AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1155150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155150 MtrunA17_Chr2g0326781 95.349 43 1 1 1 42 540 582 1.44e-21 86.7
Msa1155150 MtrunA17_Chr1g0199661 48.101 79 36 3 1 79 512 585 3.62e-15 68.6
Msa1155150 MtrunA17_Chr8g0388331 93.548 31 2 0 50 80 180 210 1.61e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1155150 AT2G28320.1 81.395 43 7 1 1 42 550 592 5.84e-18 76.6
Msa1155150 AT3G54800.2 69.767 43 12 1 1 42 547 589 9.73e-15 67.8
Msa1155150 AT3G54800.1 69.767 43 12 1 1 42 547 589 9.73e-15 67.8

Find 180 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCACCTTTAATTCTTTA+TGG 0.142489 7_4:+43002007 None:intergenic
GGGTGAGGATTGTAGAATTT+TGG 0.185252 7_4:+43002835 None:intergenic
CTGTATTGTGAAATCTTTAA+AGG 0.194309 7_4:-42997100 Msa1155150:five_prime_UTR
AGAGTAGAAGAAATGGAATT+AGG 0.203623 7_4:-43002143 Msa1155150:five_prime_UTR
CTCTGGTGTGGTTCTTATAT+TGG 0.220904 7_4:+42999340 None:intergenic
AGCAATATGGTGAAAGAAAA+TGG 0.245087 7_4:-43000569 Msa1155150:five_prime_UTR
AGCACATTCTTAAAGTATTC+CGG 0.250747 7_4:+42997214 None:intergenic
ATAAAAGAAGCTTGCAGTTC+TGG 0.264689 7_4:+43001266 None:intergenic
GGGCAGCCGCGGCAAATGTC+TGG 0.287615 7_4:+42999259 None:intergenic
CCATCACCATAAAGAATTAA+AGG 0.295001 7_4:-43002013 Msa1155150:intron
AAAGATTGAAGGATGGGGTT+AGG 0.296600 7_4:+43002702 None:intergenic
TGTGAGAAGAATGTTAAGTT+TGG 0.298831 7_4:-43002205 Msa1155150:five_prime_UTR
GAGTAGAAGAAATGGAATTA+GGG 0.301865 7_4:-43002142 Msa1155150:five_prime_UTR
TATACCAAAGTTCCCTTTCC+CGG 0.312780 7_4:-42997233 Msa1155150:five_prime_UTR
GAATGTTAAGTTTGGGTAAG+AGG 0.323759 7_4:-43002197 Msa1155150:five_prime_UTR
TTTATTGCAGCAGTTGATAA+AGG 0.324523 7_4:-43001248 Msa1155150:five_prime_UTR
TAAACAAATTATGAGGCTTC+AGG 0.348456 7_4:-42998328 Msa1155150:five_prime_UTR
TGCCAACATAGTGAATAAAA+AGG 0.349046 7_4:-43001211 Msa1155150:intron
CTTACTATTGCATGACAAAC+TGG 0.357680 7_4:-42998259 Msa1155150:five_prime_UTR
AGGGAGAAGAGTAGAAGAAA+TGG 0.359832 7_4:-43002150 Msa1155150:five_prime_UTR
GATGATCTTGGTGGCCGTCC+TGG 0.359921 7_4:-42996956 Msa1155150:CDS
AGCAAATAGATAAGTGGTTA+AGG 0.372183 7_4:+42997027 None:intergenic
ATTCTGAAGCGTGTAGAAAA+AGG 0.373678 7_4:-43000853 Msa1155150:five_prime_UTR
GGAGGAAGAAGAACGGGAAC+GGG 0.374447 7_4:-43002395 Msa1155150:five_prime_UTR
TCGATGAAAGTATCCATATC+AGG 0.376038 7_4:+42997639 None:intergenic
GTGAGAAGAATGTTAAGTTT+GGG 0.387565 7_4:-43002204 Msa1155150:five_prime_UTR
AGTCTGGCTGATACCTGATA+TGG 0.388600 7_4:-42997652 Msa1155150:five_prime_UTR
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 7_4:-43000543 Msa1155150:five_prime_UTR
GCACATTCTTAAAGTATTCC+GGG 0.394693 7_4:+42997215 None:intergenic
CATCGCACCTGATATGTCTT+TGG 0.395784 7_4:+42997579 None:intergenic
AGAAGAACGGGAACGGGAAA+GGG 0.396624 7_4:-43002389 Msa1155150:five_prime_UTR
CATGACAAACTGGTGGATAC+TGG 0.399287 7_4:-42998249 Msa1155150:five_prime_UTR
AAGATTGAAGGATGGGGTTA+GGG 0.404052 7_4:+43002703 None:intergenic
ATGCATGCATGACTTTAGAT+TGG 0.411318 7_4:+43002302 None:intergenic
ACTACATCCTCGAGTTTAAT+CGG 0.412521 7_4:+42999369 None:intergenic
AAAGAAACCTACTTTAGATA+TGG 0.414269 7_4:+42996706 None:intergenic
GATGGGGTTAGGGTTCAGTT+TGG 0.416945 7_4:+43002713 None:intergenic
CTTTGCCTAATTAAAATCAA+TGG 0.418036 7_4:-42996181 Msa1155150:three_prime_UTR
ATGGTGATGGCAGCAAGCTC+TGG 0.418206 7_4:+43002026 None:intergenic
TGTGATAGATAGATTGTTGA+AGG 0.421191 7_4:-43002509 Msa1155150:intron
TTGAAGATCAATGCACTTGA+AGG 0.424310 7_4:-42996341 Msa1155150:three_prime_UTR
GCCTGTCAGGGATATAACTA+TGG 0.426019 7_4:-42996415 Msa1155150:intron
AAAAGGACCAAAGACATATC+AGG 0.426577 7_4:-42997586 Msa1155150:five_prime_UTR
AAAAGGGGAGAAACGGGAAC+GGG 0.427372 7_4:-43002416 Msa1155150:five_prime_UTR
TAGTTTCTTTGATCATTCAT+TGG 0.431004 7_4:+42996098 None:intergenic
CTGTTACTTGACAGGGATGT+TGG 0.431891 7_4:-43000895 Msa1155150:intron
TCTTTCAATTCATTCATTCC+AGG 0.434263 7_4:-43002684 Msa1155150:intron
TTCCTCCCTCTCTTCTCTCA+CGG 0.434765 7_4:-43002907 Msa1155150:five_prime_UTR
AGATGGAAGCTAGGAACTTA+AGG 0.437958 7_4:-43002060 Msa1155150:five_prime_UTR
ATCAGGTGACTGGTATATAC+AGG 0.439760 7_4:-42998127 Msa1155150:intron
GTCTGGGTTAAGCTGTCCTT+TGG 0.440910 7_4:+42999276 None:intergenic
TTGTAATTGTATATAACCTT+AGG 0.442094 7_4:-42996218 Msa1155150:three_prime_UTR
ATCTGTAGAAGTAAAGTGAT+AGG 0.442218 7_4:-43002573 Msa1155150:intron
TTACTGATAAACAAATTATG+AGG 0.445606 7_4:-42998335 Msa1155150:five_prime_UTR
AAGAAGAACGGGAACGGGAA+AGG 0.451694 7_4:-43002390 Msa1155150:five_prime_UTR
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 7_4:-43000538 Msa1155150:five_prime_UTR
CATAAAAGCAAATAGATAAG+TGG 0.452901 7_4:+42997021 None:intergenic
TCATCGAATATGCAATTTCA+AGG 0.456985 7_4:-42997174 Msa1155150:five_prime_UTR
GAGAGATGGGAGGAAGAAAG+TGG 0.460016 7_4:+43002881 None:intergenic
ATGATCTTGGTGGCCGTCCT+GGG 0.462970 7_4:-42996955 Msa1155150:CDS
CCTTTAATTCTTTATGGTGA+TGG 0.463086 7_4:+43002013 None:intergenic
GGGTTCAGTTTGGACAGAAC+TGG 0.463654 7_4:+43002723 None:intergenic
TGGATATGCAACACCTCCTC+TGG 0.463674 7_4:+42999323 None:intergenic
CTCGGTGTGCAAAACAAAGT+TGG 0.468884 7_4:+42996386 None:intergenic
CATGCATGCATAATTCTCTC+TGG 0.470583 7_4:-43002290 Msa1155150:five_prime_UTR
GCAATATGGTGAAAGAAAAT+GGG 0.474578 7_4:-43000568 Msa1155150:five_prime_UTR
GGAACGGGAGGAAGAAGAAC+GGG 0.475533 7_4:-43002401 Msa1155150:five_prime_UTR
CCTCCCTCAGGTATCTCGTC+AGG 0.476130 7_4:+42998300 None:intergenic
ATGATTAAAGGAAACTGATA+AGG 0.479594 7_4:-43000599 Msa1155150:intron
TCTTCCTCCCATCTCTCTCT+CGG 0.480316 7_4:-43002875 Msa1155150:five_prime_UTR
ATCGAAAATTTAAACAGCGT+TGG 0.484696 7_4:-42997621 Msa1155150:five_prime_UTR
AATGTTAAGTTTGGGTAAGA+GGG 0.484956 7_4:-43002196 Msa1155150:five_prime_UTR
TTCTTAAAGTATTCCGGGAA+AGG 0.486184 7_4:+42997220 None:intergenic
TCTTAAAGTATTCCGGGAAA+GGG 0.490143 7_4:+42997221 None:intergenic
ATAAGGTTGGTGAAGCAATA+TGG 0.490665 7_4:-43000582 Msa1155150:five_prime_UTR
GTCATGATCTTAAGAAAAGA+AGG 0.490748 7_4:+42996733 None:intergenic
CTTCATAGATAATGCAAGAT+GGG 0.490793 7_4:-42999235 Msa1155150:five_prime_UTR
CTTGCAGAAATATGCAGCAC+AGG 0.492843 7_4:-42996809 Msa1155150:intron
TCGGTGTGCAAAACAAAGTT+GGG 0.496240 7_4:+42996387 None:intergenic
CAGAACTGGAAGAGGAGAAA+AGG 0.497959 7_4:+43002737 None:intergenic
CATCGAATATGCAATTTCAA+GGG 0.504570 7_4:-42997173 Msa1155150:five_prime_UTR
TATTCCGGGAAAGGGAACTT+TGG 0.505318 7_4:+42997229 None:intergenic
GACAGAAGGGAAGATGATCT+TGG 0.506460 7_4:-42996968 Msa1155150:CDS
TGAGGTCGAGAGTGAGGCAG+AGG 0.506694 7_4:-43002170 Msa1155150:five_prime_UTR
GAGCCAGTCGTCTAGGTCAA+GGG 0.508608 7_4:-42997357 Msa1155150:five_prime_UTR
GAGAGGGCCGAGAGAGAGAT+GGG 0.510742 7_4:+43002868 None:intergenic
TGCAAATGGTTGCTGCAGAT+TGG 0.511099 7_4:-42997000 Msa1155150:CDS
GACTTAACAGTTCTCTGAGT+TGG 0.513256 7_4:+42998083 None:intergenic
GAATTGAAAGATTGAAGGAT+GGG 0.513980 7_4:+43002696 None:intergenic
TTAAGAAAAGAAGGATTCAA+AGG 0.515731 7_4:+42996742 None:intergenic
GGGAACTTTGGTATAAGATA+AGG 0.516378 7_4:+42997241 None:intergenic
CCGTCCTGGGAGCATTATGC+AGG 0.517123 7_4:-42996942 Msa1155150:intron
GGGAGGAAGAAGAACGGGAA+CGG 0.518287 7_4:-43002396 Msa1155150:five_prime_UTR
AGGGGAGAAACGGGAACGGG+AGG 0.518667 7_4:-43002413 Msa1155150:five_prime_UTR
TAGATAATGCAAGATGGGAT+GGG 0.518772 7_4:-42999230 Msa1155150:five_prime_UTR
CTGGTGGATACTGGAAAGCC+AGG 0.518819 7_4:-42998240 Msa1155150:five_prime_UTR
GGCAGCCGCGGCAAATGTCT+GGG 0.520346 7_4:+42999260 None:intergenic
GTGTGAGGCGTTCCTCCCTC+AGG 0.520495 7_4:+42998288 None:intergenic
ATCTATGAAGTGGGCAGCCG+CGG 0.523740 7_4:+42999248 None:intergenic
CAAGACTGAGTAATTGGAGA+TGG 0.523833 7_4:-43002077 Msa1155150:five_prime_UTR
TTTGTTGTACATCAGGTGAC+TGG 0.533031 7_4:-42998137 Msa1155150:intron
AGTTTGGACAGAACTGGAAG+AGG 0.533720 7_4:+43002729 None:intergenic
GGAGCCAGTCGTCTAGGTCA+AGG 0.534034 7_4:-42997358 Msa1155150:five_prime_UTR
TAAGAAAAGAAGGATTCAAA+GGG 0.534209 7_4:+42996743 None:intergenic
AGGCAACTTATAATTGCCTA+AGG 0.535020 7_4:+42996202 None:intergenic
TTAAAGGAAACTGATAAGGT+TGG 0.535969 7_4:-43000595 Msa1155150:intron
TCTATAGCTGCAAATTGAAG+TGG 0.536075 7_4:+42996251 None:intergenic
TATTATCCTCTTTGTACTCA+CGG 0.536920 7_4:-42997379 Msa1155150:five_prime_UTR
TGAGAGGGCCGAGAGAGAGA+TGG 0.538073 7_4:+43002867 None:intergenic
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 7_4:-43000539 Msa1155150:five_prime_UTR
CTCACCTCAACTCTGTCACC+TGG 0.549979 7_4:+42998222 None:intergenic
ATCTTGCATTATCTATGAAG+TGG 0.550073 7_4:+42999238 None:intergenic
ATAGATAATGCAAGATGGGA+TGG 0.550173 7_4:-42999231 Msa1155150:five_prime_UTR
TGGAAACCGTGAGAGAAGAG+AGG 0.550585 7_4:+43002901 None:intergenic
GTTTGATTGAAAATTTGTGA+TGG 0.551248 7_4:-43002231 Msa1155150:five_prime_UTR
GGGGATCAGTCAACAGAAAG+AGG 0.551550 7_4:-42997836 Msa1155150:five_prime_UTR
TGAATGAATTGAAAGATTGA+AGG 0.554429 7_4:+43002691 None:intergenic
TCTAATTCTAATCTTGCATG+TGG 0.554519 7_4:-43002254 Msa1155150:five_prime_UTR
TGAATTGAAAGATTGAAGGA+TGG 0.556558 7_4:+43002695 None:intergenic
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 7_4:-43000534 Msa1155150:five_prime_UTR
ACTCACGGAGCCAGTCGTCT+AGG 0.565978 7_4:-42997364 Msa1155150:five_prime_UTR
AAAGTGATAGGAGAAGTTGC+TGG 0.567098 7_4:-43002561 Msa1155150:five_prime_UTR
AGAAATATGCAGCACAGGGT+GGG 0.567302 7_4:-42996804 Msa1155150:CDS
GGGATCTGAGGTCGAGAGTG+AGG 0.568002 7_4:-43002176 Msa1155150:five_prime_UTR
TCTTAATAAGCAATCAGAGC+TGG 0.569488 7_4:-42997794 Msa1155150:five_prime_UTR
AGCCCCTTGACCTAGACGAC+TGG 0.570287 7_4:+42997354 None:intergenic
TTGATGATTAATTCATCATG+AGG 0.570775 7_4:+43002772 None:intergenic
ATGCAACACCTCCTCTGGTG+TGG 0.571539 7_4:+42999328 None:intergenic
TGATGATTAATTCATCATGA+GGG 0.577106 7_4:+43002773 None:intergenic
AGTAATTGGAGATGGAAGCT+AGG 0.578447 7_4:-43002069 Msa1155150:five_prime_UTR
GGAAACCGTGAGAGAAGAGA+GGG 0.579709 7_4:+43002902 None:intergenic
CTAATTCTAATCTTGCATGT+GGG 0.583551 7_4:-43002253 Msa1155150:five_prime_UTR
ACTTCATAGATAATGCAAGA+TGG 0.584523 7_4:-42999236 Msa1155150:five_prime_UTR
GGGAACGGGAGGAAGAAGAA+CGG 0.587711 7_4:-43002402 Msa1155150:five_prime_UTR
AATTGAAAGATTGAAGGATG+GGG 0.589629 7_4:+43002697 None:intergenic
ATTGGTTGAGATCTGACAGA+AGG 0.589843 7_4:-42996982 Msa1155150:CDS
CAGAAATATGCAGCACAGGG+TGG 0.591099 7_4:-42996805 Msa1155150:CDS
AAAGAAGCTTGCAGTTCTGG+AGG 0.598501 7_4:+43001269 None:intergenic
GTGATAGGAGAAGTTGCTGG+TGG 0.599516 7_4:-43002558 Msa1155150:five_prime_UTR
AGATAATGCAAGATGGGATG+GGG 0.599941 7_4:-42999229 Msa1155150:five_prime_UTR
TTGGTTGAGATCTGACAGAA+GGG 0.602460 7_4:-42996981 Msa1155150:CDS
TCAAACAAACCTCTATAGAG+TGG 0.603888 7_4:+42997543 None:intergenic
GAGGTCGAGAGTGAGGCAGA+GGG 0.604687 7_4:-43002169 Msa1155150:five_prime_UTR
TGATGACAAAACTGTACCAA+AGG 0.605343 7_4:-42999292 Msa1155150:five_prime_UTR
TGGGAAATCTCTATTCATGA+AGG 0.608432 7_4:-43002538 Msa1155150:five_prime_UTR
AACCGTGAGAGAAGAGAGGG+AGG 0.614711 7_4:+43002905 None:intergenic
CTTTAACAAGATCATTCAAG+CGG 0.617914 7_4:-43000465 Msa1155150:five_prime_UTR
AGCCAGTCGTCTAGGTCAAG+GGG 0.618083 7_4:-42997356 Msa1155150:five_prime_UTR
TCAACCTGCATAATGCTCCC+AGG 0.618526 7_4:+42996938 None:intergenic
TGATAGGAGAAGTTGCTGGT+GGG 0.619992 7_4:-43002557 Msa1155150:five_prime_UTR
TCTTGCATTATCTATGAAGT+GGG 0.621537 7_4:+42999239 None:intergenic
TGATCTTGTTAAAGCAGCTG+AGG 0.629746 7_4:+43000474 None:intergenic
ATCGAATATGCAATTTCAAG+GGG 0.629980 7_4:-42997172 Msa1155150:five_prime_UTR
TATAAGAACCACACCAGAGG+AGG 0.636996 7_4:-42999336 Msa1155150:five_prime_UTR
GAGGAAGAGTAAGAGAGAGA+CGG 0.641334 7_4:-43002331 Msa1155150:five_prime_UTR
AAAGCCAGGTGACAGAGTTG+AGG 0.641668 7_4:-42998226 Msa1155150:intron
TTGTTGCTAATCTTCCACCT+CGG 0.643102 7_4:+42996368 None:intergenic
ACTATTGCATGACAAACTGG+TGG 0.645480 7_4:-42998256 Msa1155150:five_prime_UTR
ATACAGGGCTATGAATGTCA+AGG 0.646972 7_4:-42998111 Msa1155150:five_prime_UTR
TATGAGACCGATTAAACTCG+AGG 0.649881 7_4:-42999376 Msa1155150:five_prime_UTR
TTGCAGAAATATGCAGCACA+GGG 0.650088 7_4:-42996808 Msa1155150:intron
CCTGCATAATGCTCCCAGGA+CGG 0.650448 7_4:+42996942 None:intergenic
GCAAGCAGTGTAGAGAGCGA+TGG 0.650454 7_4:-43000512 Msa1155150:five_prime_UTR
GTTTGGGTAAGAGGGATCTG+AGG 0.652283 7_4:-43002188 Msa1155150:five_prime_UTR
GGAAAGGGCCGTCACAACTG+CGG 0.659297 7_4:-43002374 Msa1155150:five_prime_UTR
CAGGGCTATGAATGTCAAGG+TGG 0.661008 7_4:-42998108 Msa1155150:five_prime_UTR
TCAGGTGACTGGTATATACA+GGG 0.661864 7_4:-42998126 Msa1155150:intron
AATAGTAAGCTAACAGTGTG+AGG 0.667908 7_4:+42998273 None:intergenic
GGAAAGCATTACACACCAAG+AGG 0.670420 7_4:-42999185 Msa1155150:intron
TCTCTCTTACTCTTCCTCAC+CGG 0.671004 7_4:+43002336 None:intergenic
AGGGCTATGAATGTCAAGGT+GGG 0.671069 7_4:-42998107 Msa1155150:five_prime_UTR
AGAAGGGAAGATGATCTTGG+TGG 0.671197 7_4:-42996965 Msa1155150:CDS
CAATATAAGAACCACACCAG+AGG 0.676256 7_4:-42999339 Msa1155150:five_prime_UTR
CTTAACCCAGACATTTGCCG+CGG 0.676329 7_4:-42999265 Msa1155150:five_prime_UTR
CTGGCTCCGTGAGTACAAAG+AGG 0.684019 7_4:+42997373 None:intergenic
GACACCTGACGAGATACCTG+AGG 0.684151 7_4:-42998304 Msa1155150:five_prime_UTR
ACACCTGACGAGATACCTGA+GGG 0.690721 7_4:-42998303 Msa1155150:five_prime_UTR
ATTCAAGCGGTATCTGACTG+AGG 0.705680 7_4:-43000452 Msa1155150:five_prime_UTR
AGGGCCGAGAGAGAGATGGG+AGG 0.706364 7_4:+43002871 None:intergenic
CCTGACGAGATACCTGAGGG+AGG 0.736290 7_4:-42998300 Msa1155150:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTGAAATTGATAATTTT+AGG - chr7_4:42996401-42996420 Msa1155150:CDS 15.0%
!!! ATTTTTGTTTTGTTTTGTTT+TGG - chr7_4:42996564-42996583 Msa1155150:intron 15.0%
!! AAGTAACTAAAGAAAAATTA+GGG - chr7_4:42996917-42996936 Msa1155150:intron 15.0%
!! TAATCTAAATCAACTAATTT+AGG - chr7_4:42997062-42997081 Msa1155150:five_prime_UTR 15.0%
!! AATCTAAATCAACTAATTTA+GGG - chr7_4:42997063-42997082 Msa1155150:five_prime_UTR 15.0%
!! ATTCTTATTGTATATGAAAA+AGG - chr7_4:42997280-42997299 Msa1155150:five_prime_UTR 15.0%
!!! ATTGATTTTGAATTTTTAGA+CGG - chr7_4:42997378-42997397 Msa1155150:five_prime_UTR 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG - chr7_4:42999324-42999343 Msa1155150:five_prime_UTR 15.0%
!!! ATTTAAAACAGATGAATTAA+AGG + chr7_4:42999566-42999585 None:intergenic 15.0%
!!! TTCTTATTTTATATCAAATG+AGG + chr7_4:43000119-43000138 None:intergenic 15.0%
!!! TTTTTTTTTGCTAAATTAGA+CGG - chr7_4:43000407-43000426 Msa1155150:intron 15.0%
!! AATAATTATTTAAACTGTAC+TGG - chr7_4:43000506-43000525 Msa1155150:five_prime_UTR 15.0%
!! ATAATTATTTAAACTGTACT+GGG - chr7_4:43000507-43000526 Msa1155150:five_prime_UTR 15.0%
!! ATCAATATATTTATCATACA+GGG + chr7_4:43001134-43001153 None:intergenic 15.0%
!! ATATATAAGTAATTACTTGA+TGG + chr7_4:43002147-43002166 None:intergenic 15.0%
!! TTCATAGCTATTATTATATT+TGG - chr7_4:43002509-43002528 Msa1155150:intron 15.0%
!! TTTAATTAAACCTAATTACC+TGG + chr7_4:42996359-42996378 None:intergenic 20.0%
!! TTTCAGTAAAACAAATCAAA+AGG + chr7_4:42996390-42996409 None:intergenic 20.0%
!! TGTGAAAAGAAAGAAAAAAA+AGG - chr7_4:42996589-42996608 Msa1155150:intron 20.0%
!! GTGAAAAGAAAGAAAAAAAA+GGG - chr7_4:42996590-42996609 Msa1155150:intron 20.0%
!! TGAAAAGAAAGAAAAAAAAG+GGG - chr7_4:42996591-42996610 Msa1155150:intron 20.0%
!! GAAGTAACTAAAGAAAAATT+AGG - chr7_4:42996916-42996935 Msa1155150:intron 20.0%
!! AGTAACTAAAGAAAAATTAG+GGG - chr7_4:42996918-42996937 Msa1155150:intron 20.0%
!! ATCTAAATCAACTAATTTAG+GGG - chr7_4:42997064-42997083 Msa1155150:five_prime_UTR 20.0%
!!! TTGATTTTGAATTTTTAGAC+GGG - chr7_4:42997379-42997398 Msa1155150:five_prime_UTR 20.0%
!! GAAATTGATTACTTTGAATT+TGG - chr7_4:42997552-42997571 Msa1155150:intron 20.0%
!! ATTACTTTGAATTTGGATAT+GGG - chr7_4:42997559-42997578 Msa1155150:five_prime_UTR 20.0%
!!! ATCTAAGATTTGATATGTTA+TGG - chr7_4:42997847-42997866 Msa1155150:intron 20.0%
!! ATATTTGTTTATACGCTTAA+AGG + chr7_4:42997927-42997946 None:intergenic 20.0%
!! CAAAATAAAAAAAAGTGACA+GGG + chr7_4:42998095-42998114 None:intergenic 20.0%
!! TCAAAATAAAAAAAAGTGAC+AGG + chr7_4:42998096-42998115 None:intergenic 20.0%
!!! AATGATTTTCTTGATTACTA+AGG - chr7_4:42998232-42998251 Msa1155150:five_prime_UTR 20.0%
!! TTATTTGGTATGATGATTAA+AGG - chr7_4:42998411-42998430 Msa1155150:intron 20.0%
!!! TCTATTTTCATAAGCTATAT+TGG - chr7_4:42998745-42998764 Msa1155150:intron 20.0%
!!! GTAAAGTGCTTTATTTAAAA+TGG - chr7_4:42998922-42998941 Msa1155150:intron 20.0%
!! CAAAAATTAGATTTGAGAAT+CGG + chr7_4:42999010-42999029 None:intergenic 20.0%
!!! CACTTTTTATGATCTTAAAA+TGG - chr7_4:42999136-42999155 Msa1155150:intron 20.0%
!!! TTTCTACTTATATTTAAGGT+CGG + chr7_4:42999380-42999399 None:intergenic 20.0%
!! AACCTTTCTACTTATATTTA+AGG + chr7_4:42999384-42999403 None:intergenic 20.0%
!!! GATACTTTATTTAGTACAAA+AGG + chr7_4:42999982-43000001 None:intergenic 20.0%
!! TTGACTTTGATGTTATATAT+TGG + chr7_4:43000006-43000025 None:intergenic 20.0%
!!! AGATTTTTAAGTATTTGAGA+TGG - chr7_4:43000291-43000310 Msa1155150:intron 20.0%
!! AAAACACATTGTTCAAAATA+GGG + chr7_4:43000575-43000594 None:intergenic 20.0%
!!! AACATATCTTTTCTAATTTC+AGG - chr7_4:43000663-43000682 Msa1155150:intron 20.0%
!! TTACTGATAAACAAATTATG+AGG - chr7_4:43000687-43000706 Msa1155150:intron 20.0%
!! CATCAATATATTTATCATAC+AGG + chr7_4:43001135-43001154 None:intergenic 20.0%
!! ATAAATATATTGATGAGCAT+GGG - chr7_4:43001140-43001159 Msa1155150:intron 20.0%
!!! TATGTGTTGTTTAATTTTTC+AGG - chr7_4:43001339-43001358 Msa1155150:intron 20.0%
!!! GAAGAAAGGTTTTAAAATTT+TGG - chr7_4:43001590-43001609 Msa1155150:intron 20.0%
!! AAATCCATGATTTACTAAAA+AGG + chr7_4:43002390-43002409 None:intergenic 20.0%
!! TTAACAGTAAAAGATTAGAA+TGG + chr7_4:43002550-43002569 None:intergenic 20.0%
!! TTGTAATTGTATATAACCTT+AGG - chr7_4:43002804-43002823 Msa1155150:five_prime_UTR 20.0%
!!! TGAATCCATTGATTTTAATT+AGG + chr7_4:43002849-43002868 None:intergenic 20.0%
!!! CATATCAATTTTTCTTAACT+GGG + chr7_4:43002904-43002923 None:intergenic 20.0%
! TGATGATTAATTCATCATGA+GGG + chr7_4:42996252-42996271 None:intergenic 25.0%
!! TTGATGATTAATTCATCATG+AGG + chr7_4:42996253-42996272 None:intergenic 25.0%
! TGAATGAATTGAAAGATTGA+AGG + chr7_4:42996334-42996353 None:intergenic 25.0%
! GTTTGATTGAAAATTTGTGA+TGG - chr7_4:42996791-42996810 Msa1155150:CDS 25.0%
! TTGATTTAGATTATGCATGA+GGG + chr7_4:42997055-42997074 None:intergenic 25.0%
! ATTCAATCAAATTATTCCAG+TGG + chr7_4:42997242-42997261 None:intergenic 25.0%
! ACTGGAATAATTTGATTGAA+TGG - chr7_4:42997241-42997260 Msa1155150:five_prime_UTR 25.0%
! CTGGAATAATTTGATTGAAT+GGG - chr7_4:42997242-42997261 Msa1155150:five_prime_UTR 25.0%
!!! ATTTGATTGAATGGGTTTTA+TGG - chr7_4:42997250-42997269 Msa1155150:five_prime_UTR 25.0%
! CATATGAATGATTCAATCAT+AGG - chr7_4:42997468-42997487 Msa1155150:intron 25.0%
!! TGATTCAATCATAGGTTTTA+TGG - chr7_4:42997476-42997495 Msa1155150:intron 25.0%
! GATTACTTTGAATTTGGATA+TGG - chr7_4:42997558-42997577 Msa1155150:five_prime_UTR 25.0%
! ATTGAGTGAATTATATGTTC+AGG - chr7_4:42997728-42997747 Msa1155150:intron 25.0%
!! AACCTTTTTATTCACTATGT+TGG + chr7_4:42997816-42997835 None:intergenic 25.0%
!! TCAAGAAAATCATTCTTTTG+AGG + chr7_4:42998226-42998245 None:intergenic 25.0%
!!! TTTGTTTTGTTGTTTGATTG+TGG - chr7_4:42998296-42998315 Msa1155150:five_prime_UTR 25.0%
! ATGATTAAAGGAAACTGATA+AGG - chr7_4:42998423-42998442 Msa1155150:intron 25.0%
! ACTTATATGATAAGTGTGAA+TGG + chr7_4:42998657-42998676 None:intergenic 25.0%
! GACCTTAAATATAAGTAGAA+AGG - chr7_4:42999379-42999398 Msa1155150:five_prime_UTR 25.0%
!! ACAAATACATGTACCTTTTT+CGG - chr7_4:42999416-42999435 Msa1155150:intron 25.0%
! ACTTTCTTCTCAAAATCATT+TGG - chr7_4:42999492-42999511 Msa1155150:intron 25.0%
! CTTTCTTCTCAAAATCATTT+GGG - chr7_4:42999493-42999512 Msa1155150:intron 25.0%
! ATAACATCAAAGTCAATAGT+AGG - chr7_4:43000010-43000029 Msa1155150:intron 25.0%
!! TCTCAATGACTACAAAATTT+TGG - chr7_4:43000079-43000098 Msa1155150:intron 25.0%
!!! CTTGTTATTATGCATCATAT+AGG + chr7_4:43000261-43000280 None:intergenic 25.0%
! TAAAAGAGATGGGAAAATAT+TGG + chr7_4:43000324-43000343 None:intergenic 25.0%
! AAACACATTGTTCAAAATAG+GGG + chr7_4:43000574-43000593 None:intergenic 25.0%
! CAAAACACATTGTTCAAAAT+AGG + chr7_4:43000576-43000595 None:intergenic 25.0%
!!! CTATTTTGAACAATGTGTTT+TGG - chr7_4:43000574-43000593 Msa1155150:five_prime_UTR 25.0%
!!! TGGATTTTAGTTCATAAACA+TGG - chr7_4:43000629-43000648 Msa1155150:intron 25.0%
! ATATTCTCATGTTTGTTCAA+TGG - chr7_4:43000850-43000869 Msa1155150:five_prime_UTR 25.0%
! GATTCATTTCATTGTTCTAA+AGG - chr7_4:43001081-43001100 Msa1155150:intron 25.0%
! GATAAATATATTGATGAGCA+TGG - chr7_4:43001139-43001158 Msa1155150:intron 25.0%
! TAAATATATTGATGAGCATG+GGG - chr7_4:43001141-43001160 Msa1155150:intron 25.0%
! TGTTTAAGAATCCGAAAAAA+GGG - chr7_4:43001754-43001773 Msa1155150:intron 25.0%
! CTGTATTGTGAAATCTTTAA+AGG - chr7_4:43001922-43001941 Msa1155150:intron 25.0%
! GAAAAAAATCTGATTGGTAA+AGG + chr7_4:43001956-43001975 None:intergenic 25.0%
! GTGAATGAAAAAAATCTGAT+TGG + chr7_4:43001962-43001981 None:intergenic 25.0%
! CATAAAAGCAAATAGATAAG+TGG + chr7_4:43002004-43002023 None:intergenic 25.0%
!!! TCTATTTGCTTTTATGCAAA+TGG - chr7_4:43002008-43002027 Msa1155150:intron 25.0%
! ATGTTTACAATGAAAAACTC+AGG + chr7_4:43002244-43002263 None:intergenic 25.0%
!! TTTTTCATTGTAAACATCTG+TGG - chr7_4:43002247-43002266 Msa1155150:five_prime_UTR 25.0%
! TAAGAAAAGAAGGATTCAAA+GGG + chr7_4:43002282-43002301 None:intergenic 25.0%
! TTAAGAAAAGAAGGATTCAA+AGG + chr7_4:43002283-43002302 None:intergenic 25.0%
! AAAGAAACCTACTTTAGATA+TGG + chr7_4:43002319-43002338 None:intergenic 25.0%
!!! CTTTCCTTTTTAGTAAATCA+TGG - chr7_4:43002383-43002402 Msa1155150:five_prime_UTR 25.0%
! TTAATCATGAAATTGCAAGT+TGG - chr7_4:43002408-43002427 Msa1155150:five_prime_UTR 25.0%
!!! CTTTGAAATTGGCATAATTT+CGG - chr7_4:43002442-43002461 Msa1155150:intron 25.0%
! AATTAATCAAAGTTCTCAAG+TGG - chr7_4:43002471-43002490 Msa1155150:intron 25.0%
!!! CATTGATTTTAATTAGGCAA+AGG + chr7_4:43002843-43002862 None:intergenic 25.0%
! CTTTGCCTAATTAAAATCAA+TGG - chr7_4:43002841-43002860 Msa1155150:five_prime_UTR 25.0%
!! GCATATCAATTTTTCTTAAC+TGG + chr7_4:43002905-43002924 None:intergenic 25.0%
! TTTGCATGATGATTTTCATG+GGG + chr7_4:42996216-42996235 None:intergenic 30.0%
! GTTTGCATGATGATTTTCAT+GGG + chr7_4:42996217-42996236 None:intergenic 30.0%
! AGTTTGCATGATGATTTTCA+TGG + chr7_4:42996218-42996237 None:intergenic 30.0%
AATTGAAAGATTGAAGGATG+GGG + chr7_4:42996328-42996347 None:intergenic 30.0%
GAATTGAAAGATTGAAGGAT+GGG + chr7_4:42996329-42996348 None:intergenic 30.0%
TGAATTGAAAGATTGAAGGA+TGG + chr7_4:42996330-42996349 None:intergenic 30.0%
TCTTTCAATTCATTCATTCC+AGG - chr7_4:42996338-42996357 Msa1155150:three_prime_UTR 30.0%
TTCATTCATTCCAGGTAATT+AGG - chr7_4:42996346-42996365 Msa1155150:three_prime_UTR 30.0%
!!! AGGTTTGATGCTTTTGATTT+TGG - chr7_4:42996421-42996440 Msa1155150:intron 30.0%
ATCTGTAGAAGTAAAGTGAT+AGG - chr7_4:42996449-42996468 Msa1155150:intron 30.0%
TGTGATAGATAGATTGTTGA+AGG - chr7_4:42996513-42996532 Msa1155150:intron 30.0%
AAGAAAAAAAAGGGGAGAAA+CGG - chr7_4:42996599-42996618 Msa1155150:intron 30.0%
TCTAATTCTAATCTTGCATG+TGG - chr7_4:42996768-42996787 Msa1155150:CDS 30.0%
CTAATTCTAATCTTGCATGT+GGG - chr7_4:42996769-42996788 Msa1155150:CDS 30.0%
TGTGAGAAGAATGTTAAGTT+TGG - chr7_4:42996817-42996836 Msa1155150:intron 30.0%
GTGAGAAGAATGTTAAGTTT+GGG - chr7_4:42996818-42996837 Msa1155150:intron 30.0%
AATGTTAAGTTTGGGTAAGA+GGG - chr7_4:42996826-42996845 Msa1155150:intron 30.0%
AGAGTAGAAGAAATGGAATT+AGG - chr7_4:42996879-42996898 Msa1155150:intron 30.0%
GAGTAGAAGAAATGGAATTA+GGG - chr7_4:42996880-42996899 Msa1155150:intron 30.0%
CCTTTAATTCTTTATGGTGA+TGG + chr7_4:42997012-42997031 None:intergenic 30.0%
CCATCACCATAAAGAATTAA+AGG - chr7_4:42997009-42997028 Msa1155150:exon 30.0%
TCACCATAAAGAATTAAAGG+TGG - chr7_4:42997012-42997031 Msa1155150:exon 30.0%
CACCATAAAGAATTAAAGGT+GGG - chr7_4:42997013-42997032 Msa1155150:exon 30.0%
AACCCACCTTTAATTCTTTA+TGG + chr7_4:42997018-42997037 None:intergenic 30.0%
! GTTGATTTAGATTATGCATG+AGG + chr7_4:42997056-42997075 None:intergenic 30.0%
TGAATGATAGCATGATTGAA+AGG - chr7_4:42997203-42997222 Msa1155150:five_prime_UTR 30.0%
GGAGATTATAAAAATGAGCT+AGG - chr7_4:42997301-42997320 Msa1155150:five_prime_UTR 30.0%
!! TTTATTGCAGCAGTTGATAA+AGG - chr7_4:42997774-42997793 Msa1155150:five_prime_UTR 30.0%
TGCCAACATAGTGAATAAAA+AGG - chr7_4:42997811-42997830 Msa1155150:five_prime_UTR 30.0%
!! AATGTTTTCTGTTACTTGAC+AGG - chr7_4:42998119-42998138 Msa1155150:five_prime_UTR 30.0%
!! ATGTTTTCTGTTACTTGACA+GGG - chr7_4:42998120-42998139 Msa1155150:five_prime_UTR 30.0%
!!! TTGTTGTTTGATTGTGGTTT+TGG - chr7_4:42998302-42998321 Msa1155150:five_prime_UTR 30.0%
TTAAAGGAAACTGATAAGGT+TGG - chr7_4:42998427-42998446 Msa1155150:intron 30.0%
AGCAATATGGTGAAAGAAAA+TGG - chr7_4:42998453-42998472 Msa1155150:intron 30.0%
GCAATATGGTGAAAGAAAAT+GGG - chr7_4:42998454-42998473 Msa1155150:intron 30.0%
CTTTAACAAGATCATTCAAG+CGG - chr7_4:42998557-42998576 Msa1155150:intron 30.0%
!! AACAATCCTAGAAGTGTTTA+TGG - chr7_4:42998836-42998855 Msa1155150:intron 30.0%
TAATTAGACCATGTTTGGAT+TGG + chr7_4:42998883-42998902 None:intergenic 30.0%
ACAGATAATTAGACCATGTT+TGG + chr7_4:42998888-42998907 None:intergenic 30.0%
TATAGAATCGATCACTATCT+TGG - chr7_4:42998954-42998973 Msa1155150:intron 30.0%
! ATCTAATTTTTGACCCTTTG+TGG - chr7_4:42999018-42999037 Msa1155150:intron 30.0%
! TTGATATTCTCAGCAGATTT+TGG - chr7_4:42999068-42999087 Msa1155150:intron 30.0%
! AAAAAGTGTAAATGCTGCAA+AGG + chr7_4:42999124-42999143 None:intergenic 30.0%
TGTAGGTACTTTGACAATTA+TGG - chr7_4:42999190-42999209 Msa1155150:five_prime_UTR 30.0%
AGAGGACATTAGAAATGAAA+AGG - chr7_4:42999294-42999313 Msa1155150:five_prime_UTR 30.0%
AGAAATGAAAAGGTCTCATA+TGG - chr7_4:42999304-42999323 Msa1155150:five_prime_UTR 30.0%
! TACTTATATTTAAGGTCGGA+GGG + chr7_4:42999376-42999395 None:intergenic 30.0%
!!! ACCTTTTTCGGTCAAATATA+AGG - chr7_4:42999428-42999447 Msa1155150:intron 30.0%
CATGACTTTCAATTGCTTAA+TGG - chr7_4:42999599-42999618 Msa1155150:intron 30.0%
!! TACAGTTTTGTCATCAATGT+AGG + chr7_4:42999726-42999745 None:intergenic 30.0%
TCTTGCATTATCTATGAAGT+GGG + chr7_4:42999786-42999805 None:intergenic 30.0%
ATCTTGCATTATCTATGAAG+TGG + chr7_4:42999787-42999806 None:intergenic 30.0%
ACTTCATAGATAATGCAAGA+TGG - chr7_4:42999786-42999805 Msa1155150:intron 30.0%
CTTCATAGATAATGCAAGAT+GGG - chr7_4:42999787-42999806 Msa1155150:intron 30.0%
TGTATTCTGTATTGTGACAT+TGG + chr7_4:43000058-43000077 None:intergenic 30.0%
TAACCAAGAAACACTTATTC+TGG + chr7_4:43000384-43000403 None:intergenic 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - chr7_4:43000528-43000547 Msa1155150:five_prime_UTR 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - chr7_4:43000535-43000554 Msa1155150:five_prime_UTR 30.0%
TAAACAAATTATGAGGCTTC+AGG - chr7_4:43000694-43000713 Msa1155150:intron 30.0%
! ATCTATTTATCAGAGTGTCA+TGG + chr7_4:43000832-43000851 None:intergenic 30.0%
ATGTACAACAAAACACTCAT+GGG + chr7_4:43000877-43000896 None:intergenic 30.0%
AGACAAGATGAAAAATGCAA+AGG + chr7_4:43001017-43001036 None:intergenic 30.0%
! TGAATCATGCCAACTTTTAA+GGG + chr7_4:43001067-43001086 None:intergenic 30.0%
! ATGAATCATGCCAACTTTTA+AGG + chr7_4:43001068-43001087 None:intergenic 30.0%
! AAAATGTGTTGCTATCATGA+AGG - chr7_4:43001105-43001124 Msa1155150:intron 30.0%
AACAATTGACAACAAATGCA+GGG + chr7_4:43001299-43001318 None:intergenic 30.0%
AAACAATTGACAACAAATGC+AGG + chr7_4:43001300-43001319 None:intergenic 30.0%
!! TTTTCAGGAAATATACAGTC+TGG - chr7_4:43001354-43001373 Msa1155150:intron 30.0%
ATCGAAAATTTAAACAGCGT+TGG - chr7_4:43001401-43001420 Msa1155150:intron 30.0%
GTTGGTTATCTACTCAAAAA+AGG - chr7_4:43001419-43001438 Msa1155150:intron 30.0%
AGAGTTGCACATTAATAAGA+TGG + chr7_4:43001511-43001530 None:intergenic 30.0%
TATTATCCTCTTTGTACTCA+CGG - chr7_4:43001643-43001662 Msa1155150:intron 30.0%
GTGTTTAAGAATCCGAAAAA+AGG - chr7_4:43001753-43001772 Msa1155150:intron 30.0%
! AGCACATTCTTAAAGTATTC+CGG + chr7_4:43001811-43001830 None:intergenic 30.0%
TCATCGAATATGCAATTTCA+AGG - chr7_4:43001848-43001867 Msa1155150:intron 30.0%
CATCGAATATGCAATTTCAA+GGG - chr7_4:43001849-43001868 Msa1155150:intron 30.0%
ATCGAATATGCAATTTCAAG+GGG - chr7_4:43001850-43001869 Msa1155150:intron 30.0%
AGCAAATAGATAAGTGGTTA+AGG + chr7_4:43001998-43002017 None:intergenic 30.0%
GTCATGATCTTAAGAAAAGA+AGG + chr7_4:43002292-43002311 None:intergenic 30.0%
!! CTAATCTGAGTCTTTGAAAT+TGG - chr7_4:43002431-43002450 Msa1155150:intron 30.0%
! CAATTTTTCTTAACTGGGTT+CGG + chr7_4:43002899-43002918 None:intergenic 30.0%
! GTGAGGATTGTAGAATTTTG+GGG + chr7_4:42996188-42996207 None:intergenic 35.0%
! GGTGAGGATTGTAGAATTTT+GGG + chr7_4:42996189-42996208 None:intergenic 35.0%
! TGATGATTTTCATGGGGTTT+GGG + chr7_4:42996210-42996229 None:intergenic 35.0%
! ATGATGATTTTCATGGGGTT+TGG + chr7_4:42996211-42996230 None:intergenic 35.0%
TGGGAAATCTCTATTCATGA+AGG - chr7_4:42996484-42996503 Msa1155150:intron 35.0%
AGAAAAAAAAGGGGAGAAAC+GGG - chr7_4:42996600-42996619 Msa1155150:intron 35.0%
ATGCATGCATGACTTTAGAT+TGG + chr7_4:42996723-42996742 None:intergenic 35.0%
GAATGTTAAGTTTGGGTAAG+AGG - chr7_4:42996825-42996844 Msa1155150:intron 35.0%
!! GGTTTTCAAGACTGAGTAAT+TGG - chr7_4:42996939-42996958 Msa1155150:intron 35.0%
!! AGGTTTATTGATTTAGCCAC+TGG - chr7_4:42997223-42997242 Msa1155150:five_prime_UTR 35.0%
ATAACTGCAACTTATGCAAC+TGG + chr7_4:42997406-42997425 None:intergenic 35.0%
CATAAGTTGCAGTTATAAGC+TGG - chr7_4:42997410-42997429 Msa1155150:intron 35.0%
ATAAAAGAAGCTTGCAGTTC+TGG + chr7_4:42997759-42997778 None:intergenic 35.0%
! TTGAGTTGTAAACTGTCAAC+GGG + chr7_4:42997989-42998008 None:intergenic 35.0%
! GTTGAGTTGTAAACTGTCAA+CGG + chr7_4:42997990-42998009 None:intergenic 35.0%
TTGACAGTTTACAACTCAAC+AGG - chr7_4:42997990-42998009 Msa1155150:intron 35.0%
TGACAGTTTACAACTCAACA+GGG - chr7_4:42997991-42998010 Msa1155150:intron 35.0%
!! ATTCTGAAGCGTGTAGAAAA+AGG - chr7_4:42998169-42998188 Msa1155150:intron 35.0%
ACTAAGGTAGCAGTTTATGT+TGG - chr7_4:42998248-42998267 Msa1155150:five_prime_UTR 35.0%
!! TAGCAGTTTATGTTGGTTTG+AGG - chr7_4:42998255-42998274 Msa1155150:five_prime_UTR 35.0%
TGAGGTTATGAGATGGTTAT+TGG - chr7_4:42998273-42998292 Msa1155150:five_prime_UTR 35.0%
!! ATAAGGTTGGTGAAGCAATA+TGG - chr7_4:42998440-42998459 Msa1155150:intron 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr7_4:42998479-42998498 Msa1155150:intron 35.0%
! TGACTGAGGATCAAATTTTC+AGG - chr7_4:42998584-42998603 Msa1155150:intron 35.0%
AACTACACTTTGACTGTGTT+TGG - chr7_4:42998613-42998632 Msa1155150:intron 35.0%
!! ACACTTCTAGGATTGTTTGA+AGG + chr7_4:42998833-42998852 None:intergenic 35.0%
CAAACAATCCAATCCAAACA+TGG - chr7_4:42998872-42998891 Msa1155150:intron 35.0%
TTCATATCTGTTCCATGTGT+AGG - chr7_4:42999173-42999192 Msa1155150:intron 35.0%
! ATTGTCAAAGTACCTACACA+TGG + chr7_4:42999188-42999207 None:intergenic 35.0%
AATACTAGTCCTCTTTGCAA+TGG - chr7_4:42999249-42999268 Msa1155150:five_prime_UTR 35.0%
AATGGAAACTCCTGTTAGTT+TGG - chr7_4:42999267-42999286 Msa1155150:five_prime_UTR 35.0%
! CTACTTATATTTAAGGTCGG+AGG + chr7_4:42999377-42999396 None:intergenic 35.0%
GCCTTATATTTGACCGAAAA+AGG + chr7_4:42999432-42999451 None:intergenic 35.0%
! TTTTCGGTCAAATATAAGGC+CGG - chr7_4:42999432-42999451 Msa1155150:intron 35.0%
!!! AAAGTCCAGGTTTTAAACTC+TGG + chr7_4:42999477-42999496 None:intergenic 35.0%
!! TGATTTTGAGAAGAAAGTCC+AGG + chr7_4:42999490-42999509 None:intergenic 35.0%
TCTTCTCAAAATCATTTGGG+TGG - chr7_4:42999496-42999515 Msa1155150:intron 35.0%
! TCAATTGCTTAATGGATGTC+AGG - chr7_4:42999607-42999626 Msa1155150:intron 35.0%
ACTACATCCTCGAGTTTAAT+CGG + chr7_4:42999656-42999675 None:intergenic 35.0%
! AAACTCGAGGATGTAGTTTT+AGG - chr7_4:42999659-42999678 Msa1155150:intron 35.0%
TGATGACAAAACTGTACCAA+AGG - chr7_4:42999730-42999749 Msa1155150:intron 35.0%
ATAGATAATGCAAGATGGGA+TGG - chr7_4:42999791-42999810 Msa1155150:intron 35.0%
TAGATAATGCAAGATGGGAT+GGG - chr7_4:42999792-42999811 Msa1155150:intron 35.0%
!!! TACCTTTTTTGATGAAGGCT+GGG - chr7_4:42999816-42999835 Msa1155150:intron 35.0%
TATTCCTTTCACTTACCTCT+TGG + chr7_4:42999855-42999874 None:intergenic 35.0%
TAGCAGATCGTGAAAATTTG+CGG - chr7_4:42999896-42999915 Msa1155150:intron 35.0%
!! TTGTGACATTGGTTTGATGT+TGG + chr7_4:43000047-43000066 None:intergenic 35.0%
GATCTCAGCTTAAAAGAGAT+GGG + chr7_4:43000334-43000353 None:intergenic 35.0%
TGATCTCAGCTTAAAAGAGA+TGG + chr7_4:43000335-43000354 None:intergenic 35.0%
! TCTCTTTTAAGCTGAGATCA+AGG - chr7_4:43000335-43000354 Msa1155150:intron 35.0%
! CTCTTTTAAGCTGAGATCAA+GGG - chr7_4:43000336-43000355 Msa1155150:intron 35.0%
ATGCCAGAATAAGTGTTTCT+TGG - chr7_4:43000378-43000397 Msa1155150:intron 35.0%
!! GTTTTGGTCATGTGACTATT+TGG - chr7_4:43000590-43000609 Msa1155150:five_prime_UTR 35.0%
!! TCATGTGACTATTTGGTGTA+AGG - chr7_4:43000597-43000616 Msa1155150:intron 35.0%
! TTGGTGTAAGGTTTTTCACT+TGG - chr7_4:43000609-43000628 Msa1155150:intron 35.0%
AATAGTAAGCTAACAGTGTG+AGG + chr7_4:43000752-43000771 None:intergenic 35.0%
CTTACTATTGCATGACAAAC+TGG - chr7_4:43000763-43000782 Msa1155150:intron 35.0%
GATGTACAACAAAACACTCA+TGG + chr7_4:43000878-43000897 None:intergenic 35.0%
!! TGAGTGTTTTGTTGTACATC+AGG - chr7_4:43000878-43000897 Msa1155150:five_prime_UTR 35.0%
!!! GACATTTGTTTTGTTCCGTT+TGG - chr7_4:43001041-43001060 Msa1155150:intron 35.0%
!!! TTGTTGATTTTGGTTGAAGC+AGG - chr7_4:43001164-43001183 Msa1155150:intron 35.0%
!!! TGTTGATTTTGGTTGAAGCA+GGG - chr7_4:43001165-43001184 Msa1155150:intron 35.0%
TCTTAATAAGCAATCAGAGC+TGG - chr7_4:43001228-43001247 Msa1155150:five_prime_UTR 35.0%
!! TCGATGAAAGTATCCATATC+AGG + chr7_4:43001386-43001405 None:intergenic 35.0%
AAAAGGACCAAAGACATATC+AGG - chr7_4:43001436-43001455 Msa1155150:intron 35.0%
TCAAACAAACCTCTATAGAG+TGG + chr7_4:43001482-43001501 None:intergenic 35.0%
! GGTAAGGCATTATAGATTCT+TGG + chr7_4:43001542-43001561 None:intergenic 35.0%
TAATACCTGCATGTGTCAAA+AGG + chr7_4:43001628-43001647 None:intergenic 35.0%
!!! GATAAGGTACACCCTTTTTT+CGG + chr7_4:43001768-43001787 None:intergenic 35.0%
GGGAACTTTGGTATAAGATA+AGG + chr7_4:43001784-43001803 None:intergenic 35.0%
! TCTTAAAGTATTCCGGGAAA+GGG + chr7_4:43001804-43001823 None:intergenic 35.0%
! TTCTTAAAGTATTCCGGGAA+AGG + chr7_4:43001805-43001824 None:intergenic 35.0%
! GCACATTCTTAAAGTATTCC+GGG + chr7_4:43001810-43001829 None:intergenic 35.0%
AAATTAATGTTGTGCCTGTC+AGG - chr7_4:43002594-43002613 Msa1155150:intron 35.0%
AATTAATGTTGTGCCTGTCA+GGG - chr7_4:43002595-43002614 Msa1155150:intron 35.0%
TTGAAGATCAATGCACTTGA+AGG - chr7_4:43002681-43002700 Msa1155150:intron 35.0%
TCTATAGCTGCAAATTGAAG+TGG + chr7_4:43002774-43002793 None:intergenic 35.0%
AGGCAACTTATAATTGCCTA+AGG + chr7_4:43002823-43002842 None:intergenic 35.0%
!!! TTTTGGGGTTGAGAATGAGA+GGG + chr7_4:42996173-42996192 None:intergenic 40.0%
!!! ATTTTGGGGTTGAGAATGAG+AGG + chr7_4:42996174-42996193 None:intergenic 40.0%
! GGGTGAGGATTGTAGAATTT+TGG + chr7_4:42996190-42996209 None:intergenic 40.0%
AAGATTGAAGGATGGGGTTA+GGG + chr7_4:42996322-42996341 None:intergenic 40.0%
AAAGATTGAAGGATGGGGTT+AGG + chr7_4:42996323-42996342 None:intergenic 40.0%
AAAGTGATAGGAGAAGTTGC+TGG - chr7_4:42996461-42996480 Msa1155150:intron 40.0%
CATGCATGCATAATTCTCTC+TGG - chr7_4:42996732-42996751 Msa1155150:CDS 40.0%
AGGGAGAAGAGTAGAAGAAA+TGG - chr7_4:42996872-42996891 Msa1155150:intron 40.0%
CAAGACTGAGTAATTGGAGA+TGG - chr7_4:42996945-42996964 Msa1155150:CDS 40.0%
AGTAATTGGAGATGGAAGCT+AGG - chr7_4:42996953-42996972 Msa1155150:CDS 40.0%
AGATGGAAGCTAGGAACTTA+AGG - chr7_4:42996962-42996981 Msa1155150:CDS 40.0%
AGATTATGCATGAGGGATGA+GGG + chr7_4:42997048-42997067 None:intergenic 40.0%
TAGATTATGCATGAGGGATG+AGG + chr7_4:42997049-42997068 None:intergenic 40.0%
TCACACGAAGACAATGCATT+TGG + chr7_4:42997586-42997605 None:intergenic 40.0%
CATTGTCTTCGTGTGAGTAT+TGG - chr7_4:42997590-42997609 Msa1155150:five_prime_UTR 40.0%
TGAGTTGTAAACTGTCAACG+GGG + chr7_4:42997988-42998007 None:intergenic 40.0%
TTGAAGAATGAGCAGCATGA+AGG + chr7_4:42998053-42998072 None:intergenic 40.0%
GTGACAGGGAACATATCATT+AGG + chr7_4:42998081-42998100 None:intergenic 40.0%
TGAAGCGTGTAGAAAAAGGT+TGG - chr7_4:42998173-42998192 Msa1155150:intron 40.0%
GAAGCGTGTAGAAAAAGGTT+GGG - chr7_4:42998174-42998193 Msa1155150:intron 40.0%
AAGCGTGTAGAAAAAGGTTG+GGG - chr7_4:42998175-42998194 Msa1155150:intron 40.0%
!! GTTGGTTTGAGGTTATGAGA+TGG - chr7_4:42998266-42998285 Msa1155150:five_prime_UTR 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr7_4:42998483-42998502 Msa1155150:intron 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr7_4:42998484-42998503 Msa1155150:intron 40.0%
TGATCTTGTTAAAGCAGCTG+AGG + chr7_4:42998551-42998570 None:intergenic 40.0%
CTATCTTGGAAAAGAGCTTG+TGG - chr7_4:42998968-42998987 Msa1155150:intron 40.0%
!! TCAGCAGATTTTGGTACTGA+AGG - chr7_4:42999077-42999096 Msa1155150:intron 40.0%
! TCCTGTTAGTTTGGATGTAG+AGG - chr7_4:42999276-42999295 Msa1155150:five_prime_UTR 40.0%
TCCTCTACATCCAAACTAAC+AGG + chr7_4:42999280-42999299 None:intergenic 40.0%
CTTCTAGCATATACATCCTC+CGG + chr7_4:42999454-42999473 None:intergenic 40.0%
! AGAAGCCAGAGTTTAAAACC+TGG - chr7_4:42999469-42999488 Msa1155150:intron 40.0%
TATGAGACCGATTAAACTCG+AGG - chr7_4:42999646-42999665 Msa1155150:intron 40.0%
CTCTGGTGTGGTTCTTATAT+TGG + chr7_4:42999685-42999704 None:intergenic 40.0%
CAATATAAGAACCACACCAG+AGG - chr7_4:42999683-42999702 Msa1155150:intron 40.0%
! GTTTTGTCATCAATGTAGGC+TGG + chr7_4:42999722-42999741 None:intergenic 40.0%
AGATAATGCAAGATGGGATG+GGG - chr7_4:42999793-42999812 Msa1155150:intron 40.0%
!!! TGGGGTACCTTTTTTGATGA+AGG - chr7_4:42999811-42999830 Msa1155150:intron 40.0%
!!! GTACCTTTTTTGATGAAGGC+TGG - chr7_4:42999815-42999834 Msa1155150:intron 40.0%
TTCCCAGCCTTCATCAAAAA+AGG + chr7_4:42999821-42999840 None:intergenic 40.0%
AAAATAGGGGCTAATGACCA+TGG + chr7_4:43000561-43000580 None:intergenic 40.0%
ACTATTGCATGACAAACTGG+TGG - chr7_4:43000766-43000785 Msa1155150:intron 40.0%
! TTTGTTGTACATCAGGTGAC+TGG - chr7_4:43000885-43000904 Msa1155150:intron 40.0%
ATCAGGTGACTGGTATATAC+AGG - chr7_4:43000895-43000914 Msa1155150:intron 40.0%
TCAGGTGACTGGTATATACA+GGG - chr7_4:43000896-43000915 Msa1155150:intron 40.0%
ATACAGGGCTATGAATGTCA+AGG - chr7_4:43000911-43000930 Msa1155150:intron 40.0%
GACTTAACAGTTCTCTGAGT+TGG + chr7_4:43000942-43000961 None:intergenic 40.0%
!!! GTTGATTTTGGTTGAAGCAG+GGG - chr7_4:43001166-43001185 Msa1155150:intron 40.0%
!!! TTGATTTTGGTTGAAGCAGG+GGG - chr7_4:43001167-43001186 Msa1155150:intron 40.0%
! TTTTACGCTCCACTCTATAG+AGG - chr7_4:43001470-43001489 Msa1155150:intron 40.0%
AACCTTTCTTCCCCTTATAG+AGG + chr7_4:43001581-43001600 None:intergenic 40.0%
! ACAATCCTTTTGACACATGC+AGG - chr7_4:43001620-43001639 Msa1155150:intron 40.0%
TATACCAAAGTTCCCTTTCC+CGG - chr7_4:43001789-43001808 Msa1155150:intron 40.0%
ATTGGTTGAGATCTGACAGA+AGG - chr7_4:43002040-43002059 Msa1155150:five_prime_UTR 40.0%
TTGGTTGAGATCTGACAGAA+GGG - chr7_4:43002041-43002060 Msa1155150:five_prime_UTR 40.0%
! AGCATTATGCAGGTTGACTT+TGG - chr7_4:43002090-43002109 Msa1155150:five_prime_UTR 40.0%
TTGCAGAAATATGCAGCACA+GGG - chr7_4:43002214-43002233 Msa1155150:five_prime_UTR 40.0%
! GACTCTGCCATATCTAAAGT+AGG - chr7_4:43002309-43002328 Msa1155150:five_prime_UTR 40.0%
TCAAAGTTCTCAAGTGGCAA+CGG - chr7_4:43002477-43002496 Msa1155150:intron 40.0%
TCGGTGTGCAAAACAAAGTT+GGG + chr7_4:43002638-43002657 None:intergenic 40.0%
TTGTTGCTAATCTTCCACCT+CGG + chr7_4:43002657-43002676 None:intergenic 40.0%
! ATTTTCATGGGGTTTGGGTG+AGG + chr7_4:42996205-42996224 None:intergenic 45.0%
CAGAACTGGAAGAGGAGAAA+AGG + chr7_4:42996288-42996307 None:intergenic 45.0%
AGTTTGGACAGAACTGGAAG+AGG + chr7_4:42996296-42996315 None:intergenic 45.0%
TGATAGGAGAAGTTGCTGGT+GGG - chr7_4:42996465-42996484 Msa1155150:intron 45.0%
AAAAAGGGGAGAAACGGGAA+CGG - chr7_4:42996605-42996624 Msa1155150:intron 45.0%
TCTCTCTTACTCTTCCTCAC+CGG + chr7_4:42996689-42996708 None:intergenic 45.0%
GAGGAAGAGTAAGAGAGAGA+CGG - chr7_4:42996691-42996710 Msa1155150:intron 45.0%
GCAGAAAATAGCTTCAGTGC+AGG - chr7_4:42997341-42997360 Msa1155150:five_prime_UTR 45.0%
! AAAGAAGCTTGCAGTTCTGG+AGG + chr7_4:42997756-42997775 None:intergenic 45.0%
!!! CGGGGTGGATTGCTTTTTTT+CGG + chr7_4:42997970-42997989 None:intergenic 45.0%
GAATGAGCAGCATGAAGGAA+TGG + chr7_4:42998048-42998067 None:intergenic 45.0%
! CTGTTACTTGACAGGGATGT+TGG - chr7_4:42998127-42998146 Msa1155150:intron 45.0%
GTAGAAAAAGGTTGGGGTCA+AGG - chr7_4:42998181-42998200 Msa1155150:intron 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr7_4:42998488-42998507 Msa1155150:intron 45.0%
ATTCAAGCGGTATCTGACTG+AGG - chr7_4:42998570-42998589 Msa1155150:intron 45.0%
GGATTGTTTGAAGGAGCTCA+AGG + chr7_4:42998824-42998843 None:intergenic 45.0%
CCACTGCCATAAACACTTCT+AGG + chr7_4:42998845-42998864 None:intergenic 45.0%
!! CCTAGAAGTGTTTATGGCAG+TGG - chr7_4:42998842-42998861 Msa1155150:intron 45.0%
! TTTTTGACCCTTTGTGGTCG+AGG - chr7_4:42999024-42999043 Msa1155150:intron 45.0%
TGTATTGCCTCGACCACAAA+GGG + chr7_4:42999034-42999053 None:intergenic 45.0%
ATGTATTGCCTCGACCACAA+AGG + chr7_4:42999035-42999054 None:intergenic 45.0%
!! GATTTTGGTACTGAAGGACG+TGG - chr7_4:42999083-42999102 Msa1155150:intron 45.0%
CAGGAGTTTCCATTGCAAAG+AGG + chr7_4:42999261-42999280 None:intergenic 45.0%
! GCTTAATGGATGTCAGGTCA+AGG - chr7_4:42999613-42999632 Msa1155150:intron 45.0%
TATAAGAACCACACCAGAGG+AGG - chr7_4:42999686-42999705 Msa1155150:intron 45.0%
!! GGAAAGCATTACACACCAAG+AGG - chr7_4:42999837-42999856 Msa1155150:intron 45.0%
CACACCAAGAGGTAAGTGAA+AGG - chr7_4:42999848-42999867 Msa1155150:intron 45.0%
! GATAAGTTGGATGATGGCCA+TGG - chr7_4:43000541-43000560 Msa1155150:five_prime_UTR 45.0%
! CATGACAAACTGGTGGATAC+TGG - chr7_4:43000773-43000792 Msa1155150:intron 45.0%
AGGGCTATGAATGTCAAGGT+GGG - chr7_4:43000915-43000934 Msa1155150:intron 45.0%
TCCGTTTGGCCCTTAAAAGT+TGG - chr7_4:43001055-43001074 Msa1155150:intron 45.0%
!! GCCAACTTTTAAGGGCCAAA+CGG + chr7_4:43001059-43001078 None:intergenic 45.0%
!!! GAGCATGGGGTTGTTGATTT+TGG - chr7_4:43001154-43001173 Msa1155150:intron 45.0%
AGTCTGGCTGATACCTGATA+TGG - chr7_4:43001370-43001389 Msa1155150:intron 45.0%
CATCGCACCTGATATGTCTT+TGG + chr7_4:43001446-43001465 None:intergenic 45.0%
CTTATAGAGGTGGCTAGGAA+GGG + chr7_4:43001568-43001587 None:intergenic 45.0%
CTTCCTAGCCACCTCTATAA+GGG - chr7_4:43001567-43001586 Msa1155150:intron 45.0%
TTCCTAGCCACCTCTATAAG+GGG - chr7_4:43001568-43001587 Msa1155150:intron 45.0%
CTTTCTTCCCCTTATAGAGG+TGG + chr7_4:43001578-43001597 None:intergenic 45.0%
CACCTCTATAAGGGGAAGAA+AGG - chr7_4:43001576-43001595 Msa1155150:intron 45.0%
TATTCCGGGAAAGGGAACTT+TGG + chr7_4:43001796-43001815 None:intergenic 45.0%
TGCAAATGGTTGCTGCAGAT+TGG - chr7_4:43002022-43002041 Msa1155150:five_prime_UTR 45.0%
GACAGAAGGGAAGATGATCT+TGG - chr7_4:43002054-43002073 Msa1155150:five_prime_UTR 45.0%
AGAAGGGAAGATGATCTTGG+TGG - chr7_4:43002057-43002076 Msa1155150:five_prime_UTR 45.0%
!!! GCAGGTTGACTTTGGTGTTT+TGG - chr7_4:43002098-43002117 Msa1155150:five_prime_UTR 45.0%
CTTGCAGAAATATGCAGCAC+AGG - chr7_4:43002213-43002232 Msa1155150:five_prime_UTR 45.0%
AGAAATATGCAGCACAGGGT+GGG - chr7_4:43002218-43002237 Msa1155150:five_prime_UTR 45.0%
GCCTGTCAGGGATATAACTA+TGG - chr7_4:43002607-43002626 Msa1155150:intron 45.0%
GCCATAGTTATATCCCTGAC+AGG + chr7_4:43002611-43002630 None:intergenic 45.0%
! CTCGGTGTGCAAAACAAAGT+TGG + chr7_4:43002639-43002658 None:intergenic 45.0%
!!! CAACTTTGTTTTGCACACCG+AGG - chr7_4:43002637-43002656 Msa1155150:intron 45.0%
!!! TTTTATTAATATGTTTTATT+TGG - chr7_4:42998396-42998415 Msa1155150:intron 5.0%
TTCCTCCCTCTCTTCTCTCA+CGG - chr7_4:42996115-42996134 Msa1155150:three_prime_UTR 50.0%
GGAAACCGTGAGAGAAGAGA+GGG + chr7_4:42996123-42996142 None:intergenic 50.0%
TGGAAACCGTGAGAGAAGAG+AGG + chr7_4:42996124-42996143 None:intergenic 50.0%
GAGAGATGGGAGGAAGAAAG+TGG + chr7_4:42996144-42996163 None:intergenic 50.0%
TCTTCCTCCCATCTCTCTCT+CGG - chr7_4:42996147-42996166 Msa1155150:three_prime_UTR 50.0%
GGGTTCAGTTTGGACAGAAC+TGG + chr7_4:42996302-42996321 None:intergenic 50.0%
GATGGGGTTAGGGTTCAGTT+TGG + chr7_4:42996312-42996331 None:intergenic 50.0%
GTGATAGGAGAAGTTGCTGG+TGG - chr7_4:42996464-42996483 Msa1155150:intron 50.0%
AAAAGGGGAGAAACGGGAAC+GGG - chr7_4:42996606-42996625 Msa1155150:intron 50.0%
AAGAAGAACGGGAACGGGAA+AGG - chr7_4:42996632-42996651 Msa1155150:intron 50.0%
AGAAGAACGGGAACGGGAAA+GGG - chr7_4:42996633-42996652 Msa1155150:intron 50.0%
! GTTTTTCGCCGCAGTTGTGA+CGG + chr7_4:42996659-42996678 None:intergenic 50.0%
ACAACTGCGGCGAAAAACAG+CGG - chr7_4:42996661-42996680 Msa1155150:intron 50.0%
GTTTGGGTAAGAGGGATCTG+AGG - chr7_4:42996834-42996853 Msa1155150:intron 50.0%
TGCATGAGGGATGAGGGAAA+GGG + chr7_4:42997042-42997061 None:intergenic 50.0%
ATGCATGAGGGATGAGGGAA+AGG + chr7_4:42997043-42997062 None:intergenic 50.0%
!! GGTTTTATGGACTGCTGTGC+TGG - chr7_4:42997489-42997508 Msa1155150:intron 50.0%
! ATGGACTGCTGTGCTGGAAT+TGG - chr7_4:42997495-42997514 Msa1155150:intron 50.0%
GTTGTAAACTGTCAACGGGG+TGG + chr7_4:42997985-42998004 None:intergenic 50.0%
TCGGTCAAATATAAGGCCGG+AGG - chr7_4:42999435-42999454 Msa1155150:intron 50.0%
TACGCCTCAGCTCATGGTTA+TGG - chr7_4:42999539-42999558 Msa1155150:intron 50.0%
AGGTCCATAACCATGAGCTG+AGG + chr7_4:42999546-42999565 None:intergenic 50.0%
TGGATATGCAACACCTCCTC+TGG + chr7_4:42999702-42999721 None:intergenic 50.0%
GTCTGGGTTAAGCTGTCCTT+TGG + chr7_4:42999749-42999768 None:intergenic 50.0%
CTTAACCCAGACATTTGCCG+CGG - chr7_4:42999757-42999776 Msa1155150:intron 50.0%
ACACCTGACGAGATACCTGA+GGG - chr7_4:43000719-43000738 Msa1155150:intron 50.0%
AAAGCCAGGTGACAGAGTTG+AGG - chr7_4:43000796-43000815 Msa1155150:five_prime_UTR 50.0%
CAGGGCTATGAATGTCAAGG+TGG - chr7_4:43000914-43000933 Msa1155150:intron 50.0%
GGGGATCAGTCAACAGAAAG+AGG - chr7_4:43001186-43001205 Msa1155150:intron 50.0%
TGGCTAGGAAGGGATAGGTA+AGG + chr7_4:43001558-43001577 None:intergenic 50.0%
CCTTATAGAGGTGGCTAGGA+AGG + chr7_4:43001569-43001588 None:intergenic 50.0%
CCTTCCTAGCCACCTCTATA+AGG - chr7_4:43001566-43001585 Msa1155150:intron 50.0%
TTCCCCTTATAGAGGTGGCT+AGG + chr7_4:43001573-43001592 None:intergenic 50.0%
TCAACCTGCATAATGCTCCC+AGG + chr7_4:43002087-43002106 None:intergenic 50.0%
CAGAAATATGCAGCACAGGG+TGG - chr7_4:43002217-43002236 Msa1155150:five_prime_UTR 50.0%
!!! CTTTGTTTTGCACACCGAGG+TGG - chr7_4:43002640-43002659 Msa1155150:intron 50.0%
AACCGTGAGAGAAGAGAGGG+AGG + chr7_4:42996120-42996139 None:intergenic 55.0%
GGGAACGGGAGGAAGAAGAA+CGG - chr7_4:42996620-42996639 Msa1155150:intron 55.0%
GGAACGGGAGGAAGAAGAAC+GGG - chr7_4:42996621-42996640 Msa1155150:intron 55.0%
GGGAGGAAGAAGAACGGGAA+CGG - chr7_4:42996626-42996645 Msa1155150:intron 55.0%
GGAGGAAGAAGAACGGGAAC+GGG - chr7_4:42996627-42996646 Msa1155150:intron 55.0%
!! ATGGTGATGGCAGCAAGCTC+TGG + chr7_4:42996999-42997018 None:intergenic 55.0%
GCAAGCAGTGTAGAGAGCGA+TGG - chr7_4:42998510-42998529 Msa1155150:intron 55.0%
! TTGGTACTGAAGGACGTGGC+AGG - chr7_4:42999087-42999106 Msa1155150:intron 55.0%
TTGAGCTACGCCTCAGCTCA+TGG - chr7_4:42999533-42999552 Msa1155150:intron 55.0%
ATGCAACACCTCCTCTGGTG+TGG + chr7_4:42999697-42999716 None:intergenic 55.0%
ATCTATGAAGTGGGCAGCCG+CGG + chr7_4:42999777-42999796 None:intergenic 55.0%
GACACCTGACGAGATACCTG+AGG - chr7_4:43000718-43000737 Msa1155150:intron 55.0%
! CTGGTGGATACTGGAAAGCC+AGG - chr7_4:43000782-43000801 Msa1155150:intron 55.0%
CTCACCTCAACTCTGTCACC+TGG + chr7_4:43000803-43000822 None:intergenic 55.0%
AGAGGTGGCTAGGAAGGGAT+AGG + chr7_4:43001563-43001582 None:intergenic 55.0%
CTGGCTCCGTGAGTACAAAG+AGG + chr7_4:43001652-43001671 None:intergenic 55.0%
GAGCCAGTCGTCTAGGTCAA+GGG - chr7_4:43001665-43001684 Msa1155150:intron 55.0%
AGCCAGTCGTCTAGGTCAAG+GGG - chr7_4:43001666-43001685 Msa1155150:intron 55.0%
! ATGATCTTGGTGGCCGTCCT+GGG - chr7_4:43002067-43002086 Msa1155150:five_prime_UTR 55.0%
CCTGCATAATGCTCCCAGGA+CGG + chr7_4:43002083-43002102 None:intergenic 55.0%
GAGAGGGCCGAGAGAGAGAT+GGG + chr7_4:42996157-42996176 None:intergenic 60.0%
TGAGAGGGCCGAGAGAGAGA+TGG + chr7_4:42996158-42996177 None:intergenic 60.0%
GGAAAGGGCCGTCACAACTG+CGG - chr7_4:42996648-42996667 Msa1155150:intron 60.0%
! GGGATCTGAGGTCGAGAGTG+AGG - chr7_4:42996846-42996865 Msa1155150:intron 60.0%
TGAGGTCGAGAGTGAGGCAG+AGG - chr7_4:42996852-42996871 Msa1155150:intron 60.0%
GAGGTCGAGAGTGAGGCAGA+GGG - chr7_4:42996853-42996872 Msa1155150:intron 60.0%
GAGCTGAGGCGTAGCTCAAG+TGG + chr7_4:42999532-42999551 None:intergenic 60.0%
CCTCCCTCAGGTATCTCGTC+AGG + chr7_4:43000725-43000744 None:intergenic 60.0%
CCTGACGAGATACCTGAGGG+AGG - chr7_4:43000722-43000741 Msa1155150:intron 60.0%
ACTCACGGAGCCAGTCGTCT+AGG - chr7_4:43001658-43001677 Msa1155150:intron 60.0%
GGAGCCAGTCGTCTAGGTCA+AGG - chr7_4:43001664-43001683 Msa1155150:intron 60.0%
AGCCCCTTGACCTAGACGAC+TGG + chr7_4:43001671-43001690 None:intergenic 60.0%
! GATGATCTTGGTGGCCGTCC+TGG - chr7_4:43002066-43002085 Msa1155150:five_prime_UTR 60.0%
!! CCGTCCTGGGAGCATTATGC+AGG - chr7_4:43002080-43002099 Msa1155150:five_prime_UTR 60.0%
AGGGCCGAGAGAGAGATGGG+AGG + chr7_4:42996154-42996173 None:intergenic 65.0%
AGGGGAGAAACGGGAACGGG+AGG - chr7_4:42996609-42996628 Msa1155150:intron 65.0%
!! GAAAAACAGCGGCGCCGGTG+AGG - chr7_4:42996672-42996691 Msa1155150:intron 65.0%
GGCAGCCGCGGCAAATGTCT+GGG + chr7_4:42999765-42999784 None:intergenic 65.0%
! GTGTGAGGCGTTCCTCCCTC+AGG + chr7_4:43000737-43000756 None:intergenic 65.0%
GCGGCGAAAAACAGCGGCGC+CGG - chr7_4:42996667-42996686 Msa1155150:intron 70.0%
GGGCAGCCGCGGCAAATGTC+TGG + chr7_4:42999766-42999785 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42996107 43002937 42996107 ID=Msa1155150;Name=Msa1155150
chr7_4 mRNA 42996107 43002937 42996107 ID=Msa1155150-mRNA-1;Parent=Msa1155150;Name=Msa1155150-mRNA-1;_AED=0.14;_eAED=0.14;_QI=2169|1|1|1|0.38|0.35|14|267|80
chr7_4 exon 42996107 42996428 42996107 ID=Msa1155150-mRNA-1:exon:10759;Parent=Msa1155150-mRNA-1
chr7_4 exon 42996718 42996824 42996718 ID=Msa1155150-mRNA-1:exon:10758;Parent=Msa1155150-mRNA-1
chr7_4 exon 42996943 42997402 42996943 ID=Msa1155150-mRNA-1:exon:10757;Parent=Msa1155150-mRNA-1
chr7_4 exon 42997553 42997683 42997553 ID=Msa1155150-mRNA-1:exon:10756;Parent=Msa1155150-mRNA-1
chr7_4 exon 42997768 42997858 42997768 ID=Msa1155150-mRNA-1:exon:10755;Parent=Msa1155150-mRNA-1
chr7_4 exon 42998073 42998144 42998073 ID=Msa1155150-mRNA-1:exon:10754;Parent=Msa1155150-mRNA-1
chr7_4 exon 42998227 42998359 42998227 ID=Msa1155150-mRNA-1:exon:10753;Parent=Msa1155150-mRNA-1
chr7_4 exon 42999186 42999415 42999186 ID=Msa1155150-mRNA-1:exon:10752;Parent=Msa1155150-mRNA-1
chr7_4 exon 43000439 43000611 43000439 ID=Msa1155150-mRNA-1:exon:10751;Parent=Msa1155150-mRNA-1
chr7_4 exon 43000791 43000903 43000791 ID=Msa1155150-mRNA-1:exon:10750;Parent=Msa1155150-mRNA-1
chr7_4 exon 43001212 43001294 43001212 ID=Msa1155150-mRNA-1:exon:10749;Parent=Msa1155150-mRNA-1
chr7_4 exon 43002014 43002446 43002014 ID=Msa1155150-mRNA-1:exon:10748;Parent=Msa1155150-mRNA-1
chr7_4 exon 43002510 43002587 43002510 ID=Msa1155150-mRNA-1:exon:10747;Parent=Msa1155150-mRNA-1
chr7_4 exon 43002685 43002937 43002685 ID=Msa1155150-mRNA-1:exon:10746;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43002685 43002937 43002685 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43002510 43002587 43002510 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43002014 43002446 43002014 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43001212 43001294 43001212 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43000791 43000903 43000791 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 43000439 43000611 43000439 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42999186 42999415 42999186 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42998227 42998359 42998227 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42998073 42998144 42998073 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42997768 42997858 42997768 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42997553 42997683 42997553 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 five_prime_UTR 42997024 42997402 42997024 ID=Msa1155150-mRNA-1:five_prime_utr;Parent=Msa1155150-mRNA-1
chr7_4 CDS 42996943 42997023 42996943 ID=Msa1155150-mRNA-1:cds;Parent=Msa1155150-mRNA-1
chr7_4 CDS 42996718 42996824 42996718 ID=Msa1155150-mRNA-1:cds;Parent=Msa1155150-mRNA-1
chr7_4 CDS 42996374 42996428 42996374 ID=Msa1155150-mRNA-1:cds;Parent=Msa1155150-mRNA-1
chr7_4 three_prime_UTR 42996107 42996373 42996107 ID=Msa1155150-mRNA-1:three_prime_utr;Parent=Msa1155150-mRNA-1
Gene Sequence

>Msa1155150

ATGCAAATGGTTGCTGCAGATTGGTTGAGATCTGACAGAAGGGAAGATGATCTTGGTGGCCGTCCTGGGAGCATTATGCAGAAATATGCAGCACAGGGTGGGCCTGAGTTTTTCATTGTAAACATCTGTGGTGTTGTTCTCCCTTTGAATCCTTCTTTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCCAACTTTGTTTTGCACACCGAGGTGGAAGATTAG

Protein sequence

>Msa1155150

MQMVAADWLRSDRREDDLGGRPGSIMQKYAAQGGPEFFIVNICGVVLPLNPSFLKIMTLPYLKDITMAFPNFVLHTEVED*