AlfalfaGEDB | Msa0163510

M. sativa cultivar zhongmu-4 / Msa0163510

KEGG: -
GO: -
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163510	XP_013467977.1	99.468	376	2	0	1	376	1	376	0.0	779

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163510	sp\|Q9FVS1\|FBK23_ARATH	44.706	340	179	5	36	371	13	347	1.28e-97	297

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163510	I3SWK4	99.468	376	2	0	1	376	1	376	0.0	779

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0163510	0.810245	1.268541e-50	-8.615850e-47
Msa0000910	Msa0163510	0.871884	4.861451e-67	-8.615850e-47
Msa0011840	Msa0163510	0.814742	1.319648e-51	-8.615850e-47
Msa0017390	Msa0163510	0.809525	1.812724e-50	-8.615850e-47
Msa0017730	Msa0163510	0.802711	4.927782e-49	-8.615850e-47
Msa0020390	Msa0163510	0.821803	3.325000e-53	-8.615850e-47
Msa0024400	Msa0163510	0.982098	3.167269e-154	-8.615850e-47
Msa0026780	Msa0163510	0.801331	9.471110e-49	-8.615850e-47
Msa0027890	Msa0163510	0.829497	4.979031e-55	-8.615850e-47
Msa0032470	Msa0163510	0.821359	4.211504e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163510	MtrunA17_Chr1g0178491	99.468	376	2	0	1	376	1	376	0.0	779
Msa0163510	MtrunA17_Chr7g0266441	64.187	363	119	6	19	374	17	375	5.23e-165	466
Msa0163510	MtrunA17_Chr7g0266431	64.737	190	65	2	185	373	2	190	3.40e-83	251
Msa0163510	MtrunA17_Chr7g0266421	67.857	84	27	0	19	102	13	96	5.07e-35	125
Msa0163510	MtrunA17_Chr2g0286361	32.195	205	114	7	114	306	4	195	3.25e-22	94.7
Msa0163510	MtrunA17_Chr2g0283611	28.070	171	114	4	34	198	13	180	1.01e-13	71.2
Msa0163510	MtrunA17_Chr3g0143621	21.574	343	207	11	36	327	24	355	6.93e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0163510	AT1G57790.1	44.706	340	179	5	36	371	13	347	1.30e-98	297
Msa0163510	AT3G56470.1	43.860	342	178	4	34	372	27	357	1.14e-95	290
Msa0163510	AT4G00893.1	42.700	363	194	7	17	371	26	382	2.94e-95	290
Msa0163510	AT4G12370.1	44.702	302	155	6	83	375	1	299	1.98e-81	251
Msa0163510	AT4G10660.1	42.997	307	160	5	70	364	9	312	4.31e-78	243
Msa0163510	AT1G49360.3	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0163510	AT1G49360.2	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0163510	AT1G49360.4	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0163510	AT1G49360.1	36.712	365	187	15	39	373	111	461	1.06e-62	208
Msa0163510	AT1G49360.5	36.712	365	187	15	39	373	88	438	1.07e-62	207

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Find 112 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAGACATAAAATGAA+AGG	0.578262	1_4:+41749439	None:intergenic
AAATTCTCTGGGCATTTGGG+TGG	0.572307	1_4:+41752104	None:intergenic
AAATTTATGACCGAGCAAGA+GGG	0.650243	1_4:-41752056	Msa0163510:CDS
AAGAATACTAATGTTTGATT+TGG	0.320130	1_4:+41749269	None:intergenic
AAGCACCACTTCACTATGCA+TGG	0.542673	1_4:+41749570	None:intergenic
AAGGCAGCATCTTTACGGGC+GGG	0.561507	1_4:-41749697	Msa0163510:three_prime_UTR
AATAAGCTTGTGTTCTGTAA+TGG	0.484684	1_4:-41752209	Msa0163510:CDS
AATACACAGTCAGGTGATGT+TGG	0.549189	1_4:+41752350	None:intergenic
AATACATCAACCATGGTGAT+TGG	0.465857	1_4:+41752603	None:intergenic
AATAGGTCCTCCGCTGCACA+GGG	0.610369	1_4:+41752546	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTGCATTAGGGTTTA+TGG	-	chr1_4:41749592-41749611	Msa0163510:three_prime_UTR	30.0%
AAACCAAGCTCATTAATTGA+TGG	-	chr1_4:41749849-41749868	Msa0163510:intron	30.0%
AACCAAGCTCATTAATTGAT+GGG	-	chr1_4:41749850-41749869	Msa0163510:intron	30.0%
AATGCTCTTAAAATGCAACA+AGG	+	chr1_4:41750060-41750079	None:intergenic	30.0%
AGAGGTGGAAAATGATAATT+TGG	-	chr1_4:41750168-41750187	Msa0163510:intron	30.0%
TCATTTCTAATAGTTCAGCA+GGG	+	chr1_4:41750216-41750235	None:intergenic	30.0%
ATCATTTCTAATAGTTCAGC+AGG	+	chr1_4:41750217-41750236	None:intergenic	30.0%
TTTGGAAAATACATCAACCA+TGG	+	chr1_4:41750337-41750356	None:intergenic	30.0%
TTTGTTACACAAAAGATGGT+TGG	-	chr1_4:41750440-41750459	Msa0163510:intron	30.0%
AATAAGCTTGTGTTCTGTAA+TGG	-	chr1_4:41750721-41750740	Msa0163510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	41749239	41753713	41749239	ID=Msa0163510;Name=Msa0163510
chr1_4	mRNA	41749239	41753713	41749239	ID=Msa0163510-mRNA-1;Parent=Msa0163510;Name=Msa0163510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97\|1\|1\|1\|0.5\|0.33\|3\|595\|376
chr1_4	exon	41749239	41749784	41749239	ID=Msa0163510-mRNA-1:exon:12075;Parent=Msa0163510-mRNA-1
chr1_4	exon	41751676	41752823	41751676	ID=Msa0163510-mRNA-1:exon:12074;Parent=Msa0163510-mRNA-1
chr1_4	exon	41753585	41753713	41753585	ID=Msa0163510-mRNA-1:exon:12073;Parent=Msa0163510-mRNA-1
chr1_4	five_prime_UTR	41753617	41753713	41753617	ID=Msa0163510-mRNA-1:five_prime_utr;Parent=Msa0163510-mRNA-1
chr1_4	CDS	41753585	41753616	41753585	ID=Msa0163510-mRNA-1:cds;Parent=Msa0163510-mRNA-1
chr1_4	CDS	41751725	41752823	41751725	ID=Msa0163510-mRNA-1:cds;Parent=Msa0163510-mRNA-1
chr1_4	three_prime_UTR	41751676	41751724	41751676	ID=Msa0163510-mRNA-1:three_prime_utr;Parent=Msa0163510-mRNA-1
chr1_4	three_prime_UTR	41749239	41749784	41749239	ID=Msa0163510-mRNA-1:three_prime_utr;Parent=Msa0163510-mRNA-1

Gene Sequence

>Msa0163510

ATGTCAGGCAAAAAGAGAAGAAAATTGAAATTGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAAAATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAAATTGGTGGAAGGGGAAATTTATGACCGAGCAAGAGGGAGATGTTATAGTAATGTACACATGTTCTAGTGAAAACCCTATTATTTTCAAGTTAGACCAGGCCTCAATGGAATGGGAAGAGCTAAAAACACTAGATGGAGCAACTCTATTTGCTAGTTTCTTGTCTTCTCATTCAAGGACTGACCTCCTTGGAAATATGAGGAACAGTATCTACTTCTCTAAAGTTCGTTTTTATGGAAAGCGTTGCATATCATTCTCTCTTGATGACTATCGCTACTATCCTCGTAAGCAGTGGCATGACTGGGGTGAACAAGACCCTTTTGAAAGCATATGGATTGAACCACCAAAGGATTTTTCTGGATTCTCATGA

Protein sequence

>Msa0163510

MSGKKRRKLKLLSDTIAKSRREATEVENDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKNWWKGKFMTEQEGDVIVMYTCSSENPIIFKLDQASMEWEELKTLDGATLFASFLSSHSRTDLLGNMRNSIYFSKVRFYGKRCISFSLDDYRYYPRKQWHDWGEQDPFESIWIEPPKDFSGFS*