
GATAGAAAAGCTGGTAGTGT+TGG 0.540496 3_3:+80893409 Msa0476960:CDS
AGGAATTTCCCTCAGAGGAA+AGG 0.541746 3_3:+80900470 Msa0476960:three_prime_UTR
CATGGCGCCGGAATTGGAGG+TGG 0.543914 3_3:+80893024 Msa0476960:CDS
GGGGCTGGGAGAGCTAAAAC+AGG 0.544685 3_3:-80894564 None:intergenic
TTTCCCAGGTTCAGCTGCAG+GGG 0.545857 3_3:-80894343 None:intergenic
AGATCTGCAGTGAATTGAAA+GGG 0.546340 3_3:+80900223 Msa0476960:three_prime_UTR
GGTGGACAATTTAGAGGGGA+AGG 0.546935 3_3:+80893514 Msa0476960:CDS
GAAAGGTCTATATGTAAATG+AGG 0.550021 3_3:+80900487 Msa0476960:three_prime_UTR
ATGGTACTGGATACTATGCT+GGG 0.551613 3_3:+80894772 Msa0476960:CDS
ATGGAGGTGGACAATTTAGA+GGG 0.551974 3_3:+80893509 Msa0476960:CDS
ATGAGGAAGACGAGGTCGTA+TGG 0.552855 3_3:+80893541 Msa0476960:CDS
GTTCATCGACTGATGAATGA+TGG 0.553308 3_3:+80893220 Msa0476960:CDS
TAGATCTGCAGTGAATTGAA+AGG 0.554148 3_3:+80900222 Msa0476960:three_prime_UTR
TGATATTGTTTCTGGAACCA+GGG 0.555585 3_3:+80899537 Msa0476960:CDS
TGGCATCAGTATGCAAGGGA+TGG 0.556853 3_3:+80894714 Msa0476960:CDS
CTTTCCATCAAATGGACAGC+CGG 0.557840 3_3:+80894299 Msa0476960:CDS
TCAGGGTAATAGATTTGCGT+TGG 0.558037 3_3:+80894224 Msa0476960:CDS
TTGTGAGGGATAGGGCTAAG+AGG 0.559656 3_3:+80893998 Msa0476960:CDS
TATCAGACAGCAAACATGCT+TGG 0.560324 3_3:+80900084 Msa0476960:three_prime_UTR
TCCTAAGCTGGAAGTACAAG+AGG 0.562685 3_3:+80894050 Msa0476960:CDS
CAGCTGTGTCCAAGCGATTG+GGG 0.563623 3_3:+80893155 Msa0476960:CDS
GGTGGGGATGAGAGGTTCAG+TGG 0.563806 3_3:+80893445 Msa0476960:CDS
GAAAGATAAAAGGAGGTAAG+GGG 0.564736 3_3:+80900263 Msa0476960:three_prime_UTR
CATGGAATGGGACCTCCAAA+CGG 0.565171 3_3:+80894825 Msa0476960:CDS
AAGTAGCTGAGCTTGATCAA+AGG 0.565757 3_3:+80899279 Msa0476960:CDS
TTCGGTTGAGAGACGGAGAG+AGG 0.567485 3_3:-80900419 None:intergenic
TAATAATGCAAATGGATCGT+GGG 0.567598 3_3:+80894272 Msa0476960:CDS
AGAAAAGCTGGTAGTGTTGG+TGG 0.569447 3_3:+80893412 Msa0476960:CDS
TATAGGGTTACAAGAGAGCA+AGG 0.574650 3_3:+80899224 Msa0476960:intron
AATGAGTATGAGTATGGAGG+TGG 0.576242 3_3:+80893496 Msa0476960:CDS
AACTACTTAACTAGCGAGGA+AGG 0.576255 3_3:+80899454 Msa0476960:CDS
AGCACTTGCATAAGCATCAA+AGG 0.577337 3_3:-80893851 None:intergenic
TCGGCCATTTGCACATAGGA+GGG 0.577744 3_3:-80894648 None:intergenic
AGTAGCGAGCAACATGGCGC+CGG 0.578249 3_3:+80893012 Msa0476960:CDS
ATTTGCACATAGGAGGGAGG+TGG 0.579870 3_3:-80894642 None:intergenic
TTTGATTGCATTGTATCCGT+TGG 0.580416 3_3:+80893732 Msa0476960:CDS
AGCCGGAAGTAACTTCAGCT+TGG 0.581334 3_3:+80894316 Msa0476960:CDS
ATCAGGGTTCGGTTGAGAGA+CGG 0.582724 3_3:-80900426 None:intergenic
TACTGAGGAATTTCCCTCAG+AGG 0.583254 3_3:+80900465 Msa0476960:three_prime_UTR
GTATGGTAATACCCGTTTGG+AGG 0.584432 3_3:-80894837 None:intergenic
TTATGTATGCTACGAGGAGA+GGG 0.585734 3_3:+80893266 Msa0476960:CDS
TATGCAAGGGATGGGATGCA+AGG 0.585796 3_3:+80894723 Msa0476960:CDS
ATAATAATGCAAATGGATCG+TGG 0.587702 3_3:+80894271 Msa0476960:CDS
GTAATGTGTTATGATACAAA+AGG 0.588479 3_3:-80900567 None:intergenic
ATTATGTATGCTACGAGGAG+AGG 0.593045 3_3:+80893265 Msa0476960:CDS
TTGTTCTTAGCCAACCCAGT+TGG 0.593548 3_3:-80893700 None:intergenic
GGATAAAGAAAGATAAAAGG+AGG 0.594336 3_3:+80900256 Msa0476960:three_prime_UTR
TTGAATGGCATGTATGATCA+AGG 0.598862 3_3:+80894453 Msa0476960:CDS
GGAAGATGAGTCATTTGCAG+AGG 0.598868 3_3:+80893650 Msa0476960:CDS
GCTTGACAAATTCTTTGACA+TGG 0.599304 3_3:+80893807 Msa0476960:CDS
ATGCTTTGTATCTCGATCAG+AGG 0.601861 3_3:+80893368 Msa0476960:CDS
TCCGGCTTCATATCCCTCAA+AGG 0.602526 3_3:-80893616 None:intergenic
AACTTGATGTCTTACTCGCG+TGG 0.604269 3_3:+80893112 Msa0476960:CDS
ACATATAGACCTTTCCTCTG+AGG 0.605452 3_3:-80900479 None:intergenic
TGGTGATGTGAATGAAGTGT+CGG 0.612307 3_3:+80893561 Msa0476960:CDS
AATTGAAAGGGACAGTTCTG+AGG 0.612563 3_3:+80900235 Msa0476960:three_prime_UTR
TCGGTTGAGAGACGGAGAGA+GGG 0.618844 3_3:-80900418 None:intergenic
GACACTGGAGGAGTTTGTGA+GGG 0.619044 3_3:+80893984 Msa0476960:CDS
GCAGTCACTGCAGACGATCA+GGG 0.621548 3_3:+80894207 Msa0476960:CDS
TAAGCTGGAAGTACAAGAGG+AGG 0.625162 3_3:+80894053 Msa0476960:CDS
AAAGCTGGTAGTGTTGGTGG+TGG 0.625469 3_3:+80893415 Msa0476960:CDS
TGGAGGTGGACAATTTAGAG+GGG 0.626675 3_3:+80893510 Msa0476960:CDS
TTGTGCATGAGCAGCAGCTG+TGG 0.626683 3_3:+80894694 Msa0476960:CDS
AGACACTGGAGGAGTTTGTG+AGG 0.628043 3_3:+80893983 Msa0476960:CDS
GGTCCCATTCCATGAACTGG+GGG 0.628379 3_3:-80894816 None:intergenic
AGGTGGAATGTTCAATGATG+CGG 0.628537 3_3:-80894625 None:intergenic
ACGCTGGAATCGTCATGTAA+GGG 0.629001 3_3:+80900372 Msa0476960:three_prime_UTR
AGCACTTCCCAACTTAGTGG+AGG 0.634431 3_3:+80894495 Msa0476960:CDS
GCCATTTGCACATAGGAGGG+AGG 0.634464 3_3:-80894645 None:intergenic
TGGTACTGGATACTATGCTG+GGG 0.635659 3_3:+80894773 Msa0476960:CDS
TAGCTACAAAGAAGATGTAA+CGG 0.635905 3_3:+80900123 Msa0476960:three_prime_UTR
TTAGTTAGAAATGCTCCTTG+TGG 0.636876 3_3:-80899953 None:intergenic
GGCATCAGTATGCAAGGGAT+GGG 0.637136 3_3:+80894715 Msa0476960:CDS
ACCAAGTCCTCCGTAAACTG+CGG 0.641216 3_3:-80894168 None:intergenic
GGAGGACTTGGTGAATCTGA+GGG 0.641575 3_3:+80894179 Msa0476960:CDS
CCCGTTATAGCAAATTGATG+TGG 0.642807 3_3:+80899993 Msa0476960:three_prime_UTR
TAAACAGATTGATGAACTTG+TGG 0.645164 3_3:+80893876 Msa0476960:CDS
AGCTTGAACAAAATGAACAA+TGG 0.645990 3_3:+80894753 Msa0476960:CDS
CCATACTCATACTCATTCGG+TGG 0.649853 3_3:-80893490 None:intergenic
TGAAAACTCTCCTTAACCAA+CGG 0.650974 3_3:-80893748 None:intergenic
GAGAGCTAAAACAGGTGTTG+TGG 0.651335 3_3:-80894556 None:intergenic
GCTGTATGCTGATATATGCG+AGG 0.654854 3_3:+80893771 Msa0476960:CDS
AGCGAAAGTAGCGAGCAACA+TGG 0.657386 3_3:+80893006 Msa0476960:CDS
TGAGGGATATGAAGCCGGAG+AGG 0.659064 3_3:+80893620 Msa0476960:CDS
CCGAATGAGTATGAGTATGG+AGG 0.662053 3_3:+80893493 Msa0476960:CDS
GCACTTCCCAACTTAGTGGA+GGG 0.664190 3_3:+80894496 Msa0476960:CDS
AACAAAATTTGAGTTCCACA+AGG 0.668640 3_3:+80899938 Msa0476960:CDS
TAAGTTGTTGGAGACACTGG+AGG 0.669834 3_3:+80893972 Msa0476960:CDS
GCTGTGGCATCAGTATGCAA+GGG 0.669933 3_3:+80894710 Msa0476960:CDS
AGGCAGAAGAATGCTTTAGG+TGG 0.677279 3_3:+80894411 Msa0476960:CDS
TGGCATGTATGATCAAGGAA+TGG 0.678938 3_3:+80894458 Msa0476960:CDS
TTGAACTTCCGGATACTCGG+AGG 0.680206 3_3:-80893938 None:intergenic
GGACTTGGTGAATCTGAGGG+AGG 0.680416 3_3:+80894182 Msa0476960:CDS
TGGAGGGAGTGCTAGCAGTG+TGG 0.687452 3_3:+80894512 Msa0476960:CDS
AGGTCCCATTCCATGAACTG+GGG 0.690448 3_3:-80894817 None:intergenic
GGTACTGGATACTATGCTGG+GGG 0.690788 3_3:+80894774 Msa0476960:CDS
GGAGTATCCTGATTGTGTGA+AGG 0.692728 3_3:+80893828 Msa0476960:CDS
GCACAACTACTTAACTAGCG+AGG 0.693637 3_3:+80899450 Msa0476960:CDS
GCCAAAACCGCAGTTTACGG+AGG 0.695554 3_3:+80894161 Msa0476960:CDS
GTGATGTGAATGAAGTGTCG+GGG 0.703090 3_3:+80893563 Msa0476960:CDS
TGGCTGCACAGATCCATCTG+GGG 0.707777 3_3:-80894583 None:intergenic
AATCCGAAAAGCGATTGGAG+CGG 0.709364 3_3:+80892958 Msa0476960:CDS
AAGGTGGGATGAGGAAGACG+AGG 0.712639 3_3:+80893533 Msa0476960:CDS
AGAGGCCAAAGAGTCCAGAG+AGG 0.718357 3_3:+80894016 Msa0476960:CDS
TGTATGATCAAGGAATGGTG+AGG 0.740576 3_3:+80894463 Msa0476960:CDS
AAGAGATTATGTATGCTACG+AGG 0.775372 3_3:+80893260 Msa0476960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr3_3:80897817-80897836 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr3_3:80897817-80897836 None:intergenic 0.0%
!!! GTTAAAAAATTCTATTTTTT+TGG - chr3_3:80897416-80897435 None:intergenic 10.0%
!!! ACATTTTAATTAGATTAATT+AGG + chr3_3:80897781-80897800 Msa0476960:intron 10.0%
!!! CATTTTAATTAGATTAATTA+GGG + chr3_3:80897782-80897801 Msa0476960:intron 10.0%
!!! ATTTTAATTAGATTAATTAG+GGG + chr3_3:80897783-80897802 Msa0476960:intron 10.0%
!!! GTTAAAAAATTCTATTTTTT+TGG - chr3_3:80897416-80897435 None:intergenic 10.0%
!!! ACATTTTAATTAGATTAATT+AGG + chr3_3:80897781-80897800 Msa0476960:intron 10.0%
!!! CATTTTAATTAGATTAATTA+GGG + chr3_3:80897782-80897801 Msa0476960:intron 10.0%
!!! ATTTTAATTAGATTAATTAG+GGG + chr3_3:80897783-80897802 Msa0476960:intron 10.0%
!! AAATATTTATTGAGACAAAT+CGG - chr3_3:80895786-80895805 None:intergenic 15.0%
!! TCATAATTCAAATAAAATTG+AGG - chr3_3:80895970-80895989 None:intergenic 15.0%
!! AATAGTTGTTTAAATACAAA+AGG + chr3_3:80896886-80896905 Msa0476960:intron 15.0%
!! CAAAGCTAATAAATAATATA+GGG - chr3_3:80897137-80897156 None:intergenic 15.0%
!! TCAAAGCTAATAAATAATAT+AGG - chr3_3:80897138-80897157 None:intergenic 15.0%
!!! TTATTTTTTTGTTAACTCTT+CGG - chr3_3:80897215-80897234 None:intergenic 15.0%
!! AAGAGTTAACAAAAAAATAA+GGG + chr3_3:80897215-80897234 Msa0476960:intron 15.0%
!!! TAGTGATTGAAAATTTTATT+GGG - chr3_3:80897317-80897336 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG - chr3_3:80897467-80897486 None:intergenic 15.0%
!!! AAGTAAAGATGAAAATTTTT+AGG + chr3_3:80897620-80897639 Msa0476960:intron 15.0%
!! TAAAAAATATGAATTCTTCA+TGG + chr3_3:80897655-80897674 Msa0476960:intron 15.0%
!!! TTTTAATTAGATTAATTAGG+GGG + chr3_3:80897784-80897803 Msa0476960:intron 15.0%
!! TATATATATATATATGGTCA+TGG - chr3_3:80897811-80897830 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG - chr3_3:80897467-80897486 None:intergenic 15.0%
!!! AAGTAAAGATGAAAATTTTT+AGG + chr3_3:80897620-80897639 Msa0476960:intron 15.0%
!! TAAAAAATATGAATTCTTCA+TGG + chr3_3:80897655-80897674 Msa0476960:intron 15.0%
!!! TTTTAATTAGATTAATTAGG+GGG + chr3_3:80897784-80897803 Msa0476960:intron 15.0%
!! TATATATATATATATGGTCA+TGG - chr3_3:80897811-80897830 None:intergenic 15.0%
!! ATTCAAATTTAACATGTAAA+AGG - chr3_3:80898714-80898733 None:intergenic 15.0%
!! TAAATTTGAATTTCAAACTT+TGG + chr3_3:80898723-80898742 Msa0476960:intron 15.0%
!! TAAAAATGAACAGAAAAAAT+AGG - chr3_3:80898986-80899005 None:intergenic 15.0%
!!! CTTTTTATCAAATTCAATAA+GGG + chr3_3:80899107-80899126 Msa0476960:intron 15.0%
!!! ATTTTTTTACTATGACATAG+TGG + chr3_3:80894918-80894937 Msa0476960:intron 20.0%
!!! CATATTTTCATTTCATCTTA+TGG + chr3_3:80895210-80895229 Msa0476960:intron 20.0%
!! ACATGTATTTATGAATATCA+CGG - chr3_3:80895677-80895696 None:intergenic 20.0%
!! ATAAAATTGAGGTTCAAAAT+AGG - chr3_3:80895959-80895978 None:intergenic 20.0%
!! ACTGTTAATATACATTTCTT+AGG + chr3_3:80896198-80896217 Msa0476960:intron 20.0%
!!! AACCAAACAAATATTAGTTT+AGG - chr3_3:80896924-80896943 None:intergenic 20.0%
!! TAAACTAATATTTGTTTGGT+TGG + chr3_3:80896923-80896942 Msa0476960:intron 20.0%
!! CAAAAATTGTCAAAATTGTT+AGG - chr3_3:80897065-80897084 None:intergenic 20.0%
!! GAAGAGTTAACAAAAAAATA+AGG + chr3_3:80897214-80897233 Msa0476960:intron 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG + chr3_3:80897231-80897250 Msa0476960:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr3_3:80897258-80897277 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr3_3:80897259-80897278 None:intergenic 20.0%
!! AAGTTGAAGAAAATGTTATA+GGG - chr3_3:80897289-80897308 None:intergenic 20.0%
!! AAAGTTGAAGAAAATGTTAT+AGG - chr3_3:80897290-80897309 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+TGG - chr3_3:80897318-80897337 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr3_3:80897321-80897340 Msa0476960:intron 20.0%
!!! TAAAGATGAAAATTTTTAGG+AGG + chr3_3:80897623-80897642 Msa0476960:intron 20.0%
!! ACTATGTTACTAGATTAATT+GGG - chr3_3:80897726-80897745 None:intergenic 20.0%
!! TACTATGTTACTAGATTAAT+TGG - chr3_3:80897727-80897746 None:intergenic 20.0%
!!! TGAAAAACTCTAAGAAATTT+TGG + chr3_3:80897505-80897524 Msa0476960:intron 20.0%
!!! GAAAAACTCTAAGAAATTTT+GGG + chr3_3:80897506-80897525 Msa0476960:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr3_3:80897591-80897610 Msa0476960:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr3_3:80897592-80897611 Msa0476960:intron 20.0%
!!! TAAAGATGAAAATTTTTAGG+AGG + chr3_3:80897623-80897642 Msa0476960:intron 20.0%
!! ACTATGTTACTAGATTAATT+GGG - chr3_3:80897726-80897745 None:intergenic 20.0%
!! TACTATGTTACTAGATTAAT+TGG - chr3_3:80897727-80897746 None:intergenic 20.0%
!!! TAAAAGGAGGAAATATTTTA+GGG - chr3_3:80898698-80898717 None:intergenic 20.0%
!! AGGAATTAATTATCTAGTAT+GGG - chr3_3:80898856-80898875 None:intergenic 20.0%
!! AAGGAATTAATTATCTAGTA+TGG - chr3_3:80898857-80898876 None:intergenic 20.0%
!! AATAAGTGAATAAAAACCTA+TGG - chr3_3:80898961-80898980 None:intergenic 20.0%
!! CCTTATTGAATTTGATAAAA+AGG - chr3_3:80899109-80899128 None:intergenic 20.0%
!!! CCTTTTTATCAAATTCAATA+AGG + chr3_3:80899106-80899125 Msa0476960:intron 20.0%
!! TAATATTGATCGTCAAATTA+TGG + chr3_3:80899406-80899425 Msa0476960:intron 20.0%
!!! CTATTTTAATTTACTCAATC+CGG - chr3_3:80899634-80899653 None:intergenic 20.0%
!!! CTTTTGAATTTCTAATTATC+AGG + chr3_3:80899657-80899676 Msa0476960:intron 20.0%
!! TTGAACAATATCATATAATC+AGG - chr3_3:80900019-80900038 None:intergenic 20.0%
!! ATTATACTCAAAGAAAAATG+AGG - chr3_3:80900321-80900340 None:intergenic 20.0%
!!! AGTATAATTCTAGAAACATA+GGG + chr3_3:80900333-80900352 Msa0476960:three_prime_UTR 20.0%
!!! TTTTGTATCATAACACATTA+CGG + chr3_3:80900569-80900588 Msa0476960:three_prime_UTR 20.0%
!!! AAATTAAACAAATGAGTTGA+TGG + chr3_3:80900641-80900660 Msa0476960:three_prime_UTR 20.0%
! AAGAATTACTAGTAAGTTGT+TGG + chr3_3:80893960-80893979 Msa0476960:CDS 25.0%
! TGAAACAAACTATAGATATG+TGG - chr3_3:80894895-80894914 None:intergenic 25.0%
!!! ATTTCTTGTTTGGTTTTTGA+TGG + chr3_3:80895026-80895045 Msa0476960:intron 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr3_3:80895412-80895431 Msa0476960:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3_3:80895425-80895444 Msa0476960:intron 25.0%
! TATTGTGTAAGAAAATCTTG+TGG + chr3_3:80895603-80895622 Msa0476960:intron 25.0%
! AAAATATTAATGATGCGACA+TGG + chr3_3:80895848-80895867 Msa0476960:intron 25.0%
! GATTTAAAAATGGATGTAGT+AGG + chr3_3:80895870-80895889 Msa0476960:intron 25.0%
!!! TGATTTGTTCAATCAAGAAA+TGG - chr3_3:80896266-80896285 None:intergenic 25.0%
!!! GGGTTTTTTAACATTTTAAC+AGG - chr3_3:80896383-80896402 None:intergenic 25.0%
!! ATGTTATTTGCCATCTAATT+AGG - chr3_3:80896576-80896595 None:intergenic 25.0%
! TTCAATATTCAATCCAGATT+AGG - chr3_3:80896638-80896657 None:intergenic 25.0%
!!! CTATTGTTTTTCGATATGTT+TGG + chr3_3:80896659-80896678 Msa0476960:intron 25.0%
! AGCCTAAACTAATATTTGTT+TGG + chr3_3:80896919-80896938 Msa0476960:intron 25.0%
!! AATATTTGTTTGGTTGGTTA+AGG + chr3_3:80896929-80896948 Msa0476960:intron 25.0%
! AATTGTCAAAATTGTTAGGT+CGG - chr3_3:80897061-80897080 None:intergenic 25.0%
!! TTTTGACAATTTTTGCCAAT+TGG + chr3_3:80897070-80897089 Msa0476960:intron 25.0%
! AACTATTACTGTGATTAACA+GGG - chr3_3:80898446-80898465 None:intergenic 25.0%
! CAATTAAATCATCACCAAAA+AGG - chr3_3:80898478-80898497 None:intergenic 25.0%
! ACTTACTCTTAAAGCTTATT+AGG + chr3_3:80898607-80898626 Msa0476960:intron 25.0%
! ATTAATGACATGGATTTAGA+GGG - chr3_3:80898660-80898679 None:intergenic 25.0%
! AATTAATGACATGGATTTAG+AGG - chr3_3:80898661-80898680 None:intergenic 25.0%
! TTGATTAGCAATTAATGACA+TGG - chr3_3:80898670-80898689 None:intergenic 25.0%
!! GTAAAAGGAGGAAATATTTT+AGG - chr3_3:80898699-80898718 None:intergenic 25.0%
! CAAATTTAACATGTAAAAGG+AGG - chr3_3:80898711-80898730 None:intergenic 25.0%
! AATAAATTCATGGGAAAATG+AGG - chr3_3:80898800-80898819 None:intergenic 25.0%
! TAAGAGGCAAATAAATTCAT+GGG - chr3_3:80898809-80898828 None:intergenic 25.0%
! ATAAGAGGCAAATAAATTCA+TGG - chr3_3:80898810-80898829 None:intergenic 25.0%
! TAATTAATTCCTTTGCCATA+TGG + chr3_3:80898864-80898883 Msa0476960:intron 25.0%
! TCAATAAGGGTTCTATTATA+AGG + chr3_3:80899120-80899139 Msa0476960:intron 25.0%
! TTTAGTTGTGTGTGATTTAT+AGG + chr3_3:80899207-80899226 Msa0476960:intron 25.0%
! TTAGTTGTGTGTGATTTATA+GGG + chr3_3:80899208-80899227 Msa0476960:intron 25.0%
! AAGTAATCCTTATTGCAAAA+GGG - chr3_3:80899377-80899396 None:intergenic 25.0%
!! AACAATATCAACTCCATTTT+TGG - chr3_3:80899527-80899546 None:intergenic 25.0%
!!! TAGAAATTAAAAGAGCATCA+AGG - chr3_3:80899608-80899627 None:intergenic 25.0%
! GAATTTCTAATTATCAGGTA+CGG + chr3_3:80899662-80899681 Msa0476960:intron 25.0%
!!! ATTGAAGACATTGACTTAAT+TGG + chr3_3:80900177-80900196 Msa0476960:three_prime_UTR 25.0%
! TGAGGATAAAGAAAGATAAA+AGG + chr3_3:80900253-80900272 Msa0476960:three_prime_UTR 25.0%
!! GAGTATAATTCTAGAAACAT+AGG + chr3_3:80900332-80900351 Msa0476960:three_prime_UTR 25.0%
!! TTTTCTTTTTTCTTCCATCA+AGG + chr3_3:80900521-80900540 Msa0476960:three_prime_UTR 25.0%
! GTTATGATACAAAAGGTAAA+GGG - chr3_3:80900563-80900582 None:intergenic 25.0%
! TGTTATGATACAAAAGGTAA+AGG - chr3_3:80900564-80900583 None:intergenic 25.0%
! GTAATGTGTTATGATACAAA+AGG - chr3_3:80900570-80900589 None:intergenic 25.0%
ATAATCTCTTCCTGGAAAAT+CGG - chr3_3:80893250-80893269 None:intergenic 30.0%
!! TATGTCTGATTTTAGAGATG+AGG + chr3_3:80893303-80893322 Msa0476960:CDS 30.0%
! ATGTTGTTTGATAGAAAAGC+TGG + chr3_3:80893400-80893419 Msa0476960:CDS 30.0%
TAAACAGATTGATGAACTTG+TGG + chr3_3:80893876-80893895 Msa0476960:CDS 30.0%
TACAATTGGTGTAAAGAAAG+TGG + chr3_3:80893904-80893923 Msa0476960:CDS 30.0%
CTAGTAATTCTTTGAACTTC+CGG - chr3_3:80893952-80893971 None:intergenic 30.0%
CCATTTGCATTATTATTAGC+CGG - chr3_3:80894267-80894286 None:intergenic 30.0%
ATAATAATGCAAATGGATCG+TGG + chr3_3:80894271-80894290 Msa0476960:CDS 30.0%
TAATAATGCAAATGGATCGT+GGG + chr3_3:80894272-80894291 Msa0476960:CDS 30.0%
TACATGCCATTCAACAATAA+GGG - chr3_3:80894447-80894466 None:intergenic 30.0%
ATACATGCCATTCAACAATA+AGG - chr3_3:80894448-80894467 None:intergenic 30.0%
AGCTTGAACAAAATGAACAA+TGG + chr3_3:80894753-80894772 Msa0476960:CDS 30.0%
AACAAAATGAACAATGGTAC+TGG + chr3_3:80894759-80894778 Msa0476960:CDS 30.0%
AGATATGTGGCAAAAAGAAA+GGG - chr3_3:80894882-80894901 None:intergenic 30.0%
TAGATATGTGGCAAAAAGAA+AGG - chr3_3:80894883-80894902 None:intergenic 30.0%
!!! GTGGTTTCCTTTGTTTTAAA+TGG + chr3_3:80894937-80894956 Msa0476960:intron 30.0%
! GATGACACCATTTAAAACAA+AGG - chr3_3:80894947-80894966 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_3:80895387-80895406 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_3:80895438-80895457 Msa0476960:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_3:80895510-80895529 None:intergenic 30.0%
ATGCGACATGGATTTAAAAA+TGG + chr3_3:80895860-80895879 Msa0476960:intron 30.0%
AAATTGAGTTCAATCAAAGC+AGG + chr3_3:80895920-80895939 Msa0476960:intron 30.0%
TAGTTGCAAACTATAAACAC+TGG - chr3_3:80896065-80896084 None:intergenic 30.0%
TTTCAGTTACTTCTTACCTT+TGG + chr3_3:80896507-80896526 Msa0476960:intron 30.0%
! TGATAATGTAGTTGAGACTT+TGG - chr3_3:80896536-80896555 None:intergenic 30.0%
CATTATCATCAATCTTTCCT+TGG + chr3_3:80896548-80896567 Msa0476960:intron 30.0%
TTTGGTGAAAACTGTCAAAT+GGG + chr3_3:80896677-80896696 Msa0476960:intron 30.0%
! CTTTGACTTTATTTACCTTC+CGG + chr3_3:80897152-80897171 Msa0476960:intron 30.0%
TAGGGACTAAAATGAAAAGT+TGG - chr3_3:80897271-80897290 None:intergenic 30.0%
ACTATTACTGTGATTAACAG+GGG - chr3_3:80898445-80898464 None:intergenic 30.0%
CAACTATTACTGTGATTAAC+AGG - chr3_3:80898447-80898466 None:intergenic 30.0%
!! TAGTTGATATTCGTCCTTTT+TGG + chr3_3:80898461-80898480 Msa0476960:intron 30.0%
ATCTCCATTGTGCATATAAA+AGG + chr3_3:80898506-80898525 Msa0476960:intron 30.0%
GGATTTAGAGGGAAAAAATT+AGG - chr3_3:80898649-80898668 None:intergenic 30.0%
! GTATGGGAAATGTTTCTATT+GGG - chr3_3:80898840-80898859 None:intergenic 30.0%
! AGTATGGGAAATGTTTCTAT+TGG - chr3_3:80898841-80898860 None:intergenic 30.0%
AATGGAAAATGGTTTCCATA+TGG - chr3_3:80898882-80898901 None:intergenic 30.0%
TGATCATTGGAAATGGAAAA+TGG - chr3_3:80898893-80898912 None:intergenic 30.0%
GTGATTATGATCATTGGAAA+TGG - chr3_3:80898900-80898919 None:intergenic 30.0%
! AACCTATGGAAAGTATAATC+TGG - chr3_3:80898947-80898966 None:intergenic 30.0%
CAAGTAATCCTTATTGCAAA+AGG - chr3_3:80899378-80899397 None:intergenic 30.0%
!! CAATAAGGATTACTTGCTAT+TGG + chr3_3:80899382-80899401 Msa0476960:intron 30.0%
!! AATGGAGTTGATATTGTTTC+TGG + chr3_3:80899529-80899548 Msa0476960:CDS 30.0%
CAAAAATAGAATGTTTACCC+TGG - chr3_3:80899557-80899576 None:intergenic 30.0%
!!! GCTCTTTTAATTTCTAAGTC+CGG + chr3_3:80899612-80899631 Msa0476960:intron 30.0%
! GAGAAAACCTTTTTCCTATT+AGG - chr3_3:80899703-80899722 None:intergenic 30.0%
AAGTACCAACATATACTTGA+TGG - chr3_3:80899769-80899788 None:intergenic 30.0%
ATATGTTGGTACTTCATACA+TGG + chr3_3:80899775-80899794 Msa0476960:intron 30.0%
! GTATCAGGTGTATTTTATTG+TGG + chr3_3:80899855-80899874 Msa0476960:intron 30.0%
GCCTAGTTTATTAAGTTCTT+CGG - chr3_3:80899895-80899914 None:intergenic 30.0%
! TTGTGGAACTCAAATTTTGT+TGG - chr3_3:80899939-80899958 None:intergenic 30.0%
! AACAAAATTTGAGTTCCACA+AGG + chr3_3:80899938-80899957 Msa0476960:CDS 30.0%
!! AGGAGCATTTCTAACTAATT+TGG + chr3_3:80899958-80899977 Msa0476960:exon 30.0%
TAGCTACAAAGAAGATGTAA+CGG + chr3_3:80900123-80900142 Msa0476960:three_prime_UTR 30.0%
AATGTTTGTAACGTACTGTA+TGG - chr3_3:80900160-80900179 None:intergenic 30.0%
GGATAAAGAAAGATAAAAGG+AGG + chr3_3:80900256-80900275 Msa0476960:three_prime_UTR 30.0%
AAGAAAGATAAAAGGAGGTA+AGG + chr3_3:80900261-80900280 Msa0476960:three_prime_UTR 30.0%
AGAAAGATAAAAGGAGGTAA+GGG + chr3_3:80900262-80900281 Msa0476960:three_prime_UTR 30.0%
GAAAAGCCAAACAAAAATCA+GGG - chr3_3:80900445-80900464 None:intergenic 30.0%
AGAAAAGCCAAACAAAAATC+AGG - chr3_3:80900446-80900465 None:intergenic 30.0%
GAAAGGTCTATATGTAAATG+AGG + chr3_3:80900487-80900506 Msa0476960:three_prime_UTR 30.0%
TAGCATACATAATCTCTTCC+TGG - chr3_3:80893258-80893277 None:intergenic 35.0%
AAGAGATTATGTATGCTACG+AGG + chr3_3:80893260-80893279 Msa0476960:CDS 35.0%
GTGGGAGAGAAAATAATTTC+AGG + chr3_3:80893464-80893483 Msa0476960:CDS 35.0%
TTTGATTGCATTGTATCCGT+TGG + chr3_3:80893732-80893751 Msa0476960:CDS 35.0%
TGAAAACTCTCCTTAACCAA+CGG - chr3_3:80893751-80893770 None:intergenic 35.0%
GCTTGACAAATTCTTTGACA+TGG + chr3_3:80893807-80893826 Msa0476960:CDS 35.0%
! AACTTGTGGCGTTTTACAAT+TGG + chr3_3:80893890-80893909 Msa0476960:CDS 35.0%
TTGGTGTAAAGAAAGTGGTT+TGG + chr3_3:80893909-80893928 Msa0476960:CDS 35.0%
CCGGCTAATAATAATGCAAA+TGG + chr3_3:80894264-80894283 Msa0476960:CDS 35.0%
CTTGATCCCTTATTGTTGAA+TGG + chr3_3:80894438-80894457 Msa0476960:CDS 35.0%
TTGAATGGCATGTATGATCA+AGG + chr3_3:80894453-80894472 Msa0476960:CDS 35.0%
! TTGTTGCTTCTTCTCCATTT+CGG - chr3_3:80894670-80894689 None:intergenic 35.0%
! TCATTTTGTTCAAGCTAGAC+TGG - chr3_3:80894749-80894768 None:intergenic 35.0%
AGATCTGCATTTAGTACGAT+GGG + chr3_3:80894976-80894995 Msa0476960:intron 35.0%
!!! TCTTGTTTGGTTTTTGATGG+TGG + chr3_3:80895029-80895048 Msa0476960:intron 35.0%
!!! CTTGTTTGGTTTTTGATGGT+GGG + chr3_3:80895030-80895049 Msa0476960:intron 35.0%
TAGTTCTTGCATGAGACTAT+TGG + chr3_3:80895308-80895327 Msa0476960:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_3:80895505-80895524 Msa0476960:intron 35.0%
! GAAAATCTTGTGGTTCGTTT+TGG + chr3_3:80895613-80895632 Msa0476960:intron 35.0%
TCCCTCTTATTAGTAAGTCA+TGG + chr3_3:80896442-80896461 Msa0476960:intron 35.0%
CCCATGACTTACTAATAAGA+GGG - chr3_3:80896446-80896465 None:intergenic 35.0%
CCCTCTTATTAGTAAGTCAT+GGG + chr3_3:80896443-80896462 Msa0476960:intron 35.0%
TTCCTTGGATCCTAATTAGA+TGG + chr3_3:80896563-80896582 Msa0476960:intron 35.0%
! GTTTGGTGAAAACTGTCAAA+TGG + chr3_3:80896676-80896695 Msa0476960:intron 35.0%
ATAGTAGCTGTGTATGACAT+TGG + chr3_3:80896783-80896802 Msa0476960:intron 35.0%
TAGTAGCTGTGTATGACATT+GGG + chr3_3:80896784-80896803 Msa0476960:intron 35.0%
ATCTGAGAAGAATTCACAGT+TGG + chr3_3:80896831-80896850 Msa0476960:intron 35.0%
TCTGAGAAGAATTCACAGTT+GGG + chr3_3:80896832-80896851 Msa0476960:intron 35.0%
!! ACAGTTGGGTATTGAGTATA+AGG + chr3_3:80896846-80896865 Msa0476960:intron 35.0%
! CAATTTTTGCCAATTGGACT+AGG + chr3_3:80897076-80897095 Msa0476960:intron 35.0%
TGTTAACTCTTCGGTTCTTA+GGG - chr3_3:80897206-80897225 None:intergenic 35.0%
TTGTTAACTCTTCGGTTCTT+AGG - chr3_3:80897207-80897226 None:intergenic 35.0%
TCAATTGGTAGGAATATGCA+AGG - chr3_3:80897682-80897701 None:intergenic 35.0%
! GTCTCCTTTTATATGCACAA+TGG - chr3_3:80898513-80898532 None:intergenic 35.0%
AAATGGTTTCCATATGGCAA+AGG - chr3_3:80898876-80898895 None:intergenic 35.0%
TGCCAGATTATACTTTCCAT+AGG + chr3_3:80898942-80898961 Msa0476960:intron 35.0%
ACAATGAAGATCTCACAAGT+TGG + chr3_3:80899060-80899079 Msa0476960:intron 35.0%
! TCCTTTTCCCTTTTGCAATA+AGG + chr3_3:80899367-80899386 Msa0476960:intron 35.0%
TCCTTATTGCAAAAGGGAAA+AGG - chr3_3:80899371-80899390 None:intergenic 35.0%
ATCGTCAAATTATGGACTTC+AGG + chr3_3:80899414-80899433 Msa0476960:intron 35.0%
TCGTCAAATTATGGACTTCA+GGG + chr3_3:80899415-80899434 Msa0476960:intron 35.0%
TGCTTGAACTATGGTGATAA+GGG - chr3_3:80899494-80899513 None:intergenic 35.0%
ATGGTTAAGTGCTTGAACTA+TGG - chr3_3:80899503-80899522 None:intergenic 35.0%
!!! TATCAACTCCATTTTTGGCA+TGG - chr3_3:80899522-80899541 None:intergenic 35.0%
!! TTGATATTGTTTCTGGAACC+AGG + chr3_3:80899536-80899555 Msa0476960:CDS 35.0%
!! TGATATTGTTTCTGGAACCA+GGG + chr3_3:80899537-80899556 Msa0476960:CDS 35.0%
AGTCTCCATCAAGTATATGT+TGG + chr3_3:80899761-80899780 Msa0476960:intron 35.0%
GTACTTCATACATGGTAGTA+TGG + chr3_3:80899783-80899802 Msa0476960:intron 35.0%
TTGCTGTCTTAATTCGTATC+AGG + chr3_3:80899840-80899859 Msa0476960:intron 35.0%
GCCGAAGAACTTAATAAACT+AGG + chr3_3:80899891-80899910 Msa0476960:CDS 35.0%
TTAGTTAGAAATGCTCCTTG+TGG - chr3_3:80899956-80899975 None:intergenic 35.0%
!! CCACATCAATTTGCTATAAC+GGG - chr3_3:80899996-80900015 None:intergenic 35.0%
!! GCCACATCAATTTGCTATAA+CGG - chr3_3:80899997-80900016 None:intergenic 35.0%
TAGATCTGCAGTGAATTGAA+AGG + chr3_3:80900222-80900241 Msa0476960:three_prime_UTR 35.0%
AGATCTGCAGTGAATTGAAA+GGG + chr3_3:80900223-80900242 Msa0476960:three_prime_UTR 35.0%
GAAAGATAAAAGGAGGTAAG+GGG + chr3_3:80900263-80900282 Msa0476960:three_prime_UTR 35.0%
TAGAAACATAGGGCTGAAAA+TGG + chr3_3:80900343-80900362 Msa0476960:three_prime_UTR 35.0%
!!! TTTGTTTGGCTTTTCTACTG+AGG + chr3_3:80900450-80900469 Msa0476960:three_prime_UTR 35.0%
CTTATATACTTCTCACTCGC+CGG - chr3_3:80893082-80893101 None:intergenic 40.0%
! GTTCATCGACTGATGAATGA+TGG + chr3_3:80893220-80893239 Msa0476960:CDS 40.0%
ATTATGTATGCTACGAGGAG+AGG + chr3_3:80893265-80893284 Msa0476960:CDS 40.0%
TTATGTATGCTACGAGGAGA+GGG + chr3_3:80893266-80893285 Msa0476960:CDS 40.0%
! ATGAGGCTCATTCAAGTTCT+TGG + chr3_3:80893320-80893339 Msa0476960:CDS 40.0%
! TGAGGCTCATTCAAGTTCTT+GGG + chr3_3:80893321-80893340 Msa0476960:CDS 40.0%
!! GGGATCATTCTGCTTTTGTT+AGG + chr3_3:80893341-80893360 Msa0476960:CDS 40.0%
ATGCTTTGTATCTCGATCAG+AGG + chr3_3:80893368-80893387 Msa0476960:CDS 40.0%
! GATAGAAAAGCTGGTAGTGT+TGG + chr3_3:80893409-80893428 Msa0476960:CDS 40.0%
CCTCCATACTCATACTCATT+CGG - chr3_3:80893496-80893515 None:intergenic 40.0%
AATGAGTATGAGTATGGAGG+TGG + chr3_3:80893496-80893515 Msa0476960:CDS 40.0%
TATGGAGGTGGACAATTTAG+AGG + chr3_3:80893508-80893527 Msa0476960:CDS 40.0%
ATGGAGGTGGACAATTTAGA+GGG + chr3_3:80893509-80893528 Msa0476960:CDS 40.0%
! TGGTGATGTGAATGAAGTGT+CGG + chr3_3:80893561-80893580 Msa0476960:CDS 40.0%
TTGTTACTGTGACTCCTTTG+AGG + chr3_3:80893602-80893621 Msa0476960:CDS 40.0%
TGTTACTGTGACTCCTTTGA+GGG + chr3_3:80893603-80893622 Msa0476960:CDS 40.0%
! TGCATTGTATCCGTTGGTTA+AGG + chr3_3:80893738-80893757 Msa0476960:CDS 40.0%
! TGCTGATATATGCGAGGTTT+TGG + chr3_3:80893777-80893796 Msa0476960:CDS 40.0%
AGCACTTGCATAAGCATCAA+AGG - chr3_3:80893854-80893873 None:intergenic 40.0%
TCTTTGAACTTCCGGATACT+CGG - chr3_3:80893944-80893963 None:intergenic 40.0%
TAGTAAGTTGTTGGAGACAC+TGG + chr3_3:80893969-80893988 Msa0476960:CDS 40.0%
ATCTCGTTCATATCCTGAAC+CGG - chr3_3:80894081-80894100 None:intergenic 40.0%
TCAGGATATGAACGAGATCA+AGG + chr3_3:80894083-80894102 Msa0476960:CDS 40.0%
TCAGGGTAATAGATTTGCGT+TGG + chr3_3:80894224-80894243 Msa0476960:CDS 40.0%
AGACAGCCAGCAATTTATCT+AGG + chr3_3:80894391-80894410 Msa0476960:CDS 40.0%
CTTCTGCCTAGATAAATTGC+TGG - chr3_3:80894400-80894419 None:intergenic 40.0%
TCTAGGCAGAAGAATGCTTT+AGG + chr3_3:80894408-80894427 Msa0476960:CDS 40.0%
! AGAAGAATGCTTTAGGTGGT+GGG + chr3_3:80894415-80894434 Msa0476960:CDS 40.0%
TGGCATGTATGATCAAGGAA+TGG + chr3_3:80894458-80894477 Msa0476960:CDS 40.0%
TGTATGATCAAGGAATGGTG+AGG + chr3_3:80894463-80894482 Msa0476960:CDS 40.0%
AGGTGGAATGTTCAATGATG+CGG - chr3_3:80894628-80894647 None:intergenic 40.0%
! AATGGTACTGGATACTATGC+TGG + chr3_3:80894771-80894790 Msa0476960:CDS 40.0%
! ATGGTACTGGATACTATGCT+GGG + chr3_3:80894772-80894791 Msa0476960:CDS 40.0%
GAGATCTGCATTTAGTACGA+TGG + chr3_3:80894975-80894994 Msa0476960:intron 40.0%
TTTAGTACGATGGGATGCAA+AGG + chr3_3:80894985-80895004 Msa0476960:intron 40.0%
CGAGGAGACAATTTCTTGTT+TGG + chr3_3:80895016-80895035 Msa0476960:intron 40.0%
TCTCATGCAAGAACTAGCTA+CGG - chr3_3:80895304-80895323 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr3_3:80895448-80895467 Msa0476960:intron 40.0%
!! ATCTTGTGGTTCGTTTTGGT+TGG + chr3_3:80895617-80895636 Msa0476960:intron 40.0%
!!! TCTTGTGGTTCGTTTTGGTT+GGG + chr3_3:80895618-80895637 Msa0476960:intron 40.0%
!!! GTTTTGGTTGGGGTATTGTT+GGG + chr3_3:80895629-80895648 Msa0476960:intron 40.0%
!!! TTTTGGTTGGGGTATTGTTG+GGG + chr3_3:80895630-80895649 Msa0476960:intron 40.0%
AATGGATGTAGTAGGCTCTT+AGG + chr3_3:80895878-80895897 Msa0476960:intron 40.0%
ATGGATGTAGTAGGCTCTTA+GGG + chr3_3:80895879-80895898 Msa0476960:intron 40.0%
GACTTACTAATAAGAGGGAC+AGG - chr3_3:80896441-80896460 None:intergenic 40.0%
GCCCATGACTTACTAATAAG+AGG - chr3_3:80896447-80896466 None:intergenic 40.0%
TGCCATCTAATTAGGATCCA+AGG - chr3_3:80896568-80896587 None:intergenic 40.0%
ATGGCAAATAACATCACTCG+TGG + chr3_3:80896582-80896601 Msa0476960:intron 40.0%
AATTGTTAGGTCGGATGTCA+TGG - chr3_3:80897052-80897071 None:intergenic 40.0%
CATTGTGATCAAAGTTCGAC+CGG - chr3_3:80897174-80897193 None:intergenic 40.0%
TCTTCGGTTCTTAGGGTAAT+AGG - chr3_3:80897199-80897218 None:intergenic 40.0%
GTGAACTTAGCTCAATTGGT+AGG - chr3_3:80897693-80897712 None:intergenic 40.0%
!! TCAGTTGGTAGGAATATGCA+AGG - chr3_3:80898162-80898181 None:intergenic 40.0%
ATTACTGTGATTAACAGGGG+CGG - chr3_3:80898442-80898461 None:intergenic 40.0%
GTGCTATATTGTGATGTCTC+TGG + chr3_3:80898551-80898570 Msa0476960:intron 40.0%
CTATTGGGACAGAGAATAAG+AGG - chr3_3:80898825-80898844 None:intergenic 40.0%
GGGTCAGTGATTATGATCAT+TGG - chr3_3:80898906-80898925 None:intergenic 40.0%
TATAGGGTTACAAGAGAGCA+AGG + chr3_3:80899224-80899243 Msa0476960:intron 40.0%
!!! GGCTCTTTTCATTGGTTCAA+AGG + chr3_3:80899245-80899264 Msa0476960:CDS 40.0%
AAGTAGCTGAGCTTGATCAA+AGG + chr3_3:80899279-80899298 Msa0476960:CDS 40.0%
AGTAGCTGAGCTTGATCAAA+GGG + chr3_3:80899280-80899299 Msa0476960:CDS 40.0%
! AGCTTGATCAAAGGGTACAT+TGG + chr3_3:80899288-80899307 Msa0476960:intron 40.0%
AACTACTTAACTAGCGAGGA+AGG + chr3_3:80899454-80899473 Msa0476960:CDS 40.0%
GTGCTTGAACTATGGTGATA+AGG - chr3_3:80899495-80899514 None:intergenic 40.0%
GCACTTAACCATGCCAAAAA+TGG + chr3_3:80899511-80899530 Msa0476960:CDS 40.0%
! CACATTTTGCTAGGCCTAAT+AGG + chr3_3:80899686-80899705 Msa0476960:CDS 40.0%
TGCTAGGCCTAATAGGAAAA+AGG + chr3_3:80899693-80899712 Msa0476960:CDS 40.0%
ACAGCAATAATGTCAGAGCA+AGG - chr3_3:80899827-80899846 None:intergenic 40.0%
! TGTATTTTATTGTGGTGCGC+CGG + chr3_3:80899863-80899882 Msa0476960:CDS 40.0%
TTAAGTTCTTCGGCCAAAAC+CGG - chr3_3:80899885-80899904 None:intergenic 40.0%
! AGGCTTCGAGTTCAATGAAA+AGG + chr3_3:80899911-80899930 Msa0476960:CDS 40.0%
! GGCTTCGAGTTCAATGAAAA+GGG + chr3_3:80899912-80899931 Msa0476960:CDS 40.0%
CCCGTTATAGCAAATTGATG+TGG + chr3_3:80899993-80900012 Msa0476960:three_prime_UTR 40.0%
TATCAGACAGCAAACATGCT+TGG + chr3_3:80900084-80900103 Msa0476960:three_prime_UTR 40.0%
AATTGAAAGGGACAGTTCTG+AGG + chr3_3:80900235-80900254 Msa0476960:three_prime_UTR 40.0%
! ACCGAACCCTGATTTTTGTT+TGG + chr3_3:80900436-80900455 Msa0476960:three_prime_UTR 40.0%
GCCAAACAAAAATCAGGGTT+CGG - chr3_3:80900440-80900459 None:intergenic 40.0%
CATATAGACCTTTCCTCTGA+GGG - chr3_3:80900481-80900500 None:intergenic 40.0%
ACATATAGACCTTTCCTCTG+AGG - chr3_3:80900482-80900501 None:intergenic 40.0%
AGCACAATCCGAAAAGCGAT+TGG + chr3_3:80892953-80892972 Msa0476960:CDS 45.0%
AATCCGAAAAGCGATTGGAG+CGG + chr3_3:80892958-80892977 Msa0476960:CDS 45.0%
GTGAAGGATCAGACGAGTAT+TGG + chr3_3:80892980-80892999 Msa0476960:CDS 45.0%
AACTTGATGTCTTACTCGCG+TGG + chr3_3:80893112-80893131 Msa0476960:CDS 45.0%
! AGAAAAGCTGGTAGTGTTGG+TGG + chr3_3:80893412-80893431 Msa0476960:CDS 45.0%
CCATACTCATACTCATTCGG+TGG - chr3_3:80893493-80893512 None:intergenic 45.0%
CCACCGAATGAGTATGAGTA+TGG + chr3_3:80893490-80893509 Msa0476960:CDS 45.0%
CCGAATGAGTATGAGTATGG+AGG + chr3_3:80893493-80893512 Msa0476960:CDS 45.0%
TGGAGGTGGACAATTTAGAG+GGG + chr3_3:80893510-80893529 Msa0476960:CDS 45.0%
GACAATTTAGAGGGGAAGGT+GGG + chr3_3:80893518-80893537 Msa0476960:CDS 45.0%
! GGTGATGTGAATGAAGTGTC+GGG + chr3_3:80893562-80893581 Msa0476960:CDS 45.0%
!! GTGATGTGAATGAAGTGTCG+GGG + chr3_3:80893563-80893582 Msa0476960:CDS 45.0%
TGTCGGGGAATGATGATAGA+AGG + chr3_3:80893578-80893597 Msa0476960:CDS 45.0%
! TCCTTTGAGGGATATGAAGC+CGG + chr3_3:80893615-80893634 Msa0476960:CDS 45.0%
! ATGAAGCCGGAGAGGATTTT+CGG + chr3_3:80893628-80893647 Msa0476960:CDS 45.0%
ATCTTCCCGAAAATCCTCTC+CGG - chr3_3:80893637-80893656 None:intergenic 45.0%
GGAAGATGAGTCATTTGCAG+AGG + chr3_3:80893650-80893669 Msa0476960:CDS 45.0%
! GAGTCATTTGCAGAGGCTTT+TGG + chr3_3:80893657-80893676 Msa0476960:CDS 45.0%
! GAGGCTTTTGGATCGTTTCT+TGG + chr3_3:80893669-80893688 Msa0476960:CDS 45.0%
!! TGGATCGTTTCTTGGCTTGT+AGG + chr3_3:80893677-80893696 Msa0476960:CDS 45.0%
TTGTTCTTAGCCAACCCAGT+TGG - chr3_3:80893703-80893722 None:intergenic 45.0%
!! CTGGGTTGGCTAAGAACAAT+AGG + chr3_3:80893704-80893723 Msa0476960:CDS 45.0%
GCTGTATGCTGATATATGCG+AGG + chr3_3:80893771-80893790 Msa0476960:CDS 45.0%
! GGAGTATCCTGATTGTGTGA+AGG + chr3_3:80893828-80893847 Msa0476960:CDS 45.0%
TCAAAGGCCTTCACACAATC+AGG - chr3_3:80893838-80893857 None:intergenic 45.0%
TAAGTTGTTGGAGACACTGG+AGG + chr3_3:80893972-80893991 Msa0476960:CDS 45.0%
TCTTTCCTCTCTGGACTCTT+TGG - chr3_3:80894024-80894043 None:intergenic 45.0%
AAAGAGTCCAGAGAGGAAAG+AGG + chr3_3:80894023-80894042 Msa0476960:CDS 45.0%
! TCCTAAGCTGGAAGTACAAG+AGG + chr3_3:80894050-80894069 Msa0476960:CDS 45.0%
TCCTCTTGTACTTCCAGCTT+AGG - chr3_3:80894054-80894073 None:intergenic 45.0%
! TAAGCTGGAAGTACAAGAGG+AGG + chr3_3:80894053-80894072 Msa0476960:CDS 45.0%
TGAGCCAAAACCGCAGTTTA+CGG + chr3_3:80894158-80894177 Msa0476960:CDS 45.0%
TGGGAAGCCTTTCCATCAAA+TGG + chr3_3:80894291-80894310 Msa0476960:CDS 45.0%
CTTTCCATCAAATGGACAGC+CGG + chr3_3:80894299-80894318 Msa0476960:CDS 45.0%
TGCCAAGCTGAAGTTACTTC+CGG - chr3_3:80894321-80894340 None:intergenic 45.0%
! AGGCAGAAGAATGCTTTAGG+TGG + chr3_3:80894411-80894430 Msa0476960:CDS 45.0%
! CAGAAGAATGCTTTAGGTGG+TGG + chr3_3:80894414-80894433 Msa0476960:CDS 45.0%
! GAGAGCTAAAACAGGTGTTG+TGG - chr3_3:80894559-80894578 None:intergenic 45.0%
ATCTGTGCAGCCAGTTAATC+AGG + chr3_3:80894593-80894612 Msa0476960:CDS 45.0%
ATGTTCAATGATGCGGCGAA+CGG - chr3_3:80894621-80894640 None:intergenic 45.0%
CATTTCGGCCATTTGCACAT+AGG - chr3_3:80894655-80894674 None:intergenic 45.0%
CTATGTGCAAATGGCCGAAA+TGG + chr3_3:80894653-80894672 Msa0476960:CDS 45.0%
! TGGTACTGGATACTATGCTG+GGG + chr3_3:80894773-80894792 Msa0476960:CDS 45.0%
GTATGGTAATACCCGTTTGG+AGG - chr3_3:80894840-80894859 None:intergenic 45.0%
GGAGTATGGTAATACCCGTT+TGG - chr3_3:80894843-80894862 None:intergenic 45.0%
AGGGGGATCATATAGGAGTA+TGG - chr3_3:80894857-80894876 None:intergenic 45.0%
TGGCAAAAAGAAAGGGTGAG+GGG - chr3_3:80894875-80894894 None:intergenic 45.0%
GTGGCAAAAAGAAAGGGTGA+GGG - chr3_3:80894876-80894895 None:intergenic 45.0%
TGTGGCAAAAAGAAAGGGTG+AGG - chr3_3:80894877-80894896 None:intergenic 45.0%
!!! CTTGTGGTTCGTTTTGGTTG+GGG + chr3_3:80895619-80895638 Msa0476960:intron 45.0%
!!! CGTTTTGGTTGGGGTATTGT+TGG + chr3_3:80895628-80895647 Msa0476960:intron 45.0%
!! TTTGGTTGGGGTATTGTTGG+GGG + chr3_3:80895631-80895650 Msa0476960:intron 45.0%
!! GGGCTATGACTTTGACTTGA+AGG + chr3_3:80896463-80896482 Msa0476960:intron 45.0%
! GTTGAGACTTTGGTGACCAA+AGG - chr3_3:80896526-80896545 None:intergenic 45.0%
CCAGATTAGGTGCGTATGAT+GGG - chr3_3:80896625-80896644 None:intergenic 45.0%
TCCAGATTAGGTGCGTATGA+TGG - chr3_3:80896626-80896645 None:intergenic 45.0%
TAAACTCTCACACACCCAAG+TGG + chr3_3:80897003-80897022 Msa0476960:intron 45.0%
CCTCGTGAACTTAGCTCAAT+TGG - chr3_3:80897697-80897716 None:intergenic 45.0%
CCAATTGAGCTAAGTTCACG+AGG + chr3_3:80897694-80897713 Msa0476960:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG - chr3_3:80898173-80898192 None:intergenic 45.0%
! TGTGTGTGTGTGTGTTGGTA+TGG + chr3_3:80898394-80898413 Msa0476960:intron 45.0%
! TGTGTTGGTATGGCCTCTAA+AGG + chr3_3:80898404-80898423 Msa0476960:intron 45.0%
! GTGTTGGTATGGCCTCTAAA+GGG + chr3_3:80898405-80898424 Msa0476960:intron 45.0%
GATGTCTCTGGTAGCATGAT+CGG + chr3_3:80898563-80898582 Msa0476960:intron 45.0%
! GAAAATGAGGTGCTTGCATG+GGG - chr3_3:80898787-80898806 None:intergenic 45.0%
! GGAAAATGAGGTGCTTGCAT+GGG - chr3_3:80898788-80898807 None:intergenic 45.0%
! GAGAGCAAGGCTCTTTTCAT+TGG + chr3_3:80899237-80899256 Msa0476960:CDS 45.0%
GCACAACTACTTAACTAGCG+AGG + chr3_3:80899450-80899469 Msa0476960:CDS 45.0%
! AGGTACGGACACATTTTGCT+AGG + chr3_3:80899677-80899696 Msa0476960:intron 45.0%
ATGTGTTCCAAGCACGATAG+TGG + chr3_3:80899727-80899746 Msa0476960:CDS 45.0%
TATTCGTCCACTATCGTGCT+TGG - chr3_3:80899737-80899756 None:intergenic 45.0%
!! AAGCACGATAGTGGACGAAT+AGG + chr3_3:80899736-80899755 Msa0476960:CDS 45.0%
TAAAAGGAGGTAAGGGGACA+AGG + chr3_3:80900269-80900288 Msa0476960:three_prime_UTR 45.0%
AAAAGGAGGTAAGGGGACAA+GGG + chr3_3:80900270-80900289 Msa0476960:three_prime_UTR 45.0%
ACGCTGGAATCGTCATGTAA+GGG + chr3_3:80900372-80900391 Msa0476960:three_prime_UTR 45.0%
TACTGAGGAATTTCCCTCAG+AGG + chr3_3:80900465-80900484 Msa0476960:three_prime_UTR 45.0%
AGGAATTTCCCTCAGAGGAA+AGG + chr3_3:80900470-80900489 Msa0476960:three_prime_UTR 45.0%
! AGCTCTAGTCGTAACCTTGA+TGG - chr3_3:80900538-80900557 None:intergenic 45.0%
!!! TTACTTTTTAATTTTTTTAT+GGG - chr3_3:80896403-80896422 None:intergenic 5.0%
!!! TTTACTTTTTAATTTTTTTA+TGG - chr3_3:80896404-80896423 None:intergenic 5.0%
!! AATACAAAAATTTAATAATA+TGG - chr3_3:80897348-80897367 None:intergenic 5.0%
!!! AATATGAATTTTTATATTTT+TGG - chr3_3:80897470-80897489 None:intergenic 5.0%
!!! AATATGAATTTTTATATTTT+TGG - chr3_3:80897470-80897489 None:intergenic 5.0%
!! TCACCGCTCCAATCGCTTTT+CGG - chr3_3:80892964-80892983 None:intergenic 50.0%
AAAAGCGATTGGAGCGGTGA+AGG + chr3_3:80892964-80892983 Msa0476960:CDS 50.0%
AGCGAAAGTAGCGAGCAACA+TGG + chr3_3:80893006-80893025 Msa0476960:CDS 50.0%
ACAATCGCCACCTCCAATTC+CGG - chr3_3:80893034-80893053 None:intergenic 50.0%
TTCAGCTGTGTCCAAGCGAT+TGG + chr3_3:80893153-80893172 Msa0476960:CDS 50.0%
TCAGCTGTGTCCAAGCGATT+GGG + chr3_3:80893154-80893173 Msa0476960:CDS 50.0%
!!! TGATGGAACGCCGATTTTCC+AGG + chr3_3:80893237-80893256 Msa0476960:CDS 50.0%
!! AAAGCTGGTAGTGTTGGTGG+TGG + chr3_3:80893415-80893434 Msa0476960:CDS 50.0%
GGTGGACAATTTAGAGGGGA+AGG + chr3_3:80893514-80893533 Msa0476960:CDS 50.0%
GGACAATTTAGAGGGGAAGG+TGG + chr3_3:80893517-80893536 Msa0476960:CDS 50.0%
ATGAGGAAGACGAGGTCGTA+TGG + chr3_3:80893541-80893560 Msa0476960:CDS 50.0%
TCCGGCTTCATATCCCTCAA+AGG - chr3_3:80893619-80893638 None:intergenic 50.0%
! TGAAGCCGGAGAGGATTTTC+GGG + chr3_3:80893629-80893648 Msa0476960:CDS 50.0%
!! TTCTTGGCTTGTAGGCCAAC+TGG + chr3_3:80893685-80893704 Msa0476960:CDS 50.0%
!! TCTTGGCTTGTAGGCCAACT+GGG + chr3_3:80893686-80893705 Msa0476960:CDS 50.0%
TTGAACTTCCGGATACTCGG+AGG - chr3_3:80893941-80893960 None:intergenic 50.0%
AGACACTGGAGGAGTTTGTG+AGG + chr3_3:80893983-80894002 Msa0476960:CDS 50.0%
GACACTGGAGGAGTTTGTGA+GGG + chr3_3:80893984-80894003 Msa0476960:CDS 50.0%
TGGAGGAGTTTGTGAGGGAT+AGG + chr3_3:80893989-80894008 Msa0476960:CDS 50.0%
GGAGGAGTTTGTGAGGGATA+GGG + chr3_3:80893990-80894009 Msa0476960:CDS 50.0%
TTGTGAGGGATAGGGCTAAG+AGG + chr3_3:80893998-80894017 Msa0476960:CDS 50.0%
GAAAGAGGAAGCTCCTAAGC+TGG + chr3_3:80894038-80894057 Msa0476960:CDS 50.0%
GGGGTATAATTCTCAGGTGC+AGG - chr3_3:80894114-80894133 None:intergenic 50.0%
!!! GTAAACTGCGGTTTTGGCTC+AGG - chr3_3:80894159-80894178 None:intergenic 50.0%
! TCCTCCGTAAACTGCGGTTT+TGG - chr3_3:80894165-80894184 None:intergenic 50.0%
ACCAAGTCCTCCGTAAACTG+CGG - chr3_3:80894171-80894190 None:intergenic 50.0%
!! GGAGGACTTGGTGAATCTGA+GGG + chr3_3:80894179-80894198 Msa0476960:CDS 50.0%
! TTTGCGTTGGCACTCTTTGC+TGG + chr3_3:80894237-80894256 Msa0476960:CDS 50.0%
CGGCTGTCCATTTGATGGAA+AGG - chr3_3:80894301-80894320 None:intergenic 50.0%
ACTTCCGGCTGTCCATTTGA+TGG - chr3_3:80894306-80894325 None:intergenic 50.0%
AGCCGGAAGTAACTTCAGCT+TGG + chr3_3:80894316-80894335 Msa0476960:CDS 50.0%
! TGAACCTGGGAAAGCGGATT+GGG + chr3_3:80894353-80894372 Msa0476960:CDS 50.0%
GTGAGCACTTCCCAACTTAG+TGG + chr3_3:80894492-80894511 Msa0476960:CDS 50.0%
AGCACTTCCCAACTTAGTGG+AGG + chr3_3:80894495-80894514 Msa0476960:CDS 50.0%
GCACTTCCCAACTTAGTGGA+GGG + chr3_3:80894496-80894515 Msa0476960:CDS 50.0%
AGCACTCCCTCCACTAAGTT+GGG - chr3_3:80894505-80894524 None:intergenic 50.0%
TAGCACTCCCTCCACTAAGT+TGG - chr3_3:80894506-80894525 None:intergenic 50.0%
! ACAGGTGTTGTGGTCTTTCC+CGG - chr3_3:80894549-80894568 None:intergenic 50.0%
GCGAACGGATCCTGATTAAC+TGG - chr3_3:80894606-80894625 None:intergenic 50.0%
ATTTGCACATAGGAGGGAGG+TGG - chr3_3:80894645-80894664 None:intergenic 50.0%
ACCTCCCTCCTATGTGCAAA+TGG + chr3_3:80894644-80894663 Msa0476960:CDS 50.0%
TCGGCCATTTGCACATAGGA+GGG - chr3_3:80894651-80894670 None:intergenic 50.0%
TTCGGCCATTTGCACATAGG+AGG - chr3_3:80894652-80894671 None:intergenic 50.0%
AGCTGTGGCATCAGTATGCA+AGG + chr3_3:80894709-80894728 Msa0476960:CDS 50.0%
GCTGTGGCATCAGTATGCAA+GGG + chr3_3:80894710-80894729 Msa0476960:CDS 50.0%
TGGCATCAGTATGCAAGGGA+TGG + chr3_3:80894714-80894733 Msa0476960:CDS 50.0%
GGCATCAGTATGCAAGGGAT+GGG + chr3_3:80894715-80894734 Msa0476960:CDS 50.0%
TATGCAAGGGATGGGATGCA+AGG + chr3_3:80894723-80894742 Msa0476960:CDS 50.0%
! GGTACTGGATACTATGCTGG+GGG + chr3_3:80894774-80894793 Msa0476960:CDS 50.0%
!! TGAACTGGGGGCATTCCATA+AGG - chr3_3:80894807-80894826 None:intergenic 50.0%
TATGGAATGCCCCCAGTTCA+TGG + chr3_3:80894807-80894826 Msa0476960:CDS 50.0%
AATGCCCCCAGTTCATGGAA+TGG + chr3_3:80894812-80894831 Msa0476960:CDS 50.0%
ATGCCCCCAGTTCATGGAAT+GGG + chr3_3:80894813-80894832 Msa0476960:CDS 50.0%
AGGTCCCATTCCATGAACTG+GGG - chr3_3:80894820-80894839 None:intergenic 50.0%
GAGGTCCCATTCCATGAACT+GGG - chr3_3:80894821-80894840 None:intergenic 50.0%
CATGGAATGGGACCTCCAAA+CGG + chr3_3:80894825-80894844 Msa0476960:CDS 50.0%
ATGGAATGGGACCTCCAAAC+GGG + chr3_3:80894826-80894845 Msa0476960:CDS 50.0%
AAGGGTGAGGGGGATCATAT+AGG - chr3_3:80894864-80894883 None:intergenic 50.0%
GGCAAAAAGAAAGGGTGAGG+GGG - chr3_3:80894874-80894893 None:intergenic 50.0%
ACGATGGGATGCAAAGGAGA+CGG + chr3_3:80894991-80895010 Msa0476960:intron 50.0%
CCCATCATACGCACCTAATC+TGG + chr3_3:80896622-80896641 Msa0476960:intron 50.0%
ACCACGAGTCCTAGTCCAAT+TGG - chr3_3:80897088-80897107 None:intergenic 50.0%
GTGATCAAAGTTCGACCGGA+AGG - chr3_3:80897170-80897189 None:intergenic 50.0%
CCTCGTGAACTTAGCTCAGT+TGG - chr3_3:80898177-80898196 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG + chr3_3:80898174-80898193 Msa0476960:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+TGG + chr3_3:80898389-80898408 Msa0476960:intron 50.0%
TGGTAGCATGATCGGTGACT+AGG + chr3_3:80898571-80898590 Msa0476960:intron 50.0%
GGTAGCATGATCGGTGACTA+GGG + chr3_3:80898572-80898591 Msa0476960:intron 50.0%
GTAGCATGATCGGTGACTAG+GGG + chr3_3:80898573-80898592 Msa0476960:intron 50.0%
TAGCATGATCGGTGACTAGG+GGG + chr3_3:80898574-80898593 Msa0476960:intron 50.0%
! GGGAAAATGAGGTGCTTGCA+TGG - chr3_3:80898789-80898808 None:intergenic 50.0%
! GGCAGTGAGAGAGTGTAGAT+GGG - chr3_3:80898926-80898945 None:intergenic 50.0%
! TGGCAGTGAGAGAGTGTAGA+TGG - chr3_3:80898927-80898946 None:intergenic 50.0%
!!! TTATTGTGGTGCGCCGGTTT+TGG + chr3_3:80899869-80899888 Msa0476960:CDS 50.0%
CTGAAAATGGTGACTCACGC+TGG + chr3_3:80900356-80900375 Msa0476960:three_prime_UTR 50.0%
CACGCTGGAATCGTCATGTA+AGG + chr3_3:80900371-80900390 Msa0476960:three_prime_UTR 50.0%
! ATCAGGGTTCGGTTGAGAGA+CGG - chr3_3:80900429-80900448 None:intergenic 50.0%
GACGAGTCACGACGAAGATC+CGG + chr3_3:80893060-80893079 Msa0476960:CDS 55.0%
CAGCTGTGTCCAAGCGATTG+GGG + chr3_3:80893155-80893174 Msa0476960:CDS 55.0%
GATTGGGGAAGACGCGTGAT+TGG + chr3_3:80893170-80893189 Msa0476960:CDS 55.0%
ATGCTACGAGGAGAGGGACT+AGG + chr3_3:80893272-80893291 Msa0476960:CDS 55.0%
GTGGGGATGAGAGGTTCAGT+GGG + chr3_3:80893446-80893465 Msa0476960:CDS 55.0%
TTAGAGGGGAAGGTGGGATG+AGG + chr3_3:80893524-80893543 Msa0476960:CDS 55.0%
AAGGTGGGATGAGGAAGACG+AGG + chr3_3:80893533-80893552 Msa0476960:CDS 55.0%
TGAGGGATATGAAGCCGGAG+AGG + chr3_3:80893620-80893639 Msa0476960:CDS 55.0%
AGAGGCCAAAGAGTCCAGAG+AGG + chr3_3:80894016-80894035 Msa0476960:CDS 55.0%
GGAGCTTCCTCTTTCCTCTC+TGG - chr3_3:80894033-80894052 None:intergenic 55.0%
! GGAAGTACAAGAGGAGGAGC+CGG + chr3_3:80894059-80894078 Msa0476960:CDS 55.0%
!! GGTGGCGGGGTATAATTCTC+AGG - chr3_3:80894120-80894139 None:intergenic 55.0%
GCCAAAACCGCAGTTTACGG+AGG + chr3_3:80894161-80894180 Msa0476960:CDS 55.0%
ACCGCAGTTTACGGAGGACT+TGG + chr3_3:80894167-80894186 Msa0476960:CDS 55.0%
!! CGGAGGACTTGGTGAATCTG+AGG + chr3_3:80894178-80894197 Msa0476960:CDS 55.0%
!! GGACTTGGTGAATCTGAGGG+AGG + chr3_3:80894182-80894201 Msa0476960:CDS 55.0%
TGCAGTCACTGCAGACGATC+AGG + chr3_3:80894206-80894225 Msa0476960:CDS 55.0%
GCAGTCACTGCAGACGATCA+GGG + chr3_3:80894207-80894226 Msa0476960:CDS 55.0%
AAACCCCTGCAGCTGAACCT+GGG + chr3_3:80894340-80894359 Msa0476960:CDS 55.0%
TTTCCCAGGTTCAGCTGCAG+GGG - chr3_3:80894346-80894365 None:intergenic 55.0%
CTTTCCCAGGTTCAGCTGCA+GGG - chr3_3:80894347-80894366 None:intergenic 55.0%
TGCAGCTGAACCTGGGAAAG+CGG + chr3_3:80894347-80894366 Msa0476960:CDS 55.0%
CTGAACCTGGGAAAGCGGAT+TGG + chr3_3:80894352-80894371 Msa0476960:CDS 55.0%
AGTTCCCAATCCGCTTTCCC+AGG - chr3_3:80894360-80894379 None:intergenic 55.0%
!! TGGGAAAGCGGATTGGGAAC+TGG + chr3_3:80894359-80894378 Msa0476960:CDS 55.0%
!! AGCGGATTGGGAACTGGCAT+TGG + chr3_3:80894365-80894384 Msa0476960:CDS 55.0%
TGGCTGCACAGATCCATCTG+GGG - chr3_3:80894586-80894605 None:intergenic 55.0%
CTGGCTGCACAGATCCATCT+GGG - chr3_3:80894587-80894606 None:intergenic 55.0%
ACTGGCTGCACAGATCCATC+TGG - chr3_3:80894588-80894607 None:intergenic 55.0%
GCCATTTGCACATAGGAGGG+AGG - chr3_3:80894648-80894667 None:intergenic 55.0%
TTGTGCATGAGCAGCAGCTG+TGG + chr3_3:80894694-80894713 Msa0476960:CDS 55.0%
!! GGGGGCATTCCATAAGGCAT+AGG - chr3_3:80894801-80894820 None:intergenic 55.0%
GGTCCCATTCCATGAACTGG+GGG - chr3_3:80894819-80894838 None:intergenic 55.0%
GGAGGTCCCATTCCATGAAC+TGG - chr3_3:80894822-80894841 None:intergenic 55.0%
GATGCAAAGGAGACGGTTCG+AGG + chr3_3:80894998-80895017 Msa0476960:intron 55.0%
!! TGGGGTATTGTTGGGGGATG+AGG + chr3_3:80895637-80895656 Msa0476960:intron 55.0%
!! GGGGTATTGTTGGGGGATGA+GGG + chr3_3:80895638-80895657 Msa0476960:intron 55.0%
TGGGGGATGAGGGTAGTAAC+AGG + chr3_3:80895648-80895667 Msa0476960:intron 55.0%
GGGGGATGAGGGTAGTAACA+GGG + chr3_3:80895649-80895668 Msa0476960:intron 55.0%
GGGGATGAGGGTAGTAACAG+GGG + chr3_3:80895650-80895669 Msa0476960:intron 55.0%
ACTCTCACACACCCAAGTGG+AGG + chr3_3:80897006-80897025 Msa0476960:intron 55.0%
! ACACACCCAAGTGGAGGTGT+CGG + chr3_3:80897012-80897031 Msa0476960:intron 55.0%
!! AGGTGTCGGGGTTCAAACCT+TGG + chr3_3:80897026-80897045 Msa0476960:intron 55.0%
TAGGTCGGATGTCATGGCCA+AGG - chr3_3:80897046-80897065 None:intergenic 55.0%
! GCCAATTGGACTAGGACTCG+TGG + chr3_3:80897084-80897103 Msa0476960:intron 55.0%
TTAACAGGGGCGGAGGGATT+GGG - chr3_3:80898432-80898451 None:intergenic 55.0%
ATTAACAGGGGCGGAGGGAT+TGG - chr3_3:80898433-80898452 None:intergenic 55.0%
CTGTGATTAACAGGGGCGGA+GGG - chr3_3:80898438-80898457 None:intergenic 55.0%
ACTGTGATTAACAGGGGCGG+AGG - chr3_3:80898439-80898458 None:intergenic 55.0%
! GGGAAGGCACACAGAGTATG+GGG - chr3_3:80898767-80898786 None:intergenic 55.0%
! GGGGAAGGCACACAGAGTAT+GGG - chr3_3:80898768-80898787 None:intergenic 55.0%
! TGGGGAAGGCACACAGAGTA+TGG - chr3_3:80898769-80898788 None:intergenic 55.0%
! ATGAGGTGCTTGCATGGGGA+AGG - chr3_3:80898783-80898802 None:intergenic 55.0%
GAGGTAAGGGGACAAGGGAT+TGG + chr3_3:80900275-80900294 Msa0476960:three_prime_UTR 55.0%
TCGGTTGAGAGACGGAGAGA+GGG - chr3_3:80900421-80900440 None:intergenic 55.0%
TTCGGTTGAGAGACGGAGAG+AGG - chr3_3:80900422-80900441 None:intergenic 55.0%
AGTAGCGAGCAACATGGCGC+CGG + chr3_3:80893012-80893031 Msa0476960:CDS 60.0%
! GAGCAACATGGCGCCGGAAT+TGG + chr3_3:80893018-80893037 Msa0476960:CDS 60.0%
! CAACATGGCGCCGGAATTGG+AGG + chr3_3:80893021-80893040 Msa0476960:CDS 60.0%
ACGCGTCTTCCCCAATCGCT+TGG - chr3_3:80893167-80893186 None:intergenic 60.0%
!! GCTGGTAGTGTTGGTGGTGG+TGG + chr3_3:80893418-80893437 Msa0476960:CDS 60.0%
!! GGTAGTGTTGGTGGTGGTGG+TGG + chr3_3:80893421-80893440 Msa0476960:CDS 60.0%
!! AGTGTTGGTGGTGGTGGTGG+AGG + chr3_3:80893424-80893443 Msa0476960:CDS 60.0%
!! TTGGTGGTGGTGGTGGAGGT+GGG + chr3_3:80893428-80893447 Msa0476960:CDS 60.0%
GGTGGGGATGAGAGGTTCAG+TGG + chr3_3:80893445-80893464 Msa0476960:CDS 60.0%
GGCTTGTAGGCCAACTGGGT+TGG + chr3_3:80893690-80893709 Msa0476960:CDS 60.0%
GGCGAGATCCTCCGAGTATC+CGG + chr3_3:80893930-80893949 Msa0476960:CDS 60.0%
! ACAAGAGGAGGAGCCGGTTC+AGG + chr3_3:80894065-80894084 Msa0476960:CDS 60.0%
! TTTGGCTCAGGCTCAGGCTC+TGG - chr3_3:80894147-80894166 None:intergenic 60.0%
!!! TGCGGTTTTGGCTCAGGCTC+AGG - chr3_3:80894153-80894172 None:intergenic 60.0%
GGCACTCTTTGCTGGTGCAC+CGG + chr3_3:80894245-80894264 Msa0476960:CDS 60.0%
CAAACCCCTGCAGCTGAACC+TGG + chr3_3:80894339-80894358 Msa0476960:CDS 60.0%
GCTTTCCCAGGTTCAGCTGC+AGG - chr3_3:80894348-80894367 None:intergenic 60.0%
!! TGGAGGGAGTGCTAGCAGTG+TGG + chr3_3:80894512-80894531 Msa0476960:CDS 60.0%
TGCTAGCAGTGTGGCGTTGC+CGG + chr3_3:80894521-80894540 Msa0476960:CDS 60.0%
GTTGTGGTCTTTCCCGGTCC+CGG - chr3_3:80894543-80894562 None:intergenic 60.0%
GGGGCTGGGAGAGCTAAAAC+AGG - chr3_3:80894567-80894586 None:intergenic 60.0%
! TTAGCTCTCCCAGCCCCAGA+TGG + chr3_3:80894570-80894589 Msa0476960:CDS 60.0%
! GCACAGATCCATCTGGGGCT+GGG - chr3_3:80894581-80894600 None:intergenic 60.0%
! TGCACAGATCCATCTGGGGC+TGG - chr3_3:80894582-80894601 None:intergenic 60.0%
GCTGGGGGTCCTATGCCTTA+TGG + chr3_3:80894789-80894808 Msa0476960:CDS 60.0%
!! CACACCCAAGTGGAGGTGTC+GGG + chr3_3:80897013-80897032 Msa0476960:intron 60.0%
!! ACACCCAAGTGGAGGTGTCG+GGG + chr3_3:80897014-80897033 Msa0476960:intron 60.0%
GAACCCCGACACCTCCACTT+GGG - chr3_3:80897020-80897039 None:intergenic 60.0%
TGAACCCCGACACCTCCACT+TGG - chr3_3:80897021-80897040 None:intergenic 60.0%
GAGGGATTGGGGCCCTTTAG+AGG - chr3_3:80898420-80898439 None:intergenic 60.0%
TAACAGGGGCGGAGGGATTG+GGG - chr3_3:80898431-80898450 None:intergenic 60.0%
! CATGGCGCCGGAATTGGAGG+TGG + chr3_3:80893024-80893043 Msa0476960:CDS 65.0%
!! GTTGGTGGTGGTGGTGGAGG+TGG + chr3_3:80893427-80893446 Msa0476960:CDS 65.0%
!! TGGTGGTGGTGGTGGAGGTG+GGG + chr3_3:80893429-80893448 Msa0476960:CDS 65.0%
! GTGGTGGAGGTGGGGATGAG+AGG + chr3_3:80893437-80893456 Msa0476960:CDS 65.0%
! TCAGGCTCTGGTGGAGGTGG+CGG - chr3_3:80894135-80894154 None:intergenic 65.0%
! TCAGGCTCAGGCTCTGGTGG+AGG - chr3_3:80894141-80894160 None:intergenic 65.0%
GCTAGCAGTGTGGCGTTGCC+GGG + chr3_3:80894522-80894541 Msa0476960:CDS 65.0%
! AGGCTCTGGTGGAGGTGGCG+GGG - chr3_3:80894133-80894152 None:intergenic 70.0%
! CAGGCTCTGGTGGAGGTGGC+GGG - chr3_3:80894134-80894153 None:intergenic 70.0%
! GGCTCAGGCTCTGGTGGAGG+TGG - chr3_3:80894138-80894157 None:intergenic 70.0%
! GGCTCAGGCTCAGGCTCTGG+TGG - chr3_3:80894144-80894163 None:intergenic 70.0%
CAGTGTGGCGTTGCCGGGAC+CGG + chr3_3:80894527-80894546 Msa0476960:CDS 70.0%
AGTGTGGCGTTGCCGGGACC+GGG + chr3_3:80894528-80894547 Msa0476960:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80892944 80900679 80892944 ID=Msa0476960;Name=Msa0476960
chr3_3 mRNA 80892944 80900679 80892944 ID=Msa0476960-mRNA-1;Parent=Msa0476960;Name=Msa0476960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.6|1|1|1|5|708|762
chr3_3 exon 80892944 80894847 80892944 ID=Msa0476960-mRNA-1:exon:22263;Parent=Msa0476960-mRNA-1
chr3_3 exon 80899229 80899301 80899229 ID=Msa0476960-mRNA-1:exon:22264;Parent=Msa0476960-mRNA-1
chr3_3 exon 80899436 80899558 80899436 ID=Msa0476960-mRNA-1:exon:22265;Parent=Msa0476960-mRNA-1
chr3_3 exon 80899679 80899757 80899679 ID=Msa0476960-mRNA-1:exon:22266;Parent=Msa0476960-mRNA-1
chr3_3 exon 80899862 80900679 80899862 ID=Msa0476960-mRNA-1:exon:22267;Parent=Msa0476960-mRNA-1
chr3_3 CDS 80892944 80894847 80892944 ID=Msa0476960-mRNA-1:cds;Parent=Msa0476960-mRNA-1
chr3_3 CDS 80899229 80899301 80899229 ID=Msa0476960-mRNA-1:cds;Parent=Msa0476960-mRNA-1
chr3_3 CDS 80899436 80899558 80899436 ID=Msa0476960-mRNA-1:cds;Parent=Msa0476960-mRNA-1
chr3_3 CDS 80899679 80899757 80899679 ID=Msa0476960-mRNA-1:cds;Parent=Msa0476960-mRNA-1
chr3_3 CDS 80899862 80899971 80899862 ID=Msa0476960-mRNA-1:cds;Parent=Msa0476960-mRNA-1
chr3_3 three_prime_UTR 80899972 80900679 80899972 ID=Msa0476960-mRNA-1:three_prime_utr;Parent=Msa0476960-mRNA-1
Gene Sequence

>Msa0476960

ATGACTTCGAGCACAATCCGAAAAGCGATTGGAGCGGTGAAGGATCAGACGAGTATTGGAATAGCGAAAGTAGCGAGCAACATGGCGCCGGAATTGGAGGTGGCGATTGTGAAAGCGACGAGTCACGACGAAGATCCGGCGAGTGAGAAGTATATAAGAGAGATCTTGAACTTGATGTCTTACTCGCGTGGTTATGTGAACGCGTGTGTTTCAGCTGTGTCCAAGCGATTGGGGAAGACGCGTGATTGGATTGTTGCGTTGAAAGCTCTTATACTTGTTCATCGACTGATGAATGATGGAACGCCGATTTTCCAGGAAGAGATTATGTATGCTACGAGGAGAGGGACTAGGTTGTTGAATATGTCTGATTTTAGAGATGAGGCTCATTCAAGTTCTTGGGATCATTCTGCTTTTGTTAGGACTTATGCTTTGTATCTCGATCAGAGGCTTGAGTTGATGTTGTTTGATAGAAAAGCTGGTAGTGTTGGTGGTGGTGGTGGAGGTGGGGATGAGAGGTTCAGTGGGAGAGAAAATAATTTCAGGTCGCCACCGAATGAGTATGAGTATGGAGGTGGACAATTTAGAGGGGAAGGTGGGATGAGGAAGACGAGGTCGTATGGTGATGTGAATGAAGTGTCGGGGAATGATGATAGAAGGATTGTTACTGTGACTCCTTTGAGGGATATGAAGCCGGAGAGGATTTTCGGGAAGATGAGTCATTTGCAGAGGCTTTTGGATCGTTTCTTGGCTTGTAGGCCAACTGGGTTGGCTAAGAACAATAGGATGATTTTGATTGCATTGTATCCGTTGGTTAAGGAGAGTTTTCAGCTGTATGCTGATATATGCGAGGTTTTGGCAGTGTTGCTTGACAAATTCTTTGACATGGAGTATCCTGATTGTGTGAAGGCCTTTGATGCTTATGCAAGTGCTGCTAAACAGATTGATGAACTTGTGGCGTTTTACAATTGGTGTAAAGAAAGTGGTTTGGCGAGATCCTCCGAGTATCCGGAAGTTCAAAGAATTACTAGTAAGTTGTTGGAGACACTGGAGGAGTTTGTGAGGGATAGGGCTAAGAGGCCAAAGAGTCCAGAGAGGAAAGAGGAAGCTCCTAAGCTGGAAGTACAAGAGGAGGAGCCGGTTCAGGATATGAACGAGATCAAGGCACTGCCTGCACCTGAGAATTATACCCCGCCACCTCCACCAGAGCCTGAGCCTGAGCCAAAACCGCAGTTTACGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGACGATCAGGGTAATAGATTTGCGTTGGCACTCTTTGCTGGTGCACCGGCTAATAATAATGCAAATGGATCGTGGGAAGCCTTTCCATCAAATGGACAGCCGGAAGTAACTTCAGCTTGGCAAACCCCTGCAGCTGAACCTGGGAAAGCGGATTGGGAACTGGCATTGGTTGAGACAGCCAGCAATTTATCTAGGCAGAAGAATGCTTTAGGTGGTGGGCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTGAGCACTTCCCAACTTAGTGGAGGGAGTGCTAGCAGTGTGGCGTTGCCGGGACCGGGAAAGACCACAACACCTGTTTTAGCTCTCCCAGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGATCCGTTCGCCGCATCATTGAACATTCCACCTCCCTCCTATGTGCAAATGGCCGAAATGGAGAAGAAGCAACAATTACTTGTGCATGAGCAGCAGCTGTGGCATCAGTATGCAAGGGATGGGATGCAAGGCCAGTCTAGCTTGAACAAAATGAACAATGGTACTGGATACTATGCTGGGGGTCCTATGCCTTATGGAATGCCCCCAGTTCATGGAATGGGACCTCCAAACGGGGTTACAAGAGAGCAAGGCTCTTTTCATTGGTTCAAAGGAGTCATGAATGAAGTAGCTGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTAACTAGCGAGGAAGGAGATGCTAGATCTGCCCTTATCACCATAGTTCAAGCACTTAACCATGCCAAAAATGGAGTTGATATTGTTTCTGGAACCAGGGTACGGACACATTTTGCTAGGCCTAATAGGAAAAAGGTTTTCTCTAAAATGTGTTCCAAGCACGATAGTGGACGAATAGGTGTATTTTATTGTGGTGCGCCGGTTTTGGCCGAAGAACTTAATAAACTAGGCTTCGAGTTCAATGAAAAGGGTCCAACAAAATTTGAGTTCCACAAGGAGCATTTCTAA
Protein sequence

>Msa0476960

MTSSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYIREILNLMSYSRGYVNACVSAVSKRLGKTRDWIVALKALILVHRLMNDGTPIFQEEIMYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLELMLFDRKAGSVGGGGGGGDERFSGRENNFRSPPNEYEYGGGQFRGEGGMRKTRSYGDVNEVSGNDDRRIVTVTPLRDMKPERIFGKMSHLQRLLDRFLACRPTGLAKNNRMILIALYPLVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELVAFYNWCKESGLARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPKLEVQEEEPVQDMNEIKALPAPENYTPPPPPEPEPEPKPQFTEDLVNLREDAVTADDQGNRFALALFAGAPANNNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKNALGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLNIPPPSYVQMAEMEKKQQLLVHEQQLWHQYARDGMQGQSSLNKMNNGTGYYAGGPMPYGMPPVHGMGPPNGVTREQGSFHWFKGVMNEVAELDQRGVIEMHNYLTSEEGDARSALITIVQALNHAKNGVDIVSGTRVRTHFARPNRKKVFSKMCSKHDSGRIGVFYCGAPVLAEELNKLGFEFNEKGPTKFEFHKEHF*