AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163510 MtrunA17_Chr1g0178491 99.468 376 2 0 1 376 1 376 0.0 779
Msa0163510 MtrunA17_Chr7g0266441 64.187 363 119 6 19 374 17 375 5.23e-165 466
Msa0163510 MtrunA17_Chr7g0266431 64.737 190 65 2 185 373 2 190 3.40e-83 251
Msa0163510 MtrunA17_Chr7g0266421 67.857 84 27 0 19 102 13 96 5.07e-35 125
Msa0163510 MtrunA17_Chr2g0286361 32.195 205 114 7 114 306 4 195 3.25e-22 94.7
Msa0163510 MtrunA17_Chr2g0283611 28.070 171 114 4 34 198 13 180 1.01e-13 71.2
Msa0163510 MtrunA17_Chr3g0143621 21.574 343 207 11 36 327 24 355 6.93e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163510 AT1G57790.1 44.706 340 179 5 36 371 13 347 1.30e-98 297
Msa0163510 AT3G56470.1 43.860 342 178 4 34 372 27 357 1.14e-95 290
Msa0163510 AT4G00893.1 42.700 363 194 7 17 371 26 382 2.94e-95 290
Msa0163510 AT4G12370.1 44.702 302 155 6 83 375 1 299 1.98e-81 251
Msa0163510 AT4G10660.1 42.997 307 160 5 70 364 9 312 4.31e-78 243
Msa0163510 AT1G49360.3 36.712 365 187 15 39 373 8 358 3.24e-63 207
Msa0163510 AT1G49360.2 36.712 365 187 15 39 373 8 358 3.24e-63 207
Msa0163510 AT1G49360.4 36.712 365 187 15 39 373 8 358 3.24e-63 207
Msa0163510 AT1G49360.1 36.712 365 187 15 39 373 111 461 1.06e-62 208
Msa0163510 AT1G49360.5 36.712 365 187 15 39 373 88 438 1.07e-62 207
Msa0163510 AT3G18720.1 36.390 349 182 11 39 371 52 376 1.27e-56 190
Msa0163510 AT4G10695.2 40.265 226 131 2 48 269 1 226 8.69e-55 180
Msa0163510 AT4G10695.1 40.265 226 131 2 48 269 1 226 8.69e-55 180
Msa0163510 AT4G12382.1 47.619 126 66 0 35 160 9 134 2.60e-39 137
Msa0163510 AT4G12382.2 47.619 126 66 0 35 160 9 134 2.60e-39 137
Msa0163510 AT4G10700.1 47.934 121 56 2 255 369 119 238 1.42e-28 112
Msa0163510 AT4G10700.1 43.373 83 47 0 69 151 8 90 3.60e-20 89.4
Msa0163510 AT2G44735.1 43.396 159 79 7 136 287 110 264 4.38e-28 113
Msa0163510 AT4G22035.1 32.800 125 79 3 35 155 12 135 1.82e-11 63.9
Msa0163510 AT4G22660.1 31.783 129 72 3 34 150 8 132 6.45e-11 63.9

Find 112 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTACACATTACTGATTT+TGG 0.040084 1_4:+41751675 None:intergenic
TCATACCACTGACCAAATTT+TGG 0.144092 1_4:+41752578 None:intergenic
AGCTTTGTTGACATTTAATT+TGG 0.199386 1_4:-41749498 Msa0163510:three_prime_UTR
TGGTCTAACTTGAAAATAAT+AGG 0.240703 1_4:+41751996 None:intergenic
AGAGGTGGAAAATGATAATT+TGG 0.262706 1_4:-41752762 Msa0163510:CDS
TTGATAGTCTCCCGAGTAAA+AGG 0.263964 1_4:+41752422 None:intergenic
CATATCTCGTTTAGCCTTAG+AGG 0.269854 1_4:-41752693 Msa0163510:CDS
ATGTTTGATTTGGTTATATA+GGG 0.278653 1_4:+41749279 None:intergenic
AGTTCCTAGTTATCTCTCTT+TGG 0.284498 1_4:-41749762 Msa0163510:three_prime_UTR
TGCCGAAGGCAGCATCTTTA+CGG 0.292948 1_4:-41749702 Msa0163510:three_prime_UTR
AATGTTTGATTTGGTTATAT+AGG 0.303054 1_4:+41749278 None:intergenic
TGACAAAAGGCAGACGGTTT+TGG 0.312961 1_4:+41752243 None:intergenic
AAGAATACTAATGTTTGATT+TGG 0.320130 1_4:+41749269 None:intergenic
GTTCATTAGTTAAGCTCATT+TGG 0.324864 1_4:-41749730 Msa0163510:three_prime_UTR
GTTTCTTGTCTTCTCATTCA+AGG 0.344326 1_4:-41751917 Msa0163510:CDS
GGTCTAACTTGAAAATAATA+GGG 0.354290 1_4:+41751997 None:intergenic
GGCTGCATAAATTTGATGTT+TGG 0.356014 1_4:-41749369 Msa0163510:three_prime_UTR
GCCGAAGGCAGCATCTTTAC+GGG 0.359572 1_4:-41749701 Msa0163510:three_prime_UTR
CTCGTAAGCAGTGGCATGAC+TGG 0.366506 1_4:-41751791 Msa0163510:CDS
AATCTATAGATTTATATAGA+TGG 0.384207 1_4:-41749469 Msa0163510:three_prime_UTR
TCAATCCATATGCTTTCAAA+AGG 0.390242 1_4:+41751756 None:intergenic
ATCATTTCTAATAGTTCAGC+AGG 0.392094 1_4:+41752716 None:intergenic
AGCACGGACATTGTCCTCTA+AGG 0.396495 1_4:+41752679 None:intergenic
ATTGAGTTTCCTGAGTTGAA+TGG 0.407380 1_4:-41752521 Msa0163510:CDS
GCCATCAGCACATGTCACCC+TGG 0.425844 1_4:-41752293 Msa0163510:CDS
GCCCGTAAAGATGCTGCCTT+CGG 0.427482 1_4:+41749700 None:intergenic
CACAAGAGAACGCAACTATC+TGG 0.427646 1_4:+41752375 None:intergenic
CTGAGTCTAACGGGTTGGCT+AGG 0.428305 1_4:-41752173 Msa0163510:CDS
AGAGTTTGTTACACAAAAGA+TGG 0.432818 1_4:-41752494 Msa0163510:CDS
GCTTATATATGCAGAACAAT+TGG 0.435526 1_4:-41749551 Msa0163510:three_prime_UTR
CAAGTTAGACCAGGCCTCAA+TGG 0.439625 1_4:-41751985 Msa0163510:CDS
GAATAGGTCCTCCGCTGCAC+AGG 0.439702 1_4:+41752545 None:intergenic
CTTCTGCGGTTTGCAAGAGT+TGG 0.446022 1_4:-41752658 Msa0163510:CDS
CTTCCCATTCCATTGAGGCC+TGG 0.447033 1_4:+41751976 None:intergenic
TGAGTCTAACGGGTTGGCTA+GGG 0.453281 1_4:-41752172 Msa0163510:CDS
CTCAGGAAACTCAATGGAAT+AGG 0.455431 1_4:+41752529 None:intergenic
TTCTCTGGGCATTTGGGTGG+AGG 0.456945 1_4:+41752107 None:intergenic
CATTCAAGGACTGACCTCCT+TGG 0.460684 1_4:-41751903 Msa0163510:CDS
AATACATCAACCATGGTGAT+TGG 0.465857 1_4:+41752603 None:intergenic
CATCAATTTCGCATAATGTC+AGG 0.471424 1_4:-41753609 Msa0163510:exon
TTGATCCATCTGAACGCACT+TGG 0.477811 1_4:-41752145 Msa0163510:CDS
TGGTATGTCATCTCAAATCT+TGG 0.481609 1_4:+41752395 None:intergenic
AATAAGCTTGTGTTCTGTAA+TGG 0.484684 1_4:-41752209 Msa0163510:CDS
GTGCTGATGGCCACAATAGT+AGG 0.487396 1_4:+41752305 None:intergenic
TTCCATATGCTACTGACAAA+AGG 0.491994 1_4:+41752230 None:intergenic
CCATCAGCACATGTCACCCT+GGG 0.492069 1_4:-41752292 Msa0163510:CDS
CACACCAAAGAGAGATAACT+AGG 0.497508 1_4:+41749758 None:intergenic
AGACCAGGCCTCAATGGAAT+GGG 0.506121 1_4:-41751979 Msa0163510:CDS
CAGCAGAGACATGATAATCA+AGG 0.506814 1_4:+41749615 None:intergenic
ATGGTTGGTTACTGCTATAC+CGG 0.507693 1_4:-41752475 Msa0163510:CDS
TAGCTCTTCCCATTCCATTG+AGG 0.512554 1_4:+41751971 None:intergenic
GGAAAGTGTTTCAAAGAGAG+AGG 0.513058 1_4:+41753671 None:intergenic
CCCAGGGTGACATGTGCTGA+TGG 0.513422 1_4:+41752292 None:intergenic
GTTCACCATGCGTACAGCAT+TGG 0.515987 1_4:+41752625 None:intergenic
TCGTAAGCAGTGGCATGACT+GGG 0.517661 1_4:-41751790 Msa0163510:CDS
ATTCAACTCAGGAAACTCAA+TGG 0.520817 1_4:+41752523 None:intergenic
TAGACCAGGCCTCAATGGAA+TGG 0.520927 1_4:-41751980 Msa0163510:CDS
ACAGTGAACAATACACAGTC+AGG 0.522970 1_4:+41752341 None:intergenic
ATAATTTGGAGCTGCAAACA+TGG 0.524692 1_4:-41752748 Msa0163510:CDS
ACGCTCCAAGTGCGTTCAGA+TGG 0.530295 1_4:+41752140 None:intergenic
CTGACCTCCTTGGAAATATG+AGG 0.530915 1_4:-41751893 Msa0163510:CDS
CAATCCATATGCTTTCAAAA+GGG 0.538554 1_4:+41751757 None:intergenic
AAGCACCACTTCACTATGCA+TGG 0.542673 1_4:+41749570 None:intergenic
TTTGTTACACAAAAGATGGT+TGG 0.543077 1_4:-41752490 Msa0163510:CDS
TATAACATCTCCCTCTTGCT+CGG 0.543615 1_4:+41752046 None:intergenic
GTGACCCACTCAGTTGCCCC+AGG 0.548400 1_4:+41752275 None:intergenic
AATACACAGTCAGGTGATGT+TGG 0.549189 1_4:+41752350 None:intergenic
CAGAAGAGAAGCAACAGAGG+TGG 0.554810 1_4:-41752777 Msa0163510:CDS
ATTGCCTGAGTCTAACGGGT+TGG 0.555672 1_4:-41752178 Msa0163510:CDS
GCATGTTAGTCCTACTATTG+TGG 0.555933 1_4:-41752315 Msa0163510:CDS
TACTGTTCCTCATATTTCCA+AGG 0.557830 1_4:+41751886 None:intergenic
AAGGCAGCATCTTTACGGGC+GGG 0.561507 1_4:-41749697 Msa0163510:three_prime_UTR
AAATTCTCTGGGCATTTGGG+TGG 0.572307 1_4:+41752104 None:intergenic
AAACCCAGACATAAAATGAA+AGG 0.578262 1_4:+41749439 None:intergenic
ACACTCGATCAGTTCTTGGC+CGG 0.582893 1_4:+41752456 None:intergenic
GAAATTTATGACCGAGCAAG+AGG 0.585940 1_4:-41752057 Msa0163510:CDS
TCACCCTGGGGCAACTGAGT+GGG 0.589444 1_4:-41752279 Msa0163510:CDS
CCCAGACATAAAATGAAAGG+TGG 0.594347 1_4:+41749442 None:intergenic
CAGTCATGCCACTGCTTACG+AGG 0.597324 1_4:+41751792 None:intergenic
CTCATTTGGAAGCATGCCGA+AGG 0.599268 1_4:-41749716 Msa0163510:three_prime_UTR
GTCACCCTGGGGCAACTGAG+TGG 0.599763 1_4:-41752280 Msa0163510:CDS
CTAGCCAACCCGTTAGACTC+AGG 0.605339 1_4:+41752174 None:intergenic
ACTCTAGATCCATTCAACTC+AGG 0.606054 1_4:+41752512 None:intergenic
TTAAGAAAGAGAGAACGAAG+TGG 0.607026 1_4:+41753650 None:intergenic
TTTGGAAAATACATCAACCA+TGG 0.609449 1_4:+41752596 None:intergenic
AATAGGTCCTCCGCTGCACA+GGG 0.610369 1_4:+41752546 None:intergenic
CCAAAATCAGTAATGTGTAG+AGG 0.611064 1_4:-41751675 Msa0163510:intron
TGAATCTGATGCTAAAGACT+AGG 0.611228 1_4:-41749640 Msa0163510:three_prime_UTR
CATATGGATTGAACCACCAA+AGG 0.612060 1_4:-41751745 Msa0163510:CDS
TCTTGCAAACCGCAGAAGCA+CGG 0.620256 1_4:+41752663 None:intergenic
GAGTCTAACGGGTTGGCTAG+GGG 0.622563 1_4:-41752171 Msa0163510:CDS
TCTATGACCCTGTGCAGCGG+AGG 0.622795 1_4:-41752553 Msa0163510:CDS
GAAGGCAGCATCTTTACGGG+CGG 0.624480 1_4:-41749698 Msa0163510:three_prime_UTR
GAGCAGAAGAGAAGCAACAG+AGG 0.625517 1_4:-41752780 Msa0163510:CDS
AGCAGAGACATGATAATCAA+GGG 0.627265 1_4:+41749616 None:intergenic
AGGAGGCTACTTATATGTGA+AGG 0.630780 1_4:-41749666 Msa0163510:three_prime_UTR
GGACAATGTCCGTGCTTCTG+CGG 0.633574 1_4:-41752672 Msa0163510:CDS
TGCTACTGACAAAAGGCAGA+CGG 0.641521 1_4:+41752237 None:intergenic
TGACCCACTCAGTTGCCCCA+GGG 0.643613 1_4:+41752276 None:intergenic
AATTCTATGACCCTGTGCAG+CGG 0.644847 1_4:-41752556 Msa0163510:CDS
TGTTGCCAATGCTGTACGCA+TGG 0.644907 1_4:-41752630 Msa0163510:CDS
AAATTTATGACCGAGCAAGA+GGG 0.650243 1_4:-41752056 Msa0163510:CDS
AGGAGAGAAATGAAAGCACG+TGG 0.662325 1_4:+41753691 None:intergenic
GCTACTATCCTCGTAAGCAG+TGG 0.662398 1_4:-41751800 Msa0163510:CDS
ACGGGCGGGATGTACGTAGG+AGG 0.673229 1_4:-41749683 Msa0163510:three_prime_UTR
CGTAAGCAGTGGCATGACTG+GGG 0.674467 1_4:-41751789 Msa0163510:CDS
TTTACGGGCGGGATGTACGT+AGG 0.677649 1_4:-41749686 Msa0163510:three_prime_UTR
TGTTCCTCATATTTCCAAGG+AGG 0.678301 1_4:+41751889 None:intergenic
TAATTTGGAGCTGCAAACAT+GGG 0.684242 1_4:-41752747 Msa0163510:CDS
TCATTTCTAATAGTTCAGCA+GGG 0.696179 1_4:+41752717 None:intergenic
CATCAGCACATGTCACCCTG+GGG 0.702309 1_4:-41752291 Msa0163510:CDS
GCATGGTGAACCAATCACCA+TGG 0.715864 1_4:-41752613 Msa0163510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATTCACAAT+TGG - chr1_4:41749966-41749985 Msa0163510:intron 10.0%
!!! TTTTTTTTTTATTCACAATT+GGG - chr1_4:41749967-41749986 Msa0163510:intron 10.0%
!!! TTTTATTCTATTTCATTTTT+TGG - chr1_4:41753528-41753547 Msa0163510:intron 10.0%
!!! GAATTAAACTAAATTAGTTT+AGG - chr1_4:41749723-41749742 Msa0163510:three_prime_UTR 15.0%
!! AGATGTTACAAAAAAATATA+CGG + chr1_4:41751720-41751739 None:intergenic 15.0%
!! AATCTATAGATTTATATAGA+TGG - chr1_4:41753461-41753480 Msa0163510:intron 15.0%
!! TAAACTAAATGTGTGAAAAT+TGG - chr1_4:41749449-41749468 Msa0163510:three_prime_UTR 20.0%
!!! TGAAAATTGGTTTTTAATGT+TGG - chr1_4:41749462-41749481 Msa0163510:three_prime_UTR 20.0%
!!! TTGATGTATTTTCCAAAATT+TGG - chr1_4:41750340-41750359 Msa0163510:intron 20.0%
!!! TTTTCTTTAATCCTTTTACT+CGG - chr1_4:41750497-41750516 Msa0163510:intron 20.0%
!!! AGAATTTTTTCGCAAAAAAT+TGG - chr1_4:41750842-41750861 Msa0163510:intron 20.0%
!!! AAGAATTTTAGTGAAACAAA+TGG - chr1_4:41751227-41751246 Msa0163510:intron 20.0%
!! TAACAAGAAGTTATAAAACA+AGG + chr1_4:41751305-41751324 None:intergenic 20.0%
!! TTATTCTTATGCTAAGTTAT+AGG - chr1_4:41751478-41751497 Msa0163510:intron 20.0%
!!! CATATTTCTGAGTTTAATTT+TGG + chr1_4:41751665-41751684 None:intergenic 20.0%
!!! TTCATTTACAACTCTAAAAA+AGG - chr1_4:41751686-41751705 Msa0163510:three_prime_UTR 20.0%
!! AATGCACAAACAATAATATT+TGG + chr1_4:41751931-41751950 None:intergenic 20.0%
!!! TTGATTTTACATGAATAATC+AGG - chr1_4:41752013-41752032 Msa0163510:CDS 20.0%
!! ATTGTTTAATGTGAAATGAA+TGG + chr1_4:41752102-41752121 None:intergenic 20.0%
!! AAAGAAGGAAAAATAACTAT+TGG - chr1_4:41752170-41752189 Msa0163510:CDS 20.0%
!! AAGAAGGAAAAATAACTATT+GGG - chr1_4:41752171-41752190 Msa0163510:CDS 20.0%
!! AAACTATAGGAGAAATTATT+AGG - chr1_4:41752358-41752377 Msa0163510:CDS 20.0%
!!! CTTAATGCATTTTGTAATTT+TGG - chr1_4:41752600-41752619 Msa0163510:CDS 20.0%
!!! ATTTAGCAGATTTTTAAAGT+TGG - chr1_4:41752915-41752934 Msa0163510:intron 20.0%
!!! ACTTATACCATTTTTTAACT+AGG - chr1_4:41753021-41753040 Msa0163510:intron 20.0%
!!! CTTATACCATTTTTTAACTA+GGG - chr1_4:41753022-41753041 Msa0163510:intron 20.0%
!!! ATGTTTGATTTGGTTATATA+GGG + chr1_4:41753654-41753673 None:intergenic 20.0%
!!! AATGTTTGATTTGGTTATAT+AGG + chr1_4:41753655-41753674 None:intergenic 20.0%
!! AAGAATACTAATGTTTGATT+TGG + chr1_4:41753664-41753683 None:intergenic 20.0%
!! TTTATCACATTGATTGCATT+AGG - chr1_4:41749584-41749603 Msa0163510:three_prime_UTR 25.0%
!! TTATCACATTGATTGCATTA+GGG - chr1_4:41749585-41749604 Msa0163510:three_prime_UTR 25.0%
!! ACATATGACTTTTACATGAT+TGG - chr1_4:41749779-41749798 Msa0163510:intron 25.0%
! GATAACATAACATAACAACT+AGG + chr1_4:41749938-41749957 None:intergenic 25.0%
! ACATGCATTTCTGATTATTT+AGG - chr1_4:41750107-41750126 Msa0163510:intron 25.0%
!! TTTCTTTAATCCTTTTACTC+GGG - chr1_4:41750498-41750517 Msa0163510:intron 25.0%
!! TTTTTGCGAAAAAATTCTCT+GGG + chr1_4:41750840-41750859 None:intergenic 25.0%
!!! TTTTTTGCGAAAAAATTCTC+TGG + chr1_4:41750841-41750860 None:intergenic 25.0%
!!! ATTTTTTCGCAAAAAATTGG+TGG - chr1_4:41750845-41750864 Msa0163510:intron 25.0%
! GGTCTAACTTGAAAATAATA+GGG + chr1_4:41750936-41750955 None:intergenic 25.0%
! TGGTCTAACTTGAAAATAAT+AGG + chr1_4:41750937-41750956 None:intergenic 25.0%
!!! TATTATTTTCAAGTTAGACC+AGG - chr1_4:41750936-41750955 Msa0163510:intron 25.0%
!!! TTCTCTAAAGTTCGTTTTTA+TGG - chr1_4:41751072-41751091 Msa0163510:intron 25.0%
! ATGCATAATAAGCTAGTATA+TGG - chr1_4:41751339-41751358 Msa0163510:intron 25.0%
!! TAACAGTTCATCAACATTTT+TGG - chr1_4:41751388-41751407 Msa0163510:intron 25.0%
! TGTCATCTCATTATAATAGT+TGG - chr1_4:41751552-41751571 Msa0163510:intron 25.0%
!! TACAAGAGCTTTTATGTAAA+AGG + chr1_4:41751794-41751813 None:intergenic 25.0%
! ATTTATTTAAGAGAGATGAC+TGG - chr1_4:41751962-41751981 Msa0163510:CDS 25.0%
! AGAAGGAAAAATAACTATTG+GGG - chr1_4:41752172-41752191 Msa0163510:CDS 25.0%
!!! TTTTCTTGTTGTACAAAAGA+TGG - chr1_4:41752231-41752250 Msa0163510:CDS 25.0%
! AATCTATACAGATCAAACAA+TGG + chr1_4:41752440-41752459 None:intergenic 25.0%
! AACTTACAATGTTAAGAAGA+AGG - chr1_4:41752537-41752556 Msa0163510:CDS 25.0%
!! ATAACAAAAACACAAGTTGA+CGG - chr1_4:41752560-41752579 Msa0163510:CDS 25.0%
! GAAGAAATTAACAATGACAA+GGG - chr1_4:41752622-41752641 Msa0163510:CDS 25.0%
!! ACTAGATTTACAAATTTGCT+AGG + chr1_4:41752691-41752710 None:intergenic 25.0%
! GTTAAACTCAAAGTATAAGT+TGG + chr1_4:41752744-41752763 None:intergenic 25.0%
!! ACTTATACTTTGAGTTTAAC+TGG - chr1_4:41752744-41752763 Msa0163510:CDS 25.0%
! AGAGGAAAATCTAAACAAAA+TGG + chr1_4:41752793-41752812 None:intergenic 25.0%
!! TTTTATTCTTTGTACATCAG+AGG + chr1_4:41752835-41752854 None:intergenic 25.0%
!!! AGCTTTGTTGACATTTAATT+TGG - chr1_4:41753432-41753451 Msa0163510:intron 25.0%
!!! TTCATTTTTTGGTACAAAAG+AGG - chr1_4:41753539-41753558 Msa0163510:intron 25.0%
!!! TCATTTTTTGGTACAAAAGA+GGG - chr1_4:41753540-41753559 Msa0163510:intron 25.0%
ATTGATTGCATTAGGGTTTA+TGG - chr1_4:41749592-41749611 Msa0163510:three_prime_UTR 30.0%
!! TTTTACATGATTGGTTGTGA+TGG - chr1_4:41749788-41749807 Msa0163510:intron 30.0%
AAACCAAGCTCATTAATTGA+TGG - chr1_4:41749849-41749868 Msa0163510:intron 30.0%
AACCAAGCTCATTAATTGAT+GGG - chr1_4:41749850-41749869 Msa0163510:intron 30.0%
! TTTTATTCACAATTGGGAAG+TGG - chr1_4:41749973-41749992 Msa0163510:intron 30.0%
AATGCTCTTAAAATGCAACA+AGG + chr1_4:41750060-41750079 None:intergenic 30.0%
AGAGGTGGAAAATGATAATT+TGG - chr1_4:41750168-41750187 Msa0163510:intron 30.0%
TCATTTCTAATAGTTCAGCA+GGG + chr1_4:41750216-41750235 None:intergenic 30.0%
ATCATTTCTAATAGTTCAGC+AGG + chr1_4:41750217-41750236 None:intergenic 30.0%
TTTGGAAAATACATCAACCA+TGG + chr1_4:41750337-41750356 None:intergenic 30.0%
! ATTTTCCAAAATTTGGTCAG+TGG - chr1_4:41750347-41750366 Msa0163510:intron 30.0%
!! AGAGTTTGTTACACAAAAGA+TGG - chr1_4:41750436-41750455 Msa0163510:intron 30.0%
TTTGTTACACAAAAGATGGT+TGG - chr1_4:41750440-41750459 Msa0163510:intron 30.0%
AATAAGCTTGTGTTCTGTAA+TGG - chr1_4:41750721-41750740 Msa0163510:intron 30.0%
AAAAAATTCTCTGGGCATTT+GGG + chr1_4:41750832-41750851 None:intergenic 30.0%
CAATCCATATGCTTTCAAAA+GGG + chr1_4:41751176-41751195 None:intergenic 30.0%
TCAATCCATATGCTTTCAAA+AGG + chr1_4:41751177-41751196 None:intergenic 30.0%
!! TAGAGGTATTTGTTATCACT+TGG - chr1_4:41751272-41751291 Msa0163510:intron 30.0%
ATAGTGTACAATAGTATGAG+TGG + chr1_4:41751517-41751536 None:intergenic 30.0%
GTTATGACCAAAACTGAAAT+GGG + chr1_4:41751743-41751762 None:intergenic 30.0%
AGTTATGACCAAAACTGAAA+TGG + chr1_4:41751744-41751763 None:intergenic 30.0%
!! GCTAGTCAGTATTTTTGAAA+TGG - chr1_4:41751817-41751836 Msa0163510:CDS 30.0%
!!! TCAGTATTTTTGAAATGGCT+TGG - chr1_4:41751822-41751841 Msa0163510:CDS 30.0%
TAATATTTGGCAGTTTAACC+TGG + chr1_4:41751918-41751937 None:intergenic 30.0%
AACCAAGAATAAGACATTCT+TGG + chr1_4:41752213-41752232 None:intergenic 30.0%
AGATGGTTTAATCTCAACTT+AGG - chr1_4:41752248-41752267 Msa0163510:CDS 30.0%
GACATGTAGATTCTATAGTA+TGG - chr1_4:41752293-41752312 Msa0163510:CDS 30.0%
GGAAAGGAAAGAAAAACTAT+AGG - chr1_4:41752345-41752364 Msa0163510:CDS 30.0%
AATTATTAGGAAAGACCTGA+AGG - chr1_4:41752371-41752390 Msa0163510:CDS 30.0%
TGTATAGATTATTCCACCTA+AGG - chr1_4:41752450-41752469 Msa0163510:CDS 30.0%
! TAACAAAAACACAAGTTGAC+GGG - chr1_4:41752561-41752580 Msa0163510:CDS 30.0%
TACAAAATGCATTAAGAGCT+CGG + chr1_4:41752596-41752615 None:intergenic 30.0%
GGAAGAAATTAACAATGACA+AGG - chr1_4:41752621-41752640 Msa0163510:CDS 30.0%
ACATTTAATATACGCCTTCT+AGG + chr1_4:41752657-41752676 None:intergenic 30.0%
!! AGATTTACAAATTTGCTAGG+TGG + chr1_4:41752688-41752707 None:intergenic 30.0%
CAAAATGGTGCAATTAATAG+TGG + chr1_4:41752778-41752797 None:intergenic 30.0%
TCAAGTCCCTAGTTAAAAAA+TGG + chr1_4:41753031-41753050 None:intergenic 30.0%
TAGTCAATCTATGAAACTCT+CGG - chr1_4:41753051-41753070 Msa0163510:intron 30.0%
GTTCATTAGTTAAGCTCATT+TGG - chr1_4:41753200-41753219 Msa0163510:intron 30.0%
GCTTATATATGCAGAACAAT+TGG - chr1_4:41753379-41753398 Msa0163510:intron 30.0%
AAACCCAGACATAAAATGAA+AGG + chr1_4:41753494-41753513 None:intergenic 30.0%
TTAAGAAAGAGAGAACGAAG+TGG + chr1_4:41749283-41749302 None:intergenic 35.0%
CATCAATTTCGCATAATGTC+AGG - chr1_4:41749321-41749340 Msa0163510:three_prime_UTR 35.0%
AATTGGGAAGTGGAAGAATA+TGG - chr1_4:41749983-41750002 Msa0163510:intron 35.0%
!!! GCATTTTAAGAGCATTCAAG+TGG - chr1_4:41750064-41750083 Msa0163510:intron 35.0%
! AGCATTCAAGTGGATTTGTT+CGG - chr1_4:41750074-41750093 Msa0163510:intron 35.0%
! ATAATTTGGAGCTGCAAACA+TGG - chr1_4:41750182-41750201 Msa0163510:intron 35.0%
! TAATTTGGAGCTGCAAACAT+GGG - chr1_4:41750183-41750202 Msa0163510:intron 35.0%
AATACATCAACCATGGTGAT+TGG + chr1_4:41750330-41750349 None:intergenic 35.0%
! TCATACCACTGACCAAATTT+TGG + chr1_4:41750355-41750374 None:intergenic 35.0%
ATTCAACTCAGGAAACTCAA+TGG + chr1_4:41750410-41750429 None:intergenic 35.0%
! ATTGAGTTTCCTGAGTTGAA+TGG - chr1_4:41750409-41750428 Msa0163510:intron 35.0%
AAAAACACTCGATCAGTTCT+TGG + chr1_4:41750481-41750500 None:intergenic 35.0%
TGGTATGTCATCTCAAATCT+TGG + chr1_4:41750538-41750557 None:intergenic 35.0%
TTCCATATGCTACTGACAAA+AGG + chr1_4:41750703-41750722 None:intergenic 35.0%
! CTTTTATTGCCTGAGTCTAA+CGG - chr1_4:41750747-41750766 Msa0163510:intron 35.0%
! TTTTATTGCCTGAGTCTAAC+GGG - chr1_4:41750748-41750767 Msa0163510:intron 35.0%
GAAAAAATTCTCTGGGCATT+TGG + chr1_4:41750833-41750852 None:intergenic 35.0%
TTTCGCAAAAAATTGGTGGA+AGG - chr1_4:41750849-41750868 Msa0163510:intron 35.0%
TTCGCAAAAAATTGGTGGAA+GGG - chr1_4:41750850-41750869 Msa0163510:intron 35.0%
AAATTTATGACCGAGCAAGA+GGG - chr1_4:41750874-41750893 Msa0163510:intron 35.0%
GAAGAGCTAAAAACACTAGA+TGG - chr1_4:41750973-41750992 Msa0163510:intron 35.0%
GTTTCTTGTCTTCTCATTCA+AGG - chr1_4:41751013-41751032 Msa0163510:intron 35.0%
TACTGTTCCTCATATTTCCA+AGG + chr1_4:41751047-41751066 None:intergenic 35.0%
!! AAGACCCTTTTGAAAGCATA+TGG - chr1_4:41751169-41751188 Msa0163510:intron 35.0%
AATCCAGAAAAATCCTTTGG+TGG + chr1_4:41751201-41751220 None:intergenic 35.0%
GAGAATCCAGAAAAATCCTT+TGG + chr1_4:41751204-41751223 None:intergenic 35.0%
!!! CCTCTACACATTACTGATTT+TGG + chr1_4:41751258-41751277 None:intergenic 35.0%
CCAAAATCAGTAATGTGTAG+AGG - chr1_4:41751255-41751274 Msa0163510:intron 35.0%
! AACATCTCCCATTTCAGTTT+TGG - chr1_4:41751733-41751752 Msa0163510:CDS 35.0%
!! AAGAGAGATGACTGGTTTAT+TGG - chr1_4:41751970-41751989 Msa0163510:CDS 35.0%
!! AGAGAGATGACTGGTTTATT+GGG - chr1_4:41751971-41751990 Msa0163510:CDS 35.0%
TCTGCCTAACTTTCTTAGTA+GGG - chr1_4:41752138-41752157 Msa0163510:CDS 35.0%
! AGCCAAGAATGTCTTATTCT+TGG - chr1_4:41752208-41752227 Msa0163510:CDS 35.0%
TGGTTTAATCTCAACTTAGG+TGG - chr1_4:41752251-41752270 Msa0163510:CDS 35.0%
TAATCTCAACTTAGGTGGTT+TGG - chr1_4:41752256-41752275 Msa0163510:CDS 35.0%
AATCTCAACTTAGGTGGTTT+GGG - chr1_4:41752257-41752276 Msa0163510:CDS 35.0%
GATTCTATAGTATGGAGACT+TGG - chr1_4:41752301-41752320 Msa0163510:CDS 35.0%
GAAATTAACAATGACAAGGG+AGG - chr1_4:41752625-41752644 Msa0163510:CDS 35.0%
! CTCAAAGTATAAGTTGGCTT+TGG + chr1_4:41752738-41752757 None:intergenic 35.0%
GTACTCAGTTAAATACTGAG+AGG + chr1_4:41752811-41752830 None:intergenic 35.0%
TAATGTGCCAACTTTGTGAT+TGG - chr1_4:41752947-41752966 Msa0163510:intron 35.0%
ATGGAATCCAATCACAAAGT+TGG + chr1_4:41752957-41752976 None:intergenic 35.0%
AGTTCCTAGTTATCTCTCTT+TGG - chr1_4:41753168-41753187 Msa0163510:intron 35.0%
TGAATCTGATGCTAAAGACT+AGG - chr1_4:41753290-41753309 Msa0163510:intron 35.0%
AGCAGAGACATGATAATCAA+GGG + chr1_4:41753317-41753336 None:intergenic 35.0%
! TTTTTCCATGCATAGTGAAG+TGG - chr1_4:41753355-41753374 Msa0163510:intron 35.0%
! TCCACCTTTCATTTTATGTC+TGG - chr1_4:41753487-41753506 Msa0163510:intron 35.0%
! CCACCTTTCATTTTATGTCT+GGG - chr1_4:41753488-41753507 Msa0163510:intron 35.0%
GGCTGCATAAATTTGATGTT+TGG - chr1_4:41753561-41753580 Msa0163510:intron 35.0%
!! GGAAAGTGTTTCAAAGAGAG+AGG + chr1_4:41749262-41749281 None:intergenic 40.0%
TGTTGGATCTCTGTGTAGAA+TGG - chr1_4:41749479-41749498 Msa0163510:three_prime_UTR 40.0%
CACCCATCAATTAATGAGCT+TGG + chr1_4:41749855-41749874 None:intergenic 40.0%
!! CATATCTCGTTTAGCCTTAG+AGG - chr1_4:41750237-41750256 Msa0163510:intron 40.0%
CTCAGGAAACTCAATGGAAT+AGG + chr1_4:41750404-41750423 None:intergenic 40.0%
ACTCTAGATCCATTCAACTC+AGG + chr1_4:41750421-41750440 None:intergenic 40.0%
! ATGGTTGGTTACTGCTATAC+CGG - chr1_4:41750455-41750474 Msa0163510:intron 40.0%
! TTGATAGTCTCCCGAGTAAA+AGG + chr1_4:41750511-41750530 None:intergenic 40.0%
AATACACAGTCAGGTGATGT+TGG + chr1_4:41750583-41750602 None:intergenic 40.0%
ACAGTGAACAATACACAGTC+AGG + chr1_4:41750592-41750611 None:intergenic 40.0%
GCATGTTAGTCCTACTATTG+TGG - chr1_4:41750615-41750634 Msa0163510:intron 40.0%
! TGCCTTTTGTCAGTAGCATA+TGG - chr1_4:41750698-41750717 Msa0163510:intron 40.0%
TCGCAAAAAATTGGTGGAAG+GGG - chr1_4:41750851-41750870 Msa0163510:intron 40.0%
GAAATTTATGACCGAGCAAG+AGG - chr1_4:41750873-41750892 Msa0163510:intron 40.0%
TATAACATCTCCCTCTTGCT+CGG + chr1_4:41750887-41750906 None:intergenic 40.0%
TGTTCCTCATATTTCCAAGG+AGG + chr1_4:41751044-41751063 None:intergenic 40.0%
! CATATGGATTGAACCACCAA+AGG - chr1_4:41751185-41751204 Msa0163510:intron 40.0%
! GAACCACCAAAGGATTTTTC+TGG - chr1_4:41751195-41751214 Msa0163510:intron 40.0%
TGAATCCTAGATTACACTGC+AGG + chr1_4:41751450-41751469 None:intergenic 40.0%
TTTCCAAAGCCGATGATGAT+GGG + chr1_4:41751881-41751900 None:intergenic 40.0%
! TTTTCCAAAGCCGATGATGA+TGG + chr1_4:41751882-41751901 None:intergenic 40.0%
!! TCGGCTTTGGAAAAGAGAAA+AGG - chr1_4:41751888-41751907 Msa0163510:CDS 40.0%
!! CGGCTTTGGAAAAGAGAAAA+GGG - chr1_4:41751889-41751908 Msa0163510:CDS 40.0%
GAAAAGAGAAAAGGGATTCC+AGG - chr1_4:41751897-41751916 Msa0163510:CDS 40.0%
GTCTGCCTAACTTTCTTAGT+AGG - chr1_4:41752137-41752156 Msa0163510:CDS 40.0%
CCTAACTTTCTTAGTAGGGA+GGG - chr1_4:41752142-41752161 Msa0163510:CDS 40.0%
CTAACTTTCTTAGTAGGGAG+GGG - chr1_4:41752143-41752162 Msa0163510:CDS 40.0%
!! GACTTGGAGAGAGTATTAGA+TGG - chr1_4:41752317-41752336 Msa0163510:CDS 40.0%
!! TTGGAGAGAGTATTAGATGG+AGG - chr1_4:41752320-41752339 Msa0163510:CDS 40.0%
!! TGGAGAGAGTATTAGATGGA+GGG - chr1_4:41752321-41752340 Msa0163510:CDS 40.0%
CATCAAAACCATTGACCTTC+AGG + chr1_4:41752389-41752408 None:intergenic 40.0%
AGATTATTCCACCTAAGGCT+TGG - chr1_4:41752455-41752474 Msa0163510:CDS 40.0%
!! TGCTGCCTGCTTTTCTTTTT+TGG - chr1_4:41752488-41752507 Msa0163510:CDS 40.0%
!! GCTGCCTGCTTTTCTTTTTT+GGG - chr1_4:41752489-41752508 Msa0163510:CDS 40.0%
CTCTCCCAAAAAAGAAAAGC+AGG + chr1_4:41752496-41752515 None:intergenic 40.0%
!!! TTCTTTTTTGGGAGAGAGAG+AGG - chr1_4:41752500-41752519 Msa0163510:CDS 40.0%
TTTGGTTACACGACAAAGTC+AGG + chr1_4:41752720-41752739 None:intergenic 40.0%
TTCTGAGTAGTCAGAATTGC+TGG + chr1_4:41752864-41752883 None:intergenic 40.0%
GACTACTCAGAAAACCTTGT+TGG - chr1_4:41752872-41752891 Msa0163510:intron 40.0%
! AGCACTGTTTAGTTCCAACA+AGG + chr1_4:41752889-41752908 None:intergenic 40.0%
CAATCTATGAAACTCTCGGT+TGG - chr1_4:41753055-41753074 Msa0163510:intron 40.0%
CACACCAAAGAGAGATAACT+AGG + chr1_4:41753175-41753194 None:intergenic 40.0%
AGGAGGCTACTTATATGTGA+AGG - chr1_4:41753264-41753283 Msa0163510:intron 40.0%
CAGCAGAGACATGATAATCA+AGG + chr1_4:41753318-41753337 None:intergenic 40.0%
CCCAGACATAAAATGAAAGG+TGG + chr1_4:41753491-41753510 None:intergenic 40.0%
! AGGAGAGAAATGAAAGCACG+TGG + chr1_4:41749242-41749261 None:intergenic 45.0%
TGGATCTCTGTGTAGAATGG+TGG - chr1_4:41749482-41749501 Msa0163510:three_prime_UTR 45.0%
AATTCTATGACCCTGTGCAG+CGG - chr1_4:41750374-41750393 Msa0163510:intron 45.0%
CACAAGAGAACGCAACTATC+TGG + chr1_4:41750558-41750577 None:intergenic 45.0%
! TGACAAAAGGCAGACGGTTT+TGG + chr1_4:41750690-41750709 None:intergenic 45.0%
TGCTACTGACAAAAGGCAGA+CGG + chr1_4:41750696-41750715 None:intergenic 45.0%
TTGATCCATCTGAACGCACT+TGG - chr1_4:41750785-41750804 Msa0163510:intron 45.0%
!! ACGCACTTGGAGCGTTTTAT+CGG - chr1_4:41750798-41750817 Msa0163510:intron 45.0%
AAATTCTCTGGGCATTTGGG+TGG + chr1_4:41750829-41750848 None:intergenic 45.0%
TAGCTCTTCCCATTCCATTG+AGG + chr1_4:41750962-41750981 None:intergenic 45.0%
CTGACCTCCTTGGAAATATG+AGG - chr1_4:41751037-41751056 Msa0163510:intron 45.0%
TGCTACCTGCAGTGTAATCT+AGG - chr1_4:41751442-41751461 Msa0163510:intron 45.0%
CTAACCATGCCCATCATCAT+CGG - chr1_4:41751869-41751888 Msa0163510:CDS 45.0%
GCCTAACTTTCTTAGTAGGG+AGG - chr1_4:41752141-41752160 Msa0163510:CDS 45.0%
CCCTCCCTACTAAGAAAGTT+AGG + chr1_4:41752145-41752164 None:intergenic 45.0%
!! AGAGAGTATTAGATGGAGGG+TGG - chr1_4:41752324-41752343 Msa0163510:CDS 45.0%
GTATTAGATGGAGGGTGGAA+AGG - chr1_4:41752329-41752348 Msa0163510:CDS 45.0%
AGGAAAGACCTGAAGGTCAA+TGG - chr1_4:41752378-41752397 Msa0163510:CDS 45.0%
AAGGGAGGATAAAGCCTAGA+AGG - chr1_4:41752640-41752659 Msa0163510:CDS 45.0%
CCAGTTCAGCTGTAAAAGCA+TGG + chr1_4:41752976-41752995 None:intergenic 45.0%
! CCATGCTTTTACAGCTGAAC+TGG - chr1_4:41752973-41752992 Msa0163510:intron 45.0%
!! GGAACTCTGAAATTGCAGCA+TGG + chr1_4:41753154-41753173 None:intergenic 45.0%
AAGCACCACTTCACTATGCA+TGG + chr1_4:41753363-41753382 None:intergenic 45.0%
GAGCAGAAGAGAAGCAACAG+AGG - chr1_4:41750150-41750169 Msa0163510:intron 50.0%
CAGAAGAGAAGCAACAGAGG+TGG - chr1_4:41750153-41750172 Msa0163510:intron 50.0%
AGCACGGACATTGTCCTCTA+AGG + chr1_4:41750254-41750273 None:intergenic 50.0%
TCTTGCAAACCGCAGAAGCA+CGG + chr1_4:41750270-41750289 None:intergenic 50.0%
CTTCTGCGGTTTGCAAGAGT+TGG - chr1_4:41750272-41750291 Msa0163510:intron 50.0%
TGTTGCCAATGCTGTACGCA+TGG - chr1_4:41750300-41750319 Msa0163510:intron 50.0%
GTTCACCATGCGTACAGCAT+TGG + chr1_4:41750308-41750327 None:intergenic 50.0%
GCATGGTGAACCAATCACCA+TGG - chr1_4:41750317-41750336 Msa0163510:intron 50.0%
ACACTCGATCAGTTCTTGGC+CGG + chr1_4:41750477-41750496 None:intergenic 50.0%
! GTGCTGATGGCCACAATAGT+AGG + chr1_4:41750628-41750647 None:intergenic 50.0%
! ATTGCCTGAGTCTAACGGGT+TGG - chr1_4:41750752-41750771 Msa0163510:intron 50.0%
!! TGAGTCTAACGGGTTGGCTA+GGG - chr1_4:41750758-41750777 Msa0163510:intron 50.0%
CAAGTTAGACCAGGCCTCAA+TGG - chr1_4:41750945-41750964 Msa0163510:intron 50.0%
TAGACCAGGCCTCAATGGAA+TGG - chr1_4:41750950-41750969 Msa0163510:intron 50.0%
AGACCAGGCCTCAATGGAAT+GGG - chr1_4:41750951-41750970 Msa0163510:intron 50.0%
CATTCAAGGACTGACCTCCT+TGG - chr1_4:41751027-41751046 Msa0163510:intron 50.0%
GCTACTATCCTCGTAAGCAG+TGG - chr1_4:41751130-41751149 Msa0163510:intron 50.0%
TCGTAAGCAGTGGCATGACT+GGG - chr1_4:41751140-41751159 Msa0163510:intron 50.0%
!! AAAGCCGATGATGATGGGCA+TGG + chr1_4:41751876-41751895 None:intergenic 50.0%
!! ATGCCCATCATCATCGGCTT+TGG - chr1_4:41751875-41751894 Msa0163510:CDS 50.0%
GTAGGGAGGGGAAGAAAAGA+AGG - chr1_4:41752155-41752174 Msa0163510:CDS 50.0%
! TTAGGTGGTTTGGGCATCTG+TGG - chr1_4:41752266-41752285 Msa0163510:CDS 50.0%
GACAACAACCAAGCCTTAGG+TGG + chr1_4:41752466-41752485 None:intergenic 50.0%
AGCGACAACAACCAAGCCTT+AGG + chr1_4:41752469-41752488 None:intergenic 50.0%
!! TTTTGGGAGAGAGAGAGGAG+AGG - chr1_4:41752505-41752524 Msa0163510:CDS 50.0%
! AAAACACAAGTTGACGGGCC+AGG - chr1_4:41752566-41752585 Msa0163510:CDS 50.0%
! AAACACAAGTTGACGGGCCA+GGG - chr1_4:41752567-41752586 Msa0163510:CDS 50.0%
! CTCATTTGGAAGCATGCCGA+AGG - chr1_4:41753214-41753233 Msa0163510:intron 50.0%
TGCCGAAGGCAGCATCTTTA+CGG - chr1_4:41753228-41753247 Msa0163510:intron 50.0%
GGACAATGTCCGTGCTTCTG+CGG - chr1_4:41750258-41750277 Msa0163510:intron 55.0%
AATAGGTCCTCCGCTGCACA+GGG + chr1_4:41750387-41750406 None:intergenic 55.0%
CCATCAGCACATGTCACCCT+GGG - chr1_4:41750638-41750657 Msa0163510:intron 55.0%
CATCAGCACATGTCACCCTG+GGG - chr1_4:41750639-41750658 Msa0163510:intron 55.0%
CTAGCCAACCCGTTAGACTC+AGG + chr1_4:41750759-41750778 None:intergenic 55.0%
!! CTGAGTCTAACGGGTTGGCT+AGG - chr1_4:41750757-41750776 Msa0163510:intron 55.0%
!! GAGTCTAACGGGTTGGCTAG+GGG - chr1_4:41750759-41750778 Msa0163510:intron 55.0%
ACGCTCCAAGTGCGTTCAGA+TGG + chr1_4:41750793-41750812 None:intergenic 55.0%
TTCTCTGGGCATTTGGGTGG+AGG + chr1_4:41750826-41750845 None:intergenic 55.0%
CTTCCCATTCCATTGAGGCC+TGG + chr1_4:41750957-41750976 None:intergenic 55.0%
CAGTCATGCCACTGCTTACG+AGG + chr1_4:41751141-41751160 None:intergenic 55.0%
CTCGTAAGCAGTGGCATGAC+TGG - chr1_4:41751139-41751158 Msa0163510:intron 55.0%
CGTAAGCAGTGGCATGACTG+GGG - chr1_4:41751141-41751160 Msa0163510:intron 55.0%
CATTAAGAGCTCGGAAGCCC+TGG + chr1_4:41752587-41752606 None:intergenic 55.0%
GCCGAAGGCAGCATCTTTAC+GGG - chr1_4:41753229-41753248 Msa0163510:intron 55.0%
GCCCGTAAAGATGCTGCCTT+CGG + chr1_4:41753233-41753252 None:intergenic 55.0%
GAAGGCAGCATCTTTACGGG+CGG - chr1_4:41753232-41753251 Msa0163510:intron 55.0%
AAGGCAGCATCTTTACGGGC+GGG - chr1_4:41753233-41753252 Msa0163510:intron 55.0%
TTTACGGGCGGGATGTACGT+AGG - chr1_4:41753244-41753263 Msa0163510:intron 55.0%
TCTATGACCCTGTGCAGCGG+AGG - chr1_4:41750377-41750396 Msa0163510:intron 60.0%
GAATAGGTCCTCCGCTGCAC+AGG + chr1_4:41750388-41750407 None:intergenic 60.0%
GCCATCAGCACATGTCACCC+TGG - chr1_4:41750637-41750656 Msa0163510:intron 60.0%
CCCAGGGTGACATGTGCTGA+TGG + chr1_4:41750641-41750660 None:intergenic 60.0%
TCACCCTGGGGCAACTGAGT+GGG - chr1_4:41750651-41750670 Msa0163510:intron 60.0%
TGACCCACTCAGTTGCCCCA+GGG + chr1_4:41750657-41750676 None:intergenic 60.0%
TGGGAGAGAGAGAGGAGAGG+AGG - chr1_4:41752508-41752527 Msa0163510:CDS 60.0%
GGGAGAGAGAGAGGAGAGGA+GGG - chr1_4:41752509-41752528 Msa0163510:CDS 60.0%
GGAGAGAGAGAGGAGAGGAG+GGG - chr1_4:41752510-41752529 Msa0163510:CDS 60.0%
GAGAGAGAGAGGAGAGGAGG+GGG - chr1_4:41752511-41752530 Msa0163510:CDS 60.0%
GTCACCCTGGGGCAACTGAG+TGG - chr1_4:41750650-41750669 Msa0163510:intron 65.0%
GTGACCCACTCAGTTGCCCC+AGG + chr1_4:41750658-41750677 None:intergenic 65.0%
ACGGGCGGGATGTACGTAGG+AGG - chr1_4:41753247-41753266 Msa0163510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41749239 41753713 41749239 ID=Msa0163510;Name=Msa0163510
chr1_4 mRNA 41749239 41753713 41749239 ID=Msa0163510-mRNA-1;Parent=Msa0163510;Name=Msa0163510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97|1|1|1|0.5|0.33|3|595|376
chr1_4 exon 41749239 41749784 41749239 ID=Msa0163510-mRNA-1:exon:12075;Parent=Msa0163510-mRNA-1
chr1_4 exon 41751676 41752823 41751676 ID=Msa0163510-mRNA-1:exon:12074;Parent=Msa0163510-mRNA-1
chr1_4 exon 41753585 41753713 41753585 ID=Msa0163510-mRNA-1:exon:12073;Parent=Msa0163510-mRNA-1
chr1_4 five_prime_UTR 41753617 41753713 41753617 ID=Msa0163510-mRNA-1:five_prime_utr;Parent=Msa0163510-mRNA-1
chr1_4 CDS 41753585 41753616 41753585 ID=Msa0163510-mRNA-1:cds;Parent=Msa0163510-mRNA-1
chr1_4 CDS 41751725 41752823 41751725 ID=Msa0163510-mRNA-1:cds;Parent=Msa0163510-mRNA-1
chr1_4 three_prime_UTR 41751676 41751724 41751676 ID=Msa0163510-mRNA-1:three_prime_utr;Parent=Msa0163510-mRNA-1
chr1_4 three_prime_UTR 41749239 41749784 41749239 ID=Msa0163510-mRNA-1:three_prime_utr;Parent=Msa0163510-mRNA-1
Gene Sequence

>Msa0163510

ATGTCAGGCAAAAAGAGAAGAAAATTGAAATTGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAAAATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAAATTGGTGGAAGGGGAAATTTATGACCGAGCAAGAGGGAGATGTTATAGTAATGTACACATGTTCTAGTGAAAACCCTATTATTTTCAAGTTAGACCAGGCCTCAATGGAATGGGAAGAGCTAAAAACACTAGATGGAGCAACTCTATTTGCTAGTTTCTTGTCTTCTCATTCAAGGACTGACCTCCTTGGAAATATGAGGAACAGTATCTACTTCTCTAAAGTTCGTTTTTATGGAAAGCGTTGCATATCATTCTCTCTTGATGACTATCGCTACTATCCTCGTAAGCAGTGGCATGACTGGGGTGAACAAGACCCTTTTGAAAGCATATGGATTGAACCACCAAAGGATTTTTCTGGATTCTCATGA

Protein sequence

>Msa0163510

MSGKKRRKLKLLSDTIAKSRREATEVENDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKNWWKGKFMTEQEGDVIVMYTCSSENPIIFKLDQASMEWEELKTLDGATLFASFLSSHSRTDLLGNMRNSIYFSKVRFYGKRCISFSLDDYRYYPRKQWHDWGEQDPFESIWIEPPKDFSGFS*