Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120280 | XP_013467977.1 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120280 | sp|Q9FVS1|FBK23_ARATH | 44.706 | 340 | 179 | 5 | 36 | 371 | 13 | 347 | 1.28e-97 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120280 | I3SWK4 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 779 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0120280 | 0.866654 | 2.434872e-65 | -8.615850e-47 |
| Msa0024400 | Msa0120280 | 0.963818 | 1.489753e-122 | -8.615850e-47 |
| Msa0054530 | Msa0120280 | 0.821439 | 4.034870e-53 | -8.615850e-47 |
| Msa0072720 | Msa0120280 | 0.855078 | 8.029156e-62 | -8.615850e-47 |
| Msa0089980 | Msa0120280 | 0.836179 | 1.089197e-56 | -8.615850e-47 |
| Msa0090010 | Msa0120280 | 0.834053 | 3.744036e-56 | -8.615850e-47 |
| Msa0091730 | Msa0120280 | 0.824710 | 6.964637e-54 | -8.615850e-47 |
| Msa0106620 | Msa0120280 | 0.807517 | 4.862783e-50 | -8.615850e-47 |
| Msa0120280 | Msa0120990 | 0.824394 | 8.268239e-54 | -8.615850e-47 |
| Msa0120280 | Msa0122530 | 0.823250 | 1.532245e-53 | -8.615850e-47 |
| Msa0120280 | Msa0138360 | 0.833876 | 4.144508e-56 | -8.615850e-47 |
| Msa0120280 | Msa0147980 | 0.839841 | 1.244646e-57 | -8.615850e-47 |
| Msa0120280 | Msa0163510 | 0.964025 | 8.255619e-123 | -8.615850e-47 |
| Msa0120280 | Msa0171870 | 0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0120280 | Msa0189530 | 0.814944 | 1.190381e-51 | -8.615850e-47 |
| Msa0120280 | Msa0192640 | 0.805799 | 1.121297e-49 | -8.615850e-47 |
| Msa0120280 | Msa0194920 | 0.820083 | 8.273069e-53 | -8.615850e-47 |
| Msa0120280 | Msa0204960 | 0.802648 | 5.077444e-49 | -8.615850e-47 |
| Msa0120280 | Msa0215990 | 0.814979 | 1.168846e-51 | -8.615850e-47 |
| Msa0120280 | Msa0217670 | 0.889785 | 1.774586e-73 | -8.615850e-47 |
| Msa0120280 | Msa0223330 | 0.806055 | 9.905177e-50 | -8.615850e-47 |
| Msa0120280 | Msa0223340 | 0.802556 | 5.304049e-49 | -8.615850e-47 |
| Msa0120280 | Msa0225620 | 0.821559 | 3.786167e-53 | -8.615850e-47 |
| Msa0120280 | Msa0227190 | 0.808468 | 3.051628e-50 | -8.615850e-47 |
| Msa0120280 | Msa0231800 | 0.828514 | 8.618723e-55 | -8.615850e-47 |
| Msa0120280 | Msa0237200 | 0.818798 | 1.623992e-52 | -8.615850e-47 |
| Msa0120280 | Msa0237300 | 0.869022 | 4.227843e-66 | -8.615850e-47 |
| Msa0120280 | Msa0241830 | 0.809025 | 2.320285e-50 | -8.615850e-47 |
| Msa0120280 | Msa0257490 | 0.850664 | 1.467366e-60 | -8.615850e-47 |
| Msa0120280 | Msa0264840 | 0.833777 | 4.388880e-56 | -8.615850e-47 |
| Msa0120280 | Msa0267920 | 0.801428 | 9.044865e-49 | -8.615850e-47 |
| Msa0120280 | Msa0271350 | 0.818360 | 2.041031e-52 | -8.615850e-47 |
| Msa0120280 | Msa0274720 | 0.866192 | 3.413547e-65 | -8.615850e-47 |
| Msa0120280 | Msa0274970 | 0.816600 | 5.085744e-52 | -8.615850e-47 |
| Msa0120280 | Msa0279850 | 0.808706 | 2.714557e-50 | -8.615850e-47 |
| Msa0120280 | Msa0296790 | 0.876097 | 1.830163e-68 | -8.615850e-47 |
| Msa0120280 | Msa0302570 | 0.831612 | 1.512523e-55 | -8.615850e-47 |
| Msa0120280 | Msa0315520 | 0.861353 | 1.089275e-63 | -8.615850e-47 |
| Msa0120280 | Msa0315680 | 0.820056 | 8.389206e-53 | -8.615850e-47 |
| Msa0120280 | Msa0317970 | 0.809262 | 2.064484e-50 | -8.615850e-47 |
| Msa0120280 | Msa0320590 | 0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0120280 | Msa0322900 | 0.808443 | 3.089630e-50 | -8.615850e-47 |
| Msa0120280 | Msa0340330 | 0.823521 | 1.324478e-53 | -8.615850e-47 |
| Msa0120280 | Msa0358400 | 0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0120280 | Msa0362890 | 0.832225 | 1.067207e-55 | -8.615850e-47 |
| Msa0120280 | Msa0363060 | 0.813986 | 1.938943e-51 | -8.615850e-47 |
| Msa0120280 | Msa0376630 | 0.809339 | 1.986900e-50 | -8.615850e-47 |
| Msa0120280 | Msa0377820 | 0.801045 | 1.083654e-48 | -8.615850e-47 |
| Msa0120280 | Msa0382370 | 0.852655 | 4.003649e-61 | -8.615850e-47 |
| Msa0120280 | Msa0385500 | 0.819480 | 1.136353e-52 | -8.615850e-47 |
| Msa0120280 | Msa0385830 | 0.800193 | 1.616251e-48 | -8.615850e-47 |
| Msa0120280 | Msa0395980 | 0.840951 | 6.381903e-58 | -8.615850e-47 |
| Msa0120280 | Msa0416960 | 0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0120280 | Msa0432160 | 0.865705 | 4.863422e-65 | -8.615850e-47 |
| Msa0120280 | Msa0439960 | 0.859021 | 5.514712e-63 | -8.615850e-47 |
| Msa0120280 | Msa0440510 | 0.840531 | 8.219806e-58 | -8.615850e-47 |
| Msa0120280 | Msa0450400 | -0.802915 | 4.472184e-49 | -8.615850e-47 |
| Msa0120280 | Msa0468250 | 0.821068 | 4.914840e-53 | -8.615850e-47 |
| Msa0120280 | Msa0472930 | 0.800225 | 1.592587e-48 | -8.615850e-47 |
| Msa0120280 | Msa0476680 | 0.859908 | 2.986212e-63 | -8.615850e-47 |
| Msa0120280 | Msa0491000 | 0.851062 | 1.133581e-60 | -8.615850e-47 |
| Msa0120280 | Msa0515340 | 0.805246 | 1.464166e-49 | -8.615850e-47 |
| Msa0120280 | Msa0515710 | 0.817037 | 4.057891e-52 | -8.615850e-47 |
| Msa0120280 | Msa0521010 | 0.854960 | 8.690722e-62 | -8.615850e-47 |
| Msa0120280 | Msa0527190 | 0.835383 | 1.732894e-56 | -8.615850e-47 |
| Msa0120280 | Msa0527540 | 0.819958 | 8.834849e-53 | -8.615850e-47 |
| Msa0120280 | Msa0531250 | 0.801769 | 7.701016e-49 | -8.615850e-47 |
| Msa0120280 | Msa0553200 | 0.804484 | 2.112559e-49 | -8.615850e-47 |
| Msa0120280 | Msa0597770 | 0.801867 | 7.352683e-49 | -8.615850e-47 |
| Msa0120280 | Msa0607320 | 0.844349 | 7.989390e-59 | -8.615850e-47 |
| Msa0120280 | Msa0620230 | 0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0120280 | Msa0623990 | 0.823662 | 1.227539e-53 | -8.615850e-47 |
| Msa0120280 | Msa0624060 | 0.818408 | 1.991351e-52 | -8.615850e-47 |
| Msa0120280 | Msa0624680 | 0.818287 | 2.120952e-52 | -8.615850e-47 |
| Msa0120280 | Msa0626270 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0120280 | Msa0628420 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
| Msa0120280 | Msa0629240 | 0.807408 | 5.130197e-50 | -8.615850e-47 |
| Msa0120280 | Msa0647430 | 0.848645 | 5.372073e-60 | -8.615850e-47 |
| Msa0120280 | Msa0651560 | 0.862403 | 5.194632e-64 | -8.615850e-47 |
| Msa0120280 | Msa0676130 | 0.816223 | 6.178980e-52 | -8.615850e-47 |
| Msa0120280 | Msa0676180 | 0.813138 | 2.978633e-51 | -8.615850e-47 |
| Msa0120280 | Msa0690310 | 0.853024 | 3.140533e-61 | -8.615850e-47 |
| Msa0120280 | Msa0693330 | 0.817931 | 2.552626e-52 | -8.615850e-47 |
| Msa0120280 | Msa0702720 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0120280 | Msa0743530 | 0.813414 | 2.590887e-51 | -8.615850e-47 |
| Msa0120280 | Msa0756380 | 0.817598 | 3.035072e-52 | -8.615850e-47 |
| Msa0120280 | Msa0789560 | 0.843458 | 1.384458e-58 | -8.615850e-47 |
| Msa0120280 | Msa0819490 | 0.800565 | 1.357835e-48 | -8.615850e-47 |
| Msa0120280 | Msa0828250 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0120280 | Msa0833530 | 0.803892 | 2.805535e-49 | -8.615850e-47 |
| Msa0120280 | Msa0855870 | 0.818220 | 2.196038e-52 | -8.615850e-47 |
| Msa0120280 | Msa0880450 | 0.820053 | 8.405928e-53 | -8.615850e-47 |
| Msa0120280 | Msa0898660 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0120280 | Msa0903780 | 0.806651 | 7.417329e-50 | -8.615850e-47 |
| Msa0120280 | Msa0910960 | 0.829214 | 5.834683e-55 | -8.615850e-47 |
| Msa0120280 | Msa0965290 | 0.801944 | 7.089173e-49 | -8.615850e-47 |
| Msa0120280 | Msa0985180 | 0.803870 | 2.836128e-49 | -8.615850e-47 |
| Msa0120280 | Msa0985220 | 0.815122 | 1.086847e-51 | -8.615850e-47 |
| Msa0120280 | Msa0992510 | 0.826925 | 2.075317e-54 | -8.615850e-47 |
| Msa0120280 | Msa0998590 | 0.805264 | 1.451769e-49 | -8.615850e-47 |
| Msa0120280 | Msa0999680 | 0.802934 | 4.432961e-49 | -8.615850e-47 |
| Msa0120280 | Msa1002960 | 0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0120280 | Msa1034500 | 0.817070 | 3.989723e-52 | -8.615850e-47 |
| Msa0120280 | Msa1036300 | 0.819901 | 9.102510e-53 | -8.615850e-47 |
| Msa0120280 | Msa1037510 | 0.809578 | 1.765920e-50 | -8.615850e-47 |
| Msa0120280 | Msa1037520 | 0.836528 | 8.879259e-57 | -8.615850e-47 |
| Msa0120280 | Msa1047760 | 0.816042 | 6.778854e-52 | -8.615850e-47 |
| Msa0120280 | Msa1071050 | 0.810877 | 9.263674e-51 | -8.615850e-47 |
| Msa0120280 | Msa1075970 | 0.829239 | 5.753154e-55 | -8.615850e-47 |
| Msa0120280 | Msa1089450 | 0.816433 | 5.544570e-52 | -8.615850e-47 |
| Msa0120280 | Msa1118450 | 0.802369 | 5.798030e-49 | -8.615850e-47 |
| Msa0120280 | Msa1123350 | 0.803570 | 3.273009e-49 | -8.615850e-47 |
| Msa0120280 | Msa1130400 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0120280 | Msa1133590 | 0.873600 | 1.297189e-67 | -8.615850e-47 |
| Msa0120280 | Msa1159020 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0120280 | Msa1161480 | 0.821422 | 4.072897e-53 | -8.615850e-47 |
| Msa0120280 | Msa1211340 | 0.816979 | 4.181325e-52 | -8.615850e-47 |
| Msa0120280 | Msa1213040 | 0.800773 | 1.231567e-48 | -8.615850e-47 |
| Msa0120280 | Msa1226460 | 0.800119 | 1.673712e-48 | -8.615850e-47 |
| Msa0120280 | Msa1228040 | 0.863175 | 3.002524e-64 | -8.615850e-47 |
| Msa0120280 | Msa1252970 | 0.815838 | 7.529603e-52 | -8.615850e-47 |
| Msa0120280 | Msa1259640 | 0.817935 | 2.546814e-52 | -8.615850e-47 |
| Msa0120280 | Msa1260220 | 0.812671 | 3.770468e-51 | -8.615850e-47 |
| Msa0120280 | Msa1271130 | 0.836506 | 8.991419e-57 | -8.615850e-47 |
| Msa0120280 | Msa1292020 | 0.877141 | 7.969980e-69 | -8.615850e-47 |
| Msa0120280 | Msa1297530 | 0.809382 | 1.944820e-50 | -8.615850e-47 |
| Msa0120280 | Msa1308220 | 0.822704 | 2.054682e-53 | -8.615850e-47 |
| Msa0120280 | Msa1327640 | 0.872748 | 2.505062e-67 | -8.615850e-47 |
| Msa0120280 | Msa1329790 | 0.817711 | 2.861584e-52 | -8.615850e-47 |
| Msa0120280 | Msa1340200 | 0.812563 | 3.981349e-51 | -8.615850e-47 |
| Msa0120280 | Msa1340550 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
| Msa0120280 | Msa1371520 | 0.826408 | 2.758109e-54 | -8.615850e-47 |
| Msa0120280 | Msa1373820 | 0.804364 | 2.238766e-49 | -8.615850e-47 |
| Msa0120280 | Msa1373850 | 0.867989 | 9.111165e-66 | -8.615850e-47 |
| Msa0120280 | Msa1378410 | 0.824595 | 7.411386e-54 | -8.615850e-47 |
| Msa0120280 | Msa1380900 | 0.800382 | 1.479302e-48 | -8.615850e-47 |
| Msa0120280 | Msa1393820 | 0.832695 | 8.162696e-56 | -8.615850e-47 |
| Msa0120280 | Msa1411950 | 0.808231 | 3.427873e-50 | -8.615850e-47 |
| Msa0120280 | Msa1414820 | 0.962755 | 2.946498e-121 | -8.615850e-47 |
| Msa0120280 | Msa1420120 | 0.862777 | 3.984661e-64 | -8.615850e-47 |
| Msa0120280 | Msa1425120 | 0.835910 | 1.274070e-56 | -8.615850e-47 |
| Msa0120280 | Msa1433700 | 0.868466 | 6.394459e-66 | -8.615850e-47 |
| Msa0120280 | Msa1446080 | 0.803716 | 3.052349e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120280 | MtrunA17_Chr1g0178491 | 99.468 | 376 | 2 | 0 | 1 | 376 | 1 | 376 | 0.0 | 779 |
| Msa0120280 | MtrunA17_Chr7g0266441 | 64.187 | 363 | 119 | 6 | 19 | 374 | 17 | 375 | 5.23e-165 | 466 |
| Msa0120280 | MtrunA17_Chr7g0266431 | 64.737 | 190 | 65 | 2 | 185 | 373 | 2 | 190 | 3.40e-83 | 251 |
| Msa0120280 | MtrunA17_Chr7g0266421 | 67.857 | 84 | 27 | 0 | 19 | 102 | 13 | 96 | 5.07e-35 | 125 |
| Msa0120280 | MtrunA17_Chr2g0286361 | 32.195 | 205 | 114 | 7 | 114 | 306 | 4 | 195 | 3.25e-22 | 94.7 |
| Msa0120280 | MtrunA17_Chr2g0283611 | 28.070 | 171 | 114 | 4 | 34 | 198 | 13 | 180 | 1.01e-13 | 71.2 |
| Msa0120280 | MtrunA17_Chr3g0143621 | 21.574 | 343 | 207 | 11 | 36 | 327 | 24 | 355 | 6.93e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0120280 | AT1G57790.1 | 44.706 | 340 | 179 | 5 | 36 | 371 | 13 | 347 | 1.30e-98 | 297 |
| Msa0120280 | AT3G56470.1 | 43.860 | 342 | 178 | 4 | 34 | 372 | 27 | 357 | 1.14e-95 | 290 |
| Msa0120280 | AT4G00893.1 | 42.700 | 363 | 194 | 7 | 17 | 371 | 26 | 382 | 2.94e-95 | 290 |
| Msa0120280 | AT4G12370.1 | 44.702 | 302 | 155 | 6 | 83 | 375 | 1 | 299 | 1.98e-81 | 251 |
| Msa0120280 | AT4G10660.1 | 42.997 | 307 | 160 | 5 | 70 | 364 | 9 | 312 | 4.31e-78 | 243 |
| Msa0120280 | AT1G49360.3 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.24e-63 | 207 |
| Msa0120280 | AT1G49360.2 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.24e-63 | 207 |
| Msa0120280 | AT1G49360.4 | 36.712 | 365 | 187 | 15 | 39 | 373 | 8 | 358 | 3.24e-63 | 207 |
| Msa0120280 | AT1G49360.1 | 36.712 | 365 | 187 | 15 | 39 | 373 | 111 | 461 | 1.06e-62 | 208 |
| Msa0120280 | AT1G49360.5 | 36.712 | 365 | 187 | 15 | 39 | 373 | 88 | 438 | 1.07e-62 | 207 |
| Msa0120280 | AT3G18720.1 | 36.390 | 349 | 182 | 11 | 39 | 371 | 52 | 376 | 1.27e-56 | 190 |
| Msa0120280 | AT4G10695.2 | 40.265 | 226 | 131 | 2 | 48 | 269 | 1 | 226 | 8.69e-55 | 180 |
| Msa0120280 | AT4G10695.1 | 40.265 | 226 | 131 | 2 | 48 | 269 | 1 | 226 | 8.69e-55 | 180 |
| Msa0120280 | AT4G12382.1 | 47.619 | 126 | 66 | 0 | 35 | 160 | 9 | 134 | 2.60e-39 | 137 |
| Msa0120280 | AT4G12382.2 | 47.619 | 126 | 66 | 0 | 35 | 160 | 9 | 134 | 2.60e-39 | 137 |
| Msa0120280 | AT4G10700.1 | 47.934 | 121 | 56 | 2 | 255 | 369 | 119 | 238 | 1.42e-28 | 112 |
| Msa0120280 | AT4G10700.1 | 43.373 | 83 | 47 | 0 | 69 | 151 | 8 | 90 | 3.60e-20 | 89.4 |
| Msa0120280 | AT2G44735.1 | 43.396 | 159 | 79 | 7 | 136 | 287 | 110 | 264 | 4.38e-28 | 113 |
| Msa0120280 | AT4G22035.1 | 32.800 | 125 | 79 | 3 | 35 | 155 | 12 | 135 | 1.82e-11 | 63.9 |
| Msa0120280 | AT4G22660.1 | 31.783 | 129 | 72 | 3 | 34 | 150 | 8 | 132 | 6.45e-11 | 63.9 |
Find 111 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACACATTACTGATTT+TGG | 0.040084 | 1_3:+44934017 | None:intergenic |
| TCATACCACTGACCAAATTT+TGG | 0.144092 | 1_3:+44934920 | None:intergenic |
| AGCTTTGTTGACATTTAATT+TGG | 0.199386 | 1_3:-44931852 | Msa0120280:three_prime_UTR |
| TGGTCTAACTTGAAAATAAT+AGG | 0.240703 | 1_3:+44934338 | None:intergenic |
| AGAGGTGGAAAATGATAATT+TGG | 0.262706 | 1_3:-44935104 | Msa0120280:CDS |
| TTGATAGTCTCCCGAGTAAA+AGG | 0.263964 | 1_3:+44934764 | None:intergenic |
| CATATCTCGTTTAGCCTTAG+AGG | 0.269854 | 1_3:-44935035 | Msa0120280:CDS |
| ATGTTTGATTTGGTTATATA+GGG | 0.278653 | 1_3:+44931633 | None:intergenic |
| AGTTCCTAGTTATCTCTCTT+TGG | 0.284498 | 1_3:-44932116 | Msa0120280:three_prime_UTR |
| TGCCGAAGGCAGCATCTTTA+CGG | 0.292948 | 1_3:-44932056 | Msa0120280:three_prime_UTR |
| AATGTTTGATTTGGTTATAT+AGG | 0.303054 | 1_3:+44931632 | None:intergenic |
| TGACAAAAGGCAGACGGTTT+TGG | 0.312961 | 1_3:+44934585 | None:intergenic |
| AAGAATACTAATGTTTGATT+TGG | 0.320130 | 1_3:+44931623 | None:intergenic |
| GTTCATTAGTTAAGCTCATT+TGG | 0.324864 | 1_3:-44932084 | Msa0120280:three_prime_UTR |
| GTTTCTTGTCTTCTCATTCA+AGG | 0.344326 | 1_3:-44934259 | Msa0120280:CDS |
| GGTCTAACTTGAAAATAATA+GGG | 0.354290 | 1_3:+44934339 | None:intergenic |
| GGCTGCATAAATTTGATGTT+TGG | 0.356014 | 1_3:-44931723 | Msa0120280:three_prime_UTR |
| GCCGAAGGCAGCATCTTTAC+GGG | 0.359572 | 1_3:-44932055 | Msa0120280:three_prime_UTR |
| CTCGTAAGCAGTGGCATGAC+TGG | 0.366506 | 1_3:-44934133 | Msa0120280:CDS |
| AATCTATAGATTTATATAGA+TGG | 0.384207 | 1_3:-44931823 | Msa0120280:three_prime_UTR |
| TCAATCCATATGCTTTCAAA+AGG | 0.390242 | 1_3:+44934098 | None:intergenic |
| ATCATTTCTAATAGTTCAGC+AGG | 0.392094 | 1_3:+44935058 | None:intergenic |
| AGCACGGACATTGTCCTCTA+AGG | 0.396495 | 1_3:+44935021 | None:intergenic |
| ATTGAGTTTCCTGAGTTGAA+TGG | 0.407380 | 1_3:-44934863 | Msa0120280:CDS |
| GCCATCAGCACATGTCACCC+TGG | 0.425844 | 1_3:-44934635 | Msa0120280:CDS |
| GCCCGTAAAGATGCTGCCTT+CGG | 0.427482 | 1_3:+44932054 | None:intergenic |
| CACAAGAGAACGCAACTATC+TGG | 0.427646 | 1_3:+44934717 | None:intergenic |
| CTGAGTCTAACGGGTTGGCT+AGG | 0.428305 | 1_3:-44934515 | Msa0120280:CDS |
| AGAGTTTGTTACACAAAAGA+TGG | 0.432818 | 1_3:-44934836 | Msa0120280:CDS |
| GCTTATATATGCAGAACAAT+TGG | 0.435526 | 1_3:-44931905 | Msa0120280:three_prime_UTR |
| CAAGTTAGACCAGGCCTCAA+TGG | 0.439625 | 1_3:-44934327 | Msa0120280:CDS |
| GAATAGGTCCTCCGCTGCAC+AGG | 0.439702 | 1_3:+44934887 | None:intergenic |
| CTTCTGCGGTTTGCAAGAGT+TGG | 0.446022 | 1_3:-44935000 | Msa0120280:CDS |
| CTTCCCATTCCATTGAGGCC+TGG | 0.447033 | 1_3:+44934318 | None:intergenic |
| TGAGTCTAACGGGTTGGCTA+GGG | 0.453281 | 1_3:-44934514 | Msa0120280:CDS |
| CTCAGGAAACTCAATGGAAT+AGG | 0.455431 | 1_3:+44934871 | None:intergenic |
| TTCTCTGGGCATTTGGGTGG+AGG | 0.456945 | 1_3:+44934449 | None:intergenic |
| CATTCAAGGACTGACCTCCT+TGG | 0.460684 | 1_3:-44934245 | Msa0120280:CDS |
| AATACATCAACCATGGTGAT+TGG | 0.465857 | 1_3:+44934945 | None:intergenic |
| CATCAATTTCGCATAATGTC+AGG | 0.471424 | 1_3:-44935950 | Msa0120280:exon |
| TTGATCCATCTGAACGCACT+TGG | 0.477811 | 1_3:-44934487 | Msa0120280:CDS |
| TGGTATGTCATCTCAAATCT+TGG | 0.481609 | 1_3:+44934737 | None:intergenic |
| AATAAGCTTGTGTTCTGTAA+TGG | 0.484684 | 1_3:-44934551 | Msa0120280:CDS |
| GTGCTGATGGCCACAATAGT+AGG | 0.487396 | 1_3:+44934647 | None:intergenic |
| TTCCATATGCTACTGACAAA+AGG | 0.491994 | 1_3:+44934572 | None:intergenic |
| CCATCAGCACATGTCACCCT+GGG | 0.492069 | 1_3:-44934634 | Msa0120280:CDS |
| CACACCAAAGAGAGATAACT+AGG | 0.497508 | 1_3:+44932112 | None:intergenic |
| AGACCAGGCCTCAATGGAAT+GGG | 0.506121 | 1_3:-44934321 | Msa0120280:CDS |
| CAGCAGAGACATGATAATCA+AGG | 0.506814 | 1_3:+44931969 | None:intergenic |
| ATGGTTGGTTACTGCTATAC+CGG | 0.507693 | 1_3:-44934817 | Msa0120280:CDS |
| TAGCTCTTCCCATTCCATTG+AGG | 0.512554 | 1_3:+44934313 | None:intergenic |
| CCCAGGGTGACATGTGCTGA+TGG | 0.513422 | 1_3:+44934634 | None:intergenic |
| GTTCACCATGCGTACAGCAT+TGG | 0.515987 | 1_3:+44934967 | None:intergenic |
| TCGTAAGCAGTGGCATGACT+GGG | 0.517661 | 1_3:-44934132 | Msa0120280:CDS |
| ATTCAACTCAGGAAACTCAA+TGG | 0.520817 | 1_3:+44934865 | None:intergenic |
| TAGACCAGGCCTCAATGGAA+TGG | 0.520927 | 1_3:-44934322 | Msa0120280:CDS |
| ACAGTGAACAATACACAGTC+AGG | 0.522970 | 1_3:+44934683 | None:intergenic |
| ATAATTTGGAGCTGCAAACA+TGG | 0.524692 | 1_3:-44935090 | Msa0120280:CDS |
| ACGCTCCAAGTGCGTTCAGA+TGG | 0.530295 | 1_3:+44934482 | None:intergenic |
| CTGACCTCCTTGGAAATATG+AGG | 0.530915 | 1_3:-44934235 | Msa0120280:CDS |
| CAATCCATATGCTTTCAAAA+GGG | 0.538554 | 1_3:+44934099 | None:intergenic |
| TTTGTTACACAAAAGATGGT+TGG | 0.543077 | 1_3:-44934832 | Msa0120280:CDS |
| TATAACATCTCCCTCTTGCT+CGG | 0.543615 | 1_3:+44934388 | None:intergenic |
| AAGCACCACTTCGCTATGCA+TGG | 0.547693 | 1_3:+44931924 | None:intergenic |
| GTGACCCACTCAGTTGCCCC+AGG | 0.548400 | 1_3:+44934617 | None:intergenic |
| AATACACAGTCAGGTGATGT+TGG | 0.549189 | 1_3:+44934692 | None:intergenic |
| CAGAAGAGAAGCAACAGAGG+TGG | 0.554810 | 1_3:-44935119 | Msa0120280:CDS |
| ATTGCCTGAGTCTAACGGGT+TGG | 0.555672 | 1_3:-44934520 | Msa0120280:CDS |
| GCATGTTAGTCCTACTATTG+TGG | 0.555933 | 1_3:-44934657 | Msa0120280:CDS |
| TACTGTTCCTCATATTTCCA+AGG | 0.557830 | 1_3:+44934228 | None:intergenic |
| AAGGCAGCATCTTTACGGGC+GGG | 0.561507 | 1_3:-44932051 | Msa0120280:three_prime_UTR |
| AAATTCTCTGGGCATTTGGG+TGG | 0.572307 | 1_3:+44934446 | None:intergenic |
| AAACCCAGACATAAAATGAA+AGG | 0.578262 | 1_3:+44931793 | None:intergenic |
| ACACTCGATCAGTTCTTGGC+CGG | 0.582893 | 1_3:+44934798 | None:intergenic |
| GAAATTTATGACCGAGCAAG+AGG | 0.585940 | 1_3:-44934399 | Msa0120280:CDS |
| TCACCCTGGGGCAACTGAGT+GGG | 0.589444 | 1_3:-44934621 | Msa0120280:CDS |
| CCCAGACATAAAATGAAAGG+TGG | 0.594347 | 1_3:+44931796 | None:intergenic |
| CAGTCATGCCACTGCTTACG+AGG | 0.597324 | 1_3:+44934134 | None:intergenic |
| CTCATTTGGAAGCATGCCGA+AGG | 0.599268 | 1_3:-44932070 | Msa0120280:three_prime_UTR |
| GTCACCCTGGGGCAACTGAG+TGG | 0.599763 | 1_3:-44934622 | Msa0120280:CDS |
| CTAGCCAACCCGTTAGACTC+AGG | 0.605339 | 1_3:+44934516 | None:intergenic |
| ACTCTAGATCCATTCAACTC+AGG | 0.606054 | 1_3:+44934854 | None:intergenic |
| TTAAGAAAGAGAGAACGAAG+TGG | 0.607026 | 1_3:+44935991 | None:intergenic |
| TTTGGAAAATACATCAACCA+TGG | 0.609449 | 1_3:+44934938 | None:intergenic |
| AATAGGTCCTCCGCTGCACA+GGG | 0.610369 | 1_3:+44934888 | None:intergenic |
| CCAAAATCAGTAATGTGTAG+AGG | 0.611064 | 1_3:-44934017 | Msa0120280:intron |
| TGAATCTGATGCTAAAGACT+AGG | 0.611228 | 1_3:-44931994 | Msa0120280:three_prime_UTR |
| CATATGGATTGAACCACCAA+AGG | 0.612060 | 1_3:-44934087 | Msa0120280:CDS |
| TCTTGCAAACCGCAGAAGCA+CGG | 0.620256 | 1_3:+44935005 | None:intergenic |
| GAGTCTAACGGGTTGGCTAG+GGG | 0.622563 | 1_3:-44934513 | Msa0120280:CDS |
| TCTATGACCCTGTGCAGCGG+AGG | 0.622795 | 1_3:-44934895 | Msa0120280:CDS |
| GAAGGCAGCATCTTTACGGG+CGG | 0.624480 | 1_3:-44932052 | Msa0120280:three_prime_UTR |
| GAGCAGAAGAGAAGCAACAG+AGG | 0.625517 | 1_3:-44935122 | Msa0120280:CDS |
| AGCAGAGACATGATAATCAA+GGG | 0.627265 | 1_3:+44931970 | None:intergenic |
| AGGAGGCTACTTATATGTGA+AGG | 0.630780 | 1_3:-44932020 | Msa0120280:three_prime_UTR |
| GGACAATGTCCGTGCTTCTG+CGG | 0.633574 | 1_3:-44935014 | Msa0120280:CDS |
| AAGAGAGAAATGACAGCACG+TGG | 0.640022 | 1_3:+44936032 | None:intergenic |
| TGCTACTGACAAAAGGCAGA+CGG | 0.641521 | 1_3:+44934579 | None:intergenic |
| TGACCCACTCAGTTGCCCCA+GGG | 0.643613 | 1_3:+44934618 | None:intergenic |
| AATTCTATGACCCTGTGCAG+CGG | 0.644847 | 1_3:-44934898 | Msa0120280:CDS |
| TGTTGCCAATGCTGTACGCA+TGG | 0.644907 | 1_3:-44934972 | Msa0120280:CDS |
| AAATTTATGACCGAGCAAGA+GGG | 0.650243 | 1_3:-44934398 | Msa0120280:CDS |
| GCTACTATCCTCGTAAGCAG+TGG | 0.662398 | 1_3:-44934142 | Msa0120280:CDS |
| ACGGGCGGGATGTACGTAGG+AGG | 0.673229 | 1_3:-44932037 | Msa0120280:three_prime_UTR |
| CGTAAGCAGTGGCATGACTG+GGG | 0.674467 | 1_3:-44934131 | Msa0120280:CDS |
| TTTACGGGCGGGATGTACGT+AGG | 0.677649 | 1_3:-44932040 | Msa0120280:three_prime_UTR |
| TGTTCCTCATATTTCCAAGG+AGG | 0.678301 | 1_3:+44934231 | None:intergenic |
| TAATTTGGAGCTGCAAACAT+GGG | 0.684242 | 1_3:-44935089 | Msa0120280:CDS |
| TCATTTCTAATAGTTCAGCA+GGG | 0.696179 | 1_3:+44935059 | None:intergenic |
| CATCAGCACATGTCACCCTG+GGG | 0.702309 | 1_3:-44934633 | Msa0120280:CDS |
| GCATGGTGAACCAATCACCA+TGG | 0.715864 | 1_3:-44934955 | Msa0120280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTATTCACAAT+TGG | - | chr1_3:44932319-44932338 | Msa0120280:intron | 10.0% |
| !!! | TTTTTTTTTTATTCACAATT+GGG | - | chr1_3:44932320-44932339 | Msa0120280:intron | 10.0% |
| !!! | TTTTATTCTATTTCATTTTT+TGG | - | chr1_3:44935869-44935888 | Msa0120280:intron | 10.0% |
| !!! | GAATTAAACTAAATTAGTTT+AGG | - | chr1_3:44932076-44932095 | Msa0120280:three_prime_UTR | 15.0% |
| !! | AGATGTTACAAAAAAATATA+CGG | + | chr1_3:44934073-44934092 | None:intergenic | 15.0% |
| !! | TAGTATGTAACAATAATATT+TGG | + | chr1_3:44934284-44934303 | None:intergenic | 15.0% |
| !! | AATCTATAGATTTATATAGA+TGG | - | chr1_3:44935802-44935821 | Msa0120280:intron | 15.0% |
| !! | TAAACTAAATGTGTGAAAAT+TGG | - | chr1_3:44931802-44931821 | Msa0120280:three_prime_UTR | 20.0% |
| !! | AAACTAAATGTGTGAAAATT+GGG | - | chr1_3:44931803-44931822 | Msa0120280:three_prime_UTR | 20.0% |
| !!! | TTGATGTATTTTCCAAAATT+TGG | - | chr1_3:44932693-44932712 | Msa0120280:intron | 20.0% |
| !!! | TTTTCTTTAATCCTTTTACT+CGG | - | chr1_3:44932850-44932869 | Msa0120280:intron | 20.0% |
| !!! | AGAATTTTTTCGCAAAAAAT+TGG | - | chr1_3:44933195-44933214 | Msa0120280:intron | 20.0% |
| !!! | AAGAATTTTAGTGAAACAAA+TGG | - | chr1_3:44933580-44933599 | Msa0120280:intron | 20.0% |
| !! | TAACAAGAAGTTATAAAACA+AGG | + | chr1_3:44933658-44933677 | None:intergenic | 20.0% |
| !! | TTATTCTTATGCTAAGTTAT+AGG | - | chr1_3:44933831-44933850 | Msa0120280:intron | 20.0% |
| !!! | CATATTTCTGAGTTTAATTT+TGG | + | chr1_3:44934018-44934037 | None:intergenic | 20.0% |
| !!! | TTCATTTACAACTCTAAAAA+AGG | - | chr1_3:44934039-44934058 | Msa0120280:three_prime_UTR | 20.0% |
| !!! | TTGATTTTACATGAATAATC+AGG | - | chr1_3:44934356-44934375 | Msa0120280:CDS | 20.0% |
| !! | ATTGTTTAATGTGAAATGAA+TGG | + | chr1_3:44934445-44934464 | None:intergenic | 20.0% |
| !! | AAAGAAGGAAAAATAACTAT+TGG | - | chr1_3:44934513-44934532 | Msa0120280:CDS | 20.0% |
| !! | AAGAAGGAAAAATAACTATT+GGG | - | chr1_3:44934514-44934533 | Msa0120280:CDS | 20.0% |
| !! | AAACTATAGGAGAAATTATT+AGG | - | chr1_3:44934701-44934720 | Msa0120280:CDS | 20.0% |
| !!! | CTTAATGCATTTTGTAATTT+TGG | - | chr1_3:44934943-44934962 | Msa0120280:CDS | 20.0% |
| !!! | ATTTAGCAGATTTTTAAAGT+TGG | - | chr1_3:44935256-44935275 | Msa0120280:intron | 20.0% |
| !!! | ACTTATACCATTTTTTAACT+AGG | - | chr1_3:44935362-44935381 | Msa0120280:intron | 20.0% |
| !!! | CTTATACCATTTTTTAACTA+GGG | - | chr1_3:44935363-44935382 | Msa0120280:intron | 20.0% |
| !!! | ATGTTTGATTTGGTTATATA+GGG | + | chr1_3:44935995-44936014 | None:intergenic | 20.0% |
| !!! | AATGTTTGATTTGGTTATAT+AGG | + | chr1_3:44935996-44936015 | None:intergenic | 20.0% |
| !! | AAGAATACTAATGTTTGATT+TGG | + | chr1_3:44936005-44936024 | None:intergenic | 20.0% |
| !!! | TGAAAATTGGGTTTTAATGT+TGG | - | chr1_3:44931815-44931834 | Msa0120280:three_prime_UTR | 25.0% |
| !! | TTTATCACATTGATTGCATT+AGG | - | chr1_3:44931937-44931956 | Msa0120280:three_prime_UTR | 25.0% |
| !! | TTATCACATTGATTGCATTA+GGG | - | chr1_3:44931938-44931957 | Msa0120280:three_prime_UTR | 25.0% |
| !! | ACATATGACTTTTACATGAT+TGG | - | chr1_3:44932132-44932151 | Msa0120280:intron | 25.0% |
| ! | GATAACATAACATAACAACT+AGG | + | chr1_3:44932291-44932310 | None:intergenic | 25.0% |
| ! | ACATGCATTTCTGATTATTT+AGG | - | chr1_3:44932460-44932479 | Msa0120280:intron | 25.0% |
| !! | TTTCTTTAATCCTTTTACTC+GGG | - | chr1_3:44932851-44932870 | Msa0120280:intron | 25.0% |
| !! | TTTTTGCGAAAAAATTCTCT+GGG | + | chr1_3:44933193-44933212 | None:intergenic | 25.0% |
| !!! | TTTTTTGCGAAAAAATTCTC+TGG | + | chr1_3:44933194-44933213 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGCAAAAAATTGG+TGG | - | chr1_3:44933198-44933217 | Msa0120280:intron | 25.0% |
| ! | GGTCTAACTTGAAAATAATA+GGG | + | chr1_3:44933289-44933308 | None:intergenic | 25.0% |
| ! | TGGTCTAACTTGAAAATAAT+AGG | + | chr1_3:44933290-44933309 | None:intergenic | 25.0% |
| !!! | TATTATTTTCAAGTTAGACC+AGG | - | chr1_3:44933289-44933308 | Msa0120280:intron | 25.0% |
| !!! | TTCTCTAAAGTTCGTTTTTA+TGG | - | chr1_3:44933425-44933444 | Msa0120280:intron | 25.0% |
| ! | ATGCATAATAAGCTAGTATA+TGG | - | chr1_3:44933692-44933711 | Msa0120280:intron | 25.0% |
| !! | TAACAGTTCATCAACATTTT+TGG | - | chr1_3:44933741-44933760 | Msa0120280:intron | 25.0% |
| ! | TGTCATCTCATTATAATAGT+TGG | - | chr1_3:44933905-44933924 | Msa0120280:intron | 25.0% |
| !! | TACAAGAGCTTTTATGTAAA+AGG | + | chr1_3:44934147-44934166 | None:intergenic | 25.0% |
| ! | ATTTATTTAAGAGAGATGAC+TGG | - | chr1_3:44934305-44934324 | Msa0120280:CDS | 25.0% |
| ! | AGAAGGAAAAATAACTATTG+GGG | - | chr1_3:44934515-44934534 | Msa0120280:CDS | 25.0% |
| !!! | TTTTCTTGTTGTACAAAAGA+TGG | - | chr1_3:44934574-44934593 | Msa0120280:CDS | 25.0% |
| ! | AATCTATACAGATCAAACAA+TGG | + | chr1_3:44934783-44934802 | None:intergenic | 25.0% |
| ! | AACTTACAATGTTAAGAAGA+AGG | - | chr1_3:44934880-44934899 | Msa0120280:CDS | 25.0% |
| !! | ATAACAAAAACACAAGTTGA+CGG | - | chr1_3:44934903-44934922 | Msa0120280:CDS | 25.0% |
| ! | TACAAAATGCATTAAGAACT+CGG | + | chr1_3:44934939-44934958 | None:intergenic | 25.0% |
| ! | GAAGAAATTAACAATGACAA+GGG | - | chr1_3:44934965-44934984 | Msa0120280:CDS | 25.0% |
| !! | ACTAGATTTACAAATTTGCT+AGG | + | chr1_3:44935034-44935053 | None:intergenic | 25.0% |
| ! | GTTAAACTCAAAGTATAAGT+TGG | + | chr1_3:44935087-44935106 | None:intergenic | 25.0% |
| !! | ACTTATACTTTGAGTTTAAC+TGG | - | chr1_3:44935087-44935106 | Msa0120280:CDS | 25.0% |
| ! | AGAGGAAAATCTAAACAAAA+TGG | + | chr1_3:44935134-44935153 | None:intergenic | 25.0% |
| !! | TTTTATTCTTTGTACATCAG+AGG | + | chr1_3:44935176-44935195 | None:intergenic | 25.0% |
| !!! | AGCTTTGTTGACATTTAATT+TGG | - | chr1_3:44935773-44935792 | Msa0120280:intron | 25.0% |
| !!! | TTCATTTTTTGGTACAAAAG+AGG | - | chr1_3:44935880-44935899 | Msa0120280:intron | 25.0% |
| !!! | TCATTTTTTGGTACAAAAGA+GGG | - | chr1_3:44935881-44935900 | Msa0120280:intron | 25.0% |
| ATTGATTGCATTAGGGTTTA+TGG | - | chr1_3:44931945-44931964 | Msa0120280:three_prime_UTR | 30.0% | |
| AAACCAAGCTCATTAATTGA+TGG | - | chr1_3:44932202-44932221 | Msa0120280:intron | 30.0% | |
| AACCAAGCTCATTAATTGAT+GGG | - | chr1_3:44932203-44932222 | Msa0120280:intron | 30.0% | |
| ! | TTTTATTCACAATTGGGTAG+TGG | - | chr1_3:44932326-44932345 | Msa0120280:intron | 30.0% |
| AATGCTCTTAAAATGCAACA+AGG | + | chr1_3:44932413-44932432 | None:intergenic | 30.0% | |
| AGAGGTGGAAAATGATAATT+TGG | - | chr1_3:44932521-44932540 | Msa0120280:intron | 30.0% | |
| TCATTTCTAATAGTTCAGCA+GGG | + | chr1_3:44932569-44932588 | None:intergenic | 30.0% | |
| ATCATTTCTAATAGTTCAGC+AGG | + | chr1_3:44932570-44932589 | None:intergenic | 30.0% | |
| TTTGGAAAATACATCAACCA+TGG | + | chr1_3:44932690-44932709 | None:intergenic | 30.0% | |
| ! | ATTTTCCAAAATTTGGTCAG+TGG | - | chr1_3:44932700-44932719 | Msa0120280:intron | 30.0% |
| !! | AGAGTTTGTTACACAAAAGA+TGG | - | chr1_3:44932789-44932808 | Msa0120280:intron | 30.0% |
| TTTGTTACACAAAAGATGGT+TGG | - | chr1_3:44932793-44932812 | Msa0120280:intron | 30.0% | |
| AATAAGCTTGTGTTCTGTAA+TGG | - | chr1_3:44933074-44933093 | Msa0120280:intron | 30.0% | |
| AAAAAATTCTCTGGGCATTT+GGG | + | chr1_3:44933185-44933204 | None:intergenic | 30.0% | |
| CAATCCATATGCTTTCAAAA+GGG | + | chr1_3:44933529-44933548 | None:intergenic | 30.0% | |
| TCAATCCATATGCTTTCAAA+AGG | + | chr1_3:44933530-44933549 | None:intergenic | 30.0% | |
| !! | TAGAGGTATTTGTTATCACT+TGG | - | chr1_3:44933625-44933644 | Msa0120280:intron | 30.0% |
| ATAGTGTACAATAGTATGAG+TGG | + | chr1_3:44933870-44933889 | None:intergenic | 30.0% | |
| GTTATGACCAAAACTGAAAT+GGG | + | chr1_3:44934096-44934115 | None:intergenic | 30.0% | |
| AGTTATGACCAAAACTGAAA+TGG | + | chr1_3:44934097-44934116 | None:intergenic | 30.0% | |
| !! | GCTAGTCAGTATTTTTGAAA+TGG | - | chr1_3:44934170-44934189 | Msa0120280:CDS | 30.0% |
| !!! | TCAGTATTTTTGAAATGGCT+TGG | - | chr1_3:44934175-44934194 | Msa0120280:CDS | 30.0% |
| TAATATTTGGCAGTTTAACC+TGG | + | chr1_3:44934271-44934290 | None:intergenic | 30.0% | |
| AACCAAGAATAAGACATTCT+TGG | + | chr1_3:44934556-44934575 | None:intergenic | 30.0% | |
| AGATGGTTTAATCTCAACTT+AGG | - | chr1_3:44934591-44934610 | Msa0120280:CDS | 30.0% | |
| GACATGTAGATTCTATAGTA+TGG | - | chr1_3:44934636-44934655 | Msa0120280:CDS | 30.0% | |
| GGAAAGGAAAGAAAAACTAT+AGG | - | chr1_3:44934688-44934707 | Msa0120280:CDS | 30.0% | |
| AATTATTAGGAAAGACCTGA+AGG | - | chr1_3:44934714-44934733 | Msa0120280:CDS | 30.0% | |
| TGTATAGATTATTCCACCTA+AGG | - | chr1_3:44934793-44934812 | Msa0120280:CDS | 30.0% | |
| ! | TAACAAAAACACAAGTTGAC+GGG | - | chr1_3:44934904-44934923 | Msa0120280:CDS | 30.0% |
| GGAAGAAATTAACAATGACA+AGG | - | chr1_3:44934964-44934983 | Msa0120280:CDS | 30.0% | |
| ACATTTAATATACGCCTTCT+AGG | + | chr1_3:44935000-44935019 | None:intergenic | 30.0% | |
| !! | AGATTTACAAATTTGCTAGG+TGG | + | chr1_3:44935031-44935050 | None:intergenic | 30.0% |
| CAAAATGGTGCAATTAATAG+TGG | + | chr1_3:44935119-44935138 | None:intergenic | 30.0% | |
| TCAAGTCCCTAGTTAAAAAA+TGG | + | chr1_3:44935372-44935391 | None:intergenic | 30.0% | |
| TAGTCAATCTATGAAACTCT+CGG | - | chr1_3:44935392-44935411 | Msa0120280:intron | 30.0% | |
| GTTCATTAGTTAAGCTCATT+TGG | - | chr1_3:44935541-44935560 | Msa0120280:intron | 30.0% | |
| GCTTATATATGCAGAACAAT+TGG | - | chr1_3:44935720-44935739 | Msa0120280:intron | 30.0% | |
| AAACCCAGACATAAAATGAA+AGG | + | chr1_3:44935835-44935854 | None:intergenic | 30.0% | |
| TTAAGAAAGAGAGAACGAAG+TGG | + | chr1_3:44931637-44931656 | None:intergenic | 35.0% | |
| CATCAATTTCGCATAATGTC+AGG | - | chr1_3:44931675-44931694 | Msa0120280:three_prime_UTR | 35.0% | |
| TAATGTCAGGCAAAAAGAGA+AGG | - | chr1_3:44931688-44931707 | Msa0120280:three_prime_UTR | 35.0% | |
| !! | AATTGGGTAGTGGAAGAATA+TGG | - | chr1_3:44932336-44932355 | Msa0120280:intron | 35.0% |
| !!! | GCATTTTAAGAGCATTCAAG+TGG | - | chr1_3:44932417-44932436 | Msa0120280:intron | 35.0% |
| ! | AGCATTCAAGTGGATTTGTT+CGG | - | chr1_3:44932427-44932446 | Msa0120280:intron | 35.0% |
| ! | ATAATTTGGAGCTGCAAACA+TGG | - | chr1_3:44932535-44932554 | Msa0120280:intron | 35.0% |
| ! | TAATTTGGAGCTGCAAACAT+GGG | - | chr1_3:44932536-44932555 | Msa0120280:intron | 35.0% |
| AATACATCAACCATGGTGAT+TGG | + | chr1_3:44932683-44932702 | None:intergenic | 35.0% | |
| ! | TCATACCACTGACCAAATTT+TGG | + | chr1_3:44932708-44932727 | None:intergenic | 35.0% |
| ATTCAACTCAGGAAACTCAA+TGG | + | chr1_3:44932763-44932782 | None:intergenic | 35.0% | |
| ! | ATTGAGTTTCCTGAGTTGAA+TGG | - | chr1_3:44932762-44932781 | Msa0120280:intron | 35.0% |
| AAAAACACTCGATCAGTTCT+TGG | + | chr1_3:44932834-44932853 | None:intergenic | 35.0% | |
| TGGTATGTCATCTCAAATCT+TGG | + | chr1_3:44932891-44932910 | None:intergenic | 35.0% | |
| TTCCATATGCTACTGACAAA+AGG | + | chr1_3:44933056-44933075 | None:intergenic | 35.0% | |
| ! | CTTTTATTGCCTGAGTCTAA+CGG | - | chr1_3:44933100-44933119 | Msa0120280:intron | 35.0% |
| ! | TTTTATTGCCTGAGTCTAAC+GGG | - | chr1_3:44933101-44933120 | Msa0120280:intron | 35.0% |
| GAAAAAATTCTCTGGGCATT+TGG | + | chr1_3:44933186-44933205 | None:intergenic | 35.0% | |
| TTTCGCAAAAAATTGGTGGA+AGG | - | chr1_3:44933202-44933221 | Msa0120280:intron | 35.0% | |
| TTCGCAAAAAATTGGTGGAA+GGG | - | chr1_3:44933203-44933222 | Msa0120280:intron | 35.0% | |
| AAATTTATGACCGAGCAAGA+GGG | - | chr1_3:44933227-44933246 | Msa0120280:intron | 35.0% | |
| GAAGAGCTAAAAACACTAGA+TGG | - | chr1_3:44933326-44933345 | Msa0120280:intron | 35.0% | |
| GTTTCTTGTCTTCTCATTCA+AGG | - | chr1_3:44933366-44933385 | Msa0120280:intron | 35.0% | |
| TACTGTTCCTCATATTTCCA+AGG | + | chr1_3:44933400-44933419 | None:intergenic | 35.0% | |
| !! | AAGACCCTTTTGAAAGCATA+TGG | - | chr1_3:44933522-44933541 | Msa0120280:intron | 35.0% |
| AATCCAGAAAAATCCTTTGG+TGG | + | chr1_3:44933554-44933573 | None:intergenic | 35.0% | |
| GAGAATCCAGAAAAATCCTT+TGG | + | chr1_3:44933557-44933576 | None:intergenic | 35.0% | |
| !!! | CCTCTACACATTACTGATTT+TGG | + | chr1_3:44933611-44933630 | None:intergenic | 35.0% |
| CCAAAATCAGTAATGTGTAG+AGG | - | chr1_3:44933608-44933627 | Msa0120280:intron | 35.0% | |
| ! | AACATCTCCCATTTCAGTTT+TGG | - | chr1_3:44934086-44934105 | Msa0120280:CDS | 35.0% |
| !! | AAGAGAGATGACTGGTTTAT+TGG | - | chr1_3:44934313-44934332 | Msa0120280:CDS | 35.0% |
| !! | AGAGAGATGACTGGTTTATT+GGG | - | chr1_3:44934314-44934333 | Msa0120280:CDS | 35.0% |
| TCTGCCTAACTTTCTTAGTA+GGG | - | chr1_3:44934481-44934500 | Msa0120280:CDS | 35.0% | |
| ! | AGCCAAGAATGTCTTATTCT+TGG | - | chr1_3:44934551-44934570 | Msa0120280:CDS | 35.0% |
| TGGTTTAATCTCAACTTAGG+TGG | - | chr1_3:44934594-44934613 | Msa0120280:CDS | 35.0% | |
| TAATCTCAACTTAGGTGGTT+TGG | - | chr1_3:44934599-44934618 | Msa0120280:CDS | 35.0% | |
| AATCTCAACTTAGGTGGTTT+GGG | - | chr1_3:44934600-44934619 | Msa0120280:CDS | 35.0% | |
| GATTCTATAGTATGGAGACT+TGG | - | chr1_3:44934644-44934663 | Msa0120280:CDS | 35.0% | |
| GAAATTAACAATGACAAGGG+AGG | - | chr1_3:44934968-44934987 | Msa0120280:CDS | 35.0% | |
| ! | CTCAAAGTATAAGTTGGCTT+TGG | + | chr1_3:44935081-44935100 | None:intergenic | 35.0% |
| GTACTCAGTTAAATACTGAG+AGG | + | chr1_3:44935152-44935171 | None:intergenic | 35.0% | |
| TAATGTGCCAACTTTGTGAT+TGG | - | chr1_3:44935288-44935307 | Msa0120280:intron | 35.0% | |
| ATGGAATCCAATCACAAAGT+TGG | + | chr1_3:44935298-44935317 | None:intergenic | 35.0% | |
| AGTTCCTAGTTATCTCTCTT+TGG | - | chr1_3:44935509-44935528 | Msa0120280:intron | 35.0% | |
| TGAATCTGATGCTAAAGACT+AGG | - | chr1_3:44935631-44935650 | Msa0120280:intron | 35.0% | |
| AGCAGAGACATGATAATCAA+GGG | + | chr1_3:44935658-44935677 | None:intergenic | 35.0% | |
| ! | TCCACCTTTCATTTTATGTC+TGG | - | chr1_3:44935828-44935847 | Msa0120280:intron | 35.0% |
| ! | CCACCTTTCATTTTATGTCT+GGG | - | chr1_3:44935829-44935848 | Msa0120280:intron | 35.0% |
| GGCTGCATAAATTTGATGTT+TGG | - | chr1_3:44935902-44935921 | Msa0120280:intron | 35.0% | |
| TGTTGGATCTCTGTGTAGAA+TGG | - | chr1_3:44931832-44931851 | Msa0120280:three_prime_UTR | 40.0% | |
| CACCCATCAATTAATGAGCT+TGG | + | chr1_3:44932208-44932227 | None:intergenic | 40.0% | |
| !! | CATATCTCGTTTAGCCTTAG+AGG | - | chr1_3:44932590-44932609 | Msa0120280:intron | 40.0% |
| CTCAGGAAACTCAATGGAAT+AGG | + | chr1_3:44932757-44932776 | None:intergenic | 40.0% | |
| ACTCTAGATCCATTCAACTC+AGG | + | chr1_3:44932774-44932793 | None:intergenic | 40.0% | |
| ! | ATGGTTGGTTACTGCTATAC+CGG | - | chr1_3:44932808-44932827 | Msa0120280:intron | 40.0% |
| ! | TTGATAGTCTCCCGAGTAAA+AGG | + | chr1_3:44932864-44932883 | None:intergenic | 40.0% |
| AATACACAGTCAGGTGATGT+TGG | + | chr1_3:44932936-44932955 | None:intergenic | 40.0% | |
| ACAGTGAACAATACACAGTC+AGG | + | chr1_3:44932945-44932964 | None:intergenic | 40.0% | |
| GCATGTTAGTCCTACTATTG+TGG | - | chr1_3:44932968-44932987 | Msa0120280:intron | 40.0% | |
| ! | TGCCTTTTGTCAGTAGCATA+TGG | - | chr1_3:44933051-44933070 | Msa0120280:intron | 40.0% |
| TCGCAAAAAATTGGTGGAAG+GGG | - | chr1_3:44933204-44933223 | Msa0120280:intron | 40.0% | |
| GAAATTTATGACCGAGCAAG+AGG | - | chr1_3:44933226-44933245 | Msa0120280:intron | 40.0% | |
| TATAACATCTCCCTCTTGCT+CGG | + | chr1_3:44933240-44933259 | None:intergenic | 40.0% | |
| TGTTCCTCATATTTCCAAGG+AGG | + | chr1_3:44933397-44933416 | None:intergenic | 40.0% | |
| ! | CATATGGATTGAACCACCAA+AGG | - | chr1_3:44933538-44933557 | Msa0120280:intron | 40.0% |
| ! | GAACCACCAAAGGATTTTTC+TGG | - | chr1_3:44933548-44933567 | Msa0120280:intron | 40.0% |
| TGAATCCTAGATTACACTGC+AGG | + | chr1_3:44933803-44933822 | None:intergenic | 40.0% | |
| TTTCCAAAGCCGATGATGAT+GGG | + | chr1_3:44934234-44934253 | None:intergenic | 40.0% | |
| ! | TTTTCCAAAGCCGATGATGA+TGG | + | chr1_3:44934235-44934254 | None:intergenic | 40.0% |
| !! | TCGGCTTTGGAAAAGAGAAA+AGG | - | chr1_3:44934241-44934260 | Msa0120280:CDS | 40.0% |
| !! | CGGCTTTGGAAAAGAGAAAA+GGG | - | chr1_3:44934242-44934261 | Msa0120280:CDS | 40.0% |
| GAAAAGAGAAAAGGGATTCC+AGG | - | chr1_3:44934250-44934269 | Msa0120280:CDS | 40.0% | |
| GTCTGCCTAACTTTCTTAGT+AGG | - | chr1_3:44934480-44934499 | Msa0120280:CDS | 40.0% | |
| CCTAACTTTCTTAGTAGGGA+GGG | - | chr1_3:44934485-44934504 | Msa0120280:CDS | 40.0% | |
| CTAACTTTCTTAGTAGGGAG+GGG | - | chr1_3:44934486-44934505 | Msa0120280:CDS | 40.0% | |
| !! | GACTTGGAGAGAGTATTAGA+TGG | - | chr1_3:44934660-44934679 | Msa0120280:CDS | 40.0% |
| !! | TTGGAGAGAGTATTAGATGG+AGG | - | chr1_3:44934663-44934682 | Msa0120280:CDS | 40.0% |
| !! | TGGAGAGAGTATTAGATGGA+GGG | - | chr1_3:44934664-44934683 | Msa0120280:CDS | 40.0% |
| CATCAAAACCATTGACCTTC+AGG | + | chr1_3:44934732-44934751 | None:intergenic | 40.0% | |
| AGATTATTCCACCTAAGGCT+TGG | - | chr1_3:44934798-44934817 | Msa0120280:CDS | 40.0% | |
| !! | TGCTGCCTGCTTTTCTTTTT+TGG | - | chr1_3:44934831-44934850 | Msa0120280:CDS | 40.0% |
| !! | GCTGCCTGCTTTTCTTTTTT+GGG | - | chr1_3:44934832-44934851 | Msa0120280:CDS | 40.0% |
| CTCTCCCAAAAAAGAAAAGC+AGG | + | chr1_3:44934839-44934858 | None:intergenic | 40.0% | |
| !!! | TTCTTTTTTGGGAGAGAGAG+AGG | - | chr1_3:44934843-44934862 | Msa0120280:CDS | 40.0% |
| TTTGGTTACACGACAAAGTC+AGG | + | chr1_3:44935063-44935082 | None:intergenic | 40.0% | |
| TTCTGAGTAGTCAGAATTGC+TGG | + | chr1_3:44935205-44935224 | None:intergenic | 40.0% | |
| GACTACTCAGAAAACCTTGT+TGG | - | chr1_3:44935213-44935232 | Msa0120280:intron | 40.0% | |
| ! | AGCACTGTTTAGTTCCAACA+AGG | + | chr1_3:44935230-44935249 | None:intergenic | 40.0% |
| CAATCTATGAAACTCTCGGT+TGG | - | chr1_3:44935396-44935415 | Msa0120280:intron | 40.0% | |
| CACACCAAAGAGAGATAACT+AGG | + | chr1_3:44935516-44935535 | None:intergenic | 40.0% | |
| AGGAGGCTACTTATATGTGA+AGG | - | chr1_3:44935605-44935624 | Msa0120280:intron | 40.0% | |
| CAGCAGAGACATGATAATCA+AGG | + | chr1_3:44935659-44935678 | None:intergenic | 40.0% | |
| ! | TTTTTCCATGCATAGCGAAG+TGG | - | chr1_3:44935696-44935715 | Msa0120280:intron | 40.0% |
| CCCAGACATAAAATGAAAGG+TGG | + | chr1_3:44935832-44935851 | None:intergenic | 40.0% | |
| AAGAGAGAAATGACAGCACG+TGG | + | chr1_3:44931596-44931615 | None:intergenic | 45.0% | |
| TGGATCTCTGTGTAGAATGG+TGG | - | chr1_3:44931835-44931854 | Msa0120280:three_prime_UTR | 45.0% | |
| AATTCTATGACCCTGTGCAG+CGG | - | chr1_3:44932727-44932746 | Msa0120280:intron | 45.0% | |
| CACAAGAGAACGCAACTATC+TGG | + | chr1_3:44932911-44932930 | None:intergenic | 45.0% | |
| ! | TGACAAAAGGCAGACGGTTT+TGG | + | chr1_3:44933043-44933062 | None:intergenic | 45.0% |
| TGCTACTGACAAAAGGCAGA+CGG | + | chr1_3:44933049-44933068 | None:intergenic | 45.0% | |
| TTGATCCATCTGAACGCACT+TGG | - | chr1_3:44933138-44933157 | Msa0120280:intron | 45.0% | |
| !! | ACGCACTTGGAGCGTTTTAT+CGG | - | chr1_3:44933151-44933170 | Msa0120280:intron | 45.0% |
| AAATTCTCTGGGCATTTGGG+TGG | + | chr1_3:44933182-44933201 | None:intergenic | 45.0% | |
| TAGCTCTTCCCATTCCATTG+AGG | + | chr1_3:44933315-44933334 | None:intergenic | 45.0% | |
| CTGACCTCCTTGGAAATATG+AGG | - | chr1_3:44933390-44933409 | Msa0120280:intron | 45.0% | |
| TGCTACCTGCAGTGTAATCT+AGG | - | chr1_3:44933795-44933814 | Msa0120280:intron | 45.0% | |
| CTAACCATGCCCATCATCAT+CGG | - | chr1_3:44934222-44934241 | Msa0120280:CDS | 45.0% | |
| GCCTAACTTTCTTAGTAGGG+AGG | - | chr1_3:44934484-44934503 | Msa0120280:CDS | 45.0% | |
| CCCTCCCTACTAAGAAAGTT+AGG | + | chr1_3:44934488-44934507 | None:intergenic | 45.0% | |
| !! | AGAGAGTATTAGATGGAGGG+TGG | - | chr1_3:44934667-44934686 | Msa0120280:CDS | 45.0% |
| GTATTAGATGGAGGGTGGAA+AGG | - | chr1_3:44934672-44934691 | Msa0120280:CDS | 45.0% | |
| AGGAAAGACCTGAAGGTCAA+TGG | - | chr1_3:44934721-44934740 | Msa0120280:CDS | 45.0% | |
| GAAAACAACCAAGCCTTAGG+TGG | + | chr1_3:44934809-44934828 | None:intergenic | 45.0% | |
| AGCGAAAACAACCAAGCCTT+AGG | + | chr1_3:44934812-44934831 | None:intergenic | 45.0% | |
| AAGGGAGGATAAAGCCTAGA+AGG | - | chr1_3:44934983-44935002 | Msa0120280:CDS | 45.0% | |
| CCAGTTCAGCTGTAAAAGCA+TGG | + | chr1_3:44935317-44935336 | None:intergenic | 45.0% | |
| ! | CCATGCTTTTACAGCTGAAC+TGG | - | chr1_3:44935314-44935333 | Msa0120280:intron | 45.0% |
| !! | GGAACTCTGAAATTGCAGCA+TGG | + | chr1_3:44935495-44935514 | None:intergenic | 45.0% |
| GAGCAGAAGAGAAGCAACAG+AGG | - | chr1_3:44932503-44932522 | Msa0120280:intron | 50.0% | |
| CAGAAGAGAAGCAACAGAGG+TGG | - | chr1_3:44932506-44932525 | Msa0120280:intron | 50.0% | |
| AGCACGGACATTGTCCTCTA+AGG | + | chr1_3:44932607-44932626 | None:intergenic | 50.0% | |
| TCTTGCAAACCGCAGAAGCA+CGG | + | chr1_3:44932623-44932642 | None:intergenic | 50.0% | |
| CTTCTGCGGTTTGCAAGAGT+TGG | - | chr1_3:44932625-44932644 | Msa0120280:intron | 50.0% | |
| TGTTGCCAATGCTGTACGCA+TGG | - | chr1_3:44932653-44932672 | Msa0120280:intron | 50.0% | |
| GTTCACCATGCGTACAGCAT+TGG | + | chr1_3:44932661-44932680 | None:intergenic | 50.0% | |
| GCATGGTGAACCAATCACCA+TGG | - | chr1_3:44932670-44932689 | Msa0120280:intron | 50.0% | |
| ACACTCGATCAGTTCTTGGC+CGG | + | chr1_3:44932830-44932849 | None:intergenic | 50.0% | |
| ! | GTGCTGATGGCCACAATAGT+AGG | + | chr1_3:44932981-44933000 | None:intergenic | 50.0% |
| ! | ATTGCCTGAGTCTAACGGGT+TGG | - | chr1_3:44933105-44933124 | Msa0120280:intron | 50.0% |
| !! | TGAGTCTAACGGGTTGGCTA+GGG | - | chr1_3:44933111-44933130 | Msa0120280:intron | 50.0% |
| CAAGTTAGACCAGGCCTCAA+TGG | - | chr1_3:44933298-44933317 | Msa0120280:intron | 50.0% | |
| TAGACCAGGCCTCAATGGAA+TGG | - | chr1_3:44933303-44933322 | Msa0120280:intron | 50.0% | |
| AGACCAGGCCTCAATGGAAT+GGG | - | chr1_3:44933304-44933323 | Msa0120280:intron | 50.0% | |
| CATTCAAGGACTGACCTCCT+TGG | - | chr1_3:44933380-44933399 | Msa0120280:intron | 50.0% | |
| GCTACTATCCTCGTAAGCAG+TGG | - | chr1_3:44933483-44933502 | Msa0120280:intron | 50.0% | |
| TCGTAAGCAGTGGCATGACT+GGG | - | chr1_3:44933493-44933512 | Msa0120280:intron | 50.0% | |
| !! | AAAGCCGATGATGATGGGCA+TGG | + | chr1_3:44934229-44934248 | None:intergenic | 50.0% |
| !! | ATGCCCATCATCATCGGCTT+TGG | - | chr1_3:44934228-44934247 | Msa0120280:CDS | 50.0% |
| GTAGGGAGGGGAAGAAAAGA+AGG | - | chr1_3:44934498-44934517 | Msa0120280:CDS | 50.0% | |
| ! | TTAGGTGGTTTGGGCATCTG+TGG | - | chr1_3:44934609-44934628 | Msa0120280:CDS | 50.0% |
| !! | TTTTGGGAGAGAGAGAGGAG+AGG | - | chr1_3:44934848-44934867 | Msa0120280:CDS | 50.0% |
| ! | AAAACACAAGTTGACGGGCC+AGG | - | chr1_3:44934909-44934928 | Msa0120280:CDS | 50.0% |
| ! | AAACACAAGTTGACGGGCCA+GGG | - | chr1_3:44934910-44934929 | Msa0120280:CDS | 50.0% |
| CATTAAGAACTCGGAAGCCC+TGG | + | chr1_3:44934930-44934949 | None:intergenic | 50.0% | |
| ! | CTCATTTGGAAGCATGCCGA+AGG | - | chr1_3:44935555-44935574 | Msa0120280:intron | 50.0% |
| TGCCGAAGGCAGCATCTTTA+CGG | - | chr1_3:44935569-44935588 | Msa0120280:intron | 50.0% | |
| AAGCACCACTTCGCTATGCA+TGG | + | chr1_3:44935704-44935723 | None:intergenic | 50.0% | |
| GGACAATGTCCGTGCTTCTG+CGG | - | chr1_3:44932611-44932630 | Msa0120280:intron | 55.0% | |
| AATAGGTCCTCCGCTGCACA+GGG | + | chr1_3:44932740-44932759 | None:intergenic | 55.0% | |
| CCATCAGCACATGTCACCCT+GGG | - | chr1_3:44932991-44933010 | Msa0120280:intron | 55.0% | |
| CATCAGCACATGTCACCCTG+GGG | - | chr1_3:44932992-44933011 | Msa0120280:intron | 55.0% | |
| CTAGCCAACCCGTTAGACTC+AGG | + | chr1_3:44933112-44933131 | None:intergenic | 55.0% | |
| !! | CTGAGTCTAACGGGTTGGCT+AGG | - | chr1_3:44933110-44933129 | Msa0120280:intron | 55.0% |
| !! | GAGTCTAACGGGTTGGCTAG+GGG | - | chr1_3:44933112-44933131 | Msa0120280:intron | 55.0% |
| ACGCTCCAAGTGCGTTCAGA+TGG | + | chr1_3:44933146-44933165 | None:intergenic | 55.0% | |
| TTCTCTGGGCATTTGGGTGG+AGG | + | chr1_3:44933179-44933198 | None:intergenic | 55.0% | |
| CTTCCCATTCCATTGAGGCC+TGG | + | chr1_3:44933310-44933329 | None:intergenic | 55.0% | |
| CAGTCATGCCACTGCTTACG+AGG | + | chr1_3:44933494-44933513 | None:intergenic | 55.0% | |
| CTCGTAAGCAGTGGCATGAC+TGG | - | chr1_3:44933492-44933511 | Msa0120280:intron | 55.0% | |
| CGTAAGCAGTGGCATGACTG+GGG | - | chr1_3:44933494-44933513 | Msa0120280:intron | 55.0% | |
| GCCGAAGGCAGCATCTTTAC+GGG | - | chr1_3:44935570-44935589 | Msa0120280:intron | 55.0% | |
| GCCCGTAAAGATGCTGCCTT+CGG | + | chr1_3:44935574-44935593 | None:intergenic | 55.0% | |
| GAAGGCAGCATCTTTACGGG+CGG | - | chr1_3:44935573-44935592 | Msa0120280:intron | 55.0% | |
| AAGGCAGCATCTTTACGGGC+GGG | - | chr1_3:44935574-44935593 | Msa0120280:intron | 55.0% | |
| TTTACGGGCGGGATGTACGT+AGG | - | chr1_3:44935585-44935604 | Msa0120280:intron | 55.0% | |
| TCTATGACCCTGTGCAGCGG+AGG | - | chr1_3:44932730-44932749 | Msa0120280:intron | 60.0% | |
| GAATAGGTCCTCCGCTGCAC+AGG | + | chr1_3:44932741-44932760 | None:intergenic | 60.0% | |
| GCCATCAGCACATGTCACCC+TGG | - | chr1_3:44932990-44933009 | Msa0120280:intron | 60.0% | |
| CCCAGGGTGACATGTGCTGA+TGG | + | chr1_3:44932994-44933013 | None:intergenic | 60.0% | |
| TCACCCTGGGGCAACTGAGT+GGG | - | chr1_3:44933004-44933023 | Msa0120280:intron | 60.0% | |
| TGACCCACTCAGTTGCCCCA+GGG | + | chr1_3:44933010-44933029 | None:intergenic | 60.0% | |
| TGGGAGAGAGAGAGGAGAGG+AGG | - | chr1_3:44934851-44934870 | Msa0120280:CDS | 60.0% | |
| GGGAGAGAGAGAGGAGAGGA+GGG | - | chr1_3:44934852-44934871 | Msa0120280:CDS | 60.0% | |
| GGAGAGAGAGAGGAGAGGAG+GGG | - | chr1_3:44934853-44934872 | Msa0120280:CDS | 60.0% | |
| GAGAGAGAGAGGAGAGGAGG+GGG | - | chr1_3:44934854-44934873 | Msa0120280:CDS | 60.0% | |
| GTCACCCTGGGGCAACTGAG+TGG | - | chr1_3:44933003-44933022 | Msa0120280:intron | 65.0% | |
| GTGACCCACTCAGTTGCCCC+AGG | + | chr1_3:44933011-44933030 | None:intergenic | 65.0% | |
| ACGGGCGGGATGTACGTAGG+AGG | - | chr1_3:44935588-44935607 | Msa0120280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 44931593 | 44936054 | 44931593 | ID=Msa0120280;Name=Msa0120280 |
| chr1_3 | mRNA | 44931593 | 44936054 | 44931593 | ID=Msa0120280-mRNA-1;Parent=Msa0120280;Name=Msa0120280-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97|1|1|1|0.5|0.33|3|595|376 |
| chr1_3 | exon | 44931593 | 44932138 | 44931593 | ID=Msa0120280-mRNA-1:exon:13499;Parent=Msa0120280-mRNA-1 |
| chr1_3 | exon | 44934018 | 44935165 | 44934018 | ID=Msa0120280-mRNA-1:exon:13498;Parent=Msa0120280-mRNA-1 |
| chr1_3 | exon | 44935926 | 44936054 | 44935926 | ID=Msa0120280-mRNA-1:exon:13497;Parent=Msa0120280-mRNA-1 |
| chr1_3 | five_prime_UTR | 44935958 | 44936054 | 44935958 | ID=Msa0120280-mRNA-1:five_prime_utr;Parent=Msa0120280-mRNA-1 |
| chr1_3 | CDS | 44935926 | 44935957 | 44935926 | ID=Msa0120280-mRNA-1:cds;Parent=Msa0120280-mRNA-1 |
| chr1_3 | CDS | 44934067 | 44935165 | 44934067 | ID=Msa0120280-mRNA-1:cds;Parent=Msa0120280-mRNA-1 |
| chr1_3 | three_prime_UTR | 44934018 | 44934066 | 44934018 | ID=Msa0120280-mRNA-1:three_prime_utr;Parent=Msa0120280-mRNA-1 |
| chr1_3 | three_prime_UTR | 44931593 | 44932138 | 44931593 | ID=Msa0120280-mRNA-1:three_prime_utr;Parent=Msa0120280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
