AlfalfaGEDB | Msa1420120

M. sativa cultivar zhongmu-4 / Msa1420120

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
PFAM: PF10312.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1420120	sp\|F4I2J8\|CATIN_ARATH	69.538	650	175	5	75	720	86	716	0.0	914

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1420120	A0A445HGE2	76.124	712	117	6	9	720	48	706	0.0	1030

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024400	Msa1420120	0.854432	1.235829e-61	-8.615850e-47
Msa0072720	Msa1420120	0.898027	7.930688e-77	-8.615850e-47
Msa0089980	Msa1420120	0.808487	3.023429e-50	-8.615850e-47
Msa0090010	Msa1420120	0.807964	3.907324e-50	-8.615850e-47
Msa0104670	Msa1420120	0.808767	2.634711e-50	-8.615850e-47
Msa0116640	Msa1420120	-0.802857	4.597143e-49	-8.615850e-47
Msa0120280	Msa1420120	0.862777	3.984661e-64	-8.615850e-47
Msa0120990	Msa1420120	0.882147	1.328918e-70	-8.615850e-47
Msa0163510	Msa1420120	0.861836	7.751754e-64	-8.615850e-47
Msa0173800	Msa1420120	0.802483	5.491189e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1420120	MtrunA17_Chr1g0179691	97.821	413	9	0	308	720	246	658	0.0	860
Msa1420120	MtrunA17_Chr1g0179691	97.561	246	6	0	1	246	1	246	8.57e-157	469
Msa1420120	MtrunA17_Chr7g0265361	81.384	419	68	2	308	720	234	648	0.0	719
Msa1420120	MtrunA17_Chr7g0265361	88.649	185	21	0	62	246	50	234	1.66e-102	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1420120	AT1G03910.2	69.538	650	175	5	75	720	86	716	0.0	914
Msa1420120	AT1G03910.1	73.621	417	105	2	308	720	257	672	0.0	645
Msa1420120	AT1G03910.1	80.233	172	34	0	75	246	86	257	6.95e-86	285
Msa1420120	AT2G36815.2	52.577	97	32	2	344	439	17	100	5.82e-21	88.6
Msa1420120	AT2G36815.1	53.125	96	31	2	345	439	24	106	7.18e-21	88.6

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Find 177 sgRNAs with CRISPR-Local

Find 1128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGACAGAGAGAAAGGA+TGG	0.468118	tig0024758:+20222	Msa1420120:CDS
AAAGTGATCTCTTTGCATAT+TGG	0.373779	tig0024758:-24598	None:intergenic
AAATGCATTTGGACTTTGAC+AGG	0.412773	tig0024758:+22049	Msa1420120:CDS
AAATGTTGGCGCAGGTCTAT+TGG	0.444124	tig0024758:+25834	Msa1420120:intron
AAATTATCTTCAGATGGAGC+AGG	0.490796	tig0024758:-24914	Msa1420130:three_prime_UTR
AACCCATGTAGAATATTGGG+AGG	0.679555	tig0024758:+22080	Msa1420120:CDS
AAGAAGTAGAAGATGAGGCT+GGG	0.617278	tig0024758:+24657	Msa1420120:CDS
AAGATGCAATTGATCGAGCT+AGG	0.518701	tig0024758:+24019	Msa1420120:CDS
AATAGCTCCCATAACCTTCA+TGG	0.340612	tig0024758:-24948	Msa1420130:three_prime_UTR
AATGCAGGCGGAAATTGAAA+AGG	0.529839	tig0024758:+20512	Msa1420120:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCGAAGTGAAAATCGA+CGG	-	tig0024758:18720-18739	None:intergenic	30.0%
AGAATCTGAGAAGAATAGAA+TGG	+	tig0024758:18885-18904	Msa1420120:exon	30.0%
GAATCTGAGAAGAATAGAAT+GGG	+	tig0024758:18886-18905	Msa1420120:exon	30.0%
TGATGATAGTAGTAGTGATA+GGG	+	tig0024758:19071-19090	Msa1420120:CDS	30.0%
GAAAGTTGCTAAGAAATTGA+AGG	+	tig0024758:19430-19449	Msa1420120:CDS	30.0%
TTAAGATTGGAATCACCAAA+TGG	-	tig0024758:19491-19510	None:intergenic	30.0%
GACTTACTTCTCATTAAGAT+TGG	-	tig0024758:19504-19523	None:intergenic	30.0%
AAAAAATTAGGGAGAAGAGA+GGG	-	tig0024758:19526-19545	None:intergenic	30.0%
AAAAAAATTAGGGAGAAGAG+AGG	-	tig0024758:19527-19546	None:intergenic	30.0%
TGACCAAGAAAAAATAACCT+TGG	+	tig0024758:19835-19854	Msa1420120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024758	gene	18654	26309	18654	ID=Msa1420120;Name=Msa1420120
tig0024758	mRNA	18654	26309	18654	ID=Msa1420120-mRNA-1;Parent=Msa1420120;Name=Msa1420120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=90\|0.5\|0.53\|0.93\|0.92\|0.86\|15\|0\|720
tig0024758	exon	18654	18703	18654	ID=Msa1420120-mRNA-1:exon:1252;Parent=Msa1420120-mRNA-1
tig0024758	exon	18864	19173	18864	ID=Msa1420120-mRNA-1:exon:1253;Parent=Msa1420120-mRNA-1
tig0024758	exon	19425	19516	19425	ID=Msa1420120-mRNA-1:exon:1254;Parent=Msa1420120-mRNA-1
tig0024758	exon	20144	20243	20144	ID=Msa1420120-mRNA-1:exon:1255;Parent=Msa1420120-mRNA-1
tig0024758	exon	20519	20590	20519	ID=Msa1420120-mRNA-1:exon:1256;Parent=Msa1420120-mRNA-1
tig0024758	exon	20772	20834	20772	ID=Msa1420120-mRNA-1:exon:1257;Parent=Msa1420120-mRNA-1
tig0024758	exon	20922	21062	20922	ID=Msa1420120-mRNA-1:exon:1258;Parent=Msa1420120-mRNA-1
tig0024758	exon	21489	21674	21489	ID=Msa1420120-mRNA-1:exon:1259;Parent=Msa1420120-mRNA-1
tig0024758	exon	22006	22101	22006	ID=Msa1420120-mRNA-1:exon:1260;Parent=Msa1420120-mRNA-1
tig0024758	exon	23973	24257	23973	ID=Msa1420120-mRNA-1:exon:1261;Parent=Msa1420120-mRNA-1
tig0024758	exon	24358	24493	24358	ID=Msa1420120-mRNA-1:exon:1262;Parent=Msa1420120-mRNA-1
tig0024758	exon	24597	24754	24597	ID=Msa1420120-mRNA-1:exon:1263;Parent=Msa1420120-mRNA-1
tig0024758	exon	24848	25024	24848	ID=Msa1420120-mRNA-1:exon:1264;Parent=Msa1420120-mRNA-1
tig0024758	exon	25848	26114	25848	ID=Msa1420120-mRNA-1:exon:1265;Parent=Msa1420120-mRNA-1
tig0024758	exon	26190	26309	26190	ID=Msa1420120-mRNA-1:exon:1266;Parent=Msa1420120-mRNA-1
tig0024758	five_prime_UTR	18654	18703	18654	ID=Msa1420120-mRNA-1:five_prime_utr;Parent=Msa1420120-mRNA-1
tig0024758	five_prime_UTR	18864	18903	18864	ID=Msa1420120-mRNA-1:five_prime_utr;Parent=Msa1420120-mRNA-1
tig0024758	CDS	18904	19173	18904	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	19425	19516	19425	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	20144	20243	20144	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	20519	20590	20519	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	20772	20834	20772	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	20922	21062	20922	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	21489	21674	21489	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	22006	22101	22006	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	23973	24257	23973	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	24358	24493	24358	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	24597	24754	24597	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	24848	25024	24848	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	25848	26114	25848	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1
tig0024758	CDS	26190	26309	26190	ID=Msa1420120-mRNA-1:cds;Parent=Msa1420120-mRNA-1

Gene Sequence

>Msa1420120

ATGGGTAGGAAAGAAAGAAGGAGAAGGAAATCGGATGATTCTGCATCCGAGTCAACTTCTTCGCAATCCGATGATTCCGATAGAATCCGGAGGAGTGGTCACCATAGTGATCGGCGGTCACAGAGGAGACGGAGCCGACATGAATCGGACTCGGATAATTCTACTTCTGATGATAGTAGTAGTGATAGGGATGGTAGGAAGAGAAAGTCCTCAAGGAAAATTACTGAAGAGGAAATAGCTCAGTATTTGGCGAAAAAGGCGCAGAGAAAGGCGTTGAAAGTTGCTAAGAAATTGAAGGCTCATACTGTGTCTGGATATTCAAATGACTCGAATCCATTTGGTGATTCCAATCTTAATGAGAAGTTTGTTTGGCGTAAGAAGATTGAGCGTGATGTTGTTCAAGGTGTGCCTATTGATGAATTTTCAGTTAAAGCTGAGAAAAAGAGACAGAGAGAAAGGATGGCGGAAATTGAAAAGGTGAAAAAACGAAGAGAAGAGAGGGCACTTGAGAAAGCACGACATGAGGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGAGCTGAGTTCCAGGACTGGGAAAAAAGAGAAGTGGAGTTTCATTTTGATCAAAGCAAGTTTAGGTCTGAAATTAGATTGCGTGAAGGACGTGCCAAGCCAATTGATATCCTTACCAAACATCTTGATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGCATCGATACAAACATTTCCTTCATCGCACCAAAATCCACAACTGCCATGACCACAATTTCTGTCACTCAGCGATGCTATCATTCATACTAAACGCTCTCTGCAGTAACGCCGTTGTCGTCACAGTGCTGCTGTACTACCACCTCACCCGTTTTCTTCACTGCTTTCCAACTGCAGTGATGGACCGAGGTTTGACAGTGAATGAAATGGAAGAGCTCCGTGATGATATCAAAATGCATTTGGACTTTGACAGGGCCACGCCAACCCATGTAGAATATTGGGAGGCACTCCTTCTGGTGAGTGATTGGGAGTTAGCTGAAGCTAGAAAAAAAGATGCAATTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCAGCCGAGGTGCTTGCTGAACAGAGAGGTCTGCATAACAGTGTTGAACCAGATGTGAAGAAGCTTTTGCAGGGGAAGACACATGCAGAATTGGAAGCTTTGCAGGCGCATATTGAGTCAGAAATGCGTACTGGTGCAGCAAAGCTTGTTGAGTACTGGGAGACTGTTTTAAAGTACCTCCGCATATATAAAGCCAAGGCTTGTTTAAAGGAAATTCATGCCAAAATGTTACGCAAGCATTTGCTACGCCTTAAGAAACCATCAGAGGGTGAAGATAAATTGGAAGATGCTCATGTTATGAAATCTGAGGAGGATATTGAGGATTATGTTAAATTCCAATATGCAAAGAGATCACTTTCTCCCGAACCCATTAAAGCAGAGGGTCAAGAAGGTGAAGAAGTAGAAGATGAGGCTGGGTCCTTTTCACCAGAACTGTTTCATGGTGATGAAAATGAGGAAGCTATTGATCCTGAAGAGGACAGAGCTCTACTGGAACAAAAACGTTTGTCTGTAAAAGAAGAGCAGCAGAGACGAATTCAGGAAGCAATGGCATCAAAGCCTGCTCCATCTGAAGATAATTTTGAGATGAAAGCCATGAAGGTTATGGGAGCTATTGAAGAAGGAGATGTAATTTTTGGCTCTGGTGCAGAAGTAAATCTGGATTCACAGGTCTATTGGTGGCATGACAAATACAGGCCCAGGAAACCAAAGTATTTCAACCGTGTTCATACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAATCCACCTCCAAAGGTTGTACAAGGGTATAAATTTAACATATTCTACCCAGACCTTGTAGACAAGACACAAGCTCCAACTTACACTATTGAGAAGGATGGCAGCAATGGCGAGACTTGCATCATAAGATTCCATGCAGGGCCACCATACGAAGACATTGCTTTCCGCATTGTAAACAAAGAATGGGAATATTCTCACAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTACATGTATACTTCAATTTCAAACGCCACCGCTACCGCAGATAA

Protein sequence

>Msa1420120

MGRKERRRRKSDDSASESTSSQSDDSDRIRRSGHHSDRRSQRRRSRHESDSDNSTSDDSSSDRDGRKRKSSRKITEEEIAQYLAKKAQRKALKVAKKLKAHTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVVQGVPIDEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKREVEFHFDQSKFRSEIRLREGRAKPIDILTKHLDGSDDLDIEINEPYMVFKHRYKHFLHRTKIHNCHDHNFCHSAMLSFILNALCSNAVVVTVLLYYHLTRFLHCFPTAVMDRGLTVNEMEELRDDIKMHLDFDRATPTHVEYWEALLLVSDWELAEARKKDAIDRARVRGEEPPAEVLAEQRGLHNSVEPDVKKLLQGKTHAELEALQAHIESEMRTGAAKLVEYWETVLKYLRIYKAKACLKEIHAKMLRKHLLRLKKPSEGEDKLEDAHVMKSEEDIEDYVKFQYAKRSLSPEPIKAEGQEGEEVEDEAGSFSPELFHGDENEEAIDPEEDRALLEQKRLSVKEEQQRRIQEAMASKPAPSEDNFEMKAMKVMGAIEEGDVIFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLVDKTQAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR*