AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0416210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416210 MtrunA17_Chr3g0112791 91.244 217 15 1 1 213 1 217 2.90e-143 398
Msa0416210 MtrunA17_Chr5g0436201 56.944 216 64 7 22 213 1 211 1.10e-72 219
Msa0416210 MtrunA17_Chr7g0240961 56.024 166 55 7 53 209 74 230 2.93e-50 163
Msa0416210 MtrunA17_Chr3g0112811 68.702 131 31 5 10 138 1 123 1.70e-47 152
Msa0416210 MtrunA17_Chr8g0379191 34.934 229 118 9 3 211 92 309 5.94e-30 112
Msa0416210 MtrunA17_Chr4g0045171 33.333 225 127 7 3 211 81 298 2.38e-29 110
Msa0416210 MtrunA17_Chr2g0284111 40.000 135 61 3 84 207 153 278 4.32e-28 107
Msa0416210 MtrunA17_Chr3g0120281 42.188 64 28 1 87 150 240 294 4.67e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416210 AT5G05830.1 53.261 184 70 5 40 213 26 203 2.35e-51 165
Msa0416210 AT5G01070.1 50.735 136 55 4 84 213 75 204 2.85e-37 129
Msa0416210 AT2G37950.1 45.865 133 61 2 84 213 81 205 1.37e-35 125
Msa0416210 AT5G59000.1 40.132 152 59 3 86 209 80 227 5.00e-27 103
Msa0416210 AT2G34200.2 37.209 129 71 4 84 210 99 219 2.94e-19 82.8
Msa0416210 AT2G34200.1 37.209 129 71 4 84 210 99 219 2.94e-19 82.8
Msa0416210 AT5G60580.4 43.750 64 27 1 87 150 257 311 5.79e-11 61.6
Msa0416210 AT5G60580.2 43.750 64 27 1 87 150 257 311 5.79e-11 61.6
Msa0416210 AT5G60580.1 43.750 64 27 1 87 150 257 311 6.21e-11 61.6
Msa0416210 AT5G60580.3 43.750 64 27 1 87 150 257 311 6.21e-11 61.6

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATTGTCTTCTCATT+TGG 0.163355 3_2:-62986823 Msa0416210:three_prime_UTR
TCCTGAAGTTATAGGATTTC+AGG 0.175642 3_2:+62987128 None:intergenic
CTTCTTTCAACAAACCTTAA+TGG 0.186312 3_2:-62989746 Msa0416210:five_prime_UTR
CTGCTAGATCCTGAAGTTAT+AGG 0.214776 3_2:+62987120 None:intergenic
CCAGCTTCCAAACATAATTT+AGG 0.216231 3_2:-62986931 Msa0416210:three_prime_UTR
TTCTTATTGTCTTCTCATTT+GGG 0.244244 3_2:-62986822 Msa0416210:three_prime_UTR
ATGTGCTGAAGCTTGGTTTA+AGG 0.266567 3_2:-62989340 Msa0416210:CDS
TTAACTCTTAGGTATTAATT+TGG 0.281557 3_2:+62989854 None:intergenic
GAGATCATGAATACCCATTA+AGG 0.284798 3_2:+62989732 None:intergenic
TTCTTTCAACAAACCTTAAT+GGG 0.300039 3_2:-62989745 Msa0416210:five_prime_UTR
GTCTGAATGTTGTGTGGATT+TGG 0.311840 3_2:-62989526 Msa0416210:CDS
AATCTTCATGTCATGGCTTT+GGG 0.337486 3_2:+62989704 None:intergenic
GAATCTTCATGTCATGGCTT+TGG 0.342745 3_2:+62989703 None:intergenic
AGATCTACACGTTAACTCTT+AGG 0.347614 3_2:+62989843 None:intergenic
GAATTTCCTCCTTGCCTGTA+TGG 0.353899 3_2:-62987196 Msa0416210:CDS
CTTCTCATTTGGGTTATGAA+TGG 0.367231 3_2:-62986812 Msa0416210:three_prime_UTR
GATACTTCCTAAATTATGTT+TGG 0.383113 3_2:+62986924 None:intergenic
GATGATGACCAACATGAATC+TGG 0.390187 3_2:-62989420 Msa0416210:CDS
TCATTGCCTTTGTCATCTCC+TGG 0.395813 3_2:-62987173 Msa0416210:CDS
TCCATTGCTAGAAATGTATC+TGG 0.396063 3_2:-62987333 Msa0416210:CDS
TCCTGAAATCCTATAACTTC+AGG 0.402202 3_2:-62987129 Msa0416210:exon
ACACGAACATCCTAGTTCAA+TGG 0.404206 3_2:+62989392 None:intergenic
TAGGATTTGTCATCTCAGTA+TGG 0.410659 3_2:-62989457 Msa0416210:CDS
TTGTTGAAAGAAGAAGAAAA+AGG 0.424162 3_2:+62989756 None:intergenic
CCTAAATTATGTTTGGAAGC+TGG 0.430685 3_2:+62986931 None:intergenic
CACGAACATCCTAGTTCAAT+GGG 0.431600 3_2:+62989393 None:intergenic
CATGGTACCTGTGTTTATAA+TGG 0.435036 3_2:+62987062 None:intergenic
GTAAGATGATTGAGGATTTG+TGG 0.435692 3_2:-62987097 Msa0416210:three_prime_UTR
AAGTTATAACTTATAATAAC+AGG 0.436688 3_2:+62986865 None:intergenic
GGCGTTGAGTTTCTGCAGGT+GGG 0.455693 3_2:+62987235 None:intergenic
CGTTGAGTTTCTGCAGGTGG+GGG 0.472177 3_2:+62987237 None:intergenic
ATAAACAATGTGCTGAAGCT+TGG 0.473834 3_2:-62989347 Msa0416210:CDS
ATGTTCGTGTAAAGATGATT+TGG 0.486734 3_2:-62989379 Msa0416210:CDS
ATGTTGTGTGGATTTGGATC+TGG 0.492466 3_2:-62989520 Msa0416210:CDS
CAAGGAGGAAATTCAAGAAC+CGG 0.500384 3_2:+62987205 None:intergenic
ATGGTGTGAAGAGAGATTGT+AGG 0.503740 3_2:-62989476 Msa0416210:CDS
TGAAGCTTGGTTTAAGGTCA+AGG 0.518133 3_2:-62989334 Msa0416210:CDS
AACTCTACAGCGGAGAATGT+TGG 0.523212 3_2:-62989585 Msa0416210:CDS
ACCAGATACATTTCTAGCAA+TGG 0.523936 3_2:+62987332 None:intergenic
AGGCGTTGAGTTTCTGCAGG+TGG 0.528353 3_2:+62987234 None:intergenic
AATTCAAGAACCGGTGGAGT+AGG 0.535576 3_2:+62987214 None:intergenic
AGTAGGCGTTGAGTTTCTGC+AGG 0.542394 3_2:+62987231 None:intergenic
TGTTCAAGTAAGTAACAAGA+AGG 0.544984 3_2:-62986997 Msa0416210:three_prime_UTR
AGTTGAGAATCTTCATGTCA+TGG 0.547212 3_2:+62989697 None:intergenic
CTATAACTTCAGGATCTAGC+AGG 0.548028 3_2:-62987119 Msa0416210:three_prime_UTR
TCTGGGACTCCCATTGAACT+AGG 0.554284 3_2:-62989402 Msa0416210:CDS
GACAAAGGCAATGACCATAC+AGG 0.555573 3_2:+62987182 None:intergenic
GTCTGTGTCTGAATGTTGTG+TGG 0.557366 3_2:-62989532 Msa0416210:CDS
AAACTCAACGCCTACTCCAC+CGG 0.563737 3_2:-62987224 Msa0416210:CDS
GCGTTGAGTTTCTGCAGGTG+GGG 0.569049 3_2:+62987236 None:intergenic
TCTAGCAGGTAAGATGATTG+AGG 0.586586 3_2:-62987105 Msa0416210:three_prime_UTR
ATTGAGACTGCATTGTGTTG+AGG 0.593238 3_2:-62986765 Msa0416210:three_prime_UTR
ATGATGACCAACATGAATCT+GGG 0.596167 3_2:-62989419 Msa0416210:CDS
ACTGTGGTTAATGTTGATGA+TGG 0.601911 3_2:-62989495 Msa0416210:CDS
TACAGAACTTGTGAAATCTG+TGG 0.602282 3_2:-62987357 Msa0416210:intron
AATAAGAAGCAGTTGAGACA+AGG 0.603597 3_2:+62986837 None:intergenic
GAAGCTTGGTTTAAGGTCAA+GGG 0.608837 3_2:-62989333 Msa0416210:CDS
GTTCAAGTAAGTAACAAGAA+GGG 0.613575 3_2:-62986996 Msa0416210:three_prime_UTR
ACTTGTCTTGTCCTGCGTGA+AGG 0.618259 3_2:+62989655 None:intergenic
ACATTGAAAATGCATCTCCT+CGG 0.624698 3_2:-62989608 Msa0416210:CDS
TGGGAGTCCCAGATTCATGT+TGG 0.638328 3_2:+62989412 None:intergenic
GGATTTGGATCTGGAGACTG+TGG 0.648946 3_2:-62989511 Msa0416210:CDS
GGAGGAAATTCAAGAACCGG+TGG 0.655498 3_2:+62987208 None:intergenic
TCTGTGACCATTATAAACAC+AGG 0.659282 3_2:-62987069 Msa0416210:three_prime_UTR
AGGCAATGACCATACAGGCA+AGG 0.660733 3_2:+62987187 None:intergenic
ATCGAAAATGTCCTTCACGC+AGG 0.666258 3_2:-62989666 Msa0416210:CDS
TTCTCCGCTGTAGAGTTCCG+AGG 0.672525 3_2:+62989591 None:intergenic
CAATGACCATACAGGCAAGG+AGG 0.693990 3_2:+62987190 None:intergenic
AAGTTGAAATGACAGAACAG+TGG 0.697944 3_2:-62987302 Msa0416210:CDS
ATCTCCTCGGAACTCTACAG+CGG 0.720267 3_2:-62989595 Msa0416210:CDS
AGAGACGCGTGAATTGAACA+TGG 0.743408 3_2:+62987044 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAAAAAAAATGACT+AGG - chr3_2:62987770-62987789 Msa0416210:intron 10.0%
!!! ATTAACATTGTTTCTTAATT+AGG - chr3_2:62987322-62987341 Msa0416210:CDS 15.0%
!! TCAAAAATCAAGTAAATTAT+TGG - chr3_2:62987883-62987902 Msa0416210:intron 15.0%
!! CAAAAATCAAGTAAATTATT+GGG - chr3_2:62987884-62987903 Msa0416210:intron 15.0%
!!! TTTTAGAAAAACATGTTATA+TGG + chr3_2:62988435-62988454 None:intergenic 15.0%
!!! TTAATTCTTTTATTCCATTT+TGG - chr3_2:62988738-62988757 Msa0416210:intron 15.0%
!!! TAATTCTTTTATTCCATTTT+GGG - chr3_2:62988739-62988758 Msa0416210:intron 15.0%
!!! AGTTAACTGTTTTATTTTTT+TGG - chr3_2:62989199-62989218 Msa0416210:intron 15.0%
!! AAGTTATAACTTATAATAAC+AGG + chr3_2:62989745-62989764 None:intergenic 15.0%
!! TTAACTCTTAGGTATTAATT+TGG + chr3_2:62986756-62986775 None:intergenic 20.0%
!!! TGATTTTTGAATAATAGAAC+AGG + chr3_2:62987873-62987892 None:intergenic 20.0%
!!! GTTAAACTACTATAATCTTT+TGG - chr3_2:62988793-62988812 Msa0416210:intron 20.0%
!!! CATTATCTTATTTAATAGAC+TGG - chr3_2:62988817-62988836 Msa0416210:intron 20.0%
!!! TATTTATAGAAGTATAAGGA+TGG + chr3_2:62989132-62989151 None:intergenic 20.0%
!!! GAAGTATTTATAGAAGTATA+AGG + chr3_2:62989136-62989155 None:intergenic 20.0%
!! CTTCTATAAATACTTCTAAT+TGG - chr3_2:62989140-62989159 Msa0416210:intron 20.0%
!!! TGCAAAAATATTTTTGTTGT+TGG - chr3_2:62989641-62989660 Msa0416210:CDS 20.0%
! TTGTTGAAAGAAGAAGAAAA+AGG + chr3_2:62986854-62986873 None:intergenic 25.0%
! TTCTTTCAACAAACCTTAAT+GGG - chr3_2:62986862-62986881 Msa0416210:three_prime_UTR 25.0%
! TTTCTTAATTAGGTGTGTAA+TGG - chr3_2:62987332-62987351 Msa0416210:CDS 25.0%
! TTCTTAATTAGGTGTGTAAT+GGG - chr3_2:62987333-62987352 Msa0416210:CDS 25.0%
!!! CAAAGCATATCATTTTTATC+TGG + chr3_2:62987685-62987704 None:intergenic 25.0%
!! TTGTGTAGTAAATAGTTTGT+AGG - chr3_2:62987702-62987721 Msa0416210:intron 25.0%
! TATCATAATTGTGCTTGAAT+TGG + chr3_2:62987729-62987748 None:intergenic 25.0%
!! TTTTTGAATAATAGAACAGG+AGG + chr3_2:62987870-62987889 None:intergenic 25.0%
!! GTTTTCAGCTTATCTTTATA+AGG - chr3_2:62988049-62988068 Msa0416210:intron 25.0%
! TTATCTTTATAAGGTCTCAA+GGG - chr3_2:62988058-62988077 Msa0416210:intron 25.0%
! AAATGAAGTTGTTTATCCAA+AGG - chr3_2:62988168-62988187 Msa0416210:intron 25.0%
!! ATCTAAAATGTTTCTACCTT+TGG + chr3_2:62988187-62988206 None:intergenic 25.0%
!!! TTTGCTTTTATGTGATGTTA+CGG - chr3_2:62988329-62988348 Msa0416210:intron 25.0%
!!! CCGTATTTTGAAAACAAAAA+GGG + chr3_2:62988411-62988430 None:intergenic 25.0%
!!! CCCTTTTTGTTTTCAAAATA+CGG - chr3_2:62988408-62988427 Msa0416210:intron 25.0%
!!! TCCGTATTTTGAAAACAAAA+AGG + chr3_2:62988412-62988431 None:intergenic 25.0%
! CTGCGATATAAAAACATTTA+GGG + chr3_2:62988594-62988613 None:intergenic 25.0%
! GAAAGTCTGAAAATTGATAA+TGG - chr3_2:62988701-62988720 Msa0416210:intron 25.0%
! CCAAATTTACATGAATCAAA+AGG + chr3_2:62988882-62988901 None:intergenic 25.0%
!!! CCTTTTGATTCATGTAAATT+TGG - chr3_2:62988879-62988898 Msa0416210:intron 25.0%
! TGTAAATTTGGAAAACATCT+TGG - chr3_2:62988891-62988910 Msa0416210:intron 25.0%
! TCCAGCCAATATAAAAAATT+CGG + chr3_2:62988929-62988948 None:intergenic 25.0%
! GATACTTCCTAAATTATGTT+TGG + chr3_2:62989686-62989705 None:intergenic 25.0%
! TTCTTATTGTCTTCTCATTT+GGG - chr3_2:62989785-62989804 Msa0416210:five_prime_UTR 25.0%
CTTCTTTCAACAAACCTTAA+TGG - chr3_2:62986861-62986880 Msa0416210:three_prime_UTR 30.0%
ATGTTCGTGTAAAGATGATT+TGG - chr3_2:62987228-62987247 Msa0416210:CDS 30.0%
ACTAGATTAAGACATGCTAT+TGG - chr3_2:62987646-62987665 Msa0416210:intron 30.0%
AATGGGTATAGACGAATATA+AGG - chr3_2:62987927-62987946 Msa0416210:intron 30.0%
CTTATCTTTATAAGGTCTCA+AGG - chr3_2:62988057-62988076 Msa0416210:intron 30.0%
AACAATATGAGAGCTTACAA+AGG + chr3_2:62988285-62988304 None:intergenic 30.0%
CATATTGTTTCCCTATTAGA+AGG - chr3_2:62988296-62988315 Msa0416210:intron 30.0%
GATTCTACTTCCTTCTAATA+GGG + chr3_2:62988309-62988328 None:intergenic 30.0%
AGATTCTACTTCCTTCTAAT+AGG + chr3_2:62988310-62988329 None:intergenic 30.0%
! GAAACAGTTTAGTCTTCTAA+GGG - chr3_2:62988351-62988370 Msa0416210:intron 30.0%
! AAAAACATTTAGGGTGTGTT+TGG + chr3_2:62988585-62988604 None:intergenic 30.0%
CCTGCGATATAAAAACATTT+AGG + chr3_2:62988595-62988614 None:intergenic 30.0%
!! CCTAAATGTTTTTATATCGC+AGG - chr3_2:62988592-62988611 Msa0416210:intron 30.0%
AGTTGAATCAAATCACAACT+AGG + chr3_2:62988677-62988696 None:intergenic 30.0%
!!! CTTTTATTCCATTTTGGGTT+TGG - chr3_2:62988744-62988763 Msa0416210:intron 30.0%
!!! TGTGGCCGAATTTTTTATAT+TGG - chr3_2:62988921-62988940 Msa0416210:intron 30.0%
! GCAATATTTTACCATCAAAC+AGG + chr3_2:62988970-62988989 None:intergenic 30.0%
ATGCTTGAATTCACATACTA+TGG + chr3_2:62989021-62989040 None:intergenic 30.0%
!!! ATTTGTCACTTTTCTACCTT+TGG + chr3_2:62989091-62989110 None:intergenic 30.0%
! AAAAGTGACAAATGTTGGTT+AGG - chr3_2:62989098-62989117 Msa0416210:intron 30.0%
TGTTCAAGTAAGTAACAAGA+AGG - chr3_2:62989610-62989629 Msa0416210:CDS 30.0%
GTTCAAGTAAGTAACAAGAA+GGG - chr3_2:62989611-62989630 Msa0416210:CDS 30.0%
! TCATATTTTTCACAACATGC+AGG - chr3_2:62989706-62989725 Msa0416210:CDS 30.0%
CTTCTTATTGTCTTCTCATT+TGG - chr3_2:62989784-62989803 Msa0416210:five_prime_UTR 30.0%
AGATCTACACGTTAACTCTT+AGG + chr3_2:62986767-62986786 None:intergenic 35.0%
GAGATCATGAATACCCATTA+AGG + chr3_2:62986878-62986897 None:intergenic 35.0%
AATCTTCATGTCATGGCTTT+GGG + chr3_2:62986906-62986925 None:intergenic 35.0%
AGTTGAGAATCTTCATGTCA+TGG + chr3_2:62986913-62986932 None:intergenic 35.0%
! TGCATTTTCAATGTTGTCGA+CGG + chr3_2:62986993-62987012 None:intergenic 35.0%
ACATTGAAAATGCATCTCCT+CGG - chr3_2:62986999-62987018 Msa0416210:three_prime_UTR 35.0%
! ACTGTGGTTAATGTTGATGA+TGG - chr3_2:62987112-62987131 Msa0416210:three_prime_UTR 35.0%
TAGGATTTGTCATCTCAGTA+TGG - chr3_2:62987150-62987169 Msa0416210:CDS 35.0%
ATGATGACCAACATGAATCT+GGG - chr3_2:62987188-62987207 Msa0416210:CDS 35.0%
ATAAACAATGTGCTGAAGCT+TGG - chr3_2:62987260-62987279 Msa0416210:CDS 35.0%
!! TGTAGCATTGACACTTATGA+TGG - chr3_2:62987416-62987435 Msa0416210:intron 35.0%
ACTCACTATTAGTGCTTCAT+AGG - chr3_2:62987531-62987550 Msa0416210:intron 35.0%
ACAAGAGTGACTCAAATAGT+AGG + chr3_2:62987566-62987585 None:intergenic 35.0%
TGACATGTGCTGAATATTCT+CGG - chr3_2:62987585-62987604 Msa0416210:intron 35.0%
AATATTCTCGGAGGTTTAGA+TGG - chr3_2:62987597-62987616 Msa0416210:intron 35.0%
! TACCCATTTTACCCTTTTCT+GGG + chr3_2:62987915-62987934 None:intergenic 35.0%
! ATACCCATTTTACCCTTTTC+TGG + chr3_2:62987916-62987935 None:intergenic 35.0%
ATGATTGTCTGAGAGAACTT+AGG - chr3_2:62987998-62988017 Msa0416210:intron 35.0%
ACAACTTCATTTGCAGCTTA+TGG + chr3_2:62988160-62988179 None:intergenic 35.0%
! ACATTTTAGATAACCAGAGC+TGG - chr3_2:62988196-62988215 Msa0416210:intron 35.0%
! CATTTTAGATAACCAGAGCT+GGG - chr3_2:62988197-62988216 Msa0416210:intron 35.0%
! ATTTTAGATAACCAGAGCTG+GGG - chr3_2:62988198-62988217 Msa0416210:intron 35.0%
TATCAAACATGATGTGCACT+GGG + chr3_2:62988246-62988265 None:intergenic 35.0%
ATATCAAACATGATGTGCAC+TGG + chr3_2:62988247-62988266 None:intergenic 35.0%
! GGAAACAGTTTAGTCTTCTA+AGG - chr3_2:62988350-62988369 Msa0416210:intron 35.0%
! TGTGTTTGGATTGATGGTAT+AGG - chr3_2:62988374-62988393 Msa0416210:intron 35.0%
! TTTGGATTGATGGTATAGGA+GGG - chr3_2:62988378-62988397 Msa0416210:intron 35.0%
TTTATATCGCAGGTACTTAG+AGG - chr3_2:62988602-62988621 Msa0416210:intron 35.0%
! TCCAACTTTTATGTGACAGT+TGG + chr3_2:62988843-62988862 None:intergenic 35.0%
AAACATCTTGGAAACTCTTG+TGG - chr3_2:62988903-62988922 Msa0416210:intron 35.0%
!!! GCCGAATTTTTTATATTGGC+TGG - chr3_2:62988925-62988944 Msa0416210:intron 35.0%
ATTGGCTGGATTAATTCTCA+TGG - chr3_2:62988939-62988958 Msa0416210:intron 35.0%
AAGTAGTTGTTCAAGTCCAA+AGG - chr3_2:62989072-62989091 Msa0416210:intron 35.0%
GGTAGAAAAGTGACAAATGT+TGG - chr3_2:62989093-62989112 Msa0416210:intron 35.0%
! ATAGAAGTATAAGGATGGCT+TGG + chr3_2:62989127-62989146 None:intergenic 35.0%
TACAGAACTTGTGAAATCTG+TGG - chr3_2:62989250-62989269 Msa0416210:intron 35.0%
TCCATTGCTAGAAATGTATC+TGG - chr3_2:62989274-62989293 Msa0416210:intron 35.0%
!! ACCAGATACATTTCTAGCAA+TGG + chr3_2:62989278-62989297 None:intergenic 35.0%
AAGTTGAAATGACAGAACAG+TGG - chr3_2:62989305-62989324 Msa0416210:intron 35.0%
TCCTGAAATCCTATAACTTC+AGG - chr3_2:62989478-62989497 Msa0416210:CDS 35.0%
TCCTGAAGTTATAGGATTTC+AGG + chr3_2:62989482-62989501 None:intergenic 35.0%
GTAAGATGATTGAGGATTTG+TGG - chr3_2:62989510-62989529 Msa0416210:CDS 35.0%
TCTGTGACCATTATAAACAC+AGG - chr3_2:62989538-62989557 Msa0416210:CDS 35.0%
CATGGTACCTGTGTTTATAA+TGG + chr3_2:62989548-62989567 None:intergenic 35.0%
CCTAAATTATGTTTGGAAGC+TGG + chr3_2:62989679-62989698 None:intergenic 35.0%
CCAGCTTCCAAACATAATTT+AGG - chr3_2:62989676-62989695 Msa0416210:CDS 35.0%
AATAAGAAGCAGTTGAGACA+AGG + chr3_2:62989773-62989792 None:intergenic 35.0%
! CTTCTCATTTGGGTTATGAA+TGG - chr3_2:62989795-62989814 Msa0416210:five_prime_UTR 35.0%
GAATCTTCATGTCATGGCTT+TGG + chr3_2:62986907-62986926 None:intergenic 40.0%
! GCATTTTCAATGTTGTCGAC+GGG + chr3_2:62986992-62987011 None:intergenic 40.0%
GTCTGAATGTTGTGTGGATT+TGG - chr3_2:62987081-62987100 Msa0416210:three_prime_UTR 40.0%
ATGTTGTGTGGATTTGGATC+TGG - chr3_2:62987087-62987106 Msa0416210:three_prime_UTR 40.0%
ATGGTGTGAAGAGAGATTGT+AGG - chr3_2:62987131-62987150 Msa0416210:exon 40.0%
GATGATGACCAACATGAATC+TGG - chr3_2:62987187-62987206 Msa0416210:CDS 40.0%
CACGAACATCCTAGTTCAAT+GGG + chr3_2:62987217-62987236 None:intergenic 40.0%
ACACGAACATCCTAGTTCAA+TGG + chr3_2:62987218-62987237 None:intergenic 40.0%
ATGTGCTGAAGCTTGGTTTA+AGG - chr3_2:62987267-62987286 Msa0416210:CDS 40.0%
! TGAAGCTTGGTTTAAGGTCA+AGG - chr3_2:62987273-62987292 Msa0416210:CDS 40.0%
! GAAGCTTGGTTTAAGGTCAA+GGG - chr3_2:62987274-62987293 Msa0416210:CDS 40.0%
AAGTGAAACTTGCAAGATGC+AGG + chr3_2:62987840-62987859 None:intergenic 40.0%
TGTCCCAGAAAAGGGTAAAA+TGG - chr3_2:62987909-62987928 Msa0416210:intron 40.0%
GTCCCAGAAAAGGGTAAAAT+GGG - chr3_2:62987910-62987929 Msa0416210:intron 40.0%
! TAGTCTTCTAAGGGTGTGTT+TGG - chr3_2:62988360-62988379 Msa0416210:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+TGG - chr3_2:62988368-62988387 Msa0416210:intron 40.0%
! GTTTGGATTGATGGTATAGG+AGG - chr3_2:62988377-62988396 Msa0416210:intron 40.0%
! TTGGATTGATGGTATAGGAG+GGG - chr3_2:62988379-62988398 Msa0416210:intron 40.0%
! ACATTTAGGGTGTGTTTGGA+TGG + chr3_2:62988581-62988600 None:intergenic 40.0%
ATGGACTTCATGTGGAGAAT+GGG - chr3_2:62988625-62988644 Msa0416210:intron 40.0%
GCCAACTGTCACATAAAAGT+TGG - chr3_2:62988839-62988858 Msa0416210:intron 40.0%
! TCATGGCTTTACCTGTTTGA+TGG - chr3_2:62988956-62988975 Msa0416210:intron 40.0%
GTGAATTCAAGCATGTACTG+CGG - chr3_2:62989027-62989046 Msa0416210:intron 40.0%
CAAGGAGGAAATTCAAGAAC+CGG + chr3_2:62989405-62989424 None:intergenic 40.0%
AAAAAGCCAGGAGATGACAA+AGG + chr3_2:62989443-62989462 None:intergenic 40.0%
CAAATAGAAGCGAAAAAGCC+AGG + chr3_2:62989455-62989474 None:intergenic 40.0%
CTGCTAGATCCTGAAGTTAT+AGG + chr3_2:62989490-62989509 None:intergenic 40.0%
CTATAACTTCAGGATCTAGC+AGG - chr3_2:62989488-62989507 Msa0416210:CDS 40.0%
TCTAGCAGGTAAGATGATTG+AGG - chr3_2:62989502-62989521 Msa0416210:CDS 40.0%
ATTGAGACTGCATTGTGTTG+AGG - chr3_2:62989842-62989861 Msa0416210:five_prime_UTR 40.0%
! TGCGTGAAGGACATTTTCGA+TGG + chr3_2:62986942-62986961 None:intergenic 45.0%
ATCGAAAATGTCCTTCACGC+AGG - chr3_2:62986941-62986960 Msa0416210:three_prime_UTR 45.0%
AACTCTACAGCGGAGAATGT+TGG - chr3_2:62987022-62987041 Msa0416210:three_prime_UTR 45.0%
GTCTGTGTCTGAATGTTGTG+TGG - chr3_2:62987075-62987094 Msa0416210:three_prime_UTR 45.0%
CACATGTGTCAGTGTTGTGT+CGG + chr3_2:62987451-62987470 None:intergenic 45.0%
CATGTGCTGAATATTCTCGG+AGG - chr3_2:62987588-62987607 Msa0416210:intron 45.0%
AGGTGCATCAGCATTTGCAT+AGG - chr3_2:62987790-62987809 Msa0416210:intron 45.0%
TATTGGGTGTGTCCCAGAAA+AGG - chr3_2:62987900-62987919 Msa0416210:intron 45.0%
ATTGGGTGTGTCCCAGAAAA+GGG - chr3_2:62987901-62987920 Msa0416210:intron 45.0%
TGGGGACGAAAATTCAGTAG+AGG - chr3_2:62988216-62988235 Msa0416210:intron 45.0%
! ATTGATGGTATAGGAGGGGA+AGG - chr3_2:62988383-62988402 Msa0416210:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr3_2:62988567-62988586 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr3_2:62988571-62988590 None:intergenic 45.0%
TTAGGGTGTGTTTGGATGGA+GGG + chr3_2:62988577-62988596 None:intergenic 45.0%
! TTTAGGGTGTGTTTGGATGG+AGG + chr3_2:62988578-62988597 None:intergenic 45.0%
TATCGCAGGTACTTAGAGGA+TGG - chr3_2:62988606-62988625 Msa0416210:intron 45.0%
! CTTAGAGGATGGACTTCATG+TGG - chr3_2:62988617-62988636 Msa0416210:intron 45.0%
! GATGGACTTCATGTGGAGAA+TGG - chr3_2:62988624-62988643 Msa0416210:intron 45.0%
GGTCAACTCCAAACCCAAAA+TGG + chr3_2:62988755-62988774 None:intergenic 45.0%
AACAGAGCAGAGTGCACAAT+TGG + chr3_2:62988776-62988795 None:intergenic 45.0%
AATTCAAGAACCGGTGGAGT+AGG + chr3_2:62989396-62989415 None:intergenic 45.0%
GAATTTCCTCCTTGCCTGTA+TGG - chr3_2:62989411-62989430 Msa0416210:CDS 45.0%
GACAAAGGCAATGACCATAC+AGG + chr3_2:62989428-62989447 None:intergenic 45.0%
TCATTGCCTTTGTCATCTCC+TGG - chr3_2:62989434-62989453 Msa0416210:CDS 45.0%
AGAGACGCGTGAATTGAACA+TGG + chr3_2:62989566-62989585 None:intergenic 45.0%
!!! TTTTTAATTATTTAGAAAAA+GGG + chr3_2:62987760-62987779 None:intergenic 5.0%
!!! TTTTTTAATTATTTAGAAAA+AGG + chr3_2:62987761-62987780 None:intergenic 5.0%
ACTTGTCTTGTCCTGCGTGA+AGG + chr3_2:62986955-62986974 None:intergenic 50.0%
ATCTCCTCGGAACTCTACAG+CGG - chr3_2:62987012-62987031 Msa0416210:three_prime_UTR 50.0%
GGATTTGGATCTGGAGACTG+TGG - chr3_2:62987096-62987115 Msa0416210:three_prime_UTR 50.0%
TGGGAGTCCCAGATTCATGT+TGG + chr3_2:62987198-62987217 None:intergenic 50.0%
! TCTGGGACTCCCATTGAACT+AGG - chr3_2:62987205-62987224 Msa0416210:CDS 50.0%
! TGAATTTTCGTCCCCAGCTC+TGG + chr3_2:62988212-62988231 None:intergenic 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr3_2:62988566-62988585 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr3_2:62988568-62988587 None:intergenic 50.0%
!! AGTAGGCGTTGAGTTTCTGC+AGG + chr3_2:62989379-62989398 None:intergenic 50.0%
AAACTCAACGCCTACTCCAC+CGG - chr3_2:62989383-62989402 Msa0416210:CDS 50.0%
GGAGGAAATTCAAGAACCGG+TGG + chr3_2:62989402-62989421 None:intergenic 50.0%
CAATGACCATACAGGCAAGG+AGG + chr3_2:62989420-62989439 None:intergenic 50.0%
AGGCAATGACCATACAGGCA+AGG + chr3_2:62989423-62989442 None:intergenic 50.0%
TTCTCCGCTGTAGAGTTCCG+AGG + chr3_2:62987019-62987038 None:intergenic 55.0%
TGGATGGAGGGTTTAGGAGG+GGG + chr3_2:62988565-62988584 None:intergenic 55.0%
CGTTGAGTTTCTGCAGGTGG+GGG + chr3_2:62989373-62989392 None:intergenic 55.0%
GCGTTGAGTTTCTGCAGGTG+GGG + chr3_2:62989374-62989393 None:intergenic 55.0%
! GGCGTTGAGTTTCTGCAGGT+GGG + chr3_2:62989375-62989394 None:intergenic 55.0%
!! AGGCGTTGAGTTTCTGCAGG+TGG + chr3_2:62989376-62989395 None:intergenic 55.0%
TGGAGGGTTTAGGAGGGGGA+GGG + chr3_2:62988561-62988580 None:intergenic 60.0%
ATGGAGGGTTTAGGAGGGGG+AGG + chr3_2:62988562-62988581 None:intergenic 60.0%
TGAGTTTCTGCAGGTGGGGG+AGG + chr3_2:62989370-62989389 None:intergenic 60.0%
GGTGGGGGAGGTCTAGTTGG+TGG + chr3_2:62989358-62989377 None:intergenic 65.0%
GCAGGTGGGGGAGGTCTAGT+TGG + chr3_2:62989361-62989380 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62986740 62989889 62986740 ID=Msa0416210;Name=Msa0416210
chr3_2 mRNA 62986740 62989889 62986740 ID=Msa0416210-mRNA-1;Parent=Msa0416210;Name=Msa0416210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|2|406|213
chr3_2 exon 62986740 62987374 62986740 ID=Msa0416210-mRNA-1:exon:13657;Parent=Msa0416210-mRNA-1
chr3_2 exon 62989327 62989889 62989327 ID=Msa0416210-mRNA-1:exon:13656;Parent=Msa0416210-mRNA-1
chr3_2 five_prime_UTR 62989740 62989889 62989740 ID=Msa0416210-mRNA-1:five_prime_utr;Parent=Msa0416210-mRNA-1
chr3_2 CDS 62989327 62989739 62989327 ID=Msa0416210-mRNA-1:cds;Parent=Msa0416210-mRNA-1
chr3_2 CDS 62987146 62987374 62987146 ID=Msa0416210-mRNA-1:cds;Parent=Msa0416210-mRNA-1
chr3_2 three_prime_UTR 62986740 62987145 62986740 ID=Msa0416210-mRNA-1:three_prime_utr;Parent=Msa0416210-mRNA-1
Gene Sequence

>Msa0416210

ATGATCTCTATCTCCCAAAGCCATGACATGAAGATTCTCAACTTTAGTACCATCGAAAATGTCCTTCACGCAGGACAAGACAAGTCTCACGTTGTTGTTCCCGTCGACAACATTGAAAATGCATCTCCTCGGAACTCTACAGCGGAGAATGTTGGAGTGTGTGAGAAAGAGAGAGTGTCTTCTGTGTCTGTGTCTGAATGTTGTGTGGATTTGGATCTGGAGACTGTGGTTAATGTTGATGATGGTGTGAAGAGAGATTGTAGGATTTGTCATCTCAGTATGGATATGAAAAATCGTGATGATGACCAACATGAATCTGGGACTCCCATTGAACTAGGATGTTCGTGTAAAGATGATTTGGCTGCTGCTCATAAACAATGTGCTGAAGCTTGGTTTAAGGTCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGAAATGTATCTGGTATAGTTGAAGTTGAAATGACAGAACAGTGGAGTGAAGCTAATGATGCATCTGTTCTACCACCAACTAGACCTCCCCCACCTGCAGAAACTCAACGCCTACTCCACCGGTTCTTGAATTTCCTCCTTGCCTGTATGGTCATTGCCTTTGTCATCTCCTGGCTTTTTCGCTTCTATTTGCATTCCTGA

Protein sequence

>Msa0416210

MISISQSHDMKILNFSTIENVLHAGQDKSHVVVPVDNIENASPRNSTAENVGVCEKERVSSVSVSECCVDLDLETVVNVDDGVKRDCRICHLSMDMKNRDDDQHESGTPIELGCSCKDDLAAAHKQCAEAWFKVKGNKTCEICGSIARNVSGIVEVEMTEQWSEANDASVLPPTRPPPPAETQRLLHRFLNFLLACMVIAFVISWLFRFYLHS*