Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483120 | MCH88425.1 | 91.228 | 114 | 10 | 0 | 65 | 178 | 49 | 162 | 5.53e-68 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483120 | sp|Q9FY99|G6PD2_ARATH | 85.088 | 114 | 17 | 0 | 65 | 178 | 320 | 433 | 5.51e-62 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483120 | A0A392MMU8 | 91.228 | 114 | 10 | 0 | 65 | 178 | 49 | 162 | 2.64e-68 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0271770 | Msa0483120 | 0.843198 | 1.623638e-58 | -8.615850e-47 |
| Msa0276460 | Msa0483120 | 0.834994 | 2.171850e-56 | -8.615850e-47 |
| Msa0327780 | Msa0483120 | 0.829733 | 4.364784e-55 | -8.615850e-47 |
| Msa0483120 | Msa0771800 | 0.848946 | 4.432575e-60 | -8.615850e-47 |
| Msa0483120 | Msa0852720 | 0.809894 | 1.510241e-50 | -8.615850e-47 |
| Msa0483120 | Msa0888990 | 0.801281 | 9.697372e-49 | -8.615850e-47 |
| Msa0483120 | Msa0944610 | 0.828202 | 1.025082e-54 | -8.615850e-47 |
| Msa0483120 | Msa1096620 | 0.909924 | 3.321157e-82 | -8.615850e-47 |
| Msa0483120 | Msa1098140 | 0.822344 | 2.490471e-53 | -8.615850e-47 |
| Msa0483120 | Msa1155150 | 0.886431 | 3.439824e-72 | -8.615850e-47 |
| Msa0483120 | Msa1227510 | 0.835158 | 1.974500e-56 | -8.615850e-47 |
| Msa0483120 | Msa1274560 | 0.809582 | 1.762308e-50 | -8.615850e-47 |
| Msa0483120 | Msa1454450 | 0.829948 | 3.867038e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483120 | MtrunA17_Chr7g0222441 | 91.228 | 114 | 10 | 0 | 65 | 178 | 319 | 432 | 1.28e-66 | 219 |
| Msa0483120 | MtrunA17_Chr8g0341321 | 82.301 | 113 | 20 | 0 | 66 | 178 | 307 | 419 | 3.87e-59 | 199 |
| Msa0483120 | MtrunA17_Chr8g0358431 | 80.000 | 110 | 22 | 0 | 65 | 174 | 96 | 205 | 3.38e-57 | 183 |
| Msa0483120 | MtrunA17_Chr8g0356701 | 79.348 | 92 | 19 | 0 | 87 | 178 | 1 | 92 | 9.11e-48 | 156 |
| Msa0483120 | MtrunA17_Chr4g0035581 | 85.000 | 80 | 10 | 1 | 201 | 278 | 307 | 386 | 4.77e-37 | 140 |
| Msa0483120 | MtrunA17_Chr7g0228611 | 57.759 | 116 | 39 | 1 | 66 | 181 | 250 | 355 | 2.00e-33 | 128 |
| Msa0483120 | MtrunA17_Chr6g0458971 | 57.759 | 116 | 39 | 1 | 66 | 181 | 253 | 358 | 2.64e-33 | 128 |
| Msa0483120 | MtrunA17_Chr7g0271531 | 58.095 | 105 | 35 | 2 | 74 | 178 | 347 | 442 | 6.42e-29 | 116 |
| Msa0483120 | MtrunA17_Chr8g0356771 | 78.571 | 56 | 12 | 0 | 65 | 120 | 110 | 165 | 7.98e-24 | 95.5 |
| Msa0483120 | MtrunA17_Chr8g0356781 | 75.439 | 57 | 14 | 0 | 122 | 178 | 1 | 57 | 3.81e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0483120 | AT5G13110.1 | 85.088 | 114 | 17 | 0 | 65 | 178 | 320 | 433 | 5.60e-63 | 209 |
| Msa0483120 | AT1G24280.1 | 85.088 | 114 | 17 | 0 | 65 | 178 | 323 | 436 | 4.97e-62 | 207 |
| Msa0483120 | AT5G35790.1 | 77.193 | 114 | 26 | 0 | 65 | 178 | 301 | 414 | 3.39e-56 | 191 |
| Msa0483120 | AT3G27300.1 | 59.483 | 116 | 37 | 1 | 66 | 181 | 251 | 356 | 6.66e-35 | 133 |
| Msa0483120 | AT3G27300.3 | 59.483 | 116 | 37 | 1 | 66 | 181 | 251 | 356 | 6.66e-35 | 133 |
| Msa0483120 | AT3G27300.2 | 59.483 | 116 | 37 | 1 | 66 | 181 | 251 | 356 | 6.66e-35 | 133 |
| Msa0483120 | AT3G27300.5 | 59.483 | 116 | 37 | 1 | 66 | 181 | 305 | 410 | 1.20e-34 | 132 |
| Msa0483120 | AT3G27300.4 | 59.483 | 116 | 37 | 1 | 66 | 181 | 322 | 427 | 1.38e-34 | 132 |
| Msa0483120 | AT2G16440.1 | 78.750 | 80 | 15 | 1 | 201 | 278 | 314 | 393 | 4.55e-34 | 132 |
| Msa0483120 | AT5G40760.2 | 57.759 | 116 | 39 | 1 | 66 | 181 | 250 | 355 | 3.51e-33 | 128 |
| Msa0483120 | AT5G40760.1 | 57.759 | 116 | 39 | 1 | 66 | 181 | 250 | 355 | 3.51e-33 | 128 |
| Msa0483120 | AT1G09420.1 | 52.885 | 104 | 40 | 1 | 75 | 178 | 372 | 466 | 1.97e-26 | 109 |
| Msa0483120 | AT1G09420.2 | 47.368 | 114 | 41 | 2 | 75 | 178 | 372 | 476 | 4.99e-23 | 99.8 |
Find 89 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGATTACTTTGAATT+TGG | 0.131166 | 3_3:+90985994 | Msa0483120:CDS |
| AGCACATTCTTAAAGTATTT+CGG | 0.178405 | 3_3:-90990469 | None:intergenic |
| CTGTATTGTGAAATCTTTAA+AGG | 0.194309 | 3_3:+90990583 | Msa0483120:three_prime_UTR |
| GATTACTTTGAATTTGGATA+TGG | 0.198668 | 3_3:+90986000 | Msa0483120:CDS |
| GCACATTCTTAAAGTATTTC+GGG | 0.200987 | 3_3:-90990468 | None:intergenic |
| TTGATATTCTCAGAAGATTT+TGG | 0.217136 | 3_3:+90987727 | Msa0483120:intron |
| CAAAACACATTGTTCAAAAT+AGG | 0.218645 | 3_3:-90989234 | None:intergenic |
| TGTAGGTACTTTGACAATTA+TGG | 0.237604 | 3_3:+90987849 | Msa0483120:intron |
| CATATGAATGATTCAATCAT+AGG | 0.285850 | 3_3:+90985910 | None:intergenic |
| GGGCAGCCGCGGCAAATGTC+TGG | 0.287615 | 3_3:-90988422 | None:intergenic |
| AAAACACATTGTTCAAAATA+GGG | 0.343951 | 3_3:-90989233 | None:intergenic |
| TAAACAAATTATGAGGCTTC+AGG | 0.348456 | 3_3:+90989355 | Msa0483120:CDS |
| ATGGACTGCTGTGCTGGAAT+TGG | 0.352828 | 3_3:+90985937 | Msa0483120:CDS |
| CTTACTATTGCATGACAAAC+TGG | 0.357680 | 3_3:+90989424 | Msa0483120:CDS |
| AGCAAATAGATAAGTGGTTA+AGG | 0.372183 | 3_3:-90990661 | None:intergenic |
| ATTCTGAAGCGTGTAGAAAA+AGG | 0.373678 | 3_3:+90986828 | Msa0483120:CDS |
| TCGATGAAAGTATCCATATC+AGG | 0.376038 | 3_3:-90990044 | None:intergenic |
| ACTGGAAACTCCTGTTAGTT+TGG | 0.382061 | 3_3:+90987926 | Msa0483120:CDS |
| TCCTCTACATCCAAACTAAC+AGG | 0.382610 | 3_3:-90987936 | None:intergenic |
| AGTCTGGCTGATACCTGATA+TGG | 0.388600 | 3_3:+90990031 | Msa0483120:CDS |
| CATCGCACCTGATATGTCTT+TGG | 0.395784 | 3_3:-90990104 | None:intergenic |
| CATGACAAACTGGTGGATAC+TGG | 0.399287 | 3_3:+90989434 | Msa0483120:CDS |
| ACTACATCCTCGAGTTTAAT+CGG | 0.412521 | 3_3:-90988312 | None:intergenic |
| ATTACTTTGAATTTGGATAT+GGG | 0.418300 | 3_3:+90986001 | Msa0483120:CDS |
| AAAAGGACCAAAGACATATC+AGG | 0.426577 | 3_3:+90990097 | Msa0483120:CDS |
| CTGTTACTTGACAGGGATGT+TGG | 0.431891 | 3_3:+90986786 | Msa0483120:intron |
| ATCAGGTGACTGGTATATAC+AGG | 0.439760 | 3_3:+90989556 | Msa0483120:intron |
| GTCTGGGTTAAGCTGTCCTT+TGG | 0.440910 | 3_3:-90988405 | None:intergenic |
| TTACTGATAAACAAATTATG+AGG | 0.445606 | 3_3:+90989348 | Msa0483120:CDS |
| TTTAGTGATAAGTTGGATGA+TGG | 0.449996 | 3_3:+90989196 | Msa0483120:CDS |
| CATAAAAGCAAATAGATAAG+TGG | 0.452901 | 3_3:-90990667 | None:intergenic |
| TCATCGAATATGCAATTTCA+AGG | 0.456985 | 3_3:+90990509 | Msa0483120:three_prime_UTR |
| TGGATATGCAACACCTCCTC+TGG | 0.463674 | 3_3:-90988358 | None:intergenic |
| TCTTAAAGTATTTCGGGAAA+GGG | 0.465812 | 3_3:-90990462 | None:intergenic |
| CCTCCCTCAGGTATCTCGTC+AGG | 0.476130 | 3_3:-90989383 | None:intergenic |
| ATCGAAAATTTAAACAGCGT+TGG | 0.484696 | 3_3:+90990062 | Msa0483120:CDS |
| TTCTTAAAGTATTTCGGGAA+AGG | 0.488151 | 3_3:-90990463 | None:intergenic |
| TCACACGAAGACAATGCATT+TGG | 0.490708 | 3_3:-90986025 | None:intergenic |
| CTTCATAGATAATGCAAGAT+GGG | 0.490793 | 3_3:+90988446 | Msa0483120:CDS |
| TCCTGTTAGTTTGGATGTAG+AGG | 0.492884 | 3_3:+90987935 | Msa0483120:CDS |
| TATTTCGGGAAAGGGAACTT+TGG | 0.493171 | 3_3:-90990454 | None:intergenic |
| AATACTAGTCCTCTTTGCAC+TGG | 0.494010 | 3_3:+90987908 | Msa0483120:CDS |
| CATCGAATATGCAATTTCAA+GGG | 0.504570 | 3_3:+90990510 | Msa0483120:three_prime_UTR |
| AGAGGACATTAGAAATGAAA+AGG | 0.504615 | 3_3:+90987953 | Msa0483120:CDS |
| GAGCCAGTCGTCTAGGTCAA+GGG | 0.508608 | 3_3:+90990326 | Msa0483120:three_prime_UTR |
| GACTTAACAGTTCTCTGAGT+TGG | 0.513256 | 3_3:-90989600 | None:intergenic |
| GGGAACTTTGGTATAAGATA+AGG | 0.516378 | 3_3:-90990442 | None:intergenic |
| TAGATAATGCAAGATGGGAT+GGG | 0.518772 | 3_3:+90988451 | Msa0483120:CDS |
| CTGGTGGATACTGGAAAGCC+AGG | 0.518819 | 3_3:+90989443 | Msa0483120:CDS |
| GGCAGCCGCGGCAAATGTCT+GGG | 0.520346 | 3_3:-90988421 | None:intergenic |
| GTGTGAGGCGTTCCTCCCTC+AGG | 0.520495 | 3_3:-90989395 | None:intergenic |
| ATCTATGAAGTGGGCAGCCG+CGG | 0.523740 | 3_3:-90988433 | None:intergenic |
| TTTGTTGTACATCAGGTGAC+TGG | 0.533031 | 3_3:+90989546 | Msa0483120:intron |
| GGAGCCAGTCGTCTAGGTCA+AGG | 0.534034 | 3_3:+90990325 | Msa0483120:three_prime_UTR |
| TATTATCCTCTTTGTACTCA+CGG | 0.536920 | 3_3:+90990304 | Msa0483120:three_prime_UTR |
| CTCACCTCAACTCTGTCACC+TGG | 0.549979 | 3_3:-90989461 | None:intergenic |
| ATCTTGCATTATCTATGAAG+TGG | 0.550073 | 3_3:-90988443 | None:intergenic |
| ATAGATAATGCAAGATGGGA+TGG | 0.550173 | 3_3:+90988450 | Msa0483120:CDS |
| TTGGTACTGAAGGACGTGGC+AGG | 0.552068 | 3_3:+90987746 | Msa0483120:CDS |
| ACTCACGGAGCCAGTCGTCT+AGG | 0.565978 | 3_3:+90990319 | Msa0483120:three_prime_UTR |
| AGCCCCTTGACCTAGACGAC+TGG | 0.570287 | 3_3:-90990329 | None:intergenic |
| ATGCAACACCTCCTCTGGTG+TGG | 0.571539 | 3_3:-90988353 | None:intergenic |
| AAACACATTGTTCAAAATAG+GGG | 0.579686 | 3_3:-90989232 | None:intergenic |
| ACTTCATAGATAATGCAAGA+TGG | 0.584523 | 3_3:+90988445 | Msa0483120:CDS |
| AAAATGTGTTGCTATCATGA+AGG | 0.593996 | 3_3:+90989766 | Msa0483120:CDS |
| AGATAATGCAAGATGGGATG+GGG | 0.599941 | 3_3:+90988452 | Msa0483120:CDS |
| TCAAACAAACCTCTATAGAG+TGG | 0.603888 | 3_3:-90990140 | None:intergenic |
| TGATGACAAAACTGTACCAA+AGG | 0.605343 | 3_3:+90988389 | Msa0483120:CDS |
| AGCCAGTCGTCTAGGTCAAG+GGG | 0.618083 | 3_3:+90990327 | Msa0483120:three_prime_UTR |
| TCTTGCATTATCTATGAAGT+GGG | 0.621537 | 3_3:-90988442 | None:intergenic |
| ATCGAATATGCAATTTCAAG+GGG | 0.629980 | 3_3:+90990511 | Msa0483120:three_prime_UTR |
| TATAAGAACCACACCAGAGG+AGG | 0.636996 | 3_3:+90988345 | Msa0483120:CDS |
| AAAGCCAGGTGACAGAGTTG+AGG | 0.641668 | 3_3:+90989457 | Msa0483120:CDS |
| ACTATTGCATGACAAACTGG+TGG | 0.645480 | 3_3:+90989427 | Msa0483120:CDS |
| ATACAGGGCTATGAATGTCA+AGG | 0.646972 | 3_3:+90989572 | Msa0483120:CDS |
| TATGAGACCGATTAAACTCG+AGG | 0.649881 | 3_3:+90988305 | Msa0483120:CDS |
| AAAATAGGGGCTAATGACCA+TGG | 0.654888 | 3_3:-90989219 | None:intergenic |
| CAGGGCTATGAATGTCAAGG+TGG | 0.661008 | 3_3:+90989575 | Msa0483120:CDS |
| TCAGGTGACTGGTATATACA+GGG | 0.661864 | 3_3:+90989557 | Msa0483120:intron |
| CAGGAGTTTCCAGTGCAAAG+AGG | 0.665601 | 3_3:-90987917 | None:intergenic |
| AATAGTAAGCTAACAGTGTG+AGG | 0.667908 | 3_3:-90989410 | None:intergenic |
| AGGGCTATGAATGTCAAGGT+GGG | 0.671069 | 3_3:+90989576 | Msa0483120:CDS |
| CTTAACCCAGACATTTGCCG+CGG | 0.676329 | 3_3:+90988416 | Msa0483120:CDS |
| CAATATAAGAACCACACCAG+AGG | 0.676666 | 3_3:+90988342 | Msa0483120:CDS |
| CTGGCTCCGTGAGTACAAAG+AGG | 0.684019 | 3_3:-90990310 | None:intergenic |
| GACACCTGACGAGATACCTG+AGG | 0.684151 | 3_3:+90989379 | Msa0483120:CDS |
| ACACCTGACGAGATACCTGA+GGG | 0.690721 | 3_3:+90989380 | Msa0483120:CDS |
| GATAAGTTGGATGATGGCCA+TGG | 0.693235 | 3_3:+90989202 | Msa0483120:CDS |
| CCTGACGAGATACCTGAGGG+AGG | 0.736290 | 3_3:+90989383 | Msa0483120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACTTACATATTTGAAA+TGG | - | chr3_3:90986592-90986611 | None:intergenic | 15.0% |
| !!! | TGGTTATATACTTTTTTTAT+AGG | + | chr3_3:90987983-90988002 | Msa0483120:intron | 15.0% |
| !!! | ATTTAAAACAGATGAATTAA+AGG | - | chr3_3:90988225-90988244 | None:intergenic | 15.0% |
| !!! | TTCTTATTTTATATCAAATG+AGG | - | chr3_3:90988778-90988797 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGCTAAATTAGA+CGG | + | chr3_3:90989068-90989087 | Msa0483120:intron | 15.0% |
| !! | AATAATTATTTAAACTGTAC+TGG | + | chr3_3:90989167-90989186 | Msa0483120:intron | 15.0% |
| !! | ATAATTATTTAAACTGTACT+GGG | + | chr3_3:90989168-90989187 | Msa0483120:intron | 15.0% |
| !! | ATCAATATATTTATCATACA+GGG | - | chr3_3:90989795-90989814 | None:intergenic | 15.0% |
| !! | GAAATTGATTACTTTGAATT+TGG | + | chr3_3:90985994-90986013 | Msa0483120:CDS | 20.0% |
| !! | ATTACTTTGAATTTGGATAT+GGG | + | chr3_3:90986001-90986020 | Msa0483120:CDS | 20.0% |
| !!! | ATCTAAGATTTGATATGTTA+TGG | + | chr3_3:90986289-90986308 | Msa0483120:intron | 20.0% |
| !! | ATATTTGTTTATACGCTTAA+AGG | - | chr3_3:90986369-90986388 | None:intergenic | 20.0% |
| !! | TACCAAACTAAATATAAACA+TGG | + | chr3_3:90986610-90986629 | Msa0483120:intron | 20.0% |
| !! | ATCCATGTTTATATTTAGTT+TGG | - | chr3_3:90986615-90986634 | None:intergenic | 20.0% |
| !! | AAAATTTCCAAGATAATATC+CGG | - | chr3_3:90986638-90986657 | None:intergenic | 20.0% |
| !! | CAAAATAAAAAAAAGTGACA+GGG | - | chr3_3:90986754-90986773 | None:intergenic | 20.0% |
| !! | TCAAAATAAAAAAAAGTGAC+AGG | - | chr3_3:90986755-90986774 | None:intergenic | 20.0% |
| !!! | AATGATTTTCTTGATTACTA+AGG | + | chr3_3:90986891-90986910 | Msa0483120:intron | 20.0% |
| !! | TTATTTGGTATGATGATTAA+AGG | + | chr3_3:90987070-90987089 | Msa0483120:intron | 20.0% |
| !!! | TCTATTTTCATAAGCTATAT+TGG | + | chr3_3:90987404-90987423 | Msa0483120:intron | 20.0% |
| !!! | GTAAAGTGCTTTATTTAAAA+TGG | + | chr3_3:90987581-90987600 | Msa0483120:intron | 20.0% |
| !! | CAAAAATTAGATTTGAGAAT+CGG | - | chr3_3:90987669-90987688 | None:intergenic | 20.0% |
| !!! | CACTTTTTATGATCTTAAAA+TGG | + | chr3_3:90987795-90987814 | Msa0483120:intron | 20.0% |
| !!! | TTTCTACTTATATTTAAGGT+CGG | - | chr3_3:90988039-90988058 | None:intergenic | 20.0% |
| !! | AACCTTTCTACTTATATTTA+AGG | - | chr3_3:90988043-90988062 | None:intergenic | 20.0% |
| !!! | GATACTTTATTTAGTACAAA+AGG | - | chr3_3:90988641-90988660 | None:intergenic | 20.0% |
| !! | TTGACTTTGATGTTATATAT+TGG | - | chr3_3:90988665-90988684 | None:intergenic | 20.0% |
| !!! | AATTTGTTTACAATACACTA+TGG | + | chr3_3:90988796-90988815 | Msa0483120:intron | 20.0% |
| !!! | AGATTTTTAAGTATTTGAGA+TGG | + | chr3_3:90988950-90988969 | Msa0483120:intron | 20.0% |
| !! | AAAACACATTGTTCAAAATA+GGG | - | chr3_3:90989236-90989255 | None:intergenic | 20.0% |
| !!! | AACATATCTTTTCTAATTTC+AGG | + | chr3_3:90989324-90989343 | Msa0483120:intron | 20.0% |
| !! | TTACTGATAAACAAATTATG+AGG | + | chr3_3:90989348-90989367 | Msa0483120:CDS | 20.0% |
| !! | CATCAATATATTTATCATAC+AGG | - | chr3_3:90989796-90989815 | None:intergenic | 20.0% |
| !! | ATAAATATATTGATGAGCAT+GGG | + | chr3_3:90989801-90989820 | Msa0483120:intron | 20.0% |
| !!! | TATGTGTTGTTTAATTTTTC+AGG | + | chr3_3:90990000-90990019 | Msa0483120:intron | 20.0% |
| !!! | GAAGAAAGGTTTTAAAATTT+TGG | + | chr3_3:90990251-90990270 | Msa0483120:intron | 20.0% |
| !! | TGATTCAATCATAGGTTTTA+TGG | + | chr3_3:90985918-90985937 | Msa0483120:CDS | 25.0% |
| ! | GATTACTTTGAATTTGGATA+TGG | + | chr3_3:90986000-90986019 | Msa0483120:CDS | 25.0% |
| ! | ATTGAGTGAATTATATGTTC+AGG | + | chr3_3:90986170-90986189 | Msa0483120:intron | 25.0% |
| !! | AACCTTTTTATTCACTATGT+TGG | - | chr3_3:90986258-90986277 | None:intergenic | 25.0% |
| ! | ACTAAATATAAACATGGATC+CGG | + | chr3_3:90986616-90986635 | Msa0483120:intron | 25.0% |
| !! | TCAAGAAAATCATTCTTTTG+AGG | - | chr3_3:90986885-90986904 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTGTTTGATTG+TGG | + | chr3_3:90986955-90986974 | Msa0483120:intron | 25.0% |
| ! | ATGATTAAAGGAAACTGATA+AGG | + | chr3_3:90987082-90987101 | Msa0483120:intron | 25.0% |
| ! | ACTTATATGATAAGTGTGAA+TGG | - | chr3_3:90987316-90987335 | None:intergenic | 25.0% |
| !! | TTGATATTCTCAGAAGATTT+TGG | + | chr3_3:90987727-90987746 | Msa0483120:intron | 25.0% |
| ! | GACCTTAAATATAAGTAGAA+AGG | + | chr3_3:90988038-90988057 | Msa0483120:intron | 25.0% |
| !! | ACAAATACATGTACCTTTTT+CGG | + | chr3_3:90988075-90988094 | Msa0483120:intron | 25.0% |
| ! | ACTTTCTTCTCAAAATCATT+TGG | + | chr3_3:90988151-90988170 | Msa0483120:intron | 25.0% |
| ! | CTTTCTTCTCAAAATCATTT+GGG | + | chr3_3:90988152-90988171 | Msa0483120:intron | 25.0% |
| ! | ATAACATCAAAGTCAATAGT+AGG | + | chr3_3:90988669-90988688 | Msa0483120:intron | 25.0% |
| !! | TCTCAATGACTACAAAATTT+TGG | + | chr3_3:90988738-90988757 | Msa0483120:intron | 25.0% |
| !!! | CTTGTTATTATGCATCATAT+AGG | - | chr3_3:90988920-90988939 | None:intergenic | 25.0% |
| ! | TAAAAGAGATGGGAAAATAT+TGG | - | chr3_3:90988983-90989002 | None:intergenic | 25.0% |
| ! | AAACACATTGTTCAAAATAG+GGG | - | chr3_3:90989235-90989254 | None:intergenic | 25.0% |
| ! | CAAAACACATTGTTCAAAAT+AGG | - | chr3_3:90989237-90989256 | None:intergenic | 25.0% |
| !!! | CTATTTTGAACAATGTGTTT+TGG | + | chr3_3:90989235-90989254 | Msa0483120:CDS | 25.0% |
| ! | ATATTCTCATGTTTGTTCAA+TGG | + | chr3_3:90989511-90989530 | Msa0483120:intron | 25.0% |
| ! | GATTCATTTCATTGTTCTAA+AGG | + | chr3_3:90989742-90989761 | Msa0483120:intron | 25.0% |
| ! | GATAAATATATTGATGAGCA+TGG | + | chr3_3:90989800-90989819 | Msa0483120:intron | 25.0% |
| ! | TAAATATATTGATGAGCATG+GGG | + | chr3_3:90989802-90989821 | Msa0483120:intron | 25.0% |
| ! | TGTTTAAGAATCCGAAAAAA+GGG | + | chr3_3:90990415-90990434 | Msa0483120:three_prime_UTR | 25.0% |
| !! | AGCACATTCTTAAAGTATTT+CGG | - | chr3_3:90990472-90990491 | None:intergenic | 25.0% |
| ! | CTGTATTGTGAAATCTTTAA+AGG | + | chr3_3:90990583-90990602 | Msa0483120:three_prime_UTR | 25.0% |
| ! | GAAAAAAATCTGATTGGTAA+AGG | - | chr3_3:90990617-90990636 | None:intergenic | 25.0% |
| ! | GTGAATGAAAAAAATCTGAT+TGG | - | chr3_3:90990623-90990642 | None:intergenic | 25.0% |
| ! | CATAAAAGCAAATAGATAAG+TGG | - | chr3_3:90990670-90990689 | None:intergenic | 25.0% |
| !!! | TCTATTTGCTTTTATGCAAA+TGG | + | chr3_3:90990674-90990693 | Msa0483120:three_prime_UTR | 25.0% |
| !! | TTTATTGCAGCAGTTGATAA+AGG | + | chr3_3:90986216-90986235 | Msa0483120:intron | 30.0% |
| TGCCAACATAGTGAATAAAA+AGG | + | chr3_3:90986253-90986272 | Msa0483120:intron | 30.0% | |
| TCTCGCATAAACATATATGT+TGG | + | chr3_3:90986463-90986482 | Msa0483120:intron | 30.0% | |
| ! | TCTTTGAAAGAGTTGCTTTA+TGG | + | chr3_3:90986531-90986550 | Msa0483120:intron | 30.0% |
| !! | AATGTTTTCTGTTACTTGAC+AGG | + | chr3_3:90986778-90986797 | Msa0483120:intron | 30.0% |
| !! | ATGTTTTCTGTTACTTGACA+GGG | + | chr3_3:90986779-90986798 | Msa0483120:intron | 30.0% |
| !!! | TTGTTGTTTGATTGTGGTTT+TGG | + | chr3_3:90986961-90986980 | Msa0483120:intron | 30.0% |
| TTAAAGGAAACTGATAAGGT+TGG | + | chr3_3:90987086-90987105 | Msa0483120:intron | 30.0% | |
| AGCAATATGGTGAAAGAAAA+TGG | + | chr3_3:90987112-90987131 | Msa0483120:intron | 30.0% | |
| GCAATATGGTGAAAGAAAAT+GGG | + | chr3_3:90987113-90987132 | Msa0483120:intron | 30.0% | |
| CTTTAACAAGATCATTCAAG+CGG | + | chr3_3:90987216-90987235 | Msa0483120:intron | 30.0% | |
| !! | AACAATCCTAGAAGTGTTTA+TGG | + | chr3_3:90987495-90987514 | Msa0483120:intron | 30.0% |
| TAATTAGACCATGTTTGGAT+TGG | - | chr3_3:90987542-90987561 | None:intergenic | 30.0% | |
| ACAGATAATTAGACCATGTT+TGG | - | chr3_3:90987547-90987566 | None:intergenic | 30.0% | |
| TATAGAATCGATCACTATCT+TGG | + | chr3_3:90987613-90987632 | Msa0483120:intron | 30.0% | |
| ! | ATCTAATTTTTGACCCTTTG+TGG | + | chr3_3:90987677-90987696 | Msa0483120:intron | 30.0% |
| ! | AAAAAGTGTAAATGCTGCAA+AGG | - | chr3_3:90987783-90987802 | None:intergenic | 30.0% |
| TGTAGGTACTTTGACAATTA+TGG | + | chr3_3:90987849-90987868 | Msa0483120:intron | 30.0% | |
| AGAGGACATTAGAAATGAAA+AGG | + | chr3_3:90987953-90987972 | Msa0483120:CDS | 30.0% | |
| AGAAATGAAAAGGTCTCATA+TGG | + | chr3_3:90987963-90987982 | Msa0483120:intron | 30.0% | |
| ! | TACTTATATTTAAGGTCGGA+GGG | - | chr3_3:90988035-90988054 | None:intergenic | 30.0% |
| !!! | ACCTTTTTCGGTCAAATATA+AGG | + | chr3_3:90988087-90988106 | Msa0483120:intron | 30.0% |
| CATGACTTTCAATTGCTTAA+TGG | + | chr3_3:90988258-90988277 | Msa0483120:intron | 30.0% | |
| !! | TACAGTTTTGTCATCAATGT+AGG | - | chr3_3:90988385-90988404 | None:intergenic | 30.0% |
| TCTTGCATTATCTATGAAGT+GGG | - | chr3_3:90988445-90988464 | None:intergenic | 30.0% | |
| ATCTTGCATTATCTATGAAG+TGG | - | chr3_3:90988446-90988465 | None:intergenic | 30.0% | |
| ACTTCATAGATAATGCAAGA+TGG | + | chr3_3:90988445-90988464 | Msa0483120:CDS | 30.0% | |
| CTTCATAGATAATGCAAGAT+GGG | + | chr3_3:90988446-90988465 | Msa0483120:CDS | 30.0% | |
| TGTATTCTGTATTGTGACAT+TGG | - | chr3_3:90988717-90988736 | None:intergenic | 30.0% | |
| TAACCAAGAAACACTTATTC+TGG | - | chr3_3:90989043-90989062 | None:intergenic | 30.0% | |
| !! | GGTAGATTTTAGTGATAAGT+TGG | + | chr3_3:90989189-90989208 | Msa0483120:intron | 30.0% |
| ! | TTTAGTGATAAGTTGGATGA+TGG | + | chr3_3:90989196-90989215 | Msa0483120:CDS | 30.0% |
| !!! | TGGATTTTAGTTCATAAACC+TGG | + | chr3_3:90989290-90989309 | Msa0483120:intron | 30.0% |
| ATATGTTAATTGCAGTTTCC+AGG | - | chr3_3:90989311-90989330 | None:intergenic | 30.0% | |
| TAAACAAATTATGAGGCTTC+AGG | + | chr3_3:90989355-90989374 | Msa0483120:CDS | 30.0% | |
| ! | ATCTATTTATCAGAGTGTCA+TGG | - | chr3_3:90989493-90989512 | None:intergenic | 30.0% |
| ATGTACAACAAAACACTCAT+GGG | - | chr3_3:90989538-90989557 | None:intergenic | 30.0% | |
| AGACAAGATGAAAAATGCAA+AGG | - | chr3_3:90989678-90989697 | None:intergenic | 30.0% | |
| ! | TGAATCATGCCAACTTTTAA+GGG | - | chr3_3:90989728-90989747 | None:intergenic | 30.0% |
| ! | ATGAATCATGCCAACTTTTA+AGG | - | chr3_3:90989729-90989748 | None:intergenic | 30.0% |
| ! | AAAATGTGTTGCTATCATGA+AGG | + | chr3_3:90989766-90989785 | Msa0483120:CDS | 30.0% |
| AACAATTGACAACAAATGCA+GGG | - | chr3_3:90989960-90989979 | None:intergenic | 30.0% | |
| AAACAATTGACAACAAATGC+AGG | - | chr3_3:90989961-90989980 | None:intergenic | 30.0% | |
| !! | TTTTCAGGAAATATACAGTC+TGG | + | chr3_3:90990015-90990034 | Msa0483120:intron | 30.0% |
| ATCGAAAATTTAAACAGCGT+TGG | + | chr3_3:90990062-90990081 | Msa0483120:CDS | 30.0% | |
| GTTGGTTATCTACTCAAAAA+AGG | + | chr3_3:90990080-90990099 | Msa0483120:CDS | 30.0% | |
| AGAGTTGCACATTAATAAGA+TGG | - | chr3_3:90990172-90990191 | None:intergenic | 30.0% | |
| TATTATCCTCTTTGTACTCA+CGG | + | chr3_3:90990304-90990323 | Msa0483120:three_prime_UTR | 30.0% | |
| GTGTTTAAGAATCCGAAAAA+AGG | + | chr3_3:90990414-90990433 | Msa0483120:three_prime_UTR | 30.0% | |
| ! | TCTTAAAGTATTTCGGGAAA+GGG | - | chr3_3:90990465-90990484 | None:intergenic | 30.0% |
| ! | TTCTTAAAGTATTTCGGGAA+AGG | - | chr3_3:90990466-90990485 | None:intergenic | 30.0% |
| ! | GCACATTCTTAAAGTATTTC+GGG | - | chr3_3:90990471-90990490 | None:intergenic | 30.0% |
| TCATCGAATATGCAATTTCA+AGG | + | chr3_3:90990509-90990528 | Msa0483120:three_prime_UTR | 30.0% | |
| CATCGAATATGCAATTTCAA+GGG | + | chr3_3:90990510-90990529 | Msa0483120:three_prime_UTR | 30.0% | |
| ATCGAATATGCAATTTCAAG+GGG | + | chr3_3:90990511-90990530 | Msa0483120:three_prime_UTR | 30.0% | |
| AGCAAATAGATAAGTGGTTA+AGG | - | chr3_3:90990664-90990683 | None:intergenic | 30.0% | |
| ATAAAAGAAGCTTGCAGTTC+TGG | - | chr3_3:90986201-90986220 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTAAACTGTCAAC+GGG | - | chr3_3:90986431-90986450 | None:intergenic | 35.0% |
| ! | GTTGAGTTGTAAACTGTCAA+CGG | - | chr3_3:90986432-90986451 | None:intergenic | 35.0% |
| TTGACAGTTTACAACTCAAC+AGG | + | chr3_3:90986432-90986451 | Msa0483120:intron | 35.0% | |
| TGACAGTTTACAACTCAACA+GGG | + | chr3_3:90986433-90986452 | Msa0483120:intron | 35.0% | |
| !! | ATTCTGAAGCGTGTAGAAAA+AGG | + | chr3_3:90986828-90986847 | Msa0483120:CDS | 35.0% |
| ACTAAGGTAGCAGTTTATGT+TGG | + | chr3_3:90986907-90986926 | Msa0483120:intron | 35.0% | |
| !! | TAGCAGTTTATGTTGGTTTG+AGG | + | chr3_3:90986914-90986933 | Msa0483120:intron | 35.0% |
| TGAGGTTATGAGATGGTTAT+TGG | + | chr3_3:90986932-90986951 | Msa0483120:intron | 35.0% | |
| !! | ATAAGGTTGGTGAAGCAATA+TGG | + | chr3_3:90987099-90987118 | Msa0483120:intron | 35.0% |
| CAAATAGCTGAGAAGTTAGA+AGG | + | chr3_3:90987138-90987157 | Msa0483120:intron | 35.0% | |
| ! | TGACTGAGGATCAAATTTTC+AGG | + | chr3_3:90987243-90987262 | Msa0483120:intron | 35.0% |
| AACTACACTTTGACTGTGTT+TGG | + | chr3_3:90987272-90987291 | Msa0483120:intron | 35.0% | |
| !! | ACACTTCTAGGATTGTTTGA+AGG | - | chr3_3:90987492-90987511 | None:intergenic | 35.0% |
| CAAACAATCCAATCCAAACA+TGG | + | chr3_3:90987531-90987550 | Msa0483120:intron | 35.0% | |
| !! | TCAGAAGATTTTGGTACTGA+AGG | + | chr3_3:90987736-90987755 | Msa0483120:intron | 35.0% |
| TTCATATCTGTTCCATGTGT+AGG | + | chr3_3:90987832-90987851 | Msa0483120:intron | 35.0% | |
| ! | ATTGTCAAAGTACCTACACA+TGG | - | chr3_3:90987847-90987866 | None:intergenic | 35.0% |
| ! | CTACTTATATTTAAGGTCGG+AGG | - | chr3_3:90988036-90988055 | None:intergenic | 35.0% |
| GCCTTATATTTGACCGAAAA+AGG | - | chr3_3:90988091-90988110 | None:intergenic | 35.0% | |
| ! | TTTTCGGTCAAATATAAGGC+CGG | + | chr3_3:90988091-90988110 | Msa0483120:intron | 35.0% |
| !!! | AAAGTCCAGGTTTTAAACTC+TGG | - | chr3_3:90988136-90988155 | None:intergenic | 35.0% |
| !! | TGATTTTGAGAAGAAAGTCC+AGG | - | chr3_3:90988149-90988168 | None:intergenic | 35.0% |
| TCTTCTCAAAATCATTTGGG+TGG | + | chr3_3:90988155-90988174 | Msa0483120:intron | 35.0% | |
| ! | TCAATTGCTTAATGGATGTC+AGG | + | chr3_3:90988266-90988285 | Msa0483120:intron | 35.0% |
| ACTACATCCTCGAGTTTAAT+CGG | - | chr3_3:90988315-90988334 | None:intergenic | 35.0% | |
| ! | AAACTCGAGGATGTAGTTTT+AGG | + | chr3_3:90988318-90988337 | Msa0483120:CDS | 35.0% |
| TGATGACAAAACTGTACCAA+AGG | + | chr3_3:90988389-90988408 | Msa0483120:CDS | 35.0% | |
| ATAGATAATGCAAGATGGGA+TGG | + | chr3_3:90988450-90988469 | Msa0483120:CDS | 35.0% | |
| TAGATAATGCAAGATGGGAT+GGG | + | chr3_3:90988451-90988470 | Msa0483120:CDS | 35.0% | |
| !!! | TACCTTTTTTGATGAAGGCT+GGG | + | chr3_3:90988475-90988494 | Msa0483120:intron | 35.0% |
| TATTCCTTTCACTTACCTCT+TGG | - | chr3_3:90988514-90988533 | None:intergenic | 35.0% | |
| TAGCAGATCGTGAAAATTTG+CGG | + | chr3_3:90988555-90988574 | Msa0483120:intron | 35.0% | |
| !! | TTGTGACATTGGTTTGATGT+TGG | - | chr3_3:90988706-90988725 | None:intergenic | 35.0% |
| GATCTCAGCTTAAAAGAGAT+GGG | - | chr3_3:90988993-90989012 | None:intergenic | 35.0% | |
| TGATCTCAGCTTAAAAGAGA+TGG | - | chr3_3:90988994-90989013 | None:intergenic | 35.0% | |
| ! | TCTCTTTTAAGCTGAGATCA+AGG | + | chr3_3:90988994-90989013 | Msa0483120:intron | 35.0% |
| ! | CTCTTTTAAGCTGAGATCAA+GGG | + | chr3_3:90988995-90989014 | Msa0483120:intron | 35.0% |
| ATGCCAGAATAAGTGTTTCT+TGG | + | chr3_3:90989037-90989056 | Msa0483120:intron | 35.0% | |
| !! | GTTTTGGTCATGTGACTATT+TGG | + | chr3_3:90989251-90989270 | Msa0483120:intron | 35.0% |
| !! | TCATGTGACTATTTGGTGTA+AGG | + | chr3_3:90989258-90989277 | Msa0483120:intron | 35.0% |
| ! | TTGGTGTAAGGTTTTTCACT+TGG | + | chr3_3:90989270-90989289 | Msa0483120:intron | 35.0% |
| AATAGTAAGCTAACAGTGTG+AGG | - | chr3_3:90989413-90989432 | None:intergenic | 35.0% | |
| CTTACTATTGCATGACAAAC+TGG | + | chr3_3:90989424-90989443 | Msa0483120:CDS | 35.0% | |
| GATGTACAACAAAACACTCA+TGG | - | chr3_3:90989539-90989558 | None:intergenic | 35.0% | |
| !! | TGAGTGTTTTGTTGTACATC+AGG | + | chr3_3:90989539-90989558 | Msa0483120:intron | 35.0% |
| !!! | GACATTTGTTTTGTTCCGTT+TGG | + | chr3_3:90989702-90989721 | Msa0483120:intron | 35.0% |
| !!! | TTGTTGATTTTGGTTGAAGC+AGG | + | chr3_3:90989825-90989844 | Msa0483120:intron | 35.0% |
| !!! | TGTTGATTTTGGTTGAAGCA+GGG | + | chr3_3:90989826-90989845 | Msa0483120:intron | 35.0% |
| TCTTAATAAGCAATCAGAGC+TGG | + | chr3_3:90989889-90989908 | Msa0483120:intron | 35.0% | |
| !! | TCGATGAAAGTATCCATATC+AGG | - | chr3_3:90990047-90990066 | None:intergenic | 35.0% |
| AAAAGGACCAAAGACATATC+AGG | + | chr3_3:90990097-90990116 | Msa0483120:CDS | 35.0% | |
| TCAAACAAACCTCTATAGAG+TGG | - | chr3_3:90990143-90990162 | None:intergenic | 35.0% | |
| ! | GGTAAGGCATTATAGATTCT+TGG | - | chr3_3:90990203-90990222 | None:intergenic | 35.0% |
| TAATACCTGCATGTGTCAAA+AGG | - | chr3_3:90990289-90990308 | None:intergenic | 35.0% | |
| !!! | GATAAGGTACACCCTTTTTT+CGG | - | chr3_3:90990429-90990448 | None:intergenic | 35.0% |
| GGGAACTTTGGTATAAGATA+AGG | - | chr3_3:90990445-90990464 | None:intergenic | 35.0% | |
| !! | CTTTTATGCAAATGGTGTTG+AGG | + | chr3_3:90990682-90990701 | Msa0483120:three_prime_UTR | 35.0% |
| TCACACGAAGACAATGCATT+TGG | - | chr3_3:90986028-90986047 | None:intergenic | 40.0% | |
| CATTGTCTTCGTGTGAGTAT+TGG | + | chr3_3:90986032-90986051 | Msa0483120:intron | 40.0% | |
| !!! | CGGGGTGGATTACTTTTTTT+CGG | - | chr3_3:90986412-90986431 | None:intergenic | 40.0% |
| TGAGTTGTAAACTGTCAACG+GGG | - | chr3_3:90986430-90986449 | None:intergenic | 40.0% | |
| CATGGATCCGGATATTATCT+TGG | + | chr3_3:90986628-90986647 | Msa0483120:intron | 40.0% | |
| TTGAAGAATGAGCAGCATGA+AGG | - | chr3_3:90986712-90986731 | None:intergenic | 40.0% | |
| GTGACAGGGAACATATCATT+AGG | - | chr3_3:90986740-90986759 | None:intergenic | 40.0% | |
| TGAAGCGTGTAGAAAAAGGT+TGG | + | chr3_3:90986832-90986851 | Msa0483120:CDS | 40.0% | |
| GAAGCGTGTAGAAAAAGGTT+GGG | + | chr3_3:90986833-90986852 | Msa0483120:CDS | 40.0% | |
| AAGCGTGTAGAAAAAGGTTG+GGG | + | chr3_3:90986834-90986853 | Msa0483120:CDS | 40.0% | |
| !! | GTTGGTTTGAGGTTATGAGA+TGG | + | chr3_3:90986925-90986944 | Msa0483120:intron | 40.0% |
| TAGCTGAGAAGTTAGAAGGA+AGG | + | chr3_3:90987142-90987161 | Msa0483120:intron | 40.0% | |
| AGCTGAGAAGTTAGAAGGAA+GGG | + | chr3_3:90987143-90987162 | Msa0483120:intron | 40.0% | |
| TGATCTTGTTAAAGCAGCTG+AGG | - | chr3_3:90987210-90987229 | None:intergenic | 40.0% | |
| CTATCTTGGAAAAGAGCTTG+TGG | + | chr3_3:90987627-90987646 | Msa0483120:intron | 40.0% | |
| AATACTAGTCCTCTTTGCAC+TGG | + | chr3_3:90987908-90987927 | Msa0483120:CDS | 40.0% | |
| ACTGGAAACTCCTGTTAGTT+TGG | + | chr3_3:90987926-90987945 | Msa0483120:CDS | 40.0% | |
| ! | TCCTGTTAGTTTGGATGTAG+AGG | + | chr3_3:90987935-90987954 | Msa0483120:CDS | 40.0% |
| TCCTCTACATCCAAACTAAC+AGG | - | chr3_3:90987939-90987958 | None:intergenic | 40.0% | |
| CTTCTAGCATATACATCCTC+CGG | - | chr3_3:90988113-90988132 | None:intergenic | 40.0% | |
| ! | AGAAGCCAGAGTTTAAAACC+TGG | + | chr3_3:90988128-90988147 | Msa0483120:intron | 40.0% |
| TATGAGACCGATTAAACTCG+AGG | + | chr3_3:90988305-90988324 | Msa0483120:CDS | 40.0% | |
| CAATATAAGAACCACACCAG+AGG | + | chr3_3:90988342-90988361 | Msa0483120:CDS | 40.0% | |
| ! | GTTTTGTCATCAATGTAGGC+TGG | - | chr3_3:90988381-90988400 | None:intergenic | 40.0% |
| AGATAATGCAAGATGGGATG+GGG | + | chr3_3:90988452-90988471 | Msa0483120:CDS | 40.0% | |
| !!! | TGGGGTACCTTTTTTGATGA+AGG | + | chr3_3:90988470-90988489 | Msa0483120:intron | 40.0% |
| !!! | GTACCTTTTTTGATGAAGGC+TGG | + | chr3_3:90988474-90988493 | Msa0483120:intron | 40.0% |
| TTCCCAGCCTTCATCAAAAA+AGG | - | chr3_3:90988480-90988499 | None:intergenic | 40.0% | |
| AAAATAGGGGCTAATGACCA+TGG | - | chr3_3:90989222-90989241 | None:intergenic | 40.0% | |
| ACTATTGCATGACAAACTGG+TGG | + | chr3_3:90989427-90989446 | Msa0483120:CDS | 40.0% | |
| ! | TTTGTTGTACATCAGGTGAC+TGG | + | chr3_3:90989546-90989565 | Msa0483120:intron | 40.0% |
| ATCAGGTGACTGGTATATAC+AGG | + | chr3_3:90989556-90989575 | Msa0483120:intron | 40.0% | |
| TCAGGTGACTGGTATATACA+GGG | + | chr3_3:90989557-90989576 | Msa0483120:intron | 40.0% | |
| ATACAGGGCTATGAATGTCA+AGG | + | chr3_3:90989572-90989591 | Msa0483120:CDS | 40.0% | |
| GACTTAACAGTTCTCTGAGT+TGG | - | chr3_3:90989603-90989622 | None:intergenic | 40.0% | |
| !!! | GTTGATTTTGGTTGAAGCAG+GGG | + | chr3_3:90989827-90989846 | Msa0483120:intron | 40.0% |
| !!! | TTGATTTTGGTTGAAGCAGG+GGG | + | chr3_3:90989828-90989847 | Msa0483120:intron | 40.0% |
| ! | TTTTACGCTCCACTCTATAG+AGG | + | chr3_3:90990131-90990150 | Msa0483120:three_prime_UTR | 40.0% |
| AACCTTTCTTCCCCTTATAG+AGG | - | chr3_3:90990242-90990261 | None:intergenic | 40.0% | |
| ! | ACAATCCTTTTGACACATGC+AGG | + | chr3_3:90990281-90990300 | Msa0483120:intron | 40.0% |
| TATTTCGGGAAAGGGAACTT+TGG | - | chr3_3:90990457-90990476 | None:intergenic | 40.0% | |
| ! | AAAGAAGCTTGCAGTTCTGG+AGG | - | chr3_3:90986198-90986217 | None:intergenic | 45.0% |
| TGCAATGAGTTCTGCGTCTA+TGG | + | chr3_3:90986661-90986680 | Msa0483120:intron | 45.0% | |
| GAATGAGCAGCATGAAGGAA+TGG | - | chr3_3:90986707-90986726 | None:intergenic | 45.0% | |
| ! | CTGTTACTTGACAGGGATGT+TGG | + | chr3_3:90986786-90986805 | Msa0483120:intron | 45.0% |
| GTAGAAAAAGGTTGGGGTCA+AGG | + | chr3_3:90986840-90986859 | Msa0483120:CDS | 45.0% | |
| GAGAAGTTAGAAGGAAGGGT+TGG | + | chr3_3:90987147-90987166 | Msa0483120:intron | 45.0% | |
| ATTCAAGCGGTATCTGACTG+AGG | + | chr3_3:90987229-90987248 | Msa0483120:intron | 45.0% | |
| GGATTGTTTGAAGGAGCTCA+AGG | - | chr3_3:90987483-90987502 | None:intergenic | 45.0% | |
| CCACTGCCATAAACACTTCT+AGG | - | chr3_3:90987504-90987523 | None:intergenic | 45.0% | |
| !! | CCTAGAAGTGTTTATGGCAG+TGG | + | chr3_3:90987501-90987520 | Msa0483120:intron | 45.0% |
| ! | TTTTTGACCCTTTGTGGTCG+AGG | + | chr3_3:90987683-90987702 | Msa0483120:intron | 45.0% |
| TGTATTGCCTCGACCACAAA+GGG | - | chr3_3:90987693-90987712 | None:intergenic | 45.0% | |
| ATGTATTGCCTCGACCACAA+AGG | - | chr3_3:90987694-90987713 | None:intergenic | 45.0% | |
| !! | GATTTTGGTACTGAAGGACG+TGG | + | chr3_3:90987742-90987761 | Msa0483120:CDS | 45.0% |
| ! | GCTTAATGGATGTCAGGTCA+AGG | + | chr3_3:90988272-90988291 | Msa0483120:intron | 45.0% |
| TATAAGAACCACACCAGAGG+AGG | + | chr3_3:90988345-90988364 | Msa0483120:CDS | 45.0% | |
| !! | GGAAAGCATTACACACCAAG+AGG | + | chr3_3:90988496-90988515 | Msa0483120:intron | 45.0% |
| CACACCAAGAGGTAAGTGAA+AGG | + | chr3_3:90988507-90988526 | Msa0483120:intron | 45.0% | |
| ! | GATAAGTTGGATGATGGCCA+TGG | + | chr3_3:90989202-90989221 | Msa0483120:CDS | 45.0% |
| ! | CATGACAAACTGGTGGATAC+TGG | + | chr3_3:90989434-90989453 | Msa0483120:CDS | 45.0% |
| AGGGCTATGAATGTCAAGGT+GGG | + | chr3_3:90989576-90989595 | Msa0483120:CDS | 45.0% | |
| TCCGTTTGGCCCTTAAAAGT+TGG | + | chr3_3:90989716-90989735 | Msa0483120:intron | 45.0% | |
| !! | GCCAACTTTTAAGGGCCAAA+CGG | - | chr3_3:90989720-90989739 | None:intergenic | 45.0% |
| !!! | GAGCATGGGGTTGTTGATTT+TGG | + | chr3_3:90989815-90989834 | Msa0483120:intron | 45.0% |
| AGTCTGGCTGATACCTGATA+TGG | + | chr3_3:90990031-90990050 | Msa0483120:CDS | 45.0% | |
| CATCGCACCTGATATGTCTT+TGG | - | chr3_3:90990107-90990126 | None:intergenic | 45.0% | |
| CTTATAGAGGTGGCTAGGAA+GGG | - | chr3_3:90990229-90990248 | None:intergenic | 45.0% | |
| CTTCCTAGCCACCTCTATAA+GGG | + | chr3_3:90990228-90990247 | Msa0483120:intron | 45.0% | |
| TTCCTAGCCACCTCTATAAG+GGG | + | chr3_3:90990229-90990248 | Msa0483120:intron | 45.0% | |
| CTTTCTTCCCCTTATAGAGG+TGG | - | chr3_3:90990239-90990258 | None:intergenic | 45.0% | |
| CACCTCTATAAGGGGAAGAA+AGG | + | chr3_3:90990237-90990256 | Msa0483120:intron | 45.0% | |
| !!! | TTTTATTAATATGTTTTATT+TGG | + | chr3_3:90987055-90987074 | Msa0483120:intron | 5.0% |
| !! | GGTTTTATGGACTGCTGTGC+TGG | + | chr3_3:90985931-90985950 | Msa0483120:CDS | 50.0% |
| ! | ATGGACTGCTGTGCTGGAAT+TGG | + | chr3_3:90985937-90985956 | Msa0483120:CDS | 50.0% |
| GTTGTAAACTGTCAACGGGG+TGG | - | chr3_3:90986427-90986446 | None:intergenic | 50.0% | |
| CAGGAGTTTCCAGTGCAAAG+AGG | - | chr3_3:90987920-90987939 | None:intergenic | 50.0% | |
| TCGGTCAAATATAAGGCCGG+AGG | + | chr3_3:90988094-90988113 | Msa0483120:intron | 50.0% | |
| TACGCCTCAGCTCATGGTTA+TGG | + | chr3_3:90988198-90988217 | Msa0483120:intron | 50.0% | |
| AGGTCCATAACCATGAGCTG+AGG | - | chr3_3:90988205-90988224 | None:intergenic | 50.0% | |
| TGGATATGCAACACCTCCTC+TGG | - | chr3_3:90988361-90988380 | None:intergenic | 50.0% | |
| GTCTGGGTTAAGCTGTCCTT+TGG | - | chr3_3:90988408-90988427 | None:intergenic | 50.0% | |
| CTTAACCCAGACATTTGCCG+CGG | + | chr3_3:90988416-90988435 | Msa0483120:CDS | 50.0% | |
| ACACCTGACGAGATACCTGA+GGG | + | chr3_3:90989380-90989399 | Msa0483120:CDS | 50.0% | |
| AAAGCCAGGTGACAGAGTTG+AGG | + | chr3_3:90989457-90989476 | Msa0483120:CDS | 50.0% | |
| CAGGGCTATGAATGTCAAGG+TGG | + | chr3_3:90989575-90989594 | Msa0483120:CDS | 50.0% | |
| GGGGATCAGTCAACAGAAAG+AGG | + | chr3_3:90989847-90989866 | Msa0483120:intron | 50.0% | |
| TGGCTAGGAAGGGATAGGTA+AGG | - | chr3_3:90990219-90990238 | None:intergenic | 50.0% | |
| CCTTATAGAGGTGGCTAGGA+AGG | - | chr3_3:90990230-90990249 | None:intergenic | 50.0% | |
| CCTTCCTAGCCACCTCTATA+AGG | + | chr3_3:90990227-90990246 | Msa0483120:intron | 50.0% | |
| TTCCCCTTATAGAGGTGGCT+AGG | - | chr3_3:90990234-90990253 | None:intergenic | 50.0% | |
| GCAAGCAGTGTAGAGAGCGA+TGG | + | chr3_3:90987169-90987188 | Msa0483120:intron | 55.0% | |
| ! | TTGGTACTGAAGGACGTGGC+AGG | + | chr3_3:90987746-90987765 | Msa0483120:CDS | 55.0% |
| TTGAGCTACGCCTCAGCTCA+TGG | + | chr3_3:90988192-90988211 | Msa0483120:intron | 55.0% | |
| ATGCAACACCTCCTCTGGTG+TGG | - | chr3_3:90988356-90988375 | None:intergenic | 55.0% | |
| ATCTATGAAGTGGGCAGCCG+CGG | - | chr3_3:90988436-90988455 | None:intergenic | 55.0% | |
| GACACCTGACGAGATACCTG+AGG | + | chr3_3:90989379-90989398 | Msa0483120:CDS | 55.0% | |
| ! | CTGGTGGATACTGGAAAGCC+AGG | + | chr3_3:90989443-90989462 | Msa0483120:CDS | 55.0% |
| CTCACCTCAACTCTGTCACC+TGG | - | chr3_3:90989464-90989483 | None:intergenic | 55.0% | |
| AGAGGTGGCTAGGAAGGGAT+AGG | - | chr3_3:90990224-90990243 | None:intergenic | 55.0% | |
| CTGGCTCCGTGAGTACAAAG+AGG | - | chr3_3:90990313-90990332 | None:intergenic | 55.0% | |
| GAGCCAGTCGTCTAGGTCAA+GGG | + | chr3_3:90990326-90990345 | Msa0483120:three_prime_UTR | 55.0% | |
| AGCCAGTCGTCTAGGTCAAG+GGG | + | chr3_3:90990327-90990346 | Msa0483120:three_prime_UTR | 55.0% | |
| GAGCTGAGGCGTAGCTCAAG+TGG | - | chr3_3:90988191-90988210 | None:intergenic | 60.0% | |
| CCTCCCTCAGGTATCTCGTC+AGG | - | chr3_3:90989386-90989405 | None:intergenic | 60.0% | |
| CCTGACGAGATACCTGAGGG+AGG | + | chr3_3:90989383-90989402 | Msa0483120:CDS | 60.0% | |
| ACTCACGGAGCCAGTCGTCT+AGG | + | chr3_3:90990319-90990338 | Msa0483120:three_prime_UTR | 60.0% | |
| GGAGCCAGTCGTCTAGGTCA+AGG | + | chr3_3:90990325-90990344 | Msa0483120:three_prime_UTR | 60.0% | |
| AGCCCCTTGACCTAGACGAC+TGG | - | chr3_3:90990332-90990351 | None:intergenic | 60.0% | |
| GGCAGCCGCGGCAAATGTCT+GGG | - | chr3_3:90988424-90988443 | None:intergenic | 65.0% | |
| ! | GTGTGAGGCGTTCCTCCCTC+AGG | - | chr3_3:90989398-90989417 | None:intergenic | 65.0% |
| GGGCAGCCGCGGCAAATGTC+TGG | - | chr3_3:90988425-90988444 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 90985913 | 90990710 | 90985913 | ID=Msa0483120;Name=Msa0483120 |
| chr3_3 | mRNA | 90985913 | 90990710 | 90985913 | ID=Msa0483120-mRNA-1;Parent=Msa0483120;Name=Msa0483120-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.3|0.36|0.72|0.5|0.63|11|433|313 |
| chr3_3 | exon | 90985913 | 90986043 | 90985913 | ID=Msa0483120-mRNA-1:exon:26586;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90986800 | 90986864 | 90986800 | ID=Msa0483120-mRNA-1:exon:26587;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90987740 | 90987767 | 90987740 | ID=Msa0483120-mRNA-1:exon:26588;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90987854 | 90987974 | 90987854 | ID=Msa0483120-mRNA-1:exon:26589;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90988288 | 90988473 | 90988288 | ID=Msa0483120-mRNA-1:exon:26590;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90989194 | 90989261 | 90989194 | ID=Msa0483120-mRNA-1:exon:26591;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90989346 | 90989478 | 90989346 | ID=Msa0483120-mRNA-1:exon:26592;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90989561 | 90989632 | 90989561 | ID=Msa0483120-mRNA-1:exon:26593;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90989764 | 90989795 | 90989764 | ID=Msa0483120-mRNA-1:exon:26594;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90990022 | 90990152 | 90990022 | ID=Msa0483120-mRNA-1:exon:26595;Parent=Msa0483120-mRNA-1 |
| chr3_3 | exon | 90990303 | 90990710 | 90990303 | ID=Msa0483120-mRNA-1:exon:26596;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90985913 | 90986043 | 90985913 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90986800 | 90986864 | 90986800 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90987740 | 90987767 | 90987740 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90987854 | 90987974 | 90987854 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90988288 | 90988473 | 90988288 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90989194 | 90989261 | 90989194 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90989346 | 90989478 | 90989346 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90989561 | 90989632 | 90989561 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90989764 | 90989795 | 90989764 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | CDS | 90990022 | 90990127 | 90990022 | ID=Msa0483120-mRNA-1:cds;Parent=Msa0483120-mRNA-1 |
| chr3_3 | three_prime_UTR | 90990128 | 90990152 | 90990128 | ID=Msa0483120-mRNA-1:three_prime_utr;Parent=Msa0483120-mRNA-1 |
| chr3_3 | three_prime_UTR | 90990303 | 90990710 | 90990303 | ID=Msa0483120-mRNA-1:three_prime_utr;Parent=Msa0483120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
