AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096620 MtrunA17_Chr7g0222441 67.083 240 66 3 28 265 204 432 2.33e-97 305
Msa1096620 MtrunA17_Chr8g0341321 54.795 292 102 7 11 297 173 439 5.29e-87 278
Msa1096620 MtrunA17_Chr8g0358431 84.000 150 24 0 112 261 56 205 5.16e-85 260
Msa1096620 MtrunA17_Chr7g0228611 51.485 202 79 2 67 268 173 355 3.12e-54 190
Msa1096620 MtrunA17_Chr6g0458971 51.232 203 80 2 66 268 175 358 1.03e-53 188
Msa1096620 MtrunA17_Chr8g0356771 85.106 94 14 0 114 207 72 165 7.27e-50 168
Msa1096620 MtrunA17_Chr7g0271531 46.606 221 90 6 45 265 250 442 9.68e-50 179
Msa1096620 MtrunA17_Chr8g0356701 80.435 92 18 0 174 265 1 92 2.87e-46 157
Msa1096620 MtrunA17_Chr4g0035581 75.000 88 22 0 288 375 307 394 1.00e-35 141
Msa1096620 MtrunA17_Chr8g0356781 77.193 57 13 0 209 265 1 57 1.35e-22 96.3
Msa1096620 MtrunA17_Chr2g0326781 91.111 45 3 1 410 453 538 582 5.48e-18 87.0
Msa1096620 MtrunA17_Chr1g0199661 46.914 81 38 3 410 490 510 585 2.17e-12 69.7
Msa1096620 MtrunA17_Chr8g0388331 93.548 31 2 0 461 491 180 210 3.25e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096620 AT5G13110.1 63.821 246 71 5 26 265 200 433 2.65e-92 293
Msa1096620 AT1G24280.1 65.106 235 68 4 33 265 214 436 1.68e-90 288
Msa1096620 AT5G35790.1 59.109 247 83 5 25 265 180 414 3.72e-84 271
Msa1096620 AT3G27300.1 52.475 202 77 2 67 268 174 356 7.84e-56 194
Msa1096620 AT3G27300.3 52.475 202 77 2 67 268 174 356 7.84e-56 194
Msa1096620 AT3G27300.2 52.475 202 77 2 67 268 174 356 7.84e-56 194
Msa1096620 AT3G27300.4 57.714 175 56 2 102 268 263 427 3.03e-55 194
Msa1096620 AT3G27300.5 52.475 202 77 2 67 268 228 410 3.23e-55 194
Msa1096620 AT5G40760.2 51.485 202 79 2 67 268 173 355 1.76e-54 191
Msa1096620 AT5G40760.1 51.485 202 79 2 67 268 173 355 1.76e-54 191
Msa1096620 AT1G09420.1 53.988 163 62 3 104 265 316 466 7.91e-46 169
Msa1096620 AT1G09420.2 50.289 173 63 4 104 265 316 476 2.81e-42 159
Msa1096620 AT2G16440.1 84.286 70 11 0 288 357 314 383 1.11e-32 132
Msa1096620 AT2G28320.1 77.778 45 9 1 410 453 548 592 1.14e-14 77.4
Msa1096620 AT3G54800.2 66.667 45 14 1 410 453 545 589 1.26e-11 67.8
Msa1096620 AT3G54800.1 66.667 45 14 1 410 453 545 589 1.26e-11 67.8

Find 114 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGATTACTTTGAATT+TGG 0.131166 7_3:-21263637 Msa1096620:CDS
CTTTGGTGTGGTTCTTATAT+TGG 0.194005 7_3:+21261290 None:intergenic
GATTACTTTGAATTTGGATA+TGG 0.198668 7_3:-21263631 Msa1096620:CDS
TTGATATTCTCAGAAGATTT+TGG 0.217136 7_3:-21261904 Msa1096620:CDS
CAAAACACATTGTTCAAAAT+AGG 0.218645 7_3:+21260395 None:intergenic
TGTAGGTACTTTGACAATTA+TGG 0.237604 7_3:-21261782 Msa1096620:intron
AGCAATATGGTGAAAGAAAA+TGG 0.245087 7_3:-21262517 Msa1096620:CDS
TTGTTGTTTGATTGTGGTTT+TGG 0.275624 7_3:-21262668 Msa1096620:CDS
CATATGAATGATTCAATCAT+AGG 0.285850 7_3:-21263721 Msa1096620:CDS
GGGCAGCCGCGGCAAATGTC+TGG 0.287615 7_3:+21261209 None:intergenic
TGAGGTTATGAGATGGTTAT+TGG 0.298650 7_3:-21262697 Msa1096620:intron
AAAACACATTGTTCAAAATA+GGG 0.343951 7_3:+21260396 None:intergenic
TAAACAAATTATGAGGCTTC+AGG 0.348456 7_3:-21260274 Msa1096620:CDS
ATGGACTGCTGTGCTGGAAT+TGG 0.352828 7_3:-21263694 Msa1096620:CDS
CTTACTATTGCATGACAAAC+TGG 0.357680 7_3:-21260205 Msa1096620:CDS
GATGATCTTGGTGGCCGTCC+TGG 0.359921 7_3:-21258897 Msa1096620:CDS
AGCAAATAGATAAGTGGTTA+AGG 0.372183 7_3:+21258968 None:intergenic
ATTCTGAAGCGTGTAGAAAA+AGG 0.373678 7_3:-21262801 Msa1096620:CDS
TCGATGAAAGTATCCATATC+AGG 0.376038 7_3:+21259585 None:intergenic
TATAGAATCGATCACTATCT+TGG 0.382137 7_3:-21262018 Msa1096620:intron
TCCTCTACATCCAAACTAAC+AGG 0.382610 7_3:+21261695 None:intergenic
AGTCTGGCTGATACCTGATA+TGG 0.388600 7_3:-21259598 Msa1096620:CDS
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 7_3:-21262491 Msa1096620:CDS
AATGGAAACTCCTGTTAGTT+TGG 0.394148 7_3:-21261705 Msa1096620:CDS
CATCGCACCTGATATGTCTT+TGG 0.395784 7_3:+21259525 None:intergenic
CATGACAAACTGGTGGATAC+TGG 0.399287 7_3:-21260195 Msa1096620:CDS
ACTACATCCTCGAGTTTAAT+CGG 0.412521 7_3:+21261319 None:intergenic
AAAGAAACCTACTTTAGATA+TGG 0.414269 7_3:+21258645 None:intergenic
CTTTGCCTAATTAAAATCAA+TGG 0.418036 7_3:-21258120 Msa1096620:three_prime_UTR
ATTACTTTGAATTTGGATAT+GGG 0.418300 7_3:-21263630 Msa1096620:CDS
TGGATATGCAACACCTCCTT+TGG 0.419591 7_3:+21261273 None:intergenic
TTGAAGATCAATGCACTTGA+AGG 0.424310 7_3:-21258280 Msa1096620:three_prime_UTR
GCCTGTCAGGGATATAACTA+TGG 0.426019 7_3:-21258354 Msa1096620:intron
AAAAGGACCAAAGACATATC+AGG 0.426577 7_3:-21259532 Msa1096620:intron
TAGTTTCTTTGATCATTCAT+TGG 0.431004 7_3:+21258037 None:intergenic
CTGTTACTTGACAGGGATGT+TGG 0.431891 7_3:-21262843 Msa1096620:intron
ATCAGGTGACTGGTATATAC+AGG 0.439760 7_3:-21260073 Msa1096620:intron
GTCTGGGTTAAGCTGTCCTT+TGG 0.440910 7_3:+21261226 None:intergenic
TTGTAATTGTATATAACCTT+AGG 0.442094 7_3:-21258157 Msa1096620:three_prime_UTR
TTACTGATAAACAAATTATG+AGG 0.445606 7_3:-21260281 Msa1096620:CDS
TTTAGTGATAAGTTGGATGA+TGG 0.449996 7_3:-21260433 Msa1096620:CDS
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 7_3:-21262486 Msa1096620:CDS
CATAAAAGCAAATAGATAAG+TGG 0.452901 7_3:+21258962 None:intergenic
ATGATCTTGGTGGCCGTCCT+GGG 0.462970 7_3:-21258896 Msa1096620:CDS
CTCGGTGTGCAAAACAAAGT+TGG 0.468884 7_3:+21258325 None:intergenic
GCAATATGGTGAAAGAAAAT+GGG 0.474578 7_3:-21262516 Msa1096620:CDS
CCTCCCTCAGGTATCTCGTC+AGG 0.476130 7_3:+21260246 None:intergenic
ATGATTAAAGGAAACTGATA+AGG 0.479594 7_3:-21262547 Msa1096620:intron
ATCGAAAATTTAAACAGCGT+TGG 0.484696 7_3:-21259567 Msa1096620:CDS
ATAAGGTTGGTGAAGCAATA+TGG 0.490665 7_3:-21262530 Msa1096620:CDS
GTCATGATCTTAAGAAAAGA+AGG 0.490748 7_3:+21258672 None:intergenic
CTTCATAGATAATGCAAGAT+GGG 0.490793 7_3:-21261185 Msa1096620:CDS
CTTGCAGAAATATGCAGCAC+AGG 0.492843 7_3:-21258748 Msa1096620:intron
TCCTGTTAGTTTGGATGTAG+AGG 0.492884 7_3:-21261696 Msa1096620:CDS
TCACGCGAAGACAATGCATT+TGG 0.493004 7_3:+21263606 None:intergenic
TCGGTGTGCAAAACAAAGTT+GGG 0.496240 7_3:+21258326 None:intergenic
AGAGGACATTAGAAATGAAA+AGG 0.504615 7_3:-21261678 Msa1096620:intron
GACAGAAGGGAAGATGATCT+TGG 0.506460 7_3:-21258909 Msa1096620:CDS
TGCAAATGGTTGCTGCAGAT+TGG 0.511099 7_3:-21258941 Msa1096620:CDS
GACTTAACAGTTCTCTGAGT+TGG 0.513256 7_3:+21260029 None:intergenic
TTAAGAAAAGAAGGATTCAA+AGG 0.515731 7_3:+21258681 None:intergenic
CCGTCCTGGGAGCATTATGC+AGG 0.517123 7_3:-21258883 Msa1096620:intron
TAGATAATGCAAGATGGGAT+GGG 0.518772 7_3:-21261180 Msa1096620:CDS
CTGGTGGATACTGGAAAGCC+AGG 0.518819 7_3:-21260186 Msa1096620:CDS
GGCAGCCGCGGCAAATGTCT+GGG 0.520346 7_3:+21261210 None:intergenic
GTGTGAGGCGTTCCTCCCTC+AGG 0.520495 7_3:+21260234 None:intergenic
TGTATTGCCTCGACCACAAA+GGG 0.520587 7_3:+21261941 None:intergenic
AATACTAGTCCTCTTTGCAA+TGG 0.521201 7_3:-21261723 Msa1096620:CDS
ATCTATGAAGTGGGCAGCCG+CGG 0.523740 7_3:+21261198 None:intergenic
CTATCTTGGAAAAGAGCTTG+TGG 0.529498 7_3:-21262004 Msa1096620:CDS
TTTGTTGTACATCAGGTGAC+TGG 0.533031 7_3:-21260083 Msa1096620:intron
TAAGAAAAGAAGGATTCAAA+GGG 0.534209 7_3:+21258682 None:intergenic
AGGCAACTTATAATTGCCTA+AGG 0.535020 7_3:+21258141 None:intergenic
TTAAAGGAAACTGATAAGGT+TGG 0.535969 7_3:-21262543 Msa1096620:intron
TCTATAGCTGCAAATTGAAG+TGG 0.536075 7_3:+21258190 None:intergenic
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 7_3:-21262487 Msa1096620:CDS
ATCTTGCATTATCTATGAAG+TGG 0.550073 7_3:+21261188 None:intergenic
ATAGATAATGCAAGATGGGA+TGG 0.550173 7_3:-21261181 Msa1096620:CDS
TTGGTACTGAAGGACGTGGC+AGG 0.552068 7_3:-21261885 Msa1096620:intron
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 7_3:-21262482 Msa1096620:CDS
AGAAATATGCAGCACAGGGT+GGG 0.567302 7_3:-21258743 Msa1096620:CDS
CTCACCTCAACTCTGTCACC+TGG 0.571511 7_3:+21260168 None:intergenic
AAACACATTGTTCAAAATAG+GGG 0.579686 7_3:+21260397 None:intergenic
ATGCAACACCTCCTTTGGTG+TGG 0.579760 7_3:+21261278 None:intergenic
ACTTCATAGATAATGCAAGA+TGG 0.584523 7_3:-21261186 Msa1096620:CDS
ATTGGTTGAGATCTGACAGA+AGG 0.589843 7_3:-21258923 Msa1096620:CDS
CAGAAATATGCAGCACAGGG+TGG 0.591099 7_3:-21258744 Msa1096620:CDS
CAGGAGTTTCCATTGCAAAG+AGG 0.596729 7_3:+21261714 None:intergenic
AGATAATGCAAGATGGGATG+GGG 0.599941 7_3:-21261179 Msa1096620:intron
TTGGTTGAGATCTGACAGAA+GGG 0.602460 7_3:-21258922 Msa1096620:CDS
TGATGACAAAACTGTACCAA+AGG 0.605343 7_3:-21261242 Msa1096620:CDS
TCAACCTGCATAATGCTCCC+AGG 0.618526 7_3:+21258879 None:intergenic
TCTTGCATTATCTATGAAGT+GGG 0.621537 7_3:+21261189 None:intergenic
TATAAGAACCACACCAAAGG+AGG 0.626156 7_3:-21261286 Msa1096620:CDS
CAATATAAGAACCACACCAA+AGG 0.636895 7_3:-21261289 Msa1096620:CDS
AAAGCCAGGTGACAGAGTTG+AGG 0.641668 7_3:-21260172 Msa1096620:intron
TTGTTGCTAATCTTCCACCT+CGG 0.643102 7_3:+21258307 None:intergenic
ATGTATTGCCTCGACCACAA+AGG 0.643641 7_3:+21261940 None:intergenic
ACTATTGCATGACAAACTGG+TGG 0.645480 7_3:-21260202 Msa1096620:CDS
ATACAGGGCTATGAATGTCA+AGG 0.646972 7_3:-21260057 Msa1096620:CDS
TATGAGACCGATTAAACTCG+AGG 0.649881 7_3:-21261326 Msa1096620:CDS
TTGCAGAAATATGCAGCACA+GGG 0.650088 7_3:-21258747 Msa1096620:intron
CCTGCATAATGCTCCCAGGA+CGG 0.650448 7_3:+21258883 None:intergenic
AAAATAGGGGCTAATGACCA+TGG 0.654888 7_3:+21260410 None:intergenic
CAGGGCTATGAATGTCAAGG+TGG 0.661008 7_3:-21260054 Msa1096620:CDS
TCAGGTGACTGGTATATACA+GGG 0.661864 7_3:-21260072 Msa1096620:intron
AATAGTAAGCTAACAGTGTG+AGG 0.667908 7_3:+21260219 None:intergenic
AGGGCTATGAATGTCAAGGT+GGG 0.671069 7_3:-21260053 Msa1096620:CDS
AGAAGGGAAGATGATCTTGG+TGG 0.671197 7_3:-21258906 Msa1096620:CDS
CTTAACCCAGACATTTGCCG+CGG 0.676329 7_3:-21261215 Msa1096620:CDS
GACACCTGACGAGATACCTG+AGG 0.684151 7_3:-21260250 Msa1096620:CDS
ACACCTGACGAGATACCTGA+GGG 0.690721 7_3:-21260249 Msa1096620:CDS
GATAAGTTGGATGATGGCCA+TGG 0.693235 7_3:-21260427 Msa1096620:CDS
CCTGACGAGATACCTGAGGG+AGG 0.736290 7_3:-21260246 Msa1096620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTATTTAAACTATAC+TGG - chr7_3:21261302-21261321 Msa1096620:CDS 10.0%
!! ATAATTATTTAAACTATACT+GGG - chr7_3:21261303-21261322 Msa1096620:CDS 10.0%
!! TATAACTTACATATTTGAAA+TGG + chr7_3:21258727-21258746 None:intergenic 15.0%
!!! TGGTTATATACTTTTTTTAT+AGG - chr7_3:21260116-21260135 Msa1096620:intron 15.0%
!!! ATTTAAAACAGATGAATTAA+AGG + chr7_3:21260358-21260377 None:intergenic 15.0%
!!! TTCTTATTTTATATCAAATG+AGG + chr7_3:21260911-21260930 None:intergenic 15.0%
!!! TTTTTTTTTGCTAAATTAGA+CGG - chr7_3:21261203-21261222 Msa1096620:CDS 15.0%
!! ATCAATATATTTATCATACA+GGG + chr7_3:21261930-21261949 None:intergenic 15.0%
!!! AAAGAAAGGTTTTAAAATTT+TGG - chr7_3:21262386-21262405 Msa1096620:intron 15.0%
!! ATATATAAGTAATTACTTGA+TGG + chr7_3:21262948-21262967 None:intergenic 15.0%
!! GAAATTGATTACTTTGAATT+TGG - chr7_3:21258127-21258146 Msa1096620:three_prime_UTR 20.0%
!! ATTACTTTGAATTTGGATAT+GGG - chr7_3:21258134-21258153 Msa1096620:three_prime_UTR 20.0%
!!! ATCTAAGATTTGATATGTTA+TGG - chr7_3:21258424-21258443 Msa1096620:intron 20.0%
!! ATATTTGTTTATACGCTTAA+AGG + chr7_3:21258504-21258523 None:intergenic 20.0%
!! TACCAAACTAAATATAAACA+TGG - chr7_3:21258745-21258764 Msa1096620:intron 20.0%
!! ATCCATGTTTATATTTAGTT+TGG + chr7_3:21258750-21258769 None:intergenic 20.0%
!! AAAATTTCCAAGATAATATC+CGG + chr7_3:21258773-21258792 None:intergenic 20.0%
!! CAAAATAAAAAAAAGTGACA+GGG + chr7_3:21258889-21258908 None:intergenic 20.0%
!! TCAAAATAAAAAAAAGTGAC+AGG + chr7_3:21258890-21258909 None:intergenic 20.0%
!!! AATGATTTTCTTGATTACTA+AGG - chr7_3:21259026-21259045 Msa1096620:intron 20.0%
!! TTATTTGGTATGATGATTAA+AGG - chr7_3:21259205-21259224 Msa1096620:intron 20.0%
!!! TCTATTTTCATAAGCTATAT+TGG - chr7_3:21259537-21259556 Msa1096620:CDS 20.0%
!!! GTAAAGTGCTTTATTTAAAA+TGG - chr7_3:21259714-21259733 Msa1096620:CDS 20.0%
!! CAAAAATTAGATTTGAGAAT+CGG + chr7_3:21259802-21259821 None:intergenic 20.0%
!!! CACTTTTTATGATCTTAAAA+TGG - chr7_3:21259928-21259947 Msa1096620:intron 20.0%
!!! TTTCTACTTATATTTAAGGT+CGG + chr7_3:21260172-21260191 None:intergenic 20.0%
!! AACCTTTCTACTTATATTTA+AGG + chr7_3:21260176-21260195 None:intergenic 20.0%
!!! GATACTTTATTTAGTACAAA+AGG + chr7_3:21260774-21260793 None:intergenic 20.0%
!! TTGACTTTGATGTTATATAT+TGG + chr7_3:21260798-21260817 None:intergenic 20.0%
!!! AGATTTTTAAGTATTTGAGA+TGG - chr7_3:21261083-21261102 Msa1096620:intron 20.0%
!! AAAACACATTGTTCAAAATA+GGG + chr7_3:21261371-21261390 None:intergenic 20.0%
!!! AACATATCTTTTCTAATTTC+AGG - chr7_3:21261459-21261478 Msa1096620:intron 20.0%
!! TTACTGATAAACAAATTATG+AGG - chr7_3:21261483-21261502 Msa1096620:intron 20.0%
!! CATCAATATATTTATCATAC+AGG + chr7_3:21261931-21261950 None:intergenic 20.0%
!! ATAAATATATTGATGAGCAT+GGG - chr7_3:21261936-21261955 Msa1096620:CDS 20.0%
!!! TATGTGTTGTTTAATTTTTC+AGG - chr7_3:21262135-21262154 Msa1096620:intron 20.0%
!! AAATCCATGATTTACTAAAA+AGG + chr7_3:21263193-21263212 None:intergenic 20.0%
!!! CTTTGAAATTAGCATAATTT+CGG - chr7_3:21263245-21263264 Msa1096620:intron 20.0%
!! TTCGTAGCTATTATTATATT+TGG - chr7_3:21263312-21263331 Msa1096620:intron 20.0%
!! TTAACAGTAAAAGATTAGAA+TGG + chr7_3:21263353-21263372 None:intergenic 20.0%
!! TTGTAATTGTATATAACCTT+AGG - chr7_3:21263607-21263626 Msa1096620:intron 20.0%
!!! TGAATCCATTGATTTTAATT+AGG + chr7_3:21263652-21263671 None:intergenic 20.0%
!!! CATATCAATTTTTCTTAACT+GGG + chr7_3:21263707-21263726 None:intergenic 20.0%
!! TGATTCAATCATAGGTTTTA+TGG - chr7_3:21258051-21258070 Msa1096620:three_prime_UTR 25.0%
! GATTACTTTGAATTTGGATA+TGG - chr7_3:21258133-21258152 Msa1096620:three_prime_UTR 25.0%
! CTTCAATTTATATGTCTTTG+TGG - chr7_3:21258220-21258239 Msa1096620:three_prime_UTR 25.0%
! GAACATAAAATTCACTCAAT+TGG + chr7_3:21258305-21258324 None:intergenic 25.0%
!! ATTGAGTGAATTTTATGTTC+AGG - chr7_3:21258305-21258324 Msa1096620:exon 25.0%
!! AACCTTTTTATTCACTATGT+TGG + chr7_3:21258393-21258412 None:intergenic 25.0%
! ACTAAATATAAACATGGATC+CGG - chr7_3:21258751-21258770 Msa1096620:intron 25.0%
!! TCAAGAAAATCATTCTTTTG+AGG + chr7_3:21259020-21259039 None:intergenic 25.0%
!!! TTTGTTTTGTTGTTTGATTG+TGG - chr7_3:21259090-21259109 Msa1096620:intron 25.0%
! ATGATTAAAGGAAACTGATA+AGG - chr7_3:21259217-21259236 Msa1096620:intron 25.0%
! ACTTATATGATAAGTGTGAA+TGG + chr7_3:21259451-21259470 None:intergenic 25.0%
!! TTGATATTCTCAGAAGATTT+TGG - chr7_3:21259860-21259879 Msa1096620:intron 25.0%
!! AAAAAGTGTAAATGTTGCAA+AGG + chr7_3:21259916-21259935 None:intergenic 25.0%
! GACCTTAAATATAAGTAGAA+AGG - chr7_3:21260171-21260190 Msa1096620:intron 25.0%
!! ACAAATACATGTACCTTTTT+CGG - chr7_3:21260208-21260227 Msa1096620:CDS 25.0%
! ACTTTCTTCTCAAAATCATT+TGG - chr7_3:21260284-21260303 Msa1096620:CDS 25.0%
! CTTTCTTCTCAAAATCATTT+GGG - chr7_3:21260285-21260304 Msa1096620:CDS 25.0%
! ATAACATCAAAGTCAATAGT+AGG - chr7_3:21260802-21260821 Msa1096620:intron 25.0%
!! TCTCAATGACTACAAAATTT+TGG - chr7_3:21260871-21260890 Msa1096620:intron 25.0%
! TAAAAGAGATGGGAAAATAT+TGG + chr7_3:21261116-21261135 None:intergenic 25.0%
! AAACACATTGTTCAAAATAG+GGG + chr7_3:21261370-21261389 None:intergenic 25.0%
! CAAAACACATTGTTCAAAAT+AGG + chr7_3:21261372-21261391 None:intergenic 25.0%
!!! CTATTTTGAACAATGTGTTT+TGG - chr7_3:21261370-21261389 Msa1096620:intron 25.0%
! ATATTCTCATGTTTGTTCAA+TGG - chr7_3:21261646-21261665 Msa1096620:intron 25.0%
! GATAAATATATTGATGAGCA+TGG - chr7_3:21261935-21261954 Msa1096620:CDS 25.0%
! TAAATATATTGATGAGCATG+GGG - chr7_3:21261937-21261956 Msa1096620:CDS 25.0%
! AGAGTTTCACATTAATAAGA+TGG + chr7_3:21262307-21262326 None:intergenic 25.0%
! TGTTTAAGAATCCGAAAAAA+GGG - chr7_3:21262550-21262569 Msa1096620:intron 25.0%
! CTGTATTGTGAAATCTTTAA+AGG - chr7_3:21262718-21262737 Msa1096620:intron 25.0%
! GAAAAAAATCTGATTGGTAA+AGG + chr7_3:21262752-21262771 None:intergenic 25.0%
! GTGAATGAAAAAAATCTGAT+TGG + chr7_3:21262758-21262777 None:intergenic 25.0%
! CATAAAAGCAAATAGATAAG+TGG + chr7_3:21262805-21262824 None:intergenic 25.0%
!!! TCTATTTGCTTTTATGCAAA+TGG - chr7_3:21262809-21262828 Msa1096620:CDS 25.0%
!! TTTTTCATTGTAAACATCTG+TGG - chr7_3:21263050-21263069 Msa1096620:intron 25.0%
! TAAGAAAAGAAGGATTCAAA+GGG + chr7_3:21263085-21263104 None:intergenic 25.0%
! TTAAGAAAAGAAGGATTCAA+AGG + chr7_3:21263086-21263105 None:intergenic 25.0%
! AAAGAAACCTACTTTAGATA+TGG + chr7_3:21263122-21263141 None:intergenic 25.0%
!!! CTTTCCTTTTTAGTAAATCA+TGG - chr7_3:21263186-21263205 Msa1096620:intron 25.0%
! TTAATCATGAAATTGCAAGT+TGG - chr7_3:21263211-21263230 Msa1096620:intron 25.0%
! AATTAATCAAAGTTCTCAAG+TGG - chr7_3:21263274-21263293 Msa1096620:intron 25.0%
!!! CATTGATTTTAATTAGGCAA+AGG + chr7_3:21263646-21263665 None:intergenic 25.0%
! CTTTGCCTAATTAAAATCAA+TGG - chr7_3:21263644-21263663 Msa1096620:CDS 25.0%
!! GCATATCAATTTTTCTTAAC+TGG + chr7_3:21263708-21263727 None:intergenic 25.0%
!! TTTATTGCAGCAGTTGATAA+AGG - chr7_3:21258351-21258370 Msa1096620:intron 30.0%
TGCCAACATAGTGAATAAAA+AGG - chr7_3:21258388-21258407 Msa1096620:intron 30.0%
TCTCGCATAAACATATATGT+TGG - chr7_3:21258598-21258617 Msa1096620:intron 30.0%
! TCTTTGAAAGAGTTGCTTTA+TGG - chr7_3:21258666-21258685 Msa1096620:CDS 30.0%
!! AATGTTTTCTGTTACTTGAC+AGG - chr7_3:21258913-21258932 Msa1096620:CDS 30.0%
!! ATGTTTTCTGTTACTTGACA+GGG - chr7_3:21258914-21258933 Msa1096620:CDS 30.0%
!!! TTGTTGTTTGATTGTGGTTT+TGG - chr7_3:21259096-21259115 Msa1096620:intron 30.0%
TTAAAGGAAACTGATAAGGT+TGG - chr7_3:21259221-21259240 Msa1096620:intron 30.0%
AGCAATATGGTGAAAGAAAA+TGG - chr7_3:21259247-21259266 Msa1096620:intron 30.0%
GCAATATGGTGAAAGAAAAT+GGG - chr7_3:21259248-21259267 Msa1096620:intron 30.0%
CTTTAACAAGATCATTCAAG+CGG - chr7_3:21259351-21259370 Msa1096620:intron 30.0%
!! AACAATCCTAGAAGTGTTTA+TGG - chr7_3:21259628-21259647 Msa1096620:intron 30.0%
TAATTAGACCATGTTTGGAT+TGG + chr7_3:21259675-21259694 None:intergenic 30.0%
ACAGATAATTAGACCATGTT+TGG + chr7_3:21259680-21259699 None:intergenic 30.0%
TATAGAATCGATCACTATCT+TGG - chr7_3:21259746-21259765 Msa1096620:intron 30.0%
! ATCTAATTTTTGACCCTTTG+TGG - chr7_3:21259810-21259829 Msa1096620:intron 30.0%
TGTAGGTACTTTGACAATTA+TGG - chr7_3:21259982-21260001 Msa1096620:intron 30.0%
AGAGGACATTAGAAATGAAA+AGG - chr7_3:21260086-21260105 Msa1096620:intron 30.0%
AGAAATGAAAAGGTCTCATA+TGG - chr7_3:21260096-21260115 Msa1096620:intron 30.0%
! TACTTATATTTAAGGTCGGA+GGG + chr7_3:21260168-21260187 None:intergenic 30.0%
!!! ACCTTTTTCGGTTAAATGTA+AGG - chr7_3:21260220-21260239 Msa1096620:CDS 30.0%
CATGACTTTCAATTGCTTAA+TGG - chr7_3:21260391-21260410 Msa1096620:CDS 30.0%
!! TACAGTTTTGTCATCAATGT+AGG + chr7_3:21260518-21260537 None:intergenic 30.0%
TCTTGCATTATCTATGAAGT+GGG + chr7_3:21260578-21260597 None:intergenic 30.0%
ATCTTGCATTATCTATGAAG+TGG + chr7_3:21260579-21260598 None:intergenic 30.0%
ACTTCATAGATAATGCAAGA+TGG - chr7_3:21260578-21260597 Msa1096620:intron 30.0%
CTTCATAGATAATGCAAGAT+GGG - chr7_3:21260579-21260598 Msa1096620:intron 30.0%
TAGAAGATCGTGAAAATTTG+CGG - chr7_3:21260688-21260707 Msa1096620:intron 30.0%
TGTATTCTGTATTGTGACAT+TGG + chr7_3:21260850-21260869 None:intergenic 30.0%
!! CTTGTTATTATGCATCAGAT+AGG + chr7_3:21261053-21261072 None:intergenic 30.0%
TAACCAAGAAACACTTATTC+TGG + chr7_3:21261176-21261195 None:intergenic 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - chr7_3:21261324-21261343 Msa1096620:CDS 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - chr7_3:21261331-21261350 Msa1096620:CDS 30.0%
!!! TGGATTTTAGTTCATAAACC+TGG - chr7_3:21261425-21261444 Msa1096620:intron 30.0%
ATATGTTAATTGCAGTTTCC+AGG + chr7_3:21261446-21261465 None:intergenic 30.0%
TAAACAAATTATGAGGCTTC+AGG - chr7_3:21261490-21261509 Msa1096620:intron 30.0%
! ATCTATTTATCAGAGTGTCA+TGG + chr7_3:21261628-21261647 None:intergenic 30.0%
ATGTACAACAAAACACTCAT+GGG + chr7_3:21261673-21261692 None:intergenic 30.0%
AGACAAGATGAAAAATGCAA+AGG + chr7_3:21261813-21261832 None:intergenic 30.0%
! TGAATCATGCCAACTTTTAA+GGG + chr7_3:21261863-21261882 None:intergenic 30.0%
! ATGAATCATGCCAACTTTTA+AGG + chr7_3:21261864-21261883 None:intergenic 30.0%
AACAATTGACAACAAATGCA+GGG + chr7_3:21262095-21262114 None:intergenic 30.0%
AAACAATTGACAACAAATGC+AGG + chr7_3:21262096-21262115 None:intergenic 30.0%
!! TTTTCAGGAAATATACAGTC+TGG - chr7_3:21262150-21262169 Msa1096620:intron 30.0%
ATCGAAAATTTAAACAGCGT+TGG - chr7_3:21262197-21262216 Msa1096620:intron 30.0%
GTTGGTTATCTACTCAAAAA+AGG - chr7_3:21262215-21262234 Msa1096620:intron 30.0%
TATTATCCTCTTTGTACTCA+CGG - chr7_3:21262439-21262458 Msa1096620:intron 30.0%
GTGTTTAAGAATCCGAAAAA+AGG - chr7_3:21262549-21262568 Msa1096620:intron 30.0%
! AGCACATTCTTAAAGTATTC+CGG + chr7_3:21262607-21262626 None:intergenic 30.0%
TCATCGAATATGCAATTTCA+AGG - chr7_3:21262644-21262663 Msa1096620:intron 30.0%
CATCGAATATGCAATTTCAA+GGG - chr7_3:21262645-21262664 Msa1096620:intron 30.0%
ATCGAATATGCAATTTCAAG+GGG - chr7_3:21262646-21262665 Msa1096620:intron 30.0%
AGCAAATAGATAAGTGGTTA+AGG + chr7_3:21262799-21262818 None:intergenic 30.0%
GTCATGATCTTAAGAAAAGA+AGG + chr7_3:21263095-21263114 None:intergenic 30.0%
! CAATTTTTCTTAACTGGGTT+CGG + chr7_3:21263702-21263721 None:intergenic 30.0%
ATAAAAGAAGCTTGCAGTTC+TGG + chr7_3:21258336-21258355 None:intergenic 35.0%
! TTGAGTTGTAAACTGTCAAC+GGG + chr7_3:21258566-21258585 None:intergenic 35.0%
! GTTGAGTTGTAAACTGTCAA+CGG + chr7_3:21258567-21258586 None:intergenic 35.0%
TTGACAGTTTACAACTCAAC+AGG - chr7_3:21258567-21258586 Msa1096620:intron 35.0%
TGACAGTTTACAACTCAACA+GGG - chr7_3:21258568-21258587 Msa1096620:intron 35.0%
!! ATTCTGAAGCGTGTAGAAAA+AGG - chr7_3:21258963-21258982 Msa1096620:CDS 35.0%
ACTAAGGTAGCAGTTTATGT+TGG - chr7_3:21259042-21259061 Msa1096620:intron 35.0%
!! TAGCAGTTTATGTTGGTTTG+AGG - chr7_3:21259049-21259068 Msa1096620:intron 35.0%
TGAGGTTATGAGATGGTTAT+TGG - chr7_3:21259067-21259086 Msa1096620:intron 35.0%
!! ATAAGGTTGGTGAAGCAATA+TGG - chr7_3:21259234-21259253 Msa1096620:intron 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr7_3:21259273-21259292 Msa1096620:intron 35.0%
! TGACTGAGGATCAAATTTTC+AGG - chr7_3:21259378-21259397 Msa1096620:intron 35.0%
AACTACACTTTGACTGTGTT+TGG - chr7_3:21259407-21259426 Msa1096620:intron 35.0%
!! ACACTTCTAGGATTGTTTGA+AGG + chr7_3:21259625-21259644 None:intergenic 35.0%
CAAACAATCCAATCCAAACA+TGG - chr7_3:21259664-21259683 Msa1096620:intron 35.0%
!! TCAGAAGATTTTGGTACTGA+AGG - chr7_3:21259869-21259888 Msa1096620:intron 35.0%
TTCATATCTGTTCCATGTGT+AGG - chr7_3:21259965-21259984 Msa1096620:intron 35.0%
! ATTGTCAAAGTACCTACACA+TGG + chr7_3:21259980-21259999 None:intergenic 35.0%
AATACTAGTCCTCTTTGCAA+TGG - chr7_3:21260041-21260060 Msa1096620:CDS 35.0%
AATGGAAACTCCTGTTAGTT+TGG - chr7_3:21260059-21260078 Msa1096620:CDS 35.0%
! CTACTTATATTTAAGGTCGG+AGG + chr7_3:21260169-21260188 None:intergenic 35.0%
GCCTTACATTTAACCGAAAA+AGG + chr7_3:21260224-21260243 None:intergenic 35.0%
! TTTTCGGTTAAATGTAAGGC+CGG - chr7_3:21260224-21260243 Msa1096620:CDS 35.0%
!! TGATTTTGAGAAGAAAGTCC+AGG + chr7_3:21260282-21260301 None:intergenic 35.0%
TCTTCTCAAAATCATTTGGG+TGG - chr7_3:21260288-21260307 Msa1096620:intron 35.0%
! TCAATTGCTTAATGGATGTC+AGG - chr7_3:21260399-21260418 Msa1096620:CDS 35.0%
ACTACATCCTCGAGTTTAAT+CGG + chr7_3:21260448-21260467 None:intergenic 35.0%
! AAACTCGAGGATGTAGTTTT+AGG - chr7_3:21260451-21260470 Msa1096620:intron 35.0%
! CTTTGGTGTGGTTCTTATAT+TGG + chr7_3:21260477-21260496 None:intergenic 35.0%
CAATATAAGAACCACACCAA+AGG - chr7_3:21260475-21260494 Msa1096620:intron 35.0%
TGATGACAAAACTGTACCAA+AGG - chr7_3:21260522-21260541 Msa1096620:intron 35.0%
ATAGATAATGCAAGATGGGA+TGG - chr7_3:21260583-21260602 Msa1096620:intron 35.0%
TAGATAATGCAAGATGGGAT+GGG - chr7_3:21260584-21260603 Msa1096620:intron 35.0%
!!! TACCTTTTTTGATGAAGGCT+GGG - chr7_3:21260608-21260627 Msa1096620:intron 35.0%
TATTCCTTTCACTTACCTCT+TGG + chr7_3:21260647-21260666 None:intergenic 35.0%
!! TTGTGACATTGGTTTGATGT+TGG + chr7_3:21260839-21260858 None:intergenic 35.0%
GATCTCAGCTTAAAAGAGAT+GGG + chr7_3:21261126-21261145 None:intergenic 35.0%
TGATCTCAGCTTAAAAGAGA+TGG + chr7_3:21261127-21261146 None:intergenic 35.0%
! TCTCTTTTAAGCTGAGATCA+AGG - chr7_3:21261127-21261146 Msa1096620:intron 35.0%
! CTCTTTTAAGCTGAGATCAA+GGG - chr7_3:21261128-21261147 Msa1096620:intron 35.0%
ATGCCAGAATAAGTGTTTCT+TGG - chr7_3:21261170-21261189 Msa1096620:intron 35.0%
!! GTTTTGGTCATGTGACTATT+TGG - chr7_3:21261386-21261405 Msa1096620:intron 35.0%
!! TCATGTGACTATTTGGTGTA+AGG - chr7_3:21261393-21261412 Msa1096620:intron 35.0%
! TTGGTGTAAGGTTTTTCACT+TGG - chr7_3:21261405-21261424 Msa1096620:intron 35.0%
AATAGTAAGCTAACAGTGTG+AGG + chr7_3:21261548-21261567 None:intergenic 35.0%
CTTACTATTGCATGACAAAC+TGG - chr7_3:21261559-21261578 Msa1096620:intron 35.0%
GATGTACAACAAAACACTCA+TGG + chr7_3:21261674-21261693 None:intergenic 35.0%
!! TGAGTGTTTTGTTGTACATC+AGG - chr7_3:21261674-21261693 Msa1096620:intron 35.0%
!!! GACATTTGTTTTGTTCCGTT+TGG - chr7_3:21261837-21261856 Msa1096620:intron 35.0%
!!! TTGTTGATTTTGGTTGAAGC+AGG - chr7_3:21261960-21261979 Msa1096620:CDS 35.0%
!!! TGTTGATTTTGGTTGAAGCA+GGG - chr7_3:21261961-21261980 Msa1096620:CDS 35.0%
TCTTAATAAGCAATCAGAGC+TGG - chr7_3:21262024-21262043 Msa1096620:intron 35.0%
!! TCGATGAAAGTATCCATATC+AGG + chr7_3:21262182-21262201 None:intergenic 35.0%
AAAAGGACCAAAGACATATC+AGG - chr7_3:21262232-21262251 Msa1096620:intron 35.0%
! TTTTACTCTCCACTCTATAG+AGG - chr7_3:21262266-21262285 Msa1096620:intron 35.0%
TCAAACAAACCTCTATAGAG+TGG + chr7_3:21262278-21262297 None:intergenic 35.0%
! GGTAAGGCATTATAGATTCT+TGG + chr7_3:21262338-21262357 None:intergenic 35.0%
AACCTTTCTTTCCCTTATAG+AGG + chr7_3:21262377-21262396 None:intergenic 35.0%
TAATACCTGCATGTGTCAAA+AGG + chr7_3:21262424-21262443 None:intergenic 35.0%
!!! GATAAGGTACACCCTTTTTT+CGG + chr7_3:21262564-21262583 None:intergenic 35.0%
GGGAACTTTGGTATAAGATA+AGG + chr7_3:21262580-21262599 None:intergenic 35.0%
! TCTTAAAGTATTCCGGGAAA+GGG + chr7_3:21262600-21262619 None:intergenic 35.0%
! TTCTTAAAGTATTCCGGGAA+AGG + chr7_3:21262601-21262620 None:intergenic 35.0%
! GCACATTCTTAAAGTATTCC+GGG + chr7_3:21262606-21262625 None:intergenic 35.0%
AAATTAATGTTGTGCCTGTC+AGG - chr7_3:21263397-21263416 Msa1096620:intron 35.0%
AATTAATGTTGTGCCTGTCA+GGG - chr7_3:21263398-21263417 Msa1096620:intron 35.0%
TTGAAGATCAATGCACTTGA+AGG - chr7_3:21263484-21263503 Msa1096620:intron 35.0%
TCTATAGCTGCAAATTGAAG+TGG + chr7_3:21263577-21263596 None:intergenic 35.0%
AGGCAACTTATAATTGCCTA+AGG + chr7_3:21263626-21263645 None:intergenic 35.0%
TGAGTTGTAAACTGTCAACG+GGG + chr7_3:21258565-21258584 None:intergenic 40.0%
CATGGATCCGGATATTATCT+TGG - chr7_3:21258763-21258782 Msa1096620:intron 40.0%
TTGAAGAATGAGCAGCATGA+AGG + chr7_3:21258847-21258866 None:intergenic 40.0%
GTGACAGGGAACATATCATT+AGG + chr7_3:21258875-21258894 None:intergenic 40.0%
TGAAGCGTGTAGAAAAAGGT+TGG - chr7_3:21258967-21258986 Msa1096620:CDS 40.0%
GAAGCGTGTAGAAAAAGGTT+GGG - chr7_3:21258968-21258987 Msa1096620:CDS 40.0%
AAGCGTGTAGAAAAAGGTTG+GGG - chr7_3:21258969-21258988 Msa1096620:CDS 40.0%
!! GTTGGTTTGAGGTTATGAGA+TGG - chr7_3:21259060-21259079 Msa1096620:intron 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr7_3:21259277-21259296 Msa1096620:intron 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr7_3:21259278-21259297 Msa1096620:intron 40.0%
TGATCTTGTTAAAGCAGCTG+AGG + chr7_3:21259345-21259364 None:intergenic 40.0%
CTATCTTGGAAAAGAGCTTG+TGG - chr7_3:21259760-21259779 Msa1096620:intron 40.0%
! TCCTGTTAGTTTGGATGTAG+AGG - chr7_3:21260068-21260087 Msa1096620:CDS 40.0%
TCCTCTACATCCAAACTAAC+AGG + chr7_3:21260072-21260091 None:intergenic 40.0%
CTTCTAGCATATACATCCTC+CGG + chr7_3:21260246-21260265 None:intergenic 40.0%
! AGAAGGCAGAGTTTAAAACC+TGG - chr7_3:21260261-21260280 Msa1096620:CDS 40.0%
TATGAGACCGATTAAACTCG+AGG - chr7_3:21260438-21260457 Msa1096620:CDS 40.0%
TATAAGAACCACACCAAAGG+AGG - chr7_3:21260478-21260497 Msa1096620:intron 40.0%
! GTTTTGTCATCAATGTAGGC+TGG + chr7_3:21260514-21260533 None:intergenic 40.0%
AGATAATGCAAGATGGGATG+GGG - chr7_3:21260585-21260604 Msa1096620:intron 40.0%
!!! TGGGGTACCTTTTTTGATGA+AGG - chr7_3:21260603-21260622 Msa1096620:intron 40.0%
!!! GTACCTTTTTTGATGAAGGC+TGG - chr7_3:21260607-21260626 Msa1096620:intron 40.0%
TTCCCAGCCTTCATCAAAAA+AGG + chr7_3:21260613-21260632 None:intergenic 40.0%
AAAATAGGGGCTAATGACCA+TGG + chr7_3:21261357-21261376 None:intergenic 40.0%
ACTATTGCATGACAAACTGG+TGG - chr7_3:21261562-21261581 Msa1096620:intron 40.0%
! TTTGTTGTACATCAGGTGAC+TGG - chr7_3:21261681-21261700 Msa1096620:CDS 40.0%
ATCAGGTGACTGGTATATAC+AGG - chr7_3:21261691-21261710 Msa1096620:CDS 40.0%
TCAGGTGACTGGTATATACA+GGG - chr7_3:21261692-21261711 Msa1096620:CDS 40.0%
ATACAGGGCTATGAATGTCA+AGG - chr7_3:21261707-21261726 Msa1096620:CDS 40.0%
GACTTAACAGTTCTCTGAGT+TGG + chr7_3:21261738-21261757 None:intergenic 40.0%
!!! GTTGATTTTGGTTGAAGCAG+GGG - chr7_3:21261962-21261981 Msa1096620:CDS 40.0%
!!! TTGATTTTGGTTGAAGCAGG+GGG - chr7_3:21261963-21261982 Msa1096620:CDS 40.0%
CTTTCTTTCCCTTATAGAGG+TGG + chr7_3:21262374-21262393 None:intergenic 40.0%
CACCTCTATAAGGGAAAGAA+AGG - chr7_3:21262372-21262391 Msa1096620:intron 40.0%
! ACAATCCTTTTGACACATGC+AGG - chr7_3:21262416-21262435 Msa1096620:intron 40.0%
TATACCAAAGTTCCCTTTCC+CGG - chr7_3:21262585-21262604 Msa1096620:intron 40.0%
ATTGGTTGAGATCTGACAGA+AGG - chr7_3:21262841-21262860 Msa1096620:intron 40.0%
TTGGTTGAGATCTGACAGAA+GGG - chr7_3:21262842-21262861 Msa1096620:intron 40.0%
! AGCATTATGCAGGTTGACTT+TGG - chr7_3:21262891-21262910 Msa1096620:intron 40.0%
TTGCAGAAATATGCAGCACA+GGG - chr7_3:21263017-21263036 Msa1096620:intron 40.0%
! GACTCTGCCATATCTAAAGT+AGG - chr7_3:21263112-21263131 Msa1096620:intron 40.0%
TCAAAGTTCTCAAGTGGCAA+CGG - chr7_3:21263280-21263299 Msa1096620:intron 40.0%
TCGGTGTGCAAAACAAAGTT+GGG + chr7_3:21263441-21263460 None:intergenic 40.0%
TTGTTGCTAATCTTCCACCT+CGG + chr7_3:21263460-21263479 None:intergenic 40.0%
TCACGCGAAGACAATGCATT+TGG + chr7_3:21258161-21258180 None:intergenic 45.0%
CATTGTCTTCGCGTGAGTAT+TGG - chr7_3:21258165-21258184 Msa1096620:three_prime_UTR 45.0%
! AAAGAAGCTTGCAGTTCTGG+AGG + chr7_3:21258333-21258352 None:intergenic 45.0%
!!! CGGGGTGGATTGCTTTTTTT+CGG + chr7_3:21258547-21258566 None:intergenic 45.0%
TGCAATGAGTTCTGCGTCTA+TGG - chr7_3:21258796-21258815 Msa1096620:intron 45.0%
GAATGAGCAGCATGAAGGAA+TGG + chr7_3:21258842-21258861 None:intergenic 45.0%
! CTGTTACTTGACAGGGATGT+TGG - chr7_3:21258921-21258940 Msa1096620:CDS 45.0%
GTAGAAAAAGGTTGGGGTCA+AGG - chr7_3:21258975-21258994 Msa1096620:CDS 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr7_3:21259282-21259301 Msa1096620:intron 45.0%
ATTCAAGCGGTATCTGACTG+AGG - chr7_3:21259364-21259383 Msa1096620:intron 45.0%
GGATTGTTTGAAGGAGCTCA+AGG + chr7_3:21259616-21259635 None:intergenic 45.0%
CCACTGCCATAAACACTTCT+AGG + chr7_3:21259637-21259656 None:intergenic 45.0%
!! CCTAGAAGTGTTTATGGCAG+TGG - chr7_3:21259634-21259653 Msa1096620:intron 45.0%
! TTTTTGACCCTTTGTGGTCG+AGG - chr7_3:21259816-21259835 Msa1096620:intron 45.0%
TGTATTGCCTCGACCACAAA+GGG + chr7_3:21259826-21259845 None:intergenic 45.0%
ATGTATTGCCTCGACCACAA+AGG + chr7_3:21259827-21259846 None:intergenic 45.0%
!! GATTTTGGTACTGAAGGACG+TGG - chr7_3:21259875-21259894 Msa1096620:intron 45.0%
CAGGAGTTTCCATTGCAAAG+AGG + chr7_3:21260053-21260072 None:intergenic 45.0%
CGGAGGATGTATATGCTAGA+AGG - chr7_3:21260244-21260263 Msa1096620:CDS 45.0%
! GCTTAATGGATGTCAGGTCA+AGG - chr7_3:21260405-21260424 Msa1096620:CDS 45.0%
TGGATATGCAACACCTCCTT+TGG + chr7_3:21260494-21260513 None:intergenic 45.0%
!! GGAAAGCATTACACACCAAG+AGG - chr7_3:21260629-21260648 Msa1096620:intron 45.0%
CACACCAAGAGGTAAGTGAA+AGG - chr7_3:21260640-21260659 Msa1096620:intron 45.0%
! GATAAGTTGGATGATGGCCA+TGG - chr7_3:21261337-21261356 Msa1096620:CDS 45.0%
! CATGACAAACTGGTGGATAC+TGG - chr7_3:21261569-21261588 Msa1096620:intron 45.0%
AGGGCTATGAATGTCAAGGT+GGG - chr7_3:21261711-21261730 Msa1096620:CDS 45.0%
TCCGTTTGGCCCTTAAAAGT+TGG - chr7_3:21261851-21261870 Msa1096620:intron 45.0%
!! GCCAACTTTTAAGGGCCAAA+CGG + chr7_3:21261855-21261874 None:intergenic 45.0%
!!! GAGCATGGGGTTGTTGATTT+TGG - chr7_3:21261950-21261969 Msa1096620:CDS 45.0%
AGTCTGGCTGATACCTGATA+TGG - chr7_3:21262166-21262185 Msa1096620:intron 45.0%
CATCGCACCTGATATGTCTT+TGG + chr7_3:21262242-21262261 None:intergenic 45.0%
CTTATAGAGGTGGCTAGGAA+GGG + chr7_3:21262364-21262383 None:intergenic 45.0%
CTTCCTAGCCACCTCTATAA+GGG - chr7_3:21262363-21262382 Msa1096620:intron 45.0%
TTTCCCTTATAGAGGTGGCT+AGG + chr7_3:21262369-21262388 None:intergenic 45.0%
TATTCCGGGAAAGGGAACTT+TGG + chr7_3:21262592-21262611 None:intergenic 45.0%
TGCAAATGGTTGCTGCAGAT+TGG - chr7_3:21262823-21262842 Msa1096620:CDS 45.0%
GACAGAAGGGAAGATGATCT+TGG - chr7_3:21262855-21262874 Msa1096620:intron 45.0%
AGAAGGGAAGATGATCTTGG+TGG - chr7_3:21262858-21262877 Msa1096620:intron 45.0%
!!! GCAGGTTGACTTTGGTGTTT+TGG - chr7_3:21262899-21262918 Msa1096620:intron 45.0%
CTTGCAGAAATATGCAGCAC+AGG - chr7_3:21263016-21263035 Msa1096620:intron 45.0%
AGAAATATGCAGCACAGGGT+GGG - chr7_3:21263021-21263040 Msa1096620:intron 45.0%
GCCTGTCAGGGATATAACTA+TGG - chr7_3:21263410-21263429 Msa1096620:intron 45.0%
GCCATAGTTATATCCCTGAC+AGG + chr7_3:21263414-21263433 None:intergenic 45.0%
! CTCGGTGTGCAAAACAAAGT+TGG + chr7_3:21263442-21263461 None:intergenic 45.0%
!!! CAACTTTGTTTTGCACACCG+AGG - chr7_3:21263440-21263459 Msa1096620:intron 45.0%
!!! TTTTATTAATATGTTTTATT+TGG - chr7_3:21259190-21259209 Msa1096620:intron 5.0%
!! GGTTTTATGGACTGCTGTGC+TGG - chr7_3:21258064-21258083 Msa1096620:three_prime_UTR 50.0%
! ATGGACTGCTGTGCTGGAAT+TGG - chr7_3:21258070-21258089 Msa1096620:three_prime_UTR 50.0%
GTTGTAAACTGTCAACGGGG+TGG + chr7_3:21258562-21258581 None:intergenic 50.0%
TCGGTTAAATGTAAGGCCGG+AGG - chr7_3:21260227-21260246 Msa1096620:CDS 50.0%
TACGCCTCAGCTCATGGTTA+TGG - chr7_3:21260331-21260350 Msa1096620:intron 50.0%
AGGTCCATAACCATGAGCTG+AGG + chr7_3:21260338-21260357 None:intergenic 50.0%
ATGCAACACCTCCTTTGGTG+TGG + chr7_3:21260489-21260508 None:intergenic 50.0%
GTCTGGGTTAAGCTGTCCTT+TGG + chr7_3:21260541-21260560 None:intergenic 50.0%
CTTAACCCAGACATTTGCCG+CGG - chr7_3:21260549-21260568 Msa1096620:intron 50.0%
ACACCTGACGAGATACCTGA+GGG - chr7_3:21261515-21261534 Msa1096620:intron 50.0%
AAAGCCAGGTGACAGAGTTG+AGG - chr7_3:21261592-21261611 Msa1096620:intron 50.0%
CAGGGCTATGAATGTCAAGG+TGG - chr7_3:21261710-21261729 Msa1096620:CDS 50.0%
GGGGATCAGTCAACAGAAAG+AGG - chr7_3:21261982-21262001 Msa1096620:CDS 50.0%
TGGCTAGGAAGGGATAGGTA+AGG + chr7_3:21262354-21262373 None:intergenic 50.0%
CCTTATAGAGGTGGCTAGGA+AGG + chr7_3:21262365-21262384 None:intergenic 50.0%
CCTTCCTAGCCACCTCTATA+AGG - chr7_3:21262362-21262381 Msa1096620:intron 50.0%
TCAACCTGCATAATGCTCCC+AGG + chr7_3:21262888-21262907 None:intergenic 50.0%
CAGAAATATGCAGCACAGGG+TGG - chr7_3:21263020-21263039 Msa1096620:intron 50.0%
!!! CTTTGTTTTGCACACCGAGG+TGG - chr7_3:21263443-21263462 Msa1096620:intron 50.0%
GCAAGCAGTGTAGAGAGCGA+TGG - chr7_3:21259304-21259323 Msa1096620:intron 55.0%
! TTGGTACTGAAGGACGTGGC+AGG - chr7_3:21259879-21259898 Msa1096620:intron 55.0%
TTGAGCTACGCCTCAGCTCA+TGG - chr7_3:21260325-21260344 Msa1096620:intron 55.0%
ATCTATGAAGTGGGCAGCCG+CGG + chr7_3:21260569-21260588 None:intergenic 55.0%
GACACCTGACGAGATACCTG+AGG - chr7_3:21261514-21261533 Msa1096620:intron 55.0%
! CTGGTGGATACTGGAAAGCC+AGG - chr7_3:21261578-21261597 Msa1096620:intron 55.0%
CTCACCTCAACTCTGTCACC+TGG + chr7_3:21261599-21261618 None:intergenic 55.0%
AGAGGTGGCTAGGAAGGGAT+AGG + chr7_3:21262359-21262378 None:intergenic 55.0%
CTGGCTCCGTGAGTACAAAG+AGG + chr7_3:21262448-21262467 None:intergenic 55.0%
GAGCCAGTCGTCTAGGTCAA+GGG - chr7_3:21262461-21262480 Msa1096620:intron 55.0%
AGCCAGTCGTCTAGGTCAAG+GGG - chr7_3:21262462-21262481 Msa1096620:intron 55.0%
! ATGATCTTGGTGGCCGTCCT+GGG - chr7_3:21262868-21262887 Msa1096620:intron 55.0%
CCTGCATAATGCTCCCAGGA+CGG + chr7_3:21262884-21262903 None:intergenic 55.0%
GAGCTGAGGCGTAGCTCAAG+TGG + chr7_3:21260324-21260343 None:intergenic 60.0%
CCTCCCTCAGGTATCTCGTC+AGG + chr7_3:21261521-21261540 None:intergenic 60.0%
CCTGACGAGATACCTGAGGG+AGG - chr7_3:21261518-21261537 Msa1096620:intron 60.0%
ACTCACGGAGCCAGTCGTCT+AGG - chr7_3:21262454-21262473 Msa1096620:intron 60.0%
GGAGCCAGTCGTCTAGGTCA+AGG - chr7_3:21262460-21262479 Msa1096620:intron 60.0%
AGCCCCTTGACCTAGACGAC+TGG + chr7_3:21262467-21262486 None:intergenic 60.0%
! GATGATCTTGGTGGCCGTCC+TGG - chr7_3:21262867-21262886 Msa1096620:intron 60.0%
!! CCGTCCTGGGAGCATTATGC+AGG - chr7_3:21262881-21262900 Msa1096620:intron 60.0%
GGCAGCCGCGGCAAATGTCT+GGG + chr7_3:21260557-21260576 None:intergenic 65.0%
! GTGTGAGGCGTTCCTCCCTC+AGG + chr7_3:21261533-21261552 None:intergenic 65.0%
GGGCAGCCGCGGCAAATGTC+TGG + chr7_3:21260558-21260577 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 21258046 21263740 21258046 ID=Msa1096620;Name=Msa1096620
chr7_3 mRNA 21258046 21263740 21258046 ID=Msa1096620-mRNA-1;Parent=Msa1096620;Name=Msa1096620-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.35|0.33|0.8|0.5|0.66|15|267|491
chr7_3 exon 21258046 21258367 21258046 ID=Msa1096620-mRNA-1:exon:4655;Parent=Msa1096620-mRNA-1
chr7_3 exon 21258657 21258763 21258657 ID=Msa1096620-mRNA-1:exon:4654;Parent=Msa1096620-mRNA-1
chr7_3 exon 21258884 21259003 21258884 ID=Msa1096620-mRNA-1:exon:4653;Parent=Msa1096620-mRNA-1
chr7_3 exon 21259533 21259629 21259533 ID=Msa1096620-mRNA-1:exon:4652;Parent=Msa1096620-mRNA-1
chr7_3 exon 21259714 21259745 21259714 ID=Msa1096620-mRNA-1:exon:4651;Parent=Msa1096620-mRNA-1
chr7_3 exon 21260019 21260090 21260019 ID=Msa1096620-mRNA-1:exon:4650;Parent=Msa1096620-mRNA-1
chr7_3 exon 21260173 21260305 21260173 ID=Msa1096620-mRNA-1:exon:4649;Parent=Msa1096620-mRNA-1
chr7_3 exon 21260390 21260457 21260390 ID=Msa1096620-mRNA-1:exon:4648;Parent=Msa1096620-mRNA-1
chr7_3 exon 21261180 21261365 21261180 ID=Msa1096620-mRNA-1:exon:4647;Parent=Msa1096620-mRNA-1
chr7_3 exon 21261679 21261799 21261679 ID=Msa1096620-mRNA-1:exon:4646;Parent=Msa1096620-mRNA-1
chr7_3 exon 21261886 21262035 21261886 ID=Msa1096620-mRNA-1:exon:4645;Parent=Msa1096620-mRNA-1
chr7_3 exon 21262476 21262559 21262476 ID=Msa1096620-mRNA-1:exon:4644;Parent=Msa1096620-mRNA-1
chr7_3 exon 21262653 21262707 21262653 ID=Msa1096620-mRNA-1:exon:4643;Parent=Msa1096620-mRNA-1
chr7_3 exon 21262787 21262851 21262787 ID=Msa1096620-mRNA-1:exon:4642;Parent=Msa1096620-mRNA-1
chr7_3 exon 21263610 21263740 21263610 ID=Msa1096620-mRNA-1:exon:4641;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21263610 21263740 21263610 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21262787 21262851 21262787 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21262653 21262707 21262653 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21262476 21262559 21262476 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21261886 21262035 21261886 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21261679 21261799 21261679 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21261180 21261365 21261180 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21260390 21260457 21260390 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21260173 21260305 21260173 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21260019 21260090 21260019 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21259714 21259745 21259714 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21259533 21259629 21259533 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21258884 21259003 21258884 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21258657 21258763 21258657 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 CDS 21258313 21258367 21258313 ID=Msa1096620-mRNA-1:cds;Parent=Msa1096620-mRNA-1
chr7_3 three_prime_UTR 21258046 21258312 21258046 ID=Msa1096620-mRNA-1:three_prime_utr;Parent=Msa1096620-mRNA-1
Gene Sequence

>Msa1096620

ATGAATGATTCAATCATAGGTTTTATGGACTGCTGTGCTGGAATTGGTTTCTACAGATCAGTTTTAGTGTTAGATTTTTCTGAAATTGATTACTTTGAATTTGGATATGGGACCAAATGCATTGTCTTCGCGGATGTTGGCAGTAATATCGCATTGAAAATTCTGAAGCGTGTAGAAAAAGGTTGGGGTCAAGGAAATGGTTATTGGTTTGTTTTGTTGTTTGATTGTGGTTTTGGATACACTTTGATCATGAAACTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAAATCGATCACTATCTTGGAAAAGAGCTTGTGGAAAATCTTTTTGTTCTCCGATTCTCAAATCTAATTTTTGACCCTTTGTGGTCGAGGCAATACATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGTACTGAAGGACGTGGCAGGTACTTTGACAATTATGGTATAATTAGAGATATTATGCAGAATCATCTACTTCAAATACTAGTCCTCTTTGCAATGGAAACTCCTGTTAGTTTGGATGTAGAGGACATTAGAAATGAAAAGGTCAAGGTTCTTCGTTCTATGAGACCGATTAAACTCGAGGATGTAGTTTTAGGCCAATATAAGAACCACACCAAAGGAGGTGTTGCATATCCAGCCTACATTGATGACAAAACTGTACCAAAGGACAGCTTAACCCAGACATTTGCCGCGGCTGCCCACTTCATAGATAATGCAAGATGGGATGGGATTTTAGTGATAAGTTGGATGATGGCCATGGTCATTAGCCCCTATTTTGAACAATGTGTTTTGGTCATGTTTACTGATAAACAAATTATGAGGCTTCAGGAGACACCTGACGAGATACCTGAGGGAGGAACGCCTCACACTGTTAGCTTACTATTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAATGTCAAGGTGGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAAGCTGGAACAGAAAGATTTCTTTTCAGTATCTGAAATATACAGTCTGGCTGATACCTGATATGGATACTTTCATCGAAAATTTAAACAGCGTTGGTTATCTACTCAAAAAAGGACCAAAGACATATCAGTTAGAGTTTGAATCCTTAACCACTTATCTATTTGCTTTTATGCAAATGGTTGCTGCAGATTGGTTGAGATCTGACAGAAGGGAAGATGATCTTGGTGGCCGTCCTGGGAGCATTATGCAGAAATATGCAGCACAGGGTGGGCCTGAGTTTTTCATTGTAAACATCTGTGGTGTTGTTCTCCCTTTGAATCCTTCTTTTCTTAAGATCATGACTCTGCCATATCTAAAGGATATAACTATGGCATTTCCCAACTTTGTTTTGCACACCGAGGTGGAAGATTAG

Protein sequence

>Msa1096620

MNDSIIGFMDCCAGIGFYRSVLVLDFSEIDYFEFGYGTKCIVFADVGSNIALKILKRVEKGWGQGNGYWFVLLFDCGFGYTLIMKLIRLVKQYGERKWAQIAEKLEGRVGKQIDHYLGKELVENLFVLRFSNLIFDPLWSRQYIRNVQLIFSEDFGTEGRGRYFDNYGIIRDIMQNHLLQILVLFAMETPVSLDVEDIRNEKVKVLRSMRPIKLEDVVLGQYKNHTKGGVAYPAYIDDKTVPKDSLTQTFAAAAHFIDNARWDGILVISWMMAMVISPYFEQCVLVMFTDKQIMRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMNVKVGPTQRTVKSLFKSWNRKISFQYLKYTVWLIPDMDTFIENLNSVGYLLKKGPKTYQLEFESLTTYLFAFMQMVAADWLRSDRREDDLGGRPGSIMQKYAAQGGPEFFIVNICGVVLPLNPSFLKIMTLPYLKDITMAFPNFVLHTEVED*