AlfalfaGEDB | Msa0120280

M. sativa cultivar zhongmu-4 / Msa0120280

KEGG: -
GO: -
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120280	XP_013467977.1	99.468	376	2	0	1	376	1	376	0.0	779

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120280	sp\|Q9FVS1\|FBK23_ARATH	44.706	340	179	5	36	371	13	347	1.28e-97	297

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120280	I3SWK4	99.468	376	2	0	1	376	1	376	0.0	779

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0120280	0.866654	2.434872e-65	-8.615850e-47
Msa0024400	Msa0120280	0.963818	1.489753e-122	-8.615850e-47
Msa0054530	Msa0120280	0.821439	4.034870e-53	-8.615850e-47
Msa0072720	Msa0120280	0.855078	8.029156e-62	-8.615850e-47
Msa0089980	Msa0120280	0.836179	1.089197e-56	-8.615850e-47
Msa0090010	Msa0120280	0.834053	3.744036e-56	-8.615850e-47
Msa0091730	Msa0120280	0.824710	6.964637e-54	-8.615850e-47
Msa0106620	Msa0120280	0.807517	4.862783e-50	-8.615850e-47
Msa0120280	Msa0120990	0.824394	8.268239e-54	-8.615850e-47
Msa0120280	Msa0122530	0.823250	1.532245e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120280	MtrunA17_Chr1g0178491	99.468	376	2	0	1	376	1	376	0.0	779
Msa0120280	MtrunA17_Chr7g0266441	64.187	363	119	6	19	374	17	375	5.23e-165	466
Msa0120280	MtrunA17_Chr7g0266431	64.737	190	65	2	185	373	2	190	3.40e-83	251
Msa0120280	MtrunA17_Chr7g0266421	67.857	84	27	0	19	102	13	96	5.07e-35	125
Msa0120280	MtrunA17_Chr2g0286361	32.195	205	114	7	114	306	4	195	3.25e-22	94.7
Msa0120280	MtrunA17_Chr2g0283611	28.070	171	114	4	34	198	13	180	1.01e-13	71.2
Msa0120280	MtrunA17_Chr3g0143621	21.574	343	207	11	36	327	24	355	6.93e-11	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120280	AT1G57790.1	44.706	340	179	5	36	371	13	347	1.30e-98	297
Msa0120280	AT3G56470.1	43.860	342	178	4	34	372	27	357	1.14e-95	290
Msa0120280	AT4G00893.1	42.700	363	194	7	17	371	26	382	2.94e-95	290
Msa0120280	AT4G12370.1	44.702	302	155	6	83	375	1	299	1.98e-81	251
Msa0120280	AT4G10660.1	42.997	307	160	5	70	364	9	312	4.31e-78	243
Msa0120280	AT1G49360.3	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0120280	AT1G49360.2	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0120280	AT1G49360.4	36.712	365	187	15	39	373	8	358	3.24e-63	207
Msa0120280	AT1G49360.1	36.712	365	187	15	39	373	111	461	1.06e-62	208
Msa0120280	AT1G49360.5	36.712	365	187	15	39	373	88	438	1.07e-62	207

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Find 111 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAGACATAAAATGAA+AGG	0.578262	1_3:+44931793	None:intergenic
AAATTCTCTGGGCATTTGGG+TGG	0.572307	1_3:+44934446	None:intergenic
AAATTTATGACCGAGCAAGA+GGG	0.650243	1_3:-44934398	Msa0120280:CDS
AAGAATACTAATGTTTGATT+TGG	0.320130	1_3:+44931623	None:intergenic
AAGAGAGAAATGACAGCACG+TGG	0.640022	1_3:+44936032	None:intergenic
AAGCACCACTTCGCTATGCA+TGG	0.547693	1_3:+44931924	None:intergenic
AAGGCAGCATCTTTACGGGC+GGG	0.561507	1_3:-44932051	Msa0120280:three_prime_UTR
AATAAGCTTGTGTTCTGTAA+TGG	0.484684	1_3:-44934551	Msa0120280:CDS
AATACACAGTCAGGTGATGT+TGG	0.549189	1_3:+44934692	None:intergenic
AATACATCAACCATGGTGAT+TGG	0.465857	1_3:+44934945	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATTGCATTAGGGTTTA+TGG	-	chr1_3:44931945-44931964	Msa0120280:three_prime_UTR	30.0%
AAACCAAGCTCATTAATTGA+TGG	-	chr1_3:44932202-44932221	Msa0120280:intron	30.0%
AACCAAGCTCATTAATTGAT+GGG	-	chr1_3:44932203-44932222	Msa0120280:intron	30.0%
AATGCTCTTAAAATGCAACA+AGG	+	chr1_3:44932413-44932432	None:intergenic	30.0%
AGAGGTGGAAAATGATAATT+TGG	-	chr1_3:44932521-44932540	Msa0120280:intron	30.0%
TCATTTCTAATAGTTCAGCA+GGG	+	chr1_3:44932569-44932588	None:intergenic	30.0%
ATCATTTCTAATAGTTCAGC+AGG	+	chr1_3:44932570-44932589	None:intergenic	30.0%
TTTGGAAAATACATCAACCA+TGG	+	chr1_3:44932690-44932709	None:intergenic	30.0%
TTTGTTACACAAAAGATGGT+TGG	-	chr1_3:44932793-44932812	Msa0120280:intron	30.0%
AATAAGCTTGTGTTCTGTAA+TGG	-	chr1_3:44933074-44933093	Msa0120280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	44931593	44936054	44931593	ID=Msa0120280;Name=Msa0120280
chr1_3	mRNA	44931593	44936054	44931593	ID=Msa0120280-mRNA-1;Parent=Msa0120280;Name=Msa0120280-mRNA-1;_AED=0.25;_eAED=0.25;_QI=97\|1\|1\|1\|0.5\|0.33\|3\|595\|376
chr1_3	exon	44931593	44932138	44931593	ID=Msa0120280-mRNA-1:exon:13499;Parent=Msa0120280-mRNA-1
chr1_3	exon	44934018	44935165	44934018	ID=Msa0120280-mRNA-1:exon:13498;Parent=Msa0120280-mRNA-1
chr1_3	exon	44935926	44936054	44935926	ID=Msa0120280-mRNA-1:exon:13497;Parent=Msa0120280-mRNA-1
chr1_3	five_prime_UTR	44935958	44936054	44935958	ID=Msa0120280-mRNA-1:five_prime_utr;Parent=Msa0120280-mRNA-1
chr1_3	CDS	44935926	44935957	44935926	ID=Msa0120280-mRNA-1:cds;Parent=Msa0120280-mRNA-1
chr1_3	CDS	44934067	44935165	44934067	ID=Msa0120280-mRNA-1:cds;Parent=Msa0120280-mRNA-1
chr1_3	three_prime_UTR	44934018	44934066	44934018	ID=Msa0120280-mRNA-1:three_prime_utr;Parent=Msa0120280-mRNA-1
chr1_3	three_prime_UTR	44931593	44932138	44931593	ID=Msa0120280-mRNA-1:three_prime_utr;Parent=Msa0120280-mRNA-1

Gene Sequence

>Msa0120280

ATGTCAGGCAAAAAGAGAAGGAAATTGAAATTGTTAAGTGATACAATTGCTAAGAGCAGAAGAGAAGCAACAGAGGTGGAAAATGATAATTTGGAGCTGCAAACATGGGCTGATCTCCCTGCTGAACTATTAGAAATGATCATATCTCGTTTAGCCTTAGAGGACAATGTCCGTGCTTCTGCGGTTTGCAAGAGTTGGAATTTTGTTGCCAATGCTGTACGCATGGTGAACCAATCACCATGGTTGATGTATTTTCCAAAATTTGGTCAGTGGTATGAATTCTATGACCCTGTGCAGCGGAGGACCTATTCCATTGAGTTTCCTGAGTTGAATGGATCTAGAGTTTGTTACACAAAAGATGGTTGGTTACTGCTATACCGGCCAAGAACTGATCGAGTGTTTTTCTTTAATCCTTTTACTCGGGAGACTATCAAAATGCCAAGATTTGAGATGACATACCAGATAGTTGCGTTCTCTTGTGCTCCAACATCACCTGACTGTGTATTGTTCACTGTTAAGCATGTTAGTCCTACTATTGTGGCCATCAGCACATGTCACCCTGGGGCAACTGAGTGGGTCACTGTTAATTACCAAAACCGTCTGCCTTTTGTCAGTAGCATATGGAATAAGCTTGTGTTCTGTAATGGACTCTTTTATTGCCTGAGTCTAACGGGTTGGCTAGGGGTATTTGATCCATCTGAACGCACTTGGAGCGTTTTATCGGTACCTCCACCCAAATGCCCAGAGAATTTTTTCGCAAAAAATTGGTGGAAGGGGAAATTTATGACCGAGCAAGAGGGAGATGTTATAGTAATGTACACATGTTCTAGTGAAAACCCTATTATTTTCAAGTTAGACCAGGCCTCAATGGAATGGGAAGAGCTAAAAACACTAGATGGAGCAACTCTATTTGCTAGTTTCTTGTCTTCTCATTCAAGGACTGACCTCCTTGGAAATATGAGGAACAGTATCTACTTCTCTAAAGTTCGTTTTTATGGAAAGCGTTGCATATCATTCTCTCTTGATGACTATCGCTACTATCCTCGTAAGCAGTGGCATGACTGGGGTGAACAAGACCCTTTTGAAAGCATATGGATTGAACCACCAAAGGATTTTTCTGGATTCTCATGA

Protein sequence

>Msa0120280

MSGKKRRKLKLLSDTIAKSRREATEVENDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFPKFGQWYEFYDPVQRRTYSIEFPELNGSRVCYTKDGWLLLYRPRTDRVFFFNPFTRETIKMPRFEMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEWVTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPSERTWSVLSVPPPKCPENFFAKNWWKGKFMTEQEGDVIVMYTCSSENPIIFKLDQASMEWEELKTLDGATLFASFLSSHSRTDLLGNMRNSIYFSKVRFYGKRCISFSLDDYRYYPRKQWHDWGEQDPFESIWIEPPKDFSGFS*