Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340550 | XP_003624694.1 | 96.169 | 522 | 16 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340550 | Q2HVB6 | 96.169 | 522 | 16 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1022 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024400 | Msa1340550 | 0.813482 | 2.503215e-51 | -8.615850e-47 |
| Msa0028930 | Msa1340550 | 0.800934 | 1.141667e-48 | -8.615850e-47 |
| Msa0120280 | Msa1340550 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
| Msa0163510 | Msa1340550 | 0.820027 | 8.518252e-53 | -8.615850e-47 |
| Msa0185280 | Msa1340550 | 0.813380 | 2.635853e-51 | -8.615850e-47 |
| Msa0225620 | Msa1340550 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa1340550 | Msa1414820 | 0.808390 | 3.170964e-50 | -8.615850e-47 |
| Msa1340550 | Msa1420120 | 0.805876 | 1.080120e-49 | -8.615850e-47 |
| Msa1071050 | Msa1340550 | 0.937213 | 4.988674e-98 | -8.615850e-47 |
| Msa1118450 | Msa1340550 | 0.935132 | 1.371472e-96 | -8.615850e-47 |
| Msa1159020 | Msa1340550 | 0.969833 | 1.044053e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340550 | MtrunA17_Chr7g0253981 | 96.169 | 522 | 16 | 2 | 12 | 533 | 1 | 518 | 0.0 | 1022 |
| Msa1340550 | MtrunA17_Chr5g0401031 | 35.185 | 486 | 291 | 9 | 30 | 511 | 13 | 478 | 7.18e-76 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340550 | AT1G28760.1 | 51.685 | 445 | 178 | 11 | 86 | 520 | 49 | 466 | 7.74e-151 | 441 |
| Msa1340550 | AT5G67610.1 | 34.898 | 490 | 276 | 12 | 31 | 509 | 16 | 473 | 4.65e-78 | 254 |
| Msa1340550 | AT5G67610.2 | 35.575 | 461 | 260 | 10 | 60 | 509 | 51 | 485 | 4.09e-77 | 251 |
| Msa1340550 | AT3G49840.2 | 32.049 | 493 | 272 | 16 | 28 | 509 | 15 | 455 | 2.97e-64 | 216 |
| Msa1340550 | AT3G49840.1 | 31.846 | 493 | 272 | 15 | 28 | 509 | 15 | 454 | 4.89e-64 | 216 |
Find 123 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTCTGGGACTCAATT+AGG | 0.139513 | tig0004180:+31436 | Msa1340550:CDS |
| TGTATCTCCTTCCTTACTTT+TGG | 0.163842 | tig0004180:+27853 | Msa1340550:CDS |
| TGTGAGCGCGTTCAAGTTTC+TGG | 0.164433 | tig0004180:+27914 | Msa1340550:CDS |
| CAGGAAGTGGAAATGGATTT+TGG | 0.174652 | tig0004180:+31680 | Msa1340550:CDS |
| GGTGTTGTATCACCATCTTC+TGG | 0.180077 | tig0004180:+31403 | Msa1340550:intron |
| TTCCTGTACATTACCATATA+TGG | 0.198198 | tig0004180:+28684 | Msa1340550:CDS |
| TGTGAACTTCTTTCTGTTGC+CGG | 0.253295 | tig0004180:-31488 | None:intergenic |
| GAGATTGCATAACAAAATTA+AGG | 0.256111 | tig0004180:+28012 | Msa1340550:CDS |
| CTGGAGCTGCTTTAGGCTAC+TGG | 0.290809 | tig0004180:+29494 | Msa1340550:CDS |
| AAACTTCTGGGACTCAATTA+GGG | 0.296814 | tig0004180:+31437 | Msa1340550:CDS |
| ATTGAACTGCTATAATAAAA+TGG | 0.300837 | tig0004180:-28495 | None:intergenic |
| GGTTGCTCTTTCTGTACTAC+TGG | 0.305584 | tig0004180:+29459 | Msa1340550:intron |
| CAATGTGGAACAACCCTAAA+AGG | 0.312072 | tig0004180:+30692 | Msa1340550:CDS |
| AAATGGGCAATGCGCGTTAT+TGG | 0.321806 | tig0004180:+29583 | Msa1340550:CDS |
| ACGATCCAGTCAGTGAATTC+TGG | 0.325513 | tig0004180:-31577 | None:intergenic |
| GATTGTTCAGGCTTACAGTT+TGG | 0.335474 | tig0004180:-31873 | None:intergenic |
| GAACAATCATGTCAAATCTA+TGG | 0.349932 | tig0004180:+31888 | Msa1340550:three_prime_UTR |
| AACAGTAACGAATGTAATTT+AGG | 0.354262 | tig0004180:+31779 | Msa1340550:three_prime_UTR |
| TGTTTACCTTTGAGCGTGAT+AGG | 0.356191 | tig0004180:-27380 | None:intergenic |
| TGTACTACTGGGTATCATCT+TGG | 0.358173 | tig0004180:+29471 | Msa1340550:CDS |
| TAGATTTGACATGATTGTTC+AGG | 0.364828 | tig0004180:-31885 | None:intergenic |
| GTGTTGTATCACCATCTTCT+GGG | 0.371482 | tig0004180:+31404 | Msa1340550:CDS |
| ACTCACCACTGATCCATATA+TGG | 0.376935 | tig0004180:-28697 | None:intergenic |
| GGGGTGTACAGAAAGGGATT+TGG | 0.386641 | tig0004180:+28191 | Msa1340550:CDS |
| ATTCAATTCTTCAGAGTCTT+GGG | 0.388913 | tig0004180:+28859 | Msa1340550:CDS |
| TACTCTTGCAGTTGGAGCCT+TGG | 0.388943 | tig0004180:+30019 | Msa1340550:CDS |
| TATAGCAGTTCAATGGCTAT+AGG | 0.395624 | tig0004180:+28504 | Msa1340550:CDS |
| TAATTCATTGCATGTTACTT+TGG | 0.398470 | tig0004180:+27967 | Msa1340550:CDS |
| AATTTACGATCATAGAGAAT+TGG | 0.399637 | tig0004180:-28839 | None:intergenic |
| GGCTCCAATTGTTAGCAGTT+GGG | 0.402028 | tig0004180:+28470 | Msa1340550:CDS |
| AATTCAATTCTTCAGAGTCT+TGG | 0.407150 | tig0004180:+28858 | Msa1340550:CDS |
| GGGTTGCTCAGTTTGTGAAA+TGG | 0.409305 | tig0004180:+29566 | Msa1340550:CDS |
| CAAAGCAAGCTTTAGCTGAA+TGG | 0.415906 | tig0004180:+31545 | Msa1340550:CDS |
| ACAGAGGCAGGAAGTGGAAA+TGG | 0.422390 | tig0004180:+31673 | Msa1340550:CDS |
| TGGCTCCAATTGTTAGCAGT+TGG | 0.424714 | tig0004180:+28469 | Msa1340550:CDS |
| GGTTGCTCAGTTTGTGAAAT+GGG | 0.425437 | tig0004180:+29567 | Msa1340550:CDS |
| ACTGCTTCCGAGCGAGAGTT+CGG | 0.428570 | tig0004180:+31621 | Msa1340550:CDS |
| GGTGAGAGGAACCCGTGGTC+GGG | 0.430495 | tig0004180:+30600 | Msa1340550:CDS |
| CAATACAATTGCTTCATGAA+TGG | 0.432133 | tig0004180:+30075 | Msa1340550:CDS |
| ATGATGATTATTCACTAGAA+TGG | 0.434162 | tig0004180:+30578 | Msa1340550:CDS |
| AGGAGAAGATTGATCATTGT+TGG | 0.439643 | tig0004180:-27360 | None:intergenic |
| ATCTTGGCTGGAGCTGCTTT+AGG | 0.440307 | tig0004180:+29487 | Msa1340550:CDS |
| GGAACCCAACTGCTAACAAT+TGG | 0.440479 | tig0004180:-28474 | None:intergenic |
| AGAAGTTCACAAAGGAAGAA+TGG | 0.440891 | tig0004180:+31500 | Msa1340550:CDS |
| TTCAGCTAAAGCTTGCTTTG+TGG | 0.441989 | tig0004180:-31542 | None:intergenic |
| CTTTAGGCTACTGGATTGTC+AGG | 0.442622 | tig0004180:+29503 | Msa1340550:CDS |
| CAAGATCGATTGTGAAATAC+CGG | 0.445444 | tig0004180:+28255 | Msa1340550:CDS |
| GAAGTTCACAAAGGAAGAAT+GGG | 0.457343 | tig0004180:+31501 | Msa1340550:CDS |
| CTTTAGGAGGTGACTTGCTA+AGG | 0.458852 | tig0004180:-30630 | None:intergenic |
| AATTGAGTCCCAGAAGTTTG+TGG | 0.462194 | tig0004180:-31433 | None:intergenic |
| GTTACAGTTGCACTTAAAGA+AGG | 0.464576 | tig0004180:+28283 | Msa1340550:CDS |
| TGATATTGAAAGTCCAACTT+TGG | 0.466308 | tig0004180:+27829 | Msa1340550:CDS |
| CGCCTCATTAGTCTTGCAGT+TGG | 0.467974 | tig0004180:+28429 | Msa1340550:CDS |
| TCTTTCTGTTGCCGGTCTTG+TGG | 0.469024 | tig0004180:-31480 | None:intergenic |
| TCATAGAGAATTGGTGCAAA+AGG | 0.472297 | tig0004180:-28830 | None:intergenic |
| ATCAGACTGCCCCAAAAGTA+AGG | 0.473066 | tig0004180:-27864 | None:intergenic |
| AAAGCAAGCTTTAGCTGAAT+GGG | 0.473252 | tig0004180:+31546 | Msa1340550:CDS |
| CTTGATAATACTCTTGCAGT+TGG | 0.479961 | tig0004180:+30011 | Msa1340550:CDS |
| TTTGTTATTTCAAAAGAAGA+TGG | 0.483979 | tig0004180:+29529 | Msa1340550:CDS |
| TGATGATTATTCACTAGAAT+GGG | 0.484137 | tig0004180:+30579 | Msa1340550:CDS |
| GATATTGAAAGTCCAACTTT+GGG | 0.484800 | tig0004180:+27830 | Msa1340550:CDS |
| GAATCGGATTCCACAGAGGC+AGG | 0.485362 | tig0004180:+31661 | Msa1340550:CDS |
| TGGATTGATACTGCTGCTGT+TGG | 0.488932 | tig0004180:+28449 | Msa1340550:CDS |
| GGTATGAAATTATTGCCAAC+TGG | 0.490927 | tig0004180:+28651 | Msa1340550:CDS |
| GACTGGAGGGGTGTACAGAA+AGG | 0.493026 | tig0004180:+28184 | Msa1340550:CDS |
| AAGCGCCATCAGCAAATTCA+AGG | 0.494398 | tig0004180:+27271 | Msa1340550:CDS |
| ATCCATATATGGTAATGTAC+AGG | 0.507199 | tig0004180:-28686 | None:intergenic |
| TATTCAACATTCCACAAGAC+CGG | 0.507281 | tig0004180:+31469 | Msa1340550:CDS |
| CTACTGGGTATCATCTTGGC+TGG | 0.511645 | tig0004180:+29475 | Msa1340550:CDS |
| CTTAGCAAGTCACCTCCTAA+AGG | 0.513329 | tig0004180:+30631 | Msa1340550:CDS |
| CTCTCAGGAATTGCAACAGA+TGG | 0.513447 | tig0004180:-27992 | None:intergenic |
| TCAACATATCTAGTTTCATA+AGG | 0.515189 | tig0004180:-28229 | None:intergenic |
| GATTCCACAGAGGCAGGAAG+TGG | 0.517050 | tig0004180:+31667 | Msa1340550:CDS |
| ATTTCCACTTCCTGCCTCTG+TGG | 0.523838 | tig0004180:-31671 | None:intergenic |
| AAGGAATTCCGCCCGACCAC+GGG | 0.524500 | tig0004180:-30611 | None:intergenic |
| AAGATGGCAGTGTAGATGCC+GGG | 0.526101 | tig0004180:+29545 | Msa1340550:CDS |
| ATGTGCAGGAATAATACTCT+TGG | 0.528936 | tig0004180:+28139 | Msa1340550:intron |
| GTCTCGTCCGAACTCTCGCT+CGG | 0.529462 | tig0004180:-31628 | None:intergenic |
| GAGAGGAACCCGTGGTCGGG+CGG | 0.540107 | tig0004180:+30603 | Msa1340550:CDS |
| GCTTACAGTTTGGAAAATCC+AGG | 0.540329 | tig0004180:-31863 | None:intergenic |
| CGAGACAATGGAGAGTGAAT+CGG | 0.541615 | tig0004180:+31645 | Msa1340550:CDS |
| GAGTGAAGAGATGCACAATC+CGG | 0.541797 | tig0004180:+28884 | Msa1340550:CDS |
| GTCAGTGTGAAAAGGATGAC+TGG | 0.542317 | tig0004180:+28167 | Msa1340550:CDS |
| GAAGATGGCAGTGTAGATGC+CGG | 0.547920 | tig0004180:+29544 | Msa1340550:CDS |
| CGAGAGTTCGGACGAGACAA+TGG | 0.548252 | tig0004180:+31633 | Msa1340550:CDS |
| GAAGGAGATACACCCAAAGT+TGG | 0.548963 | tig0004180:-27842 | None:intergenic |
| GCAACCCTTGAATTTGCTGA+TGG | 0.558035 | tig0004180:-27276 | None:intergenic |
| TGTGGCGAAAACCCAGAAGA+TGG | 0.564971 | tig0004180:-31415 | None:intergenic |
| GTTGCTCTTTCTGTACTACT+GGG | 0.565412 | tig0004180:+29460 | Msa1340550:CDS |
| CATCTCCAGAATTCACTGAC+TGG | 0.568556 | tig0004180:+31572 | Msa1340550:CDS |
| GACTGCCCCAAAAGTAAGGA+AGG | 0.573761 | tig0004180:-27860 | None:intergenic |
| ACTGGAGGGGTGTACAGAAA+GGG | 0.573841 | tig0004180:+28185 | Msa1340550:CDS |
| TGGTCTGACTCTCCTGTGAG+AGG | 0.576376 | tig0004180:+30721 | Msa1340550:CDS |
| GGGTGAGAGGAACCCGTGGT+CGG | 0.579700 | tig0004180:+30599 | Msa1340550:CDS |
| ATGTGGAATAGCCCTAAAAG+TGG | 0.582042 | tig0004180:+30658 | Msa1340550:CDS |
| TCTTCTCCTATCACGCTCAA+AGG | 0.585658 | tig0004180:+27374 | Msa1340550:CDS |
| TGGATGGTGTCAGTGTGAAA+AGG | 0.597753 | tig0004180:+28159 | Msa1340550:CDS |
| TTGGGGCAGTCTGATACTCA+AGG | 0.597921 | tig0004180:+27872 | Msa1340550:CDS |
| TTTCACAAACTGAGCAACCC+CGG | 0.604583 | tig0004180:-29563 | None:intergenic |
| ATCCAACTGCAAGACTAATG+AGG | 0.607041 | tig0004180:-28431 | None:intergenic |
| CATTACCATATATGGATCAG+TGG | 0.608996 | tig0004180:+28692 | Msa1340550:CDS |
| GGTATCTCAAGATTGAAGCT+CGG | 0.614150 | tig0004180:+27935 | Msa1340550:CDS |
| TGGAAAGACATACCTCTCAC+AGG | 0.621342 | tig0004180:-30733 | None:intergenic |
| GGATCGTTGACCATGCAGAT+CGG | 0.623735 | tig0004180:+31593 | Msa1340550:CDS |
| GTTGGCGAGTGAAGAAGTGA+AGG | 0.631703 | tig0004180:-27342 | None:intergenic |
| GTGTGAAAAGGATGACTGGA+GGG | 0.637824 | tig0004180:+28171 | Msa1340550:CDS |
| AGCGCCATCAGCAAATTCAA+GGG | 0.640054 | tig0004180:+27272 | Msa1340550:CDS |
| TAACAACTAGAGTGATGAGG+TGG | 0.642956 | tig0004180:+27216 | Msa1340550:exon |
| ACAACCCTAAAAGGACGTCA+TGG | 0.645076 | tig0004180:+30701 | Msa1340550:CDS |
| AACTTCTGGGACTCAATTAG+GGG | 0.646073 | tig0004180:+31438 | Msa1340550:CDS |
| TATTCACTAGAATGGGTGAG+AGG | 0.650160 | tig0004180:+30586 | Msa1340550:CDS |
| AGATGGCAGTGTAGATGCCG+GGG | 0.652953 | tig0004180:+29546 | Msa1340550:CDS |
| AGTGCAACTGTAACTGAACC+CGG | 0.653087 | tig0004180:-28274 | None:intergenic |
| AACAGCTCCACAAAAGACCA+AGG | 0.662563 | tig0004180:-30036 | None:intergenic |
| AAGTAACAACTAGAGTGATG+AGG | 0.669323 | tig0004180:+27213 | Msa1340550:exon |
| GCAGGAATAATACTCTTGGA+TGG | 0.680449 | tig0004180:+28143 | Msa1340550:intron |
| AAGATCGATTGTGAAATACC+GGG | 0.694905 | tig0004180:+28256 | Msa1340550:CDS |
| CAACAGAAAGAAGTTCACAA+AGG | 0.699080 | tig0004180:+31492 | Msa1340550:CDS |
| GTGGCTCTAAAGCAACAATG+TGG | 0.703894 | tig0004180:+30677 | Msa1340550:CDS |
| AGTGTGAAAAGGATGACTGG+AGG | 0.709404 | tig0004180:+28170 | Msa1340550:CDS |
| TGTGAAAAGGATGACTGGAG+GGG | 0.715947 | tig0004180:+28172 | Msa1340550:CDS |
| GAATGGGTGAGAGGAACCCG+TGG | 0.719365 | tig0004180:+30595 | Msa1340550:CDS |
| GAGTGAATCGGATTCCACAG+AGG | 0.750499 | tig0004180:+31657 | Msa1340550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATGTATATCTTATATA+CGG | + | tig0004180:29075-29094 | Msa1340550:intron | 10.0% |
| !! | TAAATTATTATATACTGAAA+GGG | - | tig0004180:29275-29294 | None:intergenic | 10.0% |
| !! | TTAAATTATTATATACTGAA+AGG | - | tig0004180:29276-29295 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAGAATAAATA+GGG | - | tig0004180:29970-29989 | None:intergenic | 10.0% |
| !! | AAAAAAAAATCAGAATAAAT+AGG | - | tig0004180:29971-29990 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTTACATAATAT+AGG | + | tig0004180:30343-30362 | Msa1340550:intron | 10.0% |
| !!! | TAAGATTTTTTAAAATTTCT+TGG | + | tig0004180:31152-31171 | Msa1340550:intron | 10.0% |
| !!! | ATAAATTGTTGCATTTTTTA+TGG | + | tig0004180:28935-28954 | Msa1340550:intron | 15.0% |
| !! | AAATTATTATATACTGAAAG+GGG | - | tig0004180:29274-29293 | None:intergenic | 15.0% |
| !!! | AATCCATTTCTTTATTTATT+TGG | + | tig0004180:29927-29946 | Msa1340550:intron | 15.0% |
| !! | AAAAAAATCAGAATAAATAG+GGG | - | tig0004180:29969-29988 | None:intergenic | 15.0% |
| !! | AAATAATGATAAAATAACAC+AGG | - | tig0004180:30439-30458 | None:intergenic | 15.0% |
| !!! | AAAAATATAAAAACTGATTC+TGG | - | tig0004180:30874-30893 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGTTGATTGTAA+TGG | + | tig0004180:31084-31103 | Msa1340550:intron | 15.0% |
| !! | AACAAAAAAATCAAATTCGA+TGG | + | tig0004180:27244-27263 | Msa1340550:CDS | 20.0% |
| !! | ACAAAAAAATCAAATTCGAT+GGG | + | tig0004180:27245-27264 | Msa1340550:CDS | 20.0% |
| !! | TTTCTTTATGTGATTCTATT+GGG | + | tig0004180:27500-27519 | Msa1340550:intron | 20.0% |
| !! | GTAAAACATAATAAGACAAA+AGG | - | tig0004180:27716-27735 | None:intergenic | 20.0% |
| !!! | AAATTAAGGTTTGTTTTCAT+AGG | + | tig0004180:28026-28045 | Msa1340550:CDS | 20.0% |
| !! | ATTGAACTGCTATAATAAAA+TGG | - | tig0004180:28498-28517 | None:intergenic | 20.0% |
| !!! | ATTTTATTATAGCAGTTCAA+TGG | + | tig0004180:28497-28516 | Msa1340550:CDS | 20.0% |
| !!! | CATTATAATCATTCTTTTTC+AGG | + | tig0004180:28539-28558 | Msa1340550:CDS | 20.0% |
| !! | AATTACCTTTGTATTATACA+TGG | + | tig0004180:28567-28586 | Msa1340550:intron | 20.0% |
| !! | CATAACACAATAGTAATATT+AGG | - | tig0004180:28787-28806 | None:intergenic | 20.0% |
| !! | TATCTAACAAAAAAATAGAC+AGG | - | tig0004180:28918-28937 | None:intergenic | 20.0% |
| !!! | ATATAATAAGGTTTTCTCTT+TGG | + | tig0004180:29189-29208 | Msa1340550:intron | 20.0% |
| !!! | TATAATAAGGTTTTCTCTTT+GGG | + | tig0004180:29190-29209 | Msa1340550:intron | 20.0% |
| !! | TATTTCATAAGAAGAATTGA+CGG | - | tig0004180:29419-29438 | None:intergenic | 20.0% |
| !!! | TTTGTTATTTCAAAAGAAGA+TGG | + | tig0004180:29529-29548 | Msa1340550:CDS | 20.0% |
| !! | AGTTAGAAAAAGACATATAT+TGG | + | tig0004180:29836-29855 | Msa1340550:intron | 20.0% |
| !! | AAAAAGACATATATTGGTAT+TGG | + | tig0004180:29842-29861 | Msa1340550:intron | 20.0% |
| !! | CAACCAAATAAATAAAGAAA+TGG | - | tig0004180:29933-29952 | None:intergenic | 20.0% |
| !!! | AAAGTATTAATAAAGCTGAA+AGG | - | tig0004180:30115-30134 | None:intergenic | 20.0% |
| !! | GAAGAATCAAATAATATCAT+AGG | - | tig0004180:31112-31131 | None:intergenic | 20.0% |
| !! | ATGATATTATTTGATTCTTC+TGG | + | tig0004180:31112-31131 | Msa1340550:intron | 20.0% |
| !! | TAAGAAAAATATCTACATGT+TGG | - | tig0004180:31838-31857 | None:intergenic | 20.0% |
| ! | AAAGAAGAGAAAAAGAACAA+GGG | - | tig0004180:27318-27337 | None:intergenic | 25.0% |
| ! | TTGAATAAGAAGAAATGCAT+TGG | - | tig0004180:27441-27460 | None:intergenic | 25.0% |
| ! | GTTTCTTTATGTGATTCTAT+TGG | + | tig0004180:27499-27518 | Msa1340550:intron | 25.0% |
| ! | CGACTATTTCAAGATTTATA+TGG | + | tig0004180:27598-27617 | Msa1340550:intron | 25.0% |
| !! | TAATTCATTGCATGTTACTT+TGG | + | tig0004180:27967-27986 | Msa1340550:CDS | 25.0% |
| ! | GAGATTGCATAACAAAATTA+AGG | + | tig0004180:28012-28031 | Msa1340550:CDS | 25.0% |
| !! | TCAACATATCTAGTTTCATA+AGG | - | tig0004180:28232-28251 | None:intergenic | 25.0% |
| ! | GAAATCCATGTATAATACAA+AGG | - | tig0004180:28575-28594 | None:intergenic | 25.0% |
| ! | AAGAAACTGGTTAGAAAAAT+TGG | - | tig0004180:28616-28635 | None:intergenic | 25.0% |
| !!! | TATTGTGTTATGTTTTAGCT+TGG | + | tig0004180:28795-28814 | Msa1340550:intron | 25.0% |
| ! | AATTTACGATCATAGAGAAT+TGG | - | tig0004180:28842-28861 | None:intergenic | 25.0% |
| ! | GATGTTCAATATAGATGTTA+AGG | - | tig0004180:29015-29034 | None:intergenic | 25.0% |
| ! | AACATCTATATTGAACATCT+AGG | + | tig0004180:29016-29035 | Msa1340550:intron | 25.0% |
| ! | ATTATATTTCAAAGATCGCA+TGG | - | tig0004180:29176-29195 | None:intergenic | 25.0% |
| !!! | GCGATCTTTGAAATATAATA+AGG | + | tig0004180:29177-29196 | Msa1340550:intron | 25.0% |
| ! | AAAGCACAGAATCTTATTAT+AGG | + | tig0004180:30280-30299 | Msa1340550:intron | 25.0% |
| ! | AAACAGTAAAAACAGCATAT+GGG | - | tig0004180:30386-30405 | None:intergenic | 25.0% |
| ! | AAAACAGTAAAAACAGCATA+TGG | - | tig0004180:30387-30406 | None:intergenic | 25.0% |
| ! | TTGAATGAATGATCTTTGAT+GGG | - | tig0004180:30479-30498 | None:intergenic | 25.0% |
| ! | TTGAAGTTTGTAATTTATGC+AGG | + | tig0004180:30539-30558 | Msa1340550:intron | 25.0% |
| ! | ATGATGATTATTCACTAGAA+TGG | + | tig0004180:30578-30597 | Msa1340550:CDS | 25.0% |
| ! | TGATGATTATTCACTAGAAT+GGG | + | tig0004180:30579-30598 | Msa1340550:CDS | 25.0% |
| ! | TTATCACATATCAACAAGAT+TGG | - | tig0004180:30756-30775 | None:intergenic | 25.0% |
| ! | TAATGTATACTGCATGTTAT+TGG | + | tig0004180:30773-30792 | Msa1340550:intron | 25.0% |
| !! | AGATTTTGTCTACCAAAATA+TGG | + | tig0004180:30803-30822 | Msa1340550:intron | 25.0% |
| !! | GATTTTGTCTACCAAAATAT+GGG | + | tig0004180:30804-30823 | Msa1340550:intron | 25.0% |
| ! | GTCAAAAAAAAAAACTGAAG+TGG | + | tig0004180:30915-30934 | Msa1340550:intron | 25.0% |
| !!! | TTATAGTGGATCAGAATTTA+GGG | - | tig0004180:30966-30985 | None:intergenic | 25.0% |
| !!! | TTTATAGTGGATCAGAATTT+AGG | - | tig0004180:30967-30986 | None:intergenic | 25.0% |
| !!! | ATGGATTTTGGCTTTTTAAT+TGG | + | tig0004180:31692-31711 | Msa1340550:CDS | 25.0% |
| ! | TATGAAAAATCAATTTCTGC+TGG | - | tig0004180:31750-31769 | None:intergenic | 25.0% |
| !!! | AGCAGAAATTGATTTTTCAT+AGG | + | tig0004180:31749-31768 | Msa1340550:three_prime_UTR | 25.0% |
| !!! | GCAGAAATTGATTTTTCATA+GGG | + | tig0004180:31750-31769 | Msa1340550:three_prime_UTR | 25.0% |
| !!! | AATTGATTTTTCATAGGGTT+AGG | + | tig0004180:31755-31774 | Msa1340550:three_prime_UTR | 25.0% |
| ! | AACAGTAACGAATGTAATTT+AGG | + | tig0004180:31779-31798 | Msa1340550:three_prime_UTR | 25.0% |
| GAAAGAAGAGAAAAAGAACA+AGG | - | tig0004180:27319-27338 | None:intergenic | 30.0% | |
| TAAGAAGAAGAAGAAGAAGA+AGG | - | tig0004180:27407-27426 | None:intergenic | 30.0% | |
| TTATGTGATTCTATTGGGTT+TGG | + | tig0004180:27505-27524 | Msa1340550:intron | 30.0% | |
| ATTTGAAGATGTATATGAGC+TGG | + | tig0004180:27547-27566 | Msa1340550:intron | 30.0% | |
| AGTGACATCAATTACTATCT+AGG | - | tig0004180:27690-27709 | None:intergenic | 30.0% | |
| ! | AAACATAACTTGCACACATT+TGG | - | tig0004180:27756-27775 | None:intergenic | 30.0% |
| TGATATTGAAAGTCCAACTT+TGG | + | tig0004180:27829-27848 | Msa1340550:CDS | 30.0% | |
| GATATTGAAAGTCCAACTTT+GGG | + | tig0004180:27830-27849 | Msa1340550:CDS | 30.0% | |
| !! | ATTTTGTTATGCAATCTCTC+AGG | - | tig0004180:28010-28029 | None:intergenic | 30.0% |
| ! | ATATTTCCCATTTTCTGACA+CGG | - | tig0004180:28319-28338 | None:intergenic | 30.0% |
| AAACTGGTTAGAAAAATTGG+AGG | - | tig0004180:28613-28632 | None:intergenic | 30.0% | |
| !!! | AGGAAATTTTTTCTTCCAGT+TGG | - | tig0004180:28669-28688 | None:intergenic | 30.0% |
| TTCCTGTACATTACCATATA+TGG | + | tig0004180:28684-28703 | Msa1340550:CDS | 30.0% | |
| ! | ATCCATATATGGTAATGTAC+AGG | - | tig0004180:28689-28708 | None:intergenic | 30.0% |
| AATTCAATTCTTCAGAGTCT+TGG | + | tig0004180:28858-28877 | Msa1340550:CDS | 30.0% | |
| ATTCAATTCTTCAGAGTCTT+GGG | + | tig0004180:28859-28878 | Msa1340550:CDS | 30.0% | |
| AAAAACCAACCAAAAGGATT+GGG | - | tig0004180:29044-29063 | None:intergenic | 30.0% | |
| AAAAAACCAACCAAAAGGAT+TGG | - | tig0004180:29045-29064 | None:intergenic | 30.0% | |
| TGAAGAAAAAACCAACCAAA+AGG | - | tig0004180:29050-29069 | None:intergenic | 30.0% | |
| ! | TATACGGTGAGCTAAATTTT+TGG | + | tig0004180:29091-29110 | Msa1340550:intron | 30.0% |
| ! | ATACGGTGAGCTAAATTTTT+GGG | + | tig0004180:29092-29111 | Msa1340550:intron | 30.0% |
| !! | ATTGGTAATGATTCTGAAAG+TGG | + | tig0004180:29860-29879 | Msa1340550:intron | 30.0% |
| CAATACAATTGCTTCATGAA+TGG | + | tig0004180:30075-30094 | Msa1340550:CDS | 30.0% | |
| !! | TGCATTTGCATAGTCATTTT+AGG | + | tig0004180:30157-30176 | Msa1340550:intron | 30.0% |
| ! | AGTAGATGAAATGGTTTTCA+TGG | + | tig0004180:30200-30219 | Msa1340550:intron | 30.0% |
| CTTGAATGAATGATCTTTGA+TGG | - | tig0004180:30480-30499 | None:intergenic | 30.0% | |
| CATCAAAGATCATTCATTCA+AGG | + | tig0004180:30478-30497 | Msa1340550:intron | 30.0% | |
| ! | CTATTCCACATTTTTCCTTT+AGG | - | tig0004180:30649-30668 | None:intergenic | 30.0% |
| ! | ATTCAGTAGGCATAATTTTC+GGG | - | tig0004180:30847-30866 | None:intergenic | 30.0% |
| ! | CATTCAGTAGGCATAATTTT+CGG | - | tig0004180:30848-30867 | None:intergenic | 30.0% |
| ! | AATTTAGGGCATATGCATAT+TGG | - | tig0004180:30952-30971 | None:intergenic | 30.0% |
| CAATTATAGAAGCTGAGTTA+TGG | - | tig0004180:31002-31021 | None:intergenic | 30.0% | |
| AAATCTTCCATTCAGATAGA+TGG | + | tig0004180:31023-31042 | Msa1340550:intron | 30.0% | |
| ACTTTATCCATCTATCTGAA+TGG | - | tig0004180:31033-31052 | None:intergenic | 30.0% | |
| TAATTCACTTTCTCTGTTTC+AGG | + | tig0004180:31382-31401 | Msa1340550:intron | 30.0% | |
| ! | GATATTTTTCTTACTTTGCC+TGG | + | tig0004180:31845-31864 | Msa1340550:three_prime_UTR | 30.0% |
| TAGATTTGACATGATTGTTC+AGG | - | tig0004180:31888-31907 | None:intergenic | 30.0% | |
| GAACAATCATGTCAAATCTA+TGG | + | tig0004180:31888-31907 | Msa1340550:three_prime_UTR | 30.0% | |
| AAGTAACAACTAGAGTGATG+AGG | + | tig0004180:27213-27232 | Msa1340550:exon | 35.0% | |
| AGGAGAAGATTGATCATTGT+TGG | - | tig0004180:27363-27382 | None:intergenic | 35.0% | |
| GCACACATTTGGATAATTGA+TGG | - | tig0004180:27745-27764 | None:intergenic | 35.0% | |
| ! | TGTATCTCCTTCCTTACTTT+TGG | + | tig0004180:27853-27872 | Msa1340550:CDS | 35.0% |
| !! | GTATCTCCTTCCTTACTTTT+GGG | + | tig0004180:27854-27873 | Msa1340550:CDS | 35.0% |
| !! | TATCTCCTTCCTTACTTTTG+GGG | + | tig0004180:27855-27874 | Msa1340550:CDS | 35.0% |
| !! | AATTGCTGTTTCTTATGTGC+AGG | + | tig0004180:28125-28144 | Msa1340550:intron | 35.0% |
| ATGTGCAGGAATAATACTCT+TGG | + | tig0004180:28139-28158 | Msa1340550:intron | 35.0% | |
| CAAGATCGATTGTGAAATAC+CGG | + | tig0004180:28255-28274 | Msa1340550:CDS | 35.0% | |
| AAGATCGATTGTGAAATACC+GGG | + | tig0004180:28256-28275 | Msa1340550:CDS | 35.0% | |
| GTTACAGTTGCACTTAAAGA+AGG | + | tig0004180:28283-28302 | Msa1340550:CDS | 35.0% | |
| TTTCTTCCGTGTCAGAAAAT+GGG | + | tig0004180:28310-28329 | Msa1340550:intron | 35.0% | |
| TATAGCAGTTCAATGGCTAT+AGG | + | tig0004180:28504-28523 | Msa1340550:CDS | 35.0% | |
| GGTATGAAATTATTGCCAAC+TGG | + | tig0004180:28651-28670 | Msa1340550:CDS | 35.0% | |
| CATTACCATATATGGATCAG+TGG | + | tig0004180:28692-28711 | Msa1340550:CDS | 35.0% | |
| !! | TGGTGAGTTTGGTTCATTTT+TGG | + | tig0004180:28712-28731 | Msa1340550:intron | 35.0% |
| !!! | TTATGTTTTAGCTTGGAGCT+GGG | + | tig0004180:28802-28821 | Msa1340550:intron | 35.0% |
| TCATAGAGAATTGGTGCAAA+AGG | - | tig0004180:28833-28852 | None:intergenic | 35.0% | |
| AAATAGACAGGTACACTTAC+CGG | - | tig0004180:28906-28925 | None:intergenic | 35.0% | |
| ATATTTCAAAGATCGCATGG+TGG | - | tig0004180:29173-29192 | None:intergenic | 35.0% | |
| GTCTTCCATCATATGGAATT+TGG | + | tig0004180:29381-29400 | Msa1340550:intron | 35.0% | |
| ACACACCAAATTCCATATGA+TGG | - | tig0004180:29389-29408 | None:intergenic | 35.0% | |
| ! | ACTTTACCTCTATGATTTGC+AGG | + | tig0004180:29438-29457 | Msa1340550:intron | 35.0% |
| !!! | TGGAACTACTTTTGTTTTGC+AGG | + | tig0004180:29603-29622 | Msa1340550:CDS | 35.0% |
| CAAAACATGTCACATATGAC+AGG | - | tig0004180:29686-29705 | None:intergenic | 35.0% | |
| ! | CATATGTGACATGTTTTGCT+AGG | + | tig0004180:29688-29707 | Msa1340550:intron | 35.0% |
| !! | ATATTTTTGATGCAGCTGCA+CGG | + | tig0004180:29895-29914 | Msa1340550:intron | 35.0% |
| ! | CTTGATAATACTCTTGCAGT+TGG | + | tig0004180:30011-30030 | Msa1340550:CDS | 35.0% |
| !!! | TTTTAGGTTTGTCTTGTCCA+AGG | + | tig0004180:30173-30192 | Msa1340550:intron | 35.0% |
| !! | TGCTAACAACTTGCTACTAA+GGG | + | tig0004180:30223-30242 | Msa1340550:intron | 35.0% |
| ! | TCATTCATTCAAGGCATTCA+AGG | + | tig0004180:30487-30506 | Msa1340550:intron | 35.0% |
| ! | TTCCACATTTTTCCTTTAGG+AGG | - | tig0004180:30646-30665 | None:intergenic | 35.0% |
| !!! | TTGCTTTAGAGCCACTTTTA+GGG | - | tig0004180:30672-30691 | None:intergenic | 35.0% |
| TTGGTAGACAAAATCTTGCT+TGG | - | tig0004180:30799-30818 | None:intergenic | 35.0% | |
| ! | AAGACAGACTACCCATATTT+TGG | - | tig0004180:30818-30837 | None:intergenic | 35.0% |
| ! | TGATTCTGGTTACATTCAGT+AGG | - | tig0004180:30860-30879 | None:intergenic | 35.0% |
| ! | GACATCAAAGTGCTTTATAG+TGG | - | tig0004180:30980-30999 | None:intergenic | 35.0% |
| TTTCTGATTTCTTGACCTCT+GGG | + | tig0004180:31183-31202 | Msa1340550:intron | 35.0% | |
| ! | GTGCTATTACTGAAAACAAG+TGG | + | tig0004180:31306-31325 | Msa1340550:intron | 35.0% |
| !! | AAACTTCTGGGACTCAATTA+GGG | + | tig0004180:31437-31456 | Msa1340550:CDS | 35.0% |
| TATTCAACATTCCACAAGAC+CGG | + | tig0004180:31469-31488 | Msa1340550:CDS | 35.0% | |
| CAACAGAAAGAAGTTCACAA+AGG | + | tig0004180:31492-31511 | Msa1340550:CDS | 35.0% | |
| AGAAGTTCACAAAGGAAGAA+TGG | + | tig0004180:31500-31519 | Msa1340550:CDS | 35.0% | |
| GAAGTTCACAAAGGAAGAAT+GGG | + | tig0004180:31501-31520 | Msa1340550:CDS | 35.0% | |
| ! | AAAGCAAGCTTTAGCTGAAT+GGG | + | tig0004180:31546-31565 | Msa1340550:CDS | 35.0% |
| TAACAACTAGAGTGATGAGG+TGG | + | tig0004180:27216-27235 | Msa1340550:exon | 40.0% | |
| AGAGAAAAAGAACAAGGGTG+AGG | - | tig0004180:27313-27332 | None:intergenic | 40.0% | |
| TGTTTACCTTTGAGCGTGAT+AGG | - | tig0004180:27383-27402 | None:intergenic | 40.0% | |
| GCTGGTTGATCTTCATTTGT+CGG | + | tig0004180:27565-27584 | Msa1340550:intron | 40.0% | |
| ! | TTGATCTTCATTTGTCGGCT+GGG | + | tig0004180:27570-27589 | Msa1340550:intron | 40.0% |
| GGTATCTCAAGATTGAAGCT+CGG | + | tig0004180:27935-27954 | Msa1340550:CDS | 40.0% | |
| AGTGCATAACACCTTCCTAT+CGG | + | tig0004180:28051-28070 | Msa1340550:intron | 40.0% | |
| GCAGGAATAATACTCTTGGA+TGG | + | tig0004180:28143-28162 | Msa1340550:intron | 40.0% | |
| GTTTCTTCCGTGTCAGAAAA+TGG | + | tig0004180:28309-28328 | Msa1340550:intron | 40.0% | |
| CTGCACGAATTGTTGTAGAA+CGG | - | tig0004180:28395-28414 | None:intergenic | 40.0% | |
| ! | TTCGTGCAGATTTTCAGCAA+TGG | + | tig0004180:28406-28425 | Msa1340550:intron | 40.0% |
| ATCCAACTGCAAGACTAATG+AGG | - | tig0004180:28434-28453 | None:intergenic | 40.0% | |
| ACTCACCACTGATCCATATA+TGG | - | tig0004180:28700-28719 | None:intergenic | 40.0% | |
| ATATGGATCAGTGGTGAGTT+TGG | + | tig0004180:28701-28720 | Msa1340550:intron | 40.0% | |
| !!! | GTTATGTTTTAGCTTGGAGC+TGG | + | tig0004180:28801-28820 | Msa1340550:intron | 40.0% |
| ! | ATCTAGGTTCCCAATCCTTT+TGG | + | tig0004180:29032-29051 | Msa1340550:intron | 40.0% |
| AGTTGACAATTCTTGCCTAG+CGG | - | tig0004180:29361-29380 | None:intergenic | 40.0% | |
| GTCAACTGTCTTCCATCATA+TGG | + | tig0004180:29374-29393 | Msa1340550:intron | 40.0% | |
| TCATAAGAAGAATTGACGGC+TGG | - | tig0004180:29415-29434 | None:intergenic | 40.0% | |
| GTTGCTCTTTCTGTACTACT+GGG | + | tig0004180:29460-29479 | Msa1340550:CDS | 40.0% | |
| TGTACTACTGGGTATCATCT+TGG | + | tig0004180:29471-29490 | Msa1340550:CDS | 40.0% | |
| GGTTGCTCAGTTTGTGAAAT+GGG | + | tig0004180:29567-29586 | Msa1340550:CDS | 40.0% | |
| CATTTCATCTACTGCTTCCT+TGG | - | tig0004180:30193-30212 | None:intergenic | 40.0% | |
| CAAGGAAGCAGTAGATGAAA+TGG | + | tig0004180:30191-30210 | Msa1340550:intron | 40.0% | |
| !! | GTGCTAACAACTTGCTACTA+AGG | + | tig0004180:30222-30241 | Msa1340550:intron | 40.0% |
| CTTGCTACTAAGGGATGAAT+TGG | + | tig0004180:30232-30251 | Msa1340550:intron | 40.0% | |
| ! | TTTGATGGGTCACGACAAAA+GGG | - | tig0004180:30465-30484 | None:intergenic | 40.0% |
| TATTCACTAGAATGGGTGAG+AGG | + | tig0004180:30586-30605 | Msa1340550:CDS | 40.0% | |
| CACCTCCTAAAGGAAAAATG+TGG | + | tig0004180:30641-30660 | Msa1340550:CDS | 40.0% | |
| ATGTGGAATAGCCCTAAAAG+TGG | + | tig0004180:30658-30677 | Msa1340550:CDS | 40.0% | |
| !!! | GTTGCTTTAGAGCCACTTTT+AGG | - | tig0004180:30673-30692 | None:intergenic | 40.0% |
| CAATGTGGAACAACCCTAAA+AGG | + | tig0004180:30692-30711 | Msa1340550:CDS | 40.0% | |
| GTTTCTGATTTCTTGACCTC+TGG | + | tig0004180:31182-31201 | Msa1340550:intron | 40.0% | |
| GTGTTGTATCACCATCTTCT+GGG | + | tig0004180:31404-31423 | Msa1340550:CDS | 40.0% | |
| AATTGAGTCCCAGAAGTTTG+TGG | - | tig0004180:31436-31455 | None:intergenic | 40.0% | |
| !! | CAAACTTCTGGGACTCAATT+AGG | + | tig0004180:31436-31455 | Msa1340550:CDS | 40.0% |
| !! | AACTTCTGGGACTCAATTAG+GGG | + | tig0004180:31438-31457 | Msa1340550:CDS | 40.0% |
| TGTGAACTTCTTTCTGTTGC+CGG | - | tig0004180:31491-31510 | None:intergenic | 40.0% | |
| ! | TTCAGCTAAAGCTTGCTTTG+TGG | - | tig0004180:31545-31564 | None:intergenic | 40.0% |
| ! | CAAAGCAAGCTTTAGCTGAA+TGG | + | tig0004180:31545-31564 | Msa1340550:CDS | 40.0% |
| !! | CAGGAAGTGGAAATGGATTT+TGG | + | tig0004180:31680-31699 | Msa1340550:CDS | 40.0% |
| GCTTACAGTTTGGAAAATCC+AGG | - | tig0004180:31866-31885 | None:intergenic | 40.0% | |
| GATTGTTCAGGCTTACAGTT+TGG | - | tig0004180:31876-31895 | None:intergenic | 40.0% | |
| AAGCGCCATCAGCAAATTCA+AGG | + | tig0004180:27271-27290 | Msa1340550:CDS | 45.0% | |
| AGCGCCATCAGCAAATTCAA+GGG | + | tig0004180:27272-27291 | Msa1340550:CDS | 45.0% | |
| !! | GCAACCCTTGAATTTGCTGA+TGG | - | tig0004180:27279-27298 | None:intergenic | 45.0% |
| TCTTCTCCTATCACGCTCAA+AGG | + | tig0004180:27374-27393 | Msa1340550:CDS | 45.0% | |
| GTTGATCTTCATTTGTCGGC+TGG | + | tig0004180:27569-27588 | Msa1340550:intron | 45.0% | |
| GAAGGAGATACACCCAAAGT+TGG | - | tig0004180:27845-27864 | None:intergenic | 45.0% | |
| ATCAGACTGCCCCAAAAGTA+AGG | - | tig0004180:27867-27886 | None:intergenic | 45.0% | |
| CTCTCAGGAATTGCAACAGA+TGG | - | tig0004180:27995-28014 | None:intergenic | 45.0% | |
| ! | TGGATGGTGTCAGTGTGAAA+AGG | + | tig0004180:28159-28178 | Msa1340550:CDS | 45.0% |
| GTCAGTGTGAAAAGGATGAC+TGG | + | tig0004180:28167-28186 | Msa1340550:CDS | 45.0% | |
| AGTGTGAAAAGGATGACTGG+AGG | + | tig0004180:28170-28189 | Msa1340550:CDS | 45.0% | |
| GTGTGAAAAGGATGACTGGA+GGG | + | tig0004180:28171-28190 | Msa1340550:CDS | 45.0% | |
| TGTGAAAAGGATGACTGGAG+GGG | + | tig0004180:28172-28191 | Msa1340550:CDS | 45.0% | |
| AGTGCAACTGTAACTGAACC+CGG | - | tig0004180:28277-28296 | None:intergenic | 45.0% | |
| TGGATTGATACTGCTGCTGT+TGG | + | tig0004180:28449-28468 | Msa1340550:CDS | 45.0% | |
| TGGCTCCAATTGTTAGCAGT+TGG | + | tig0004180:28469-28488 | Msa1340550:CDS | 45.0% | |
| GGCTCCAATTGTTAGCAGTT+GGG | + | tig0004180:28470-28489 | Msa1340550:CDS | 45.0% | |
| GGAACCCAACTGCTAACAAT+TGG | - | tig0004180:28477-28496 | None:intergenic | 45.0% | |
| TTTCTTCCGACTGTGATGCA+GGG | + | tig0004180:28630-28649 | Msa1340550:intron | 45.0% | |
| TTCATACCCTGCATCACAGT+CGG | - | tig0004180:28639-28658 | None:intergenic | 45.0% | |
| GAGTGAAGAGATGCACAATC+CGG | + | tig0004180:28884-28903 | Msa1340550:CDS | 45.0% | |
| ! | AGGTTCCCAATCCTTTTGGT+TGG | + | tig0004180:29036-29055 | Msa1340550:intron | 45.0% |
| TCAGCAGAGAATAGCTGCTA+AGG | + | tig0004180:29233-29252 | Msa1340550:intron | 45.0% | |
| AATATGGCCAGCAAGCATCA+GGG | - | tig0004180:29331-29350 | None:intergenic | 45.0% | |
| AAATATGGCCAGCAAGCATC+AGG | - | tig0004180:29332-29351 | None:intergenic | 45.0% | |
| GAGCAACCTGCAAATCATAG+AGG | - | tig0004180:29447-29466 | None:intergenic | 45.0% | |
| GGTTGCTCTTTCTGTACTAC+TGG | + | tig0004180:29459-29478 | Msa1340550:intron | 45.0% | |
| CTTTAGGCTACTGGATTGTC+AGG | + | tig0004180:29503-29522 | Msa1340550:CDS | 45.0% | |
| TTTCACAAACTGAGCAACCC+CGG | - | tig0004180:29566-29585 | None:intergenic | 45.0% | |
| GGGTTGCTCAGTTTGTGAAA+TGG | + | tig0004180:29566-29585 | Msa1340550:CDS | 45.0% | |
| AAATGGGCAATGCGCGTTAT+TGG | + | tig0004180:29583-29602 | Msa1340550:CDS | 45.0% | |
| ! | ATTCTGAAAGTGGCGTAGCT+TGG | + | tig0004180:29870-29889 | Msa1340550:intron | 45.0% |
| AACAGCTCCACAAAAGACCA+AGG | - | tig0004180:30039-30058 | None:intergenic | 45.0% | |
| ! | CTTTGATGGGTCACGACAAA+AGG | - | tig0004180:30466-30485 | None:intergenic | 45.0% |
| !! | CTTTAGGAGGTGACTTGCTA+AGG | - | tig0004180:30633-30652 | None:intergenic | 45.0% |
| CTTAGCAAGTCACCTCCTAA+AGG | + | tig0004180:30631-30650 | Msa1340550:CDS | 45.0% | |
| !! | GTGGCTCTAAAGCAACAATG+TGG | + | tig0004180:30677-30696 | Msa1340550:CDS | 45.0% |
| ACAACCCTAAAAGGACGTCA+TGG | + | tig0004180:30701-30720 | Msa1340550:CDS | 45.0% | |
| ! | CAGACCATGACGTCCTTTTA+GGG | - | tig0004180:30708-30727 | None:intergenic | 45.0% |
| ! | TCAGACCATGACGTCCTTTT+AGG | - | tig0004180:30709-30728 | None:intergenic | 45.0% |
| TGGAAAGACATACCTCTCAC+AGG | - | tig0004180:30736-30755 | None:intergenic | 45.0% | |
| ! | GGTGTTGTATCACCATCTTC+TGG | + | tig0004180:31403-31422 | Msa1340550:intron | 45.0% |
| ! | GGTTTTCGCCACAAACTTCT+GGG | + | tig0004180:31425-31444 | Msa1340550:CDS | 45.0% |
| CATCTCCAGAATTCACTGAC+TGG | + | tig0004180:31572-31591 | Msa1340550:CDS | 45.0% | |
| ACGATCCAGTCAGTGAATTC+TGG | - | tig0004180:31580-31599 | None:intergenic | 45.0% | |
| !! | GCAGTTTTATCCGATCTGCA+TGG | - | tig0004180:31606-31625 | None:intergenic | 45.0% |
| CGAGACAATGGAGAGTGAAT+CGG | + | tig0004180:31645-31664 | Msa1340550:CDS | 45.0% | |
| GTTGGCGAGTGAAGAAGTGA+AGG | - | tig0004180:27345-27364 | None:intergenic | 50.0% | |
| GACTGCCCCAAAAGTAAGGA+AGG | - | tig0004180:27863-27882 | None:intergenic | 50.0% | |
| TTGGGGCAGTCTGATACTCA+AGG | + | tig0004180:27872-27891 | Msa1340550:CDS | 50.0% | |
| ! | TGTGAGCGCGTTCAAGTTTC+TGG | + | tig0004180:27914-27933 | Msa1340550:CDS | 50.0% |
| AACACCTTCCTATCGGCATC+TGG | + | tig0004180:28058-28077 | Msa1340550:intron | 50.0% | |
| ACACCTTCCTATCGGCATCT+GGG | + | tig0004180:28059-28078 | Msa1340550:intron | 50.0% | |
| ! | ACTGGAGGGGTGTACAGAAA+GGG | + | tig0004180:28185-28204 | Msa1340550:CDS | 50.0% |
| GGGGTGTACAGAAAGGGATT+TGG | + | tig0004180:28191-28210 | Msa1340550:CDS | 50.0% | |
| !! | CGCCTCATTAGTCTTGCAGT+TGG | + | tig0004180:28429-28448 | Msa1340550:CDS | 50.0% |
| GCATCACAGTCGGAAGAAAC+TGG | - | tig0004180:28629-28648 | None:intergenic | 50.0% | |
| GTTTCTTCCGACTGTGATGC+AGG | + | tig0004180:28629-28648 | Msa1340550:intron | 50.0% | |
| AGCAGCTATTCTCTGCTGAC+TGG | - | tig0004180:29232-29251 | None:intergenic | 50.0% | |
| GCAGAGAATAGCTGCTAAGG+TGG | + | tig0004180:29236-29255 | Msa1340550:intron | 50.0% | |
| GCCATATTTGCTTGTCCGCT+AGG | + | tig0004180:29343-29362 | Msa1340550:intron | 50.0% | |
| ! | GCCTAGCGGACAAGCAAATA+TGG | - | tig0004180:29347-29366 | None:intergenic | 50.0% |
| CTACTGGGTATCATCTTGGC+TGG | + | tig0004180:29475-29494 | Msa1340550:CDS | 50.0% | |
| ! | ATCTTGGCTGGAGCTGCTTT+AGG | + | tig0004180:29487-29506 | Msa1340550:CDS | 50.0% |
| GAAGATGGCAGTGTAGATGC+CGG | + | tig0004180:29544-29563 | Msa1340550:CDS | 50.0% | |
| AAGATGGCAGTGTAGATGCC+GGG | + | tig0004180:29545-29564 | Msa1340550:CDS | 50.0% | |
| TACTCTTGCAGTTGGAGCCT+TGG | + | tig0004180:30019-30038 | Msa1340550:CDS | 50.0% | |
| !! | GTTGGAGCCTTGGTCTTTTG+TGG | + | tig0004180:30029-30048 | Msa1340550:CDS | 50.0% |
| GATTTCTTGACCTCTGGGTC+TGG | + | tig0004180:31188-31207 | Msa1340550:intron | 50.0% | |
| TGTGGCGAAAACCCAGAAGA+TGG | - | tig0004180:31418-31437 | None:intergenic | 50.0% | |
| ! | GGGTTTTCGCCACAAACTTC+TGG | + | tig0004180:31424-31443 | Msa1340550:CDS | 50.0% |
| TCTTTCTGTTGCCGGTCTTG+TGG | - | tig0004180:31483-31502 | None:intergenic | 50.0% | |
| GGATCGTTGACCATGCAGAT+CGG | + | tig0004180:31593-31612 | Msa1340550:CDS | 50.0% | |
| GAGTGAATCGGATTCCACAG+AGG | + | tig0004180:31657-31676 | Msa1340550:CDS | 50.0% | |
| ATTTCCACTTCCTGCCTCTG+TGG | - | tig0004180:31674-31693 | None:intergenic | 50.0% | |
| ACAGAGGCAGGAAGTGGAAA+TGG | + | tig0004180:31673-31692 | Msa1340550:CDS | 50.0% | |
| AGTGCGTGCGTTACAACTGC+AGG | + | tig0004180:27803-27822 | Msa1340550:intron | 55.0% | |
| GTATGCTCCCAGATGCCGAT+AGG | - | tig0004180:28069-28088 | None:intergenic | 55.0% | |
| ! | GACTGGAGGGGTGTACAGAA+AGG | + | tig0004180:28184-28203 | Msa1340550:CDS | 55.0% |
| ACATGTGCCCTGATGCTTGC+TGG | + | tig0004180:29321-29340 | Msa1340550:intron | 55.0% | |
| ! | CTGGAGCTGCTTTAGGCTAC+TGG | + | tig0004180:29494-29513 | Msa1340550:CDS | 55.0% |
| AGATGGCAGTGTAGATGCCG+GGG | + | tig0004180:29546-29565 | Msa1340550:CDS | 55.0% | |
| TAAGGAATTCCGCCCGACCA+CGG | - | tig0004180:30615-30634 | None:intergenic | 55.0% | |
| TGGTCTGACTCTCCTGTGAG+AGG | + | tig0004180:30721-30740 | Msa1340550:CDS | 55.0% | |
| ACTGCTTCCGAGCGAGAGTT+CGG | + | tig0004180:31621-31640 | Msa1340550:CDS | 55.0% | |
| CGAGAGTTCGGACGAGACAA+TGG | + | tig0004180:31633-31652 | Msa1340550:CDS | 55.0% | |
| GAATCGGATTCCACAGAGGC+AGG | + | tig0004180:31661-31680 | Msa1340550:CDS | 55.0% | |
| GATTCCACAGAGGCAGGAAG+TGG | + | tig0004180:31667-31686 | Msa1340550:CDS | 55.0% | |
| GCTCCCAGATGCCGATAGGA+AGG | - | tig0004180:28065-28084 | None:intergenic | 60.0% | |
| GAATGGGTGAGAGGAACCCG+TGG | + | tig0004180:30595-30614 | Msa1340550:CDS | 60.0% | |
| AAGGAATTCCGCCCGACCAC+GGG | - | tig0004180:30614-30633 | None:intergenic | 60.0% | |
| ! | TGACCTCTGGGTCTGGCTTG+TGG | + | tig0004180:31195-31214 | Msa1340550:intron | 60.0% |
| TCACCACAAGCCAGACCCAG+AGG | - | tig0004180:31201-31220 | None:intergenic | 60.0% | |
| GTCTCGTCCGAACTCTCGCT+CGG | - | tig0004180:31631-31650 | None:intergenic | 60.0% | |
| GGGTGAGAGGAACCCGTGGT+CGG | + | tig0004180:30599-30618 | Msa1340550:CDS | 65.0% | |
| GGTGAGAGGAACCCGTGGTC+GGG | + | tig0004180:30600-30619 | Msa1340550:CDS | 65.0% | |
| GAGAGGAACCCGTGGTCGGG+CGG | + | tig0004180:30603-30622 | Msa1340550:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004180 | gene | 27175 | 31934 | 27175 | ID=Msa1340550;Name=Msa1340550 |
| tig0004180 | mRNA | 27175 | 31934 | 27175 | ID=Msa1340550-mRNA-1;Parent=Msa1340550;Name=Msa1340550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=55|1|1|1|1|1|10|217|533 |
| tig0004180 | exon | 27175 | 27395 | 27175 | ID=Msa1340550-mRNA-1:exon:2721;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 27825 | 28047 | 27825 | ID=Msa1340550-mRNA-1:exon:2722;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 28147 | 28304 | 28147 | ID=Msa1340550-mRNA-1:exon:2723;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 28415 | 28560 | 28415 | ID=Msa1340550-mRNA-1:exon:2724;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 28651 | 28713 | 28651 | ID=Msa1340550-mRNA-1:exon:2725;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 28813 | 28905 | 28813 | ID=Msa1340550-mRNA-1:exon:2726;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 29460 | 29624 | 29460 | ID=Msa1340550-mRNA-1:exon:2727;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 30005 | 30096 | 30005 | ID=Msa1340550-mRNA-1:exon:2728;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 30561 | 30742 | 30561 | ID=Msa1340550-mRNA-1:exon:2729;Parent=Msa1340550-mRNA-1 |
| tig0004180 | exon | 31404 | 31934 | 31404 | ID=Msa1340550-mRNA-1:exon:2730;Parent=Msa1340550-mRNA-1 |
| tig0004180 | five_prime_UTR | 27175 | 27229 | 27175 | ID=Msa1340550-mRNA-1:five_prime_utr;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 27230 | 27395 | 27230 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 27825 | 28047 | 27825 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 28147 | 28304 | 28147 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 28415 | 28560 | 28415 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 28651 | 28713 | 28651 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 28813 | 28905 | 28813 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 29460 | 29624 | 29460 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 30005 | 30096 | 30005 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 30561 | 30742 | 30561 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | CDS | 31404 | 31717 | 31404 | ID=Msa1340550-mRNA-1:cds;Parent=Msa1340550-mRNA-1 |
| tig0004180 | three_prime_UTR | 31718 | 31934 | 31718 | ID=Msa1340550-mRNA-1:three_prime_utr;Parent=Msa1340550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
