Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159020 | XP_003624694.1 | 96.360 | 522 | 15 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1024 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159020 | Q2HVB6 | 96.360 | 522 | 15 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1024 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa1159020 | 0.802789 | 4.748241e-49 | -8.615850e-47 |
| Msa0120280 | Msa1159020 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0163510 | Msa1159020 | 0.806714 | 7.194536e-50 | -8.615850e-47 |
| Msa0185280 | Msa1159020 | 0.812963 | 3.253929e-51 | -8.615850e-47 |
| Msa0225620 | Msa1159020 | 0.807680 | 4.491492e-50 | -8.615850e-47 |
| Msa1071050 | Msa1159020 | 0.948593 | 6.934643e-107 | -8.615850e-47 |
| Msa1118450 | Msa1159020 | 0.936110 | 2.928323e-97 | -8.615850e-47 |
| Msa1159020 | Msa1267830 | 0.802913 | 4.477546e-49 | -8.615850e-47 |
| Msa1159020 | Msa1340550 | 0.969833 | 1.044053e-130 | -8.615850e-47 |
| Msa1159020 | Msa1420120 | 0.809071 | 2.267581e-50 | -8.615850e-47 |
| Msa0959520 | Msa1159020 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159020 | MtrunA17_Chr7g0253981 | 96.360 | 522 | 15 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1024 |
| Msa1159020 | MtrunA17_Chr5g0401031 | 35.185 | 486 | 291 | 9 | 30 | 511 | 13 | 478 | 7.57e-76 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159020 | AT1G28760.1 | 51.685 | 445 | 178 | 11 | 86 | 520 | 49 | 466 | 1.16e-150 | 440 |
| Msa1159020 | AT5G67610.1 | 34.694 | 490 | 277 | 12 | 31 | 509 | 16 | 473 | 1.88e-77 | 252 |
| Msa1159020 | AT5G67610.2 | 35.358 | 461 | 261 | 10 | 60 | 509 | 51 | 485 | 2.44e-76 | 249 |
| Msa1159020 | AT3G49840.2 | 31.772 | 491 | 272 | 15 | 30 | 509 | 17 | 455 | 7.08e-64 | 216 |
| Msa1159020 | AT3G49840.1 | 32.179 | 491 | 269 | 15 | 30 | 509 | 17 | 454 | 9.26e-64 | 215 |
Find 125 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCTCCTTCCTTAATTT+TGG | 0.056318 | 7_4:+48506211 | Msa1159020:CDS |
| CAAACTTCTGGGACTCAATT+AGG | 0.139513 | 7_4:+48509793 | Msa1159020:CDS |
| TGTGAGCGCGTTCAAGTTTC+TGG | 0.164433 | 7_4:+48506272 | Msa1159020:CDS |
| CAGGAAGTGGAAATGGATTT+TGG | 0.174652 | 7_4:+48510037 | Msa1159020:CDS |
| GGTGTTGTATCACCATCTTC+TGG | 0.180077 | 7_4:+48509760 | Msa1159020:intron |
| TTCCTGTACATTACCATATA+TGG | 0.198198 | 7_4:+48507042 | Msa1159020:CDS |
| TGTGAACTTCTTTCTGTTGC+CGG | 0.253295 | 7_4:-48509845 | None:intergenic |
| GAGATTGCATAACAAAATTA+AGG | 0.256111 | 7_4:+48506370 | Msa1159020:CDS |
| ATCAGACTGCCCCAAAATTA+AGG | 0.289907 | 7_4:-48506222 | None:intergenic |
| CTGGAGCTGCTTTAGGCTAC+TGG | 0.290809 | 7_4:+48507851 | Msa1159020:CDS |
| AAACTTCTGGGACTCAATTA+GGG | 0.296814 | 7_4:+48509794 | Msa1159020:CDS |
| ATTGAACTGCTATAATAAAA+TGG | 0.300837 | 7_4:-48506853 | None:intergenic |
| GGTTGCTCTTTCTGTACTAC+TGG | 0.305584 | 7_4:+48507816 | Msa1159020:intron |
| CAATGTGGAACAACCCTAAA+AGG | 0.312072 | 7_4:+48509049 | Msa1159020:CDS |
| AAATGGGCAATGCGCGTTAT+TGG | 0.321806 | 7_4:+48507940 | Msa1159020:CDS |
| ACGATCCAGTCAGTGAATTC+TGG | 0.325513 | 7_4:-48509934 | None:intergenic |
| GATTGTTCAGGCTTACAGTT+TGG | 0.335474 | 7_4:-48510230 | None:intergenic |
| TTGTTACCTTTGAGGGTGAT+AGG | 0.342713 | 7_4:-48505629 | None:intergenic |
| GAACAATCATGTCAAATCTA+TGG | 0.349932 | 7_4:+48510245 | Msa1159020:three_prime_UTR |
| AACAGTAACGAATGTAATTT+AGG | 0.354262 | 7_4:+48510136 | Msa1159020:three_prime_UTR |
| TGTACTACTGGGTATCATCT+TGG | 0.358173 | 7_4:+48507828 | Msa1159020:CDS |
| TAGATTTGACATGATTGTTC+AGG | 0.364828 | 7_4:-48510242 | None:intergenic |
| GTGTTGTATCACCATCTTCT+GGG | 0.371482 | 7_4:+48509761 | Msa1159020:CDS |
| ACTCACCACTGATCCATATA+TGG | 0.376935 | 7_4:-48507055 | None:intergenic |
| GGGGTGTACAGAAAGGGATT+TGG | 0.386641 | 7_4:+48506549 | Msa1159020:CDS |
| ATTCAATTCTTCAGAGTCTT+GGG | 0.388913 | 7_4:+48507217 | Msa1159020:CDS |
| TACTCTTGCAGTTGGAGCCT+TGG | 0.388943 | 7_4:+48508376 | Msa1159020:CDS |
| TATAGCAGTTCAATGGCTAT+AGG | 0.395624 | 7_4:+48506862 | Msa1159020:CDS |
| TAATTCATTGCATGTTACTT+TGG | 0.398470 | 7_4:+48506325 | Msa1159020:CDS |
| AATTTACGATCATAGAGAAT+TGG | 0.399637 | 7_4:-48507197 | None:intergenic |
| GGCTCCAATTGTTAGCAGTT+GGG | 0.402028 | 7_4:+48506828 | Msa1159020:CDS |
| AATTCAATTCTTCAGAGTCT+TGG | 0.407150 | 7_4:+48507216 | Msa1159020:CDS |
| GGGTTGCTCAGTTTGTGAAA+TGG | 0.409305 | 7_4:+48507923 | Msa1159020:CDS |
| CAAAGCAAGCTTTAGCTGAA+TGG | 0.415906 | 7_4:+48509902 | Msa1159020:CDS |
| GAGGAGAGTTGTTACCTTTG+AGG | 0.420427 | 7_4:-48505637 | None:intergenic |
| ACAGAGGCAGGAAGTGGAAA+TGG | 0.422390 | 7_4:+48510030 | Msa1159020:CDS |
| TGGCTCCAATTGTTAGCAGT+TGG | 0.424714 | 7_4:+48506827 | Msa1159020:CDS |
| GGTTGCTCAGTTTGTGAAAT+GGG | 0.425437 | 7_4:+48507924 | Msa1159020:CDS |
| ACTGCTTCCGAGCGAGAGTT+CGG | 0.428570 | 7_4:+48509978 | Msa1159020:CDS |
| AGGAGAGTTGTTACCTTTGA+GGG | 0.429598 | 7_4:-48505636 | None:intergenic |
| GGTGAGAGGAACCCGTGGTC+GGG | 0.430495 | 7_4:+48508957 | Msa1159020:CDS |
| CAATACAATTGCTTCATGAA+TGG | 0.432133 | 7_4:+48508432 | Msa1159020:CDS |
| ATGATGATTATTCACTAGAA+TGG | 0.434162 | 7_4:+48508935 | Msa1159020:CDS |
| TGATATTGAAAGACCAACTT+TGG | 0.437482 | 7_4:+48506187 | Msa1159020:CDS |
| AGGAGAAGATTGATCATTGT+TGG | 0.439643 | 7_4:-48505609 | None:intergenic |
| ATCTTGGCTGGAGCTGCTTT+AGG | 0.440307 | 7_4:+48507844 | Msa1159020:CDS |
| GGAACCCAACTGCTAACAAT+TGG | 0.440479 | 7_4:-48506832 | None:intergenic |
| AGAAGTTCACAAAGGAAGAA+TGG | 0.440891 | 7_4:+48509857 | Msa1159020:CDS |
| TTCAGCTAAAGCTTGCTTTG+TGG | 0.441989 | 7_4:-48509899 | None:intergenic |
| CTTTAGGCTACTGGATTGTC+AGG | 0.442622 | 7_4:+48507860 | Msa1159020:CDS |
| CAAGATCGATTGTGAAATAC+CGG | 0.445444 | 7_4:+48506613 | Msa1159020:CDS |
| GAAGTTCACAAAGGAAGAAT+GGG | 0.457343 | 7_4:+48509858 | Msa1159020:CDS |
| CTTTAGGAGGTGACTTGCTA+AGG | 0.458852 | 7_4:-48508987 | None:intergenic |
| AATTGAGTCCCAGAAGTTTG+TGG | 0.462194 | 7_4:-48509790 | None:intergenic |
| GTTACAGTTGCACTTAAAGA+AGG | 0.464576 | 7_4:+48506641 | Msa1159020:CDS |
| CGCCTCATTAGTCTTGCAGT+TGG | 0.467974 | 7_4:+48506787 | Msa1159020:CDS |
| TCTTTCTGTTGCCGGTCTTG+TGG | 0.469024 | 7_4:-48509837 | None:intergenic |
| TCATAGAGAATTGGTGCAAA+AGG | 0.472297 | 7_4:-48507188 | None:intergenic |
| AAAGCAAGCTTTAGCTGAAT+GGG | 0.473252 | 7_4:+48509903 | Msa1159020:CDS |
| CTTGATAATACTCTTGCAGT+TGG | 0.479961 | 7_4:+48508368 | Msa1159020:CDS |
| AAGCGCCATCATCAAATTCA+AGG | 0.480526 | 7_4:+48505520 | Msa1159020:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | 7_4:+48507886 | Msa1159020:CDS |
| TGATGATTATTCACTAGAAT+GGG | 0.484137 | 7_4:+48508936 | Msa1159020:CDS |
| GAATCGGATTCCACAGAGGC+AGG | 0.485362 | 7_4:+48510018 | Msa1159020:CDS |
| TGGATTGATACTGCTGCTGT+TGG | 0.488932 | 7_4:+48506807 | Msa1159020:CDS |
| GGTATGAAATTATTGCCAAC+TGG | 0.490927 | 7_4:+48507009 | Msa1159020:CDS |
| GACTGGAGGGGTGTACAGAA+AGG | 0.493026 | 7_4:+48506542 | Msa1159020:CDS |
| GATATTGAAAGACCAACTTT+GGG | 0.501028 | 7_4:+48506188 | Msa1159020:CDS |
| ATCCATATATGGTAATGTAC+AGG | 0.507199 | 7_4:-48507044 | None:intergenic |
| TATTCAACATTCCACAAGAC+CGG | 0.507281 | 7_4:+48509826 | Msa1159020:CDS |
| GCAACCCTTGAATTTGATGA+TGG | 0.509550 | 7_4:-48505525 | None:intergenic |
| CTACTGGGTATCATCTTGGC+TGG | 0.511645 | 7_4:+48507832 | Msa1159020:CDS |
| CTTAGCAAGTCACCTCCTAA+AGG | 0.513329 | 7_4:+48508988 | Msa1159020:CDS |
| CTCTCAGGAATTGCAACAGA+TGG | 0.513447 | 7_4:-48506350 | None:intergenic |
| TCAACATATCTAGTTTCATA+AGG | 0.515189 | 7_4:-48506587 | None:intergenic |
| GATTCCACAGAGGCAGGAAG+TGG | 0.517050 | 7_4:+48510024 | Msa1159020:CDS |
| ATTTCCACTTCCTGCCTCTG+TGG | 0.523838 | 7_4:-48510028 | None:intergenic |
| AAGGAATTCCGCCCGACCAC+GGG | 0.524500 | 7_4:-48508968 | None:intergenic |
| AAGATGGCAGTGTAGATGCC+GGG | 0.526101 | 7_4:+48507902 | Msa1159020:CDS |
| ATGTGCAGGAATAATACTCT+TGG | 0.528936 | 7_4:+48506497 | Msa1159020:intron |
| GTCTCGTCCGAACTCTCGCT+CGG | 0.529462 | 7_4:-48509985 | None:intergenic |
| GAGAGGAACCCGTGGTCGGG+CGG | 0.540107 | 7_4:+48508960 | Msa1159020:CDS |
| GCTTACAGTTTGGAAAATCC+AGG | 0.540329 | 7_4:-48510220 | None:intergenic |
| CGAGACAATGGAGAGTGAAT+CGG | 0.541615 | 7_4:+48510002 | Msa1159020:CDS |
| GAGTGAAGAGATGCACAATC+CGG | 0.541797 | 7_4:+48507242 | Msa1159020:CDS |
| GTCAGTGTGAAAAGGATGAC+TGG | 0.542317 | 7_4:+48506525 | Msa1159020:CDS |
| GAAGATGGCAGTGTAGATGC+CGG | 0.547920 | 7_4:+48507901 | Msa1159020:CDS |
| CGAGAGTTCGGACGAGACAA+TGG | 0.548252 | 7_4:+48509990 | Msa1159020:CDS |
| TGTGGCGAAAACCCAGAAGA+TGG | 0.564971 | 7_4:-48509772 | None:intergenic |
| GTTGCTCTTTCTGTACTACT+GGG | 0.565412 | 7_4:+48507817 | Msa1159020:CDS |
| CATCTCCAGAATTCACTGAC+TGG | 0.568556 | 7_4:+48509929 | Msa1159020:CDS |
| ACTGGAGGGGTGTACAGAAA+GGG | 0.573841 | 7_4:+48506543 | Msa1159020:CDS |
| GAAGGAGATACACCCAAAGT+TGG | 0.575490 | 7_4:-48506200 | None:intergenic |
| TGGTCTGACTCTCCTGTGAG+AGG | 0.576376 | 7_4:+48509078 | Msa1159020:CDS |
| GGGTGAGAGGAACCCGTGGT+CGG | 0.579700 | 7_4:+48508956 | Msa1159020:CDS |
| ATGTGGAATAGCCCTAAAAG+TGG | 0.582042 | 7_4:+48509015 | Msa1159020:CDS |
| TCTTCTCCTATCACCCTCAA+AGG | 0.590992 | 7_4:+48505623 | Msa1159020:CDS |
| TGGATGGTGTCAGTGTGAAA+AGG | 0.597753 | 7_4:+48506517 | Msa1159020:CDS |
| TTGGGGCAGTCTGATACTCA+AGG | 0.598505 | 7_4:+48506230 | Msa1159020:CDS |
| TTTCACAAACTGAGCAACCC+CGG | 0.604583 | 7_4:-48507920 | None:intergenic |
| GACTGCCCCAAAATTAAGGA+AGG | 0.605198 | 7_4:-48506218 | None:intergenic |
| ATCCAACTGCAAGACTAATG+AGG | 0.607041 | 7_4:-48506789 | None:intergenic |
| CATTACCATATATGGATCAG+TGG | 0.608996 | 7_4:+48507050 | Msa1159020:CDS |
| AGCGCCATCATCAAATTCAA+GGG | 0.613006 | 7_4:+48505521 | Msa1159020:CDS |
| GGTATCTCAAGATTGAAGCT+CGG | 0.614150 | 7_4:+48506293 | Msa1159020:CDS |
| TGGAAAGACATACCTCTCAC+AGG | 0.621342 | 7_4:-48509090 | None:intergenic |
| GGATCGTTGACCATGCAGAT+CGG | 0.623735 | 7_4:+48509950 | Msa1159020:CDS |
| GTTGGCGAGTGAAGAAGTGA+AGG | 0.631703 | 7_4:-48505591 | None:intergenic |
| GTGTGAAAAGGATGACTGGA+GGG | 0.637824 | 7_4:+48506529 | Msa1159020:CDS |
| TAACAACTAGAGTGATGAGG+TGG | 0.642956 | 7_4:+48505465 | Msa1159020:exon |
| ACAACCCTAAAAGGACGTCA+TGG | 0.645076 | 7_4:+48509058 | Msa1159020:CDS |
| AACTTCTGGGACTCAATTAG+GGG | 0.646073 | 7_4:+48509795 | Msa1159020:CDS |
| TATTCACTAGAATGGGTGAG+AGG | 0.650160 | 7_4:+48508943 | Msa1159020:CDS |
| AGATGGCAGTGTAGATGCCG+GGG | 0.652953 | 7_4:+48507903 | Msa1159020:CDS |
| AGTGCAACTGTAACTGAACC+CGG | 0.653087 | 7_4:-48506632 | None:intergenic |
| AACAGCTCCACAAAAGACCA+AGG | 0.662563 | 7_4:-48508393 | None:intergenic |
| AAGTAACAACTAGAGTGATG+AGG | 0.669323 | 7_4:+48505462 | Msa1159020:exon |
| GCAGGAATAATACTCTTGGA+TGG | 0.680449 | 7_4:+48506501 | Msa1159020:intron |
| AAGATCGATTGTGAAATACC+GGG | 0.694905 | 7_4:+48506614 | Msa1159020:CDS |
| CAACAGAAAGAAGTTCACAA+AGG | 0.699080 | 7_4:+48509849 | Msa1159020:CDS |
| GTGGCTCTAAAGCAACAATG+TGG | 0.703894 | 7_4:+48509034 | Msa1159020:CDS |
| AGTGTGAAAAGGATGACTGG+AGG | 0.709404 | 7_4:+48506528 | Msa1159020:CDS |
| TGTGAAAAGGATGACTGGAG+GGG | 0.715947 | 7_4:+48506530 | Msa1159020:CDS |
| GAATGGGTGAGAGGAACCCG+TGG | 0.719365 | 7_4:+48508952 | Msa1159020:CDS |
| GAGTGAATCGGATTCCACAG+AGG | 0.750499 | 7_4:+48510014 | Msa1159020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAT+TGG | - | chr7_4:48505739-48505758 | None:intergenic | 0.0% |
| !! | ATATATGTATATCTTATATA+CGG | + | chr7_4:48507433-48507452 | Msa1159020:intron | 10.0% |
| !! | TAAATTATTATATACTGAAA+GGG | - | chr7_4:48507633-48507652 | None:intergenic | 10.0% |
| !! | TTAAATTATTATATACTGAA+AGG | - | chr7_4:48507634-48507653 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAGAATAAATA+GGG | - | chr7_4:48508327-48508346 | None:intergenic | 10.0% |
| !! | AAAAAAAAATCAGAATAAAT+AGG | - | chr7_4:48508328-48508347 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTTACATAATAT+AGG | + | chr7_4:48508700-48508719 | Msa1159020:intron | 10.0% |
| !! | AAAAATATAAAAAATGATTC+TGG | - | chr7_4:48509231-48509250 | None:intergenic | 10.0% |
| !!! | TAAGATTTTTTAAAATTTCT+TGG | + | chr7_4:48509509-48509528 | Msa1159020:intron | 10.0% |
| !!! | ATAAATTGTTGCATTTTTTA+TGG | + | chr7_4:48507293-48507312 | Msa1159020:intron | 15.0% |
| !! | AAATTATTATATACTGAAAG+GGG | - | chr7_4:48507632-48507651 | None:intergenic | 15.0% |
| !!! | AATCCATTTCTTTATTTATT+TGG | + | chr7_4:48508284-48508303 | Msa1159020:intron | 15.0% |
| !! | AAAAAAATCAGAATAAATAG+GGG | - | chr7_4:48508326-48508345 | None:intergenic | 15.0% |
| !! | AAATAATGATAAAATAACAC+AGG | - | chr7_4:48508796-48508815 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGTTGATTGTAA+TGG | + | chr7_4:48509441-48509460 | Msa1159020:intron | 15.0% |
| !! | AACAAAAAAATCAAATTCGA+TGG | + | chr7_4:48505493-48505512 | Msa1159020:CDS | 20.0% |
| !! | ACAAAAAAATCAAATTCGAT+GGG | + | chr7_4:48505494-48505513 | Msa1159020:CDS | 20.0% |
| !! | GTAAAACATAATAAGACAAA+AGG | - | chr7_4:48506074-48506093 | None:intergenic | 20.0% |
| !!! | AAATTAAGGTTTGTTTTCAT+AGG | + | chr7_4:48506384-48506403 | Msa1159020:CDS | 20.0% |
| !! | ATTGAACTGCTATAATAAAA+TGG | - | chr7_4:48506856-48506875 | None:intergenic | 20.0% |
| !!! | ATTTTATTATAGCAGTTCAA+TGG | + | chr7_4:48506855-48506874 | Msa1159020:CDS | 20.0% |
| !!! | CATTATAATCATTCTTTTTC+AGG | + | chr7_4:48506897-48506916 | Msa1159020:CDS | 20.0% |
| !! | AATTACCTTTGTATTATACA+TGG | + | chr7_4:48506925-48506944 | Msa1159020:intron | 20.0% |
| !! | CATAACACAAAAGTAATATT+AGG | - | chr7_4:48507145-48507164 | None:intergenic | 20.0% |
| !! | TATCTAACAAAAAAATAGAC+AGG | - | chr7_4:48507276-48507295 | None:intergenic | 20.0% |
| !!! | ATATAATAAGGTTTTCTCTT+TGG | + | chr7_4:48507547-48507566 | Msa1159020:intron | 20.0% |
| !!! | TATAATAAGGTTTTCTCTTT+GGG | + | chr7_4:48507548-48507567 | Msa1159020:intron | 20.0% |
| !! | TATTTCATAAGAAGAATTGA+CGG | - | chr7_4:48507776-48507795 | None:intergenic | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | chr7_4:48507886-48507905 | Msa1159020:CDS | 20.0% |
| !! | AGTTAGAAAAAGACATATAT+TGG | + | chr7_4:48508193-48508212 | Msa1159020:intron | 20.0% |
| !! | AAAAAGACATATATTGGTAT+TGG | + | chr7_4:48508199-48508218 | Msa1159020:intron | 20.0% |
| !! | CAACCAAATAAATAAAGAAA+TGG | - | chr7_4:48508290-48508309 | None:intergenic | 20.0% |
| !!! | AAAGTATTAATAAAGCTGAA+AGG | - | chr7_4:48508472-48508491 | None:intergenic | 20.0% |
| !! | GAAGAATCAAATAATATCAT+AGG | - | chr7_4:48509469-48509488 | None:intergenic | 20.0% |
| !! | ATGATATTATTTGATTCTTC+TGG | + | chr7_4:48509469-48509488 | Msa1159020:intron | 20.0% |
| ! | TTTCTTGATGTGATTCTATT+GGG | + | chr7_4:48505858-48505877 | Msa1159020:intron | 25.0% |
| ! | ATTTGAAGATTTATATGAGC+TGG | + | chr7_4:48505905-48505924 | Msa1159020:intron | 25.0% |
| ! | CGACTATTTCAAGATTTATA+TGG | + | chr7_4:48505956-48505975 | Msa1159020:intron | 25.0% |
| !! | TAATTCATTGCATGTTACTT+TGG | + | chr7_4:48506325-48506344 | Msa1159020:CDS | 25.0% |
| ! | GAGATTGCATAACAAAATTA+AGG | + | chr7_4:48506370-48506389 | Msa1159020:CDS | 25.0% |
| !! | TCAACATATCTAGTTTCATA+AGG | - | chr7_4:48506590-48506609 | None:intergenic | 25.0% |
| ! | GAAATCCATGTATAATACAA+AGG | - | chr7_4:48506933-48506952 | None:intergenic | 25.0% |
| ! | AAGAAACTGGTTAGAAAAAT+TGG | - | chr7_4:48506974-48506993 | None:intergenic | 25.0% |
| !!! | TTTTGTGTTATGTTTTAGCT+TGG | + | chr7_4:48507153-48507172 | Msa1159020:intron | 25.0% |
| ! | AATTTACGATCATAGAGAAT+TGG | - | chr7_4:48507200-48507219 | None:intergenic | 25.0% |
| ! | GATGTTCAATATAGATGTTA+AGG | - | chr7_4:48507373-48507392 | None:intergenic | 25.0% |
| ! | AACATCTATATTGAACATCT+AGG | + | chr7_4:48507374-48507393 | Msa1159020:intron | 25.0% |
| ! | ATTATATTTCAAAGATCGCA+TGG | - | chr7_4:48507534-48507553 | None:intergenic | 25.0% |
| !!! | GCGATCTTTGAAATATAATA+AGG | + | chr7_4:48507535-48507554 | Msa1159020:intron | 25.0% |
| ! | AAAGCACAGAATCTTATTAT+AGG | + | chr7_4:48508637-48508656 | Msa1159020:intron | 25.0% |
| ! | AAACAGTAAAAACAGCATAT+GGG | - | chr7_4:48508743-48508762 | None:intergenic | 25.0% |
| ! | AAAACAGTAAAAACAGCATA+TGG | - | chr7_4:48508744-48508763 | None:intergenic | 25.0% |
| ! | TTGAATGAATGATCTTTGAT+GGG | - | chr7_4:48508836-48508855 | None:intergenic | 25.0% |
| ! | TTGAAGTTTGTAATTTATGC+AGG | + | chr7_4:48508896-48508915 | Msa1159020:intron | 25.0% |
| ! | ATGATGATTATTCACTAGAA+TGG | + | chr7_4:48508935-48508954 | Msa1159020:CDS | 25.0% |
| ! | TGATGATTATTCACTAGAAT+GGG | + | chr7_4:48508936-48508955 | Msa1159020:CDS | 25.0% |
| ! | TTATCACATATCAACAAGAT+TGG | - | chr7_4:48509113-48509132 | None:intergenic | 25.0% |
| ! | TAATGTATACTGCATGTTAT+TGG | + | chr7_4:48509130-48509149 | Msa1159020:intron | 25.0% |
| !! | AGATTTTGTCTACCAAAATA+TGG | + | chr7_4:48509160-48509179 | Msa1159020:intron | 25.0% |
| !! | GATTTTGTCTACCAAAATAT+GGG | + | chr7_4:48509161-48509180 | Msa1159020:intron | 25.0% |
| ! | TGTCAAAAAAAAAACTGAAG+TGG | + | chr7_4:48509272-48509291 | Msa1159020:intron | 25.0% |
| !!! | ATGGATTTTGGCTTTTTAAT+TGG | + | chr7_4:48510049-48510068 | Msa1159020:CDS | 25.0% |
| ! | TATGAAAAATCAATTTCTGC+TGG | - | chr7_4:48510107-48510126 | None:intergenic | 25.0% |
| !!! | AGCAGAAATTGATTTTTCAT+AGG | + | chr7_4:48510106-48510125 | Msa1159020:three_prime_UTR | 25.0% |
| !!! | GCAGAAATTGATTTTTCATA+GGG | + | chr7_4:48510107-48510126 | Msa1159020:three_prime_UTR | 25.0% |
| !!! | AATTGATTTTTCATAGGGTT+AGG | + | chr7_4:48510112-48510131 | Msa1159020:three_prime_UTR | 25.0% |
| ! | AACAGTAACGAATGTAATTT+AGG | + | chr7_4:48510136-48510155 | Msa1159020:three_prime_UTR | 25.0% |
| ! | TCAGAAAAATATCTACATGT+TGG | - | chr7_4:48510195-48510214 | None:intergenic | 25.0% |
| GAAAGAAGAGAAAAAGAACA+AGG | - | chr7_4:48505568-48505587 | None:intergenic | 30.0% | |
| ! | CGAAAATTATAGCTTTTTGC+TGG | - | chr7_4:48505805-48505824 | None:intergenic | 30.0% |
| ! | TCTCACTTGTCAATTCTTTT+TGG | + | chr7_4:48505835-48505854 | Msa1159020:intron | 30.0% |
| GTTTCTTGATGTGATTCTAT+TGG | + | chr7_4:48505857-48505876 | Msa1159020:intron | 30.0% | |
| CTTGTTTCCTAGATAGTAAT+TGG | + | chr7_4:48506038-48506057 | Msa1159020:intron | 30.0% | |
| ! | AAACATAACTTGCACACATT+TGG | - | chr7_4:48506114-48506133 | None:intergenic | 30.0% |
| CATTTGAAAATGATCTCAGT+GGG | + | chr7_4:48506144-48506163 | Msa1159020:intron | 30.0% | |
| TGATATTGAAAGACCAACTT+TGG | + | chr7_4:48506187-48506206 | Msa1159020:CDS | 30.0% | |
| GATATTGAAAGACCAACTTT+GGG | + | chr7_4:48506188-48506207 | Msa1159020:CDS | 30.0% | |
| ! | TGTATCTCCTTCCTTAATTT+TGG | + | chr7_4:48506211-48506230 | Msa1159020:CDS | 30.0% |
| ! | GTATCTCCTTCCTTAATTTT+GGG | + | chr7_4:48506212-48506231 | Msa1159020:CDS | 30.0% |
| ! | TATCTCCTTCCTTAATTTTG+GGG | + | chr7_4:48506213-48506232 | Msa1159020:CDS | 30.0% |
| !! | ATTTTGTTATGCAATCTCTC+AGG | - | chr7_4:48506368-48506387 | None:intergenic | 30.0% |
| ! | ATATTTCCCATTTTCTGACA+CGG | - | chr7_4:48506677-48506696 | None:intergenic | 30.0% |
| AAACTGGTTAGAAAAATTGG+AGG | - | chr7_4:48506971-48506990 | None:intergenic | 30.0% | |
| !!! | AGGAAATTTTTTCTTCCAGT+TGG | - | chr7_4:48507027-48507046 | None:intergenic | 30.0% |
| TTCCTGTACATTACCATATA+TGG | + | chr7_4:48507042-48507061 | Msa1159020:CDS | 30.0% | |
| ! | ATCCATATATGGTAATGTAC+AGG | - | chr7_4:48507047-48507066 | None:intergenic | 30.0% |
| AATTCAATTCTTCAGAGTCT+TGG | + | chr7_4:48507216-48507235 | Msa1159020:CDS | 30.0% | |
| ATTCAATTCTTCAGAGTCTT+GGG | + | chr7_4:48507217-48507236 | Msa1159020:CDS | 30.0% | |
| AAAAACCAACCAAAAGGATT+GGG | - | chr7_4:48507402-48507421 | None:intergenic | 30.0% | |
| AAAAAACCAACCAAAAGGAT+TGG | - | chr7_4:48507403-48507422 | None:intergenic | 30.0% | |
| TGAAGAAAAAACCAACCAAA+AGG | - | chr7_4:48507408-48507427 | None:intergenic | 30.0% | |
| ! | TATACGGTGAGCTAAATTTT+TGG | + | chr7_4:48507449-48507468 | Msa1159020:intron | 30.0% |
| ! | ATACGGTGAGCTAAATTTTT+GGG | + | chr7_4:48507450-48507469 | Msa1159020:intron | 30.0% |
| !! | ATTGGTAATGATTCTGAAAG+TGG | + | chr7_4:48508217-48508236 | Msa1159020:intron | 30.0% |
| CAATACAATTGCTTCATGAA+TGG | + | chr7_4:48508432-48508451 | Msa1159020:CDS | 30.0% | |
| !! | TGCATTTGCATAGTCATTTT+AGG | + | chr7_4:48508514-48508533 | Msa1159020:intron | 30.0% |
| ! | AGTAGATGAAATGGTTTTCA+TGG | + | chr7_4:48508557-48508576 | Msa1159020:intron | 30.0% |
| CTTGAATGAATGATCTTTGA+TGG | - | chr7_4:48508837-48508856 | None:intergenic | 30.0% | |
| CATCAAAGATCATTCATTCA+AGG | + | chr7_4:48508835-48508854 | Msa1159020:intron | 30.0% | |
| ! | CTATTCCACATTTTTCCTTT+AGG | - | chr7_4:48509006-48509025 | None:intergenic | 30.0% |
| ! | ATTCAGTAGGCATAATTTTC+GGG | - | chr7_4:48509204-48509223 | None:intergenic | 30.0% |
| ! | CATTCAGTAGGCATAATTTT+CGG | - | chr7_4:48509205-48509224 | None:intergenic | 30.0% |
| !! | TTATAGTGGATCAGAATTCA+GGG | - | chr7_4:48509323-48509342 | None:intergenic | 30.0% |
| !! | TTTATAGTGGATCAGAATTC+AGG | - | chr7_4:48509324-48509343 | None:intergenic | 30.0% |
| CAATTATAGAAGCTGAGTTA+TGG | - | chr7_4:48509359-48509378 | None:intergenic | 30.0% | |
| AAATCTTCCATTCAGATAGA+TGG | + | chr7_4:48509380-48509399 | Msa1159020:intron | 30.0% | |
| ACTTTATCCATCTATCTGAA+TGG | - | chr7_4:48509390-48509409 | None:intergenic | 30.0% | |
| TAATTCACTTTCTCTGTTTC+AGG | + | chr7_4:48509739-48509758 | Msa1159020:intron | 30.0% | |
| TAGATTTGACATGATTGTTC+AGG | - | chr7_4:48510245-48510264 | None:intergenic | 30.0% | |
| GAACAATCATGTCAAATCTA+TGG | + | chr7_4:48510245-48510264 | Msa1159020:three_prime_UTR | 30.0% | |
| AAGTAACAACTAGAGTGATG+AGG | + | chr7_4:48505462-48505481 | Msa1159020:exon | 35.0% | |
| AGAGAAAAAGAACAAGGTTG+AGG | - | chr7_4:48505562-48505581 | None:intergenic | 35.0% | |
| AGGAGAAGATTGATCATTGT+TGG | - | chr7_4:48505612-48505631 | None:intergenic | 35.0% | |
| ATCGAAAAGAGAATGAGAAG+AGG | - | chr7_4:48505659-48505678 | None:intergenic | 35.0% | |
| CGGTAAAAAGAAGAAATGCA+TGG | - | chr7_4:48505687-48505706 | None:intergenic | 35.0% | |
| !! | ACCGCTAATTCATTTTTCCT+AGG | + | chr7_4:48505703-48505722 | Msa1159020:intron | 35.0% |
| CCCTAGGAAAAATGAATTAG+CGG | - | chr7_4:48505707-48505726 | None:intergenic | 35.0% | |
| !! | CCGCTAATTCATTTTTCCTA+GGG | + | chr7_4:48505704-48505723 | Msa1159020:intron | 35.0% |
| AAATTGGAGAAAGAAACCCT+AGG | - | chr7_4:48505723-48505742 | None:intergenic | 35.0% | |
| ! | AACTTGTTTCGTTGCACTTT+AGG | + | chr7_4:48505769-48505788 | Msa1159020:intron | 35.0% |
| ACTTGTTTCGTTGCACTTTA+GGG | + | chr7_4:48505770-48505789 | Msa1159020:intron | 35.0% | |
| TGATGTGATTCTATTGGGTT+TGG | + | chr7_4:48505863-48505882 | Msa1159020:intron | 35.0% | |
| AGTGACACCAATTACTATCT+AGG | - | chr7_4:48506048-48506067 | None:intergenic | 35.0% | |
| GCACACATTTGGATAATTGA+TGG | - | chr7_4:48506103-48506122 | None:intergenic | 35.0% | |
| GCATTTGAAAATGATCTCAG+TGG | + | chr7_4:48506143-48506162 | Msa1159020:intron | 35.0% | |
| !! | AATTGCTGTTTCTTATGTGC+AGG | + | chr7_4:48506483-48506502 | Msa1159020:intron | 35.0% |
| ATGTGCAGGAATAATACTCT+TGG | + | chr7_4:48506497-48506516 | Msa1159020:intron | 35.0% | |
| CAAGATCGATTGTGAAATAC+CGG | + | chr7_4:48506613-48506632 | Msa1159020:CDS | 35.0% | |
| AAGATCGATTGTGAAATACC+GGG | + | chr7_4:48506614-48506633 | Msa1159020:CDS | 35.0% | |
| GTTACAGTTGCACTTAAAGA+AGG | + | chr7_4:48506641-48506660 | Msa1159020:CDS | 35.0% | |
| TTTCTTCCGTGTCAGAAAAT+GGG | + | chr7_4:48506668-48506687 | Msa1159020:intron | 35.0% | |
| TATAGCAGTTCAATGGCTAT+AGG | + | chr7_4:48506862-48506881 | Msa1159020:CDS | 35.0% | |
| GGTATGAAATTATTGCCAAC+TGG | + | chr7_4:48507009-48507028 | Msa1159020:CDS | 35.0% | |
| CATTACCATATATGGATCAG+TGG | + | chr7_4:48507050-48507069 | Msa1159020:CDS | 35.0% | |
| !! | TGGTGAGTTTGGTTCATTTT+TGG | + | chr7_4:48507070-48507089 | Msa1159020:intron | 35.0% |
| !!! | TTATGTTTTAGCTTGGAGCT+GGG | + | chr7_4:48507160-48507179 | Msa1159020:intron | 35.0% |
| TCATAGAGAATTGGTGCAAA+AGG | - | chr7_4:48507191-48507210 | None:intergenic | 35.0% | |
| AAATAGACAGGTACACTTAC+CGG | - | chr7_4:48507264-48507283 | None:intergenic | 35.0% | |
| ATATTTCAAAGATCGCATGG+TGG | - | chr7_4:48507531-48507550 | None:intergenic | 35.0% | |
| GTCTTCCATCATATGGAATT+TGG | + | chr7_4:48507739-48507758 | Msa1159020:intron | 35.0% | |
| ! | ACTTTACCTCTATGATTTGC+AGG | + | chr7_4:48507795-48507814 | Msa1159020:intron | 35.0% |
| !!! | TGGAACTACTTTTGTTTTGC+AGG | + | chr7_4:48507960-48507979 | Msa1159020:CDS | 35.0% |
| CAAAACATGTCACATATGAC+AGG | - | chr7_4:48508043-48508062 | None:intergenic | 35.0% | |
| ! | CATATGTGACATGTTTTGCT+AGG | + | chr7_4:48508045-48508064 | Msa1159020:intron | 35.0% |
| !! | ATATTTTTGATGCAGCTGCA+CGG | + | chr7_4:48508252-48508271 | Msa1159020:intron | 35.0% |
| ! | CTTGATAATACTCTTGCAGT+TGG | + | chr7_4:48508368-48508387 | Msa1159020:CDS | 35.0% |
| !!! | TTTTAGGTTTGTCTTGTCCA+AGG | + | chr7_4:48508530-48508549 | Msa1159020:intron | 35.0% |
| !! | TGCTAACAACTTGCTACTAA+GGG | + | chr7_4:48508580-48508599 | Msa1159020:intron | 35.0% |
| ! | TCATTCATTCAAGGCATTCA+AGG | + | chr7_4:48508844-48508863 | Msa1159020:intron | 35.0% |
| ! | TTCCACATTTTTCCTTTAGG+AGG | - | chr7_4:48509003-48509022 | None:intergenic | 35.0% |
| !!! | TTGCTTTAGAGCCACTTTTA+GGG | - | chr7_4:48509029-48509048 | None:intergenic | 35.0% |
| TTGGTAGACAAAATCTTGCT+TGG | - | chr7_4:48509156-48509175 | None:intergenic | 35.0% | |
| ! | AAGACAGACTACCCATATTT+TGG | - | chr7_4:48509175-48509194 | None:intergenic | 35.0% |
| ! | TGATTCTGGTTACATTCAGT+AGG | - | chr7_4:48509217-48509236 | None:intergenic | 35.0% |
| AATTCAGGGCATATGCATAT+TGG | - | chr7_4:48509309-48509328 | None:intergenic | 35.0% | |
| ! | GACATCAAAGTGCTTTATAG+TGG | - | chr7_4:48509337-48509356 | None:intergenic | 35.0% |
| TTTCTGATTTCTTGACCTCT+GGG | + | chr7_4:48509540-48509559 | Msa1159020:intron | 35.0% | |
| ! | GTGCTATTACTGAAAACAAG+TGG | + | chr7_4:48509663-48509682 | Msa1159020:intron | 35.0% |
| !! | AAACTTCTGGGACTCAATTA+GGG | + | chr7_4:48509794-48509813 | Msa1159020:CDS | 35.0% |
| TATTCAACATTCCACAAGAC+CGG | + | chr7_4:48509826-48509845 | Msa1159020:CDS | 35.0% | |
| CAACAGAAAGAAGTTCACAA+AGG | + | chr7_4:48509849-48509868 | Msa1159020:CDS | 35.0% | |
| AGAAGTTCACAAAGGAAGAA+TGG | + | chr7_4:48509857-48509876 | Msa1159020:CDS | 35.0% | |
| GAAGTTCACAAAGGAAGAAT+GGG | + | chr7_4:48509858-48509877 | Msa1159020:CDS | 35.0% | |
| ! | AAAGCAAGCTTTAGCTGAAT+GGG | + | chr7_4:48509903-48509922 | Msa1159020:CDS | 35.0% |
| ! | GATATTTTTCTGACTTTGCC+TGG | + | chr7_4:48510202-48510221 | Msa1159020:three_prime_UTR | 35.0% |
| TAACAACTAGAGTGATGAGG+TGG | + | chr7_4:48505465-48505484 | Msa1159020:exon | 40.0% | |
| AAGCGCCATCATCAAATTCA+AGG | + | chr7_4:48505520-48505539 | Msa1159020:CDS | 40.0% | |
| AGCGCCATCATCAAATTCAA+GGG | + | chr7_4:48505521-48505540 | Msa1159020:CDS | 40.0% | |
| GCAACCCTTGAATTTGATGA+TGG | - | chr7_4:48505528-48505547 | None:intergenic | 40.0% | |
| ! | TTGTTACCTTTGAGGGTGAT+AGG | - | chr7_4:48505632-48505651 | None:intergenic | 40.0% |
| AGGAGAGTTGTTACCTTTGA+GGG | - | chr7_4:48505639-48505658 | None:intergenic | 40.0% | |
| ATCAGACTGCCCCAAAATTA+AGG | - | chr7_4:48506225-48506244 | None:intergenic | 40.0% | |
| GGTATCTCAAGATTGAAGCT+CGG | + | chr7_4:48506293-48506312 | Msa1159020:CDS | 40.0% | |
| AGTGCATAACACCTTCCTAT+CGG | + | chr7_4:48506409-48506428 | Msa1159020:intron | 40.0% | |
| GCAGGAATAATACTCTTGGA+TGG | + | chr7_4:48506501-48506520 | Msa1159020:intron | 40.0% | |
| GTTTCTTCCGTGTCAGAAAA+TGG | + | chr7_4:48506667-48506686 | Msa1159020:intron | 40.0% | |
| CTGCACGAATTGTTGTAGAA+CGG | - | chr7_4:48506753-48506772 | None:intergenic | 40.0% | |
| ! | TTCGTGCAGATTTTCAGCAA+TGG | + | chr7_4:48506764-48506783 | Msa1159020:intron | 40.0% |
| ATCCAACTGCAAGACTAATG+AGG | - | chr7_4:48506792-48506811 | None:intergenic | 40.0% | |
| ACTCACCACTGATCCATATA+TGG | - | chr7_4:48507058-48507077 | None:intergenic | 40.0% | |
| ATATGGATCAGTGGTGAGTT+TGG | + | chr7_4:48507059-48507078 | Msa1159020:intron | 40.0% | |
| !!! | GTTATGTTTTAGCTTGGAGC+TGG | + | chr7_4:48507159-48507178 | Msa1159020:intron | 40.0% |
| ! | ATCTAGGTTCCCAATCCTTT+TGG | + | chr7_4:48507390-48507409 | Msa1159020:intron | 40.0% |
| AGTTGACAATTCTTGCCTAG+CGG | - | chr7_4:48507719-48507738 | None:intergenic | 40.0% | |
| GTCAACTGTCTTCCATCATA+TGG | + | chr7_4:48507732-48507751 | Msa1159020:intron | 40.0% | |
| GCACACCAAATTCCATATGA+TGG | - | chr7_4:48507747-48507766 | None:intergenic | 40.0% | |
| TCATAAGAAGAATTGACGGC+TGG | - | chr7_4:48507772-48507791 | None:intergenic | 40.0% | |
| GTTGCTCTTTCTGTACTACT+GGG | + | chr7_4:48507817-48507836 | Msa1159020:CDS | 40.0% | |
| TGTACTACTGGGTATCATCT+TGG | + | chr7_4:48507828-48507847 | Msa1159020:CDS | 40.0% | |
| GGTTGCTCAGTTTGTGAAAT+GGG | + | chr7_4:48507924-48507943 | Msa1159020:CDS | 40.0% | |
| CATTTCATCTACTGCTTCCT+TGG | - | chr7_4:48508550-48508569 | None:intergenic | 40.0% | |
| CAAGGAAGCAGTAGATGAAA+TGG | + | chr7_4:48508548-48508567 | Msa1159020:intron | 40.0% | |
| !! | GTGCTAACAACTTGCTACTA+AGG | + | chr7_4:48508579-48508598 | Msa1159020:intron | 40.0% |
| CTTGCTACTAAGGGATGAAT+TGG | + | chr7_4:48508589-48508608 | Msa1159020:intron | 40.0% | |
| ! | TTTGATGGGTCACGACAAAA+GGG | - | chr7_4:48508822-48508841 | None:intergenic | 40.0% |
| TATTCACTAGAATGGGTGAG+AGG | + | chr7_4:48508943-48508962 | Msa1159020:CDS | 40.0% | |
| CACCTCCTAAAGGAAAAATG+TGG | + | chr7_4:48508998-48509017 | Msa1159020:CDS | 40.0% | |
| ATGTGGAATAGCCCTAAAAG+TGG | + | chr7_4:48509015-48509034 | Msa1159020:CDS | 40.0% | |
| !!! | GTTGCTTTAGAGCCACTTTT+AGG | - | chr7_4:48509030-48509049 | None:intergenic | 40.0% |
| CAATGTGGAACAACCCTAAA+AGG | + | chr7_4:48509049-48509068 | Msa1159020:CDS | 40.0% | |
| GTTTCTGATTTCTTGACCTC+TGG | + | chr7_4:48509539-48509558 | Msa1159020:intron | 40.0% | |
| GTGTTGTATCACCATCTTCT+GGG | + | chr7_4:48509761-48509780 | Msa1159020:CDS | 40.0% | |
| AATTGAGTCCCAGAAGTTTG+TGG | - | chr7_4:48509793-48509812 | None:intergenic | 40.0% | |
| !! | CAAACTTCTGGGACTCAATT+AGG | + | chr7_4:48509793-48509812 | Msa1159020:CDS | 40.0% |
| !! | AACTTCTGGGACTCAATTAG+GGG | + | chr7_4:48509795-48509814 | Msa1159020:CDS | 40.0% |
| TGTGAACTTCTTTCTGTTGC+CGG | - | chr7_4:48509848-48509867 | None:intergenic | 40.0% | |
| ! | TTCAGCTAAAGCTTGCTTTG+TGG | - | chr7_4:48509902-48509921 | None:intergenic | 40.0% |
| ! | CAAAGCAAGCTTTAGCTGAA+TGG | + | chr7_4:48509902-48509921 | Msa1159020:CDS | 40.0% |
| !! | CAGGAAGTGGAAATGGATTT+TGG | + | chr7_4:48510037-48510056 | Msa1159020:CDS | 40.0% |
| GCTTACAGTTTGGAAAATCC+AGG | - | chr7_4:48510223-48510242 | None:intergenic | 40.0% | |
| GATTGTTCAGGCTTACAGTT+TGG | - | chr7_4:48510233-48510252 | None:intergenic | 40.0% | |
| TCTTCTCCTATCACCCTCAA+AGG | + | chr7_4:48505623-48505642 | Msa1159020:CDS | 45.0% | |
| GAGGAGAGTTGTTACCTTTG+AGG | - | chr7_4:48505640-48505659 | None:intergenic | 45.0% | |
| AGCTGGTTGATCTTCCTTTG+TGG | + | chr7_4:48505922-48505941 | Msa1159020:intron | 45.0% | |
| GCTGGTTGATCTTCCTTTGT+GGG | + | chr7_4:48505923-48505942 | Msa1159020:intron | 45.0% | |
| TTGATCTTCCTTTGTGGGCT+GGG | + | chr7_4:48505928-48505947 | Msa1159020:intron | 45.0% | |
| GAAGGAGATACACCCAAAGT+TGG | - | chr7_4:48506203-48506222 | None:intergenic | 45.0% | |
| GACTGCCCCAAAATTAAGGA+AGG | - | chr7_4:48506221-48506240 | None:intergenic | 45.0% | |
| CTCTCAGGAATTGCAACAGA+TGG | - | chr7_4:48506353-48506372 | None:intergenic | 45.0% | |
| ! | TGGATGGTGTCAGTGTGAAA+AGG | + | chr7_4:48506517-48506536 | Msa1159020:CDS | 45.0% |
| GTCAGTGTGAAAAGGATGAC+TGG | + | chr7_4:48506525-48506544 | Msa1159020:CDS | 45.0% | |
| AGTGTGAAAAGGATGACTGG+AGG | + | chr7_4:48506528-48506547 | Msa1159020:CDS | 45.0% | |
| GTGTGAAAAGGATGACTGGA+GGG | + | chr7_4:48506529-48506548 | Msa1159020:CDS | 45.0% | |
| TGTGAAAAGGATGACTGGAG+GGG | + | chr7_4:48506530-48506549 | Msa1159020:CDS | 45.0% | |
| AGTGCAACTGTAACTGAACC+CGG | - | chr7_4:48506635-48506654 | None:intergenic | 45.0% | |
| TGGATTGATACTGCTGCTGT+TGG | + | chr7_4:48506807-48506826 | Msa1159020:CDS | 45.0% | |
| TGGCTCCAATTGTTAGCAGT+TGG | + | chr7_4:48506827-48506846 | Msa1159020:CDS | 45.0% | |
| GGCTCCAATTGTTAGCAGTT+GGG | + | chr7_4:48506828-48506847 | Msa1159020:CDS | 45.0% | |
| GGAACCCAACTGCTAACAAT+TGG | - | chr7_4:48506835-48506854 | None:intergenic | 45.0% | |
| TTTCTTCCGACTGTGATGCA+GGG | + | chr7_4:48506988-48507007 | Msa1159020:intron | 45.0% | |
| TTCATACCCTGCATCACAGT+CGG | - | chr7_4:48506997-48507016 | None:intergenic | 45.0% | |
| GAGTGAAGAGATGCACAATC+CGG | + | chr7_4:48507242-48507261 | Msa1159020:CDS | 45.0% | |
| ! | AGGTTCCCAATCCTTTTGGT+TGG | + | chr7_4:48507394-48507413 | Msa1159020:intron | 45.0% |
| TCAGCAGAGAATAGCTGCTA+AGG | + | chr7_4:48507591-48507610 | Msa1159020:intron | 45.0% | |
| AATATGGCCAGCAAGCATCA+GGG | - | chr7_4:48507689-48507708 | None:intergenic | 45.0% | |
| AAATATGGCCAGCAAGCATC+AGG | - | chr7_4:48507690-48507709 | None:intergenic | 45.0% | |
| GAGCAACCTGCAAATCATAG+AGG | - | chr7_4:48507804-48507823 | None:intergenic | 45.0% | |
| GGTTGCTCTTTCTGTACTAC+TGG | + | chr7_4:48507816-48507835 | Msa1159020:intron | 45.0% | |
| CTTTAGGCTACTGGATTGTC+AGG | + | chr7_4:48507860-48507879 | Msa1159020:CDS | 45.0% | |
| TTTCACAAACTGAGCAACCC+CGG | - | chr7_4:48507923-48507942 | None:intergenic | 45.0% | |
| GGGTTGCTCAGTTTGTGAAA+TGG | + | chr7_4:48507923-48507942 | Msa1159020:CDS | 45.0% | |
| AAATGGGCAATGCGCGTTAT+TGG | + | chr7_4:48507940-48507959 | Msa1159020:CDS | 45.0% | |
| ! | ATTCTGAAAGTGGCGTAGCT+TGG | + | chr7_4:48508227-48508246 | Msa1159020:intron | 45.0% |
| AACAGCTCCACAAAAGACCA+AGG | - | chr7_4:48508396-48508415 | None:intergenic | 45.0% | |
| ! | CTTTGATGGGTCACGACAAA+AGG | - | chr7_4:48508823-48508842 | None:intergenic | 45.0% |
| !! | CTTTAGGAGGTGACTTGCTA+AGG | - | chr7_4:48508990-48509009 | None:intergenic | 45.0% |
| CTTAGCAAGTCACCTCCTAA+AGG | + | chr7_4:48508988-48509007 | Msa1159020:CDS | 45.0% | |
| !! | GTGGCTCTAAAGCAACAATG+TGG | + | chr7_4:48509034-48509053 | Msa1159020:CDS | 45.0% |
| ACAACCCTAAAAGGACGTCA+TGG | + | chr7_4:48509058-48509077 | Msa1159020:CDS | 45.0% | |
| ! | CAGACCATGACGTCCTTTTA+GGG | - | chr7_4:48509065-48509084 | None:intergenic | 45.0% |
| ! | TCAGACCATGACGTCCTTTT+AGG | - | chr7_4:48509066-48509085 | None:intergenic | 45.0% |
| TGGAAAGACATACCTCTCAC+AGG | - | chr7_4:48509093-48509112 | None:intergenic | 45.0% | |
| ! | GGTGTTGTATCACCATCTTC+TGG | + | chr7_4:48509760-48509779 | Msa1159020:intron | 45.0% |
| ! | GGTTTTCGCCACAAACTTCT+GGG | + | chr7_4:48509782-48509801 | Msa1159020:CDS | 45.0% |
| CATCTCCAGAATTCACTGAC+TGG | + | chr7_4:48509929-48509948 | Msa1159020:CDS | 45.0% | |
| ACGATCCAGTCAGTGAATTC+TGG | - | chr7_4:48509937-48509956 | None:intergenic | 45.0% | |
| !! | GCAGTTTTATCCGATCTGCA+TGG | - | chr7_4:48509963-48509982 | None:intergenic | 45.0% |
| CGAGACAATGGAGAGTGAAT+CGG | + | chr7_4:48510002-48510021 | Msa1159020:CDS | 45.0% | |
| GTTGGCGAGTGAAGAAGTGA+AGG | - | chr7_4:48505594-48505613 | None:intergenic | 50.0% | |
| GTTGATCTTCCTTTGTGGGC+TGG | + | chr7_4:48505927-48505946 | Msa1159020:intron | 50.0% | |
| TTGGGGCAGTCTGATACTCA+AGG | + | chr7_4:48506230-48506249 | Msa1159020:CDS | 50.0% | |
| ! | TGTGAGCGCGTTCAAGTTTC+TGG | + | chr7_4:48506272-48506291 | Msa1159020:CDS | 50.0% |
| AACACCTTCCTATCGGCATC+TGG | + | chr7_4:48506416-48506435 | Msa1159020:intron | 50.0% | |
| ACACCTTCCTATCGGCATCT+GGG | + | chr7_4:48506417-48506436 | Msa1159020:intron | 50.0% | |
| ! | ACTGGAGGGGTGTACAGAAA+GGG | + | chr7_4:48506543-48506562 | Msa1159020:CDS | 50.0% |
| GGGGTGTACAGAAAGGGATT+TGG | + | chr7_4:48506549-48506568 | Msa1159020:CDS | 50.0% | |
| !! | CGCCTCATTAGTCTTGCAGT+TGG | + | chr7_4:48506787-48506806 | Msa1159020:CDS | 50.0% |
| GCATCACAGTCGGAAGAAAC+TGG | - | chr7_4:48506987-48507006 | None:intergenic | 50.0% | |
| GTTTCTTCCGACTGTGATGC+AGG | + | chr7_4:48506987-48507006 | Msa1159020:intron | 50.0% | |
| AGCAGCTATTCTCTGCTGAC+TGG | - | chr7_4:48507590-48507609 | None:intergenic | 50.0% | |
| GCAGAGAATAGCTGCTAAGG+TGG | + | chr7_4:48507594-48507613 | Msa1159020:intron | 50.0% | |
| GCCATATTTGCTTGTCCGCT+AGG | + | chr7_4:48507701-48507720 | Msa1159020:intron | 50.0% | |
| ! | GCCTAGCGGACAAGCAAATA+TGG | - | chr7_4:48507705-48507724 | None:intergenic | 50.0% |
| CTACTGGGTATCATCTTGGC+TGG | + | chr7_4:48507832-48507851 | Msa1159020:CDS | 50.0% | |
| ! | ATCTTGGCTGGAGCTGCTTT+AGG | + | chr7_4:48507844-48507863 | Msa1159020:CDS | 50.0% |
| GAAGATGGCAGTGTAGATGC+CGG | + | chr7_4:48507901-48507920 | Msa1159020:CDS | 50.0% | |
| AAGATGGCAGTGTAGATGCC+GGG | + | chr7_4:48507902-48507921 | Msa1159020:CDS | 50.0% | |
| TACTCTTGCAGTTGGAGCCT+TGG | + | chr7_4:48508376-48508395 | Msa1159020:CDS | 50.0% | |
| !! | GTTGGAGCCTTGGTCTTTTG+TGG | + | chr7_4:48508386-48508405 | Msa1159020:CDS | 50.0% |
| GATTTCTTGACCTCTGGGTC+TGG | + | chr7_4:48509545-48509564 | Msa1159020:intron | 50.0% | |
| TGTGGCGAAAACCCAGAAGA+TGG | - | chr7_4:48509775-48509794 | None:intergenic | 50.0% | |
| ! | GGGTTTTCGCCACAAACTTC+TGG | + | chr7_4:48509781-48509800 | Msa1159020:CDS | 50.0% |
| TCTTTCTGTTGCCGGTCTTG+TGG | - | chr7_4:48509840-48509859 | None:intergenic | 50.0% | |
| GGATCGTTGACCATGCAGAT+CGG | + | chr7_4:48509950-48509969 | Msa1159020:CDS | 50.0% | |
| GAGTGAATCGGATTCCACAG+AGG | + | chr7_4:48510014-48510033 | Msa1159020:CDS | 50.0% | |
| ATTTCCACTTCCTGCCTCTG+TGG | - | chr7_4:48510031-48510050 | None:intergenic | 50.0% | |
| ACAGAGGCAGGAAGTGGAAA+TGG | + | chr7_4:48510030-48510049 | Msa1159020:CDS | 50.0% | |
| AGTGGGTGCGTTACAACTGC+AGG | + | chr7_4:48506161-48506180 | Msa1159020:intron | 55.0% | |
| GTATGCTCCCAGATGCCGAT+AGG | - | chr7_4:48506427-48506446 | None:intergenic | 55.0% | |
| ! | GACTGGAGGGGTGTACAGAA+AGG | + | chr7_4:48506542-48506561 | Msa1159020:CDS | 55.0% |
| ACATGTGCCCTGATGCTTGC+TGG | + | chr7_4:48507679-48507698 | Msa1159020:intron | 55.0% | |
| ! | CTGGAGCTGCTTTAGGCTAC+TGG | + | chr7_4:48507851-48507870 | Msa1159020:CDS | 55.0% |
| AGATGGCAGTGTAGATGCCG+GGG | + | chr7_4:48507903-48507922 | Msa1159020:CDS | 55.0% | |
| TAAGGAATTCCGCCCGACCA+CGG | - | chr7_4:48508972-48508991 | None:intergenic | 55.0% | |
| TGGTCTGACTCTCCTGTGAG+AGG | + | chr7_4:48509078-48509097 | Msa1159020:CDS | 55.0% | |
| ACTGCTTCCGAGCGAGAGTT+CGG | + | chr7_4:48509978-48509997 | Msa1159020:CDS | 55.0% | |
| CGAGAGTTCGGACGAGACAA+TGG | + | chr7_4:48509990-48510009 | Msa1159020:CDS | 55.0% | |
| GAATCGGATTCCACAGAGGC+AGG | + | chr7_4:48510018-48510037 | Msa1159020:CDS | 55.0% | |
| GATTCCACAGAGGCAGGAAG+TGG | + | chr7_4:48510024-48510043 | Msa1159020:CDS | 55.0% | |
| TCGCAGTTCCCAGCCCACAA+AGG | - | chr7_4:48505939-48505958 | None:intergenic | 60.0% | |
| GCTCCCAGATGCCGATAGGA+AGG | - | chr7_4:48506423-48506442 | None:intergenic | 60.0% | |
| GAATGGGTGAGAGGAACCCG+TGG | + | chr7_4:48508952-48508971 | Msa1159020:CDS | 60.0% | |
| AAGGAATTCCGCCCGACCAC+GGG | - | chr7_4:48508971-48508990 | None:intergenic | 60.0% | |
| ! | TGACCTCTGGGTCTGGCTTG+TGG | + | chr7_4:48509552-48509571 | Msa1159020:intron | 60.0% |
| TCACCACAAGCCAGACCCAG+AGG | - | chr7_4:48509558-48509577 | None:intergenic | 60.0% | |
| GTCTCGTCCGAACTCTCGCT+CGG | - | chr7_4:48509988-48510007 | None:intergenic | 60.0% | |
| GGGTGAGAGGAACCCGTGGT+CGG | + | chr7_4:48508956-48508975 | Msa1159020:CDS | 65.0% | |
| GGTGAGAGGAACCCGTGGTC+GGG | + | chr7_4:48508957-48508976 | Msa1159020:CDS | 65.0% | |
| GAGAGGAACCCGTGGTCGGG+CGG | + | chr7_4:48508960-48508979 | Msa1159020:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 48505425 | 48510291 | 48505425 | ID=Msa1159020;Name=Msa1159020 |
| chr7_4 | mRNA | 48505425 | 48510291 | 48505425 | ID=Msa1159020-mRNA-1;Parent=Msa1159020;Name=Msa1159020-mRNA-1;_AED=0.17;_eAED=0.17;_QI=54|1|1|1|1|1|10|217|533 |
| chr7_4 | exon | 48505425 | 48505644 | 48505425 | ID=Msa1159020-mRNA-1:exon:13147;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48506183 | 48506405 | 48506183 | ID=Msa1159020-mRNA-1:exon:13148;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48506505 | 48506662 | 48506505 | ID=Msa1159020-mRNA-1:exon:13149;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48506773 | 48506918 | 48506773 | ID=Msa1159020-mRNA-1:exon:13150;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48507009 | 48507071 | 48507009 | ID=Msa1159020-mRNA-1:exon:13151;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48507171 | 48507263 | 48507171 | ID=Msa1159020-mRNA-1:exon:13152;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48507817 | 48507981 | 48507817 | ID=Msa1159020-mRNA-1:exon:13153;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48508362 | 48508453 | 48508362 | ID=Msa1159020-mRNA-1:exon:13154;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48508918 | 48509099 | 48508918 | ID=Msa1159020-mRNA-1:exon:13155;Parent=Msa1159020-mRNA-1 |
| chr7_4 | exon | 48509761 | 48510291 | 48509761 | ID=Msa1159020-mRNA-1:exon:13156;Parent=Msa1159020-mRNA-1 |
| chr7_4 | five_prime_UTR | 48505425 | 48505478 | 48505425 | ID=Msa1159020-mRNA-1:five_prime_utr;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48505479 | 48505644 | 48505479 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48506183 | 48506405 | 48506183 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48506505 | 48506662 | 48506505 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48506773 | 48506918 | 48506773 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48507009 | 48507071 | 48507009 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48507171 | 48507263 | 48507171 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48507817 | 48507981 | 48507817 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48508362 | 48508453 | 48508362 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48508918 | 48509099 | 48508918 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | CDS | 48509761 | 48510074 | 48509761 | ID=Msa1159020-mRNA-1:cds;Parent=Msa1159020-mRNA-1 |
| chr7_4 | three_prime_UTR | 48510075 | 48510291 | 48510075 | ID=Msa1159020-mRNA-1:three_prime_utr;Parent=Msa1159020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
