Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168530 | AAZ29734.1 | 98.773 | 326 | 4 | 0 | 1 | 326 | 169 | 494 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168530 | sp|P45734|PALY_TRISU | 97.239 | 326 | 9 | 0 | 1 | 326 | 169 | 494 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168530 | Q1AJZ6 | 98.773 | 326 | 4 | 0 | 1 | 326 | 169 | 494 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0690190 | Msa1168530 | 0.828335 | 9.521961e-55 | -8.615850e-47 |
| Msa0131190 | Msa1168530 | 0.810955 | 8.909974e-51 | -8.615850e-47 |
| Msa1079360 | Msa1168530 | 0.814463 | 1.521053e-51 | -8.615850e-47 |
| Msa1079390 | Msa1168530 | 0.881323 | 2.641596e-70 | -8.615850e-47 |
| Msa1079400 | Msa1168530 | 0.953449 | 2.675305e-111 | -8.615850e-47 |
| Msa1123600 | Msa1168530 | 0.885248 | 9.574668e-72 | -8.615850e-47 |
| Msa1123610 | Msa1168530 | 0.809206 | 2.121733e-50 | -8.615850e-47 |
| Msa1168530 | Msa1168620 | 0.950682 | 9.926055e-109 | -8.615850e-47 |
| Msa1168530 | Msa1168700 | 0.948168 | 1.608766e-106 | -8.615850e-47 |
| Msa1168530 | Msa1168710 | 0.899623 | 1.650595e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168530 | MtrunA17_Chr7g0264351 | 96.933 | 326 | 10 | 0 | 1 | 326 | 168 | 493 | 0.0 | 653 |
| Msa1168530 | MtrunA17_Chr7g0264341 | 96.933 | 326 | 10 | 0 | 1 | 326 | 168 | 493 | 0.0 | 651 |
| Msa1168530 | MtrunA17_Chr7g0264311 | 96.933 | 326 | 10 | 0 | 1 | 326 | 168 | 493 | 0.0 | 651 |
| Msa1168530 | MtrunA17_Chr1g0181091 | 96.319 | 326 | 12 | 0 | 1 | 326 | 156 | 481 | 0.0 | 650 |
| Msa1168530 | MtrunA17_Chr1g0199551 | 84.356 | 326 | 51 | 0 | 1 | 326 | 166 | 491 | 0.0 | 583 |
| Msa1168530 | MtrunA17_Chr5g0448361 | 82.822 | 326 | 55 | 1 | 1 | 326 | 154 | 478 | 0.0 | 560 |
| Msa1168530 | MtrunA17_Chr2g0326921 | 82.875 | 327 | 55 | 1 | 1 | 326 | 140 | 466 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168530 | AT2G37040.1 | 87.117 | 326 | 42 | 0 | 1 | 326 | 169 | 494 | 0.0 | 604 |
| Msa1168530 | AT3G53260.1 | 87.423 | 326 | 41 | 0 | 1 | 326 | 161 | 486 | 0.0 | 601 |
| Msa1168530 | AT3G10340.1 | 88.650 | 326 | 36 | 1 | 1 | 326 | 152 | 476 | 0.0 | 600 |
| Msa1168530 | AT5G04230.1 | 84.049 | 326 | 51 | 1 | 1 | 326 | 149 | 473 | 0.0 | 569 |
| Msa1168530 | AT5G04230.2 | 83.030 | 330 | 51 | 2 | 1 | 326 | 149 | 477 | 0.0 | 563 |
Find 71 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATTATGGAACACATTT+TGG | 0.178379 | 7_4:+61168022 | Msa1168530:CDS |
| TCTCTTTGAGGCTAACATTT+TGG | 0.190344 | 7_4:+61167884 | Msa1168530:CDS |
| GTCCCTCTGTCTTACATTGC+TGG | 0.215263 | 7_4:+61167687 | Msa1168530:CDS |
| AATTGAGGCTGCTGCTATTA+TGG | 0.231999 | 7_4:+61168010 | Msa1168530:CDS |
| CACACTGCTCCAAGGTTATT+CGG | 0.232317 | 7_4:+61167563 | Msa1168530:CDS |
| AGTGCATATCTATCTTGTTT+TGG | 0.270938 | 7_4:-61168104 | Msa1168510:intron |
| AGAAATCCTAGCTTGGATTA+TGG | 0.318763 | 7_4:+61168407 | Msa1168530:CDS |
| AACGGAACAGCCGTTGGTTC+CGG | 0.342001 | 7_4:+61167846 | Msa1168530:CDS |
| CTTTGAACGTGGGTTGTAAC+CGG | 0.365750 | 7_4:-61168491 | Msa1168510:intron |
| AGCTTCTATTGTTCTCTTTG+AGG | 0.369188 | 7_4:+61167872 | Msa1168530:CDS |
| GGGAATTAGATTTGAAATCT+TGG | 0.372469 | 7_4:+61167584 | Msa1168530:CDS |
| ATGGAGTGACGTTGTTGTTA+AGG | 0.373628 | 7_4:-61167623 | Msa1168510:intron |
| TACATTGCTGGATTGCTAAC+CGG | 0.377877 | 7_4:+61167699 | Msa1168530:CDS |
| GATCACAGCTTCAGGAGATT+TGG | 0.382346 | 7_4:+61167665 | Msa1168530:CDS |
| TTATCCATGGATACTCCAAT+AGG | 0.387124 | 7_4:-61168278 | Msa1168510:intron |
| CTACTCGCAGAAAGATTTGA+AGG | 0.395081 | 7_4:-61168386 | Msa1168510:intron |
| GTTACAATATCTTGCAAATC+CGG | 0.407527 | 7_4:+61168472 | Msa1168530:CDS |
| GAAGGTCTTGCACTTGTTAA+CGG | 0.415232 | 7_4:+61167828 | Msa1168530:CDS |
| CGTGGTACGATCACAGCTTC+AGG | 0.422509 | 7_4:+61167657 | Msa1168530:CDS |
| TAGCTTGGATTATGGTTTCA+AGG | 0.427578 | 7_4:+61168415 | Msa1168530:CDS |
| ACAAGTGCAAGACCTTCTTT+TGG | 0.429300 | 7_4:-61167822 | Msa1168510:intron |
| GTCAAATGATCGGTAAATTC+AGG | 0.429420 | 7_4:-61167960 | Msa1168510:intron |
| AGCTTTAGAATTTGATCGTC+CGG | 0.432653 | 7_4:-61167718 | Msa1168510:intron |
| TATCCATGGATACTCCAATA+GGG | 0.436618 | 7_4:-61168277 | Msa1168510:intron |
| TCACATCTTGGTTGTGTGCT+CGG | 0.437697 | 7_4:-61168516 | Msa1168510:intron |
| GAGAACAATAGAAGCTAAAC+CGG | 0.444891 | 7_4:-61167865 | Msa1168510:intron |
| ATATTGTAACTCAGAACAAT+AGG | 0.445191 | 7_4:-61168459 | Msa1168510:intron |
| ATCCATGGATAATACACGTT+TGG | 0.459440 | 7_4:+61168289 | Msa1168530:CDS |
| TTCTTGAAACATCGATCAAA+GGG | 0.473840 | 7_4:-61168220 | Msa1168510:intron |
| TTTGAATTACAACCAAAAGA+AGG | 0.477960 | 7_4:+61167810 | Msa1168530:CDS |
| ACACTGCTCCAAGGTTATTC+GGG | 0.483941 | 7_4:+61167564 | Msa1168530:CDS |
| TGCGAGTAGAAATCCTAGCT+TGG | 0.486374 | 7_4:+61168400 | Msa1168530:CDS |
| AACCCAAAGAGTTCACATCT+TGG | 0.486755 | 7_4:-61168528 | Msa1168510:intron |
| TCTAAAGCTCATGGACCATC+CGG | 0.493757 | 7_4:+61167732 | Msa1168530:CDS |
| TTTCTTGAAACATCGATCAA+AGG | 0.494354 | 7_4:-61168221 | Msa1168510:intron |
| ATCTAATTCCCGAATAACCT+TGG | 0.497406 | 7_4:-61167572 | Msa1168510:intron |
| AGCTTGGATTATGGTTTCAA+GGG | 0.499976 | 7_4:+61168416 | Msa1168530:CDS |
| ACTCCATGTTTACCACTTCG+TGG | 0.503596 | 7_4:+61167639 | Msa1168530:CDS |
| CGATCAAATTCTAAAGCTCA+TGG | 0.519333 | 7_4:+61167723 | Msa1168530:CDS |
| GCATTAAGTATTTCTCCGGA+TGG | 0.520440 | 7_4:-61167747 | Msa1168510:intron |
| AACCCCTATTGGAGTATCCA+TGG | 0.530273 | 7_4:+61168274 | Msa1168530:CDS |
| CGTTTGGCACTCGCATCGAT+TGG | 0.531219 | 7_4:+61168305 | Msa1168530:CDS |
| CAAGGGATCTGAAATTGCCA+TGG | 0.533499 | 7_4:+61168433 | Msa1168530:CDS |
| CAACTTGTGTGTCAAATGAT+CGG | 0.535020 | 7_4:-61167970 | Msa1168510:intron |
| TGCCAAACGTGTATTATCCA+TGG | 0.541802 | 7_4:-61168291 | Msa1168510:intron |
| AGAACTTCACCACAATGGCT+TGG | 0.541972 | 7_4:+61168128 | Msa1168530:CDS |
| CTCAGAACAATAGGAAGCCA+TGG | 0.547791 | 7_4:-61168450 | Msa1168510:intron |
| AATCGAATCACTTCAATCAA+AGG | 0.551824 | 7_4:-61168152 | Msa1168510:intron |
| GTTGTTAAGGAGCTTAGTGA+TGG | 0.555678 | 7_4:-61167610 | Msa1168510:intron |
| TTGAAACCATAATCCAAGCT+AGG | 0.555782 | 7_4:-61168413 | Msa1168510:intron |
| GATCTCTCTCTCAATTGACT+TGG | 0.558820 | 7_4:-61168180 | Msa1168510:intron |
| TCAAGAAACAAAGCTTTGCA+TGG | 0.562486 | 7_4:+61168236 | Msa1168530:CDS |
| TGTGCTCGGCACTTTGAACG+TGG | 0.571965 | 7_4:-61168502 | Msa1168510:intron |
| ACACCACCCTGGTCAAATTG+AGG | 0.572511 | 7_4:+61167995 | Msa1168530:CDS |
| GCAGCAGCCTCAATTTGACC+AGG | 0.576243 | 7_4:-61168002 | Msa1168510:intron |
| ATCAAAGGACCAAGCCATTG+TGG | 0.585110 | 7_4:-61168137 | Msa1168510:intron |
| AGAAGCTAAACCGGAACCAA+CGG | 0.596171 | 7_4:-61167856 | Msa1168510:intron |
| CTTGTTAACGGAACAGCCGT+TGG | 0.598411 | 7_4:+61167840 | Msa1168530:CDS |
| CACTTAGAACTTCACCACAA+TGG | 0.606171 | 7_4:+61168123 | Msa1168530:CDS |
| ATCCATGGATACTCCAATAG+GGG | 0.613815 | 7_4:-61168276 | Msa1168510:intron |
| AGAAACAAAGCTTTGCATGG+TGG | 0.624866 | 7_4:+61168239 | Msa1168530:CDS |
| GTGCTCGGCACTTTGAACGT+GGG | 0.625574 | 7_4:-61168501 | Msa1168510:intron |
| ATCCAGCAATGTAAGACAGA+GGG | 0.626529 | 7_4:-61167689 | Msa1168510:intron |
| TGTGTTGATTCTCACTAGCA+TGG | 0.632917 | 7_4:-61167544 | Msa1168510:intron |
| AGAATCAACACACTGCTCCA+AGG | 0.635657 | 7_4:+61167555 | Msa1168530:CDS |
| GTACCACGAAGTGGTAAACA+TGG | 0.652497 | 7_4:-61167642 | Msa1168510:intron |
| GCTGTGATCGTACCACGAAG+TGG | 0.655564 | 7_4:-61167651 | Msa1168510:intron |
| CACAAGTTGAAACACCACCC+TGG | 0.660975 | 7_4:+61167984 | Msa1168530:CDS |
| CAGCCTCAATTTGACCAGGG+TGG | 0.690386 | 7_4:-61167998 | Msa1168510:intron |
| AATCCAGCAATGTAAGACAG+AGG | 0.700859 | 7_4:-61167690 | Msa1168510:intron |
| CAGCAGCCTCAATTTGACCA+GGG | 0.707184 | 7_4:-61168001 | Msa1168510:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTTGCATTAAGTATTTCTC+CGG | - | chr7_4:61167754-61167773 | Msa1168510:intron | 25.0% |
| ! | TTTGAATTACAACCAAAAGA+AGG | + | chr7_4:61167810-61167829 | Msa1168530:CDS | 25.0% |
| !! | GTCAATGATTTTTACAACAA+TGG | + | chr7_4:61168359-61168378 | Msa1168530:CDS | 25.0% |
| ! | ATATTGTAACTCAGAACAAT+AGG | - | chr7_4:61168462-61168481 | Msa1168510:intron | 25.0% |
| !! | TTTTGCATTAAGTATTTCTC+CGG | - | chr7_4:61167754-61167773 | Msa1168510:intron | 25.0% |
| ! | TTTGAATTACAACCAAAAGA+AGG | + | chr7_4:61167810-61167829 | Msa1168530:CDS | 25.0% |
| !! | GTCAATGATTTTTACAACAA+TGG | + | chr7_4:61168359-61168378 | Msa1168530:CDS | 25.0% |
| ! | ATATTGTAACTCAGAACAAT+AGG | - | chr7_4:61168462-61168481 | Msa1168510:intron | 25.0% |
| ! | GGGAATTAGATTTGAAATCT+TGG | + | chr7_4:61167584-61167603 | Msa1168530:CDS | 30.0% |
| ! | ATTTTTGCTGAAGTTATGCA+AGG | + | chr7_4:61167933-61167952 | Msa1168530:CDS | 30.0% |
| ! | TTTTTGCTGAAGTTATGCAA+GGG | + | chr7_4:61167934-61167953 | Msa1168530:CDS | 30.0% |
| ! | TGCTATTATGGAACACATTT+TGG | + | chr7_4:61168022-61168041 | Msa1168530:CDS | 30.0% |
| ! | ATTATGGAACACATTTTGGA+TGG | + | chr7_4:61168026-61168045 | Msa1168530:CDS | 30.0% |
| !! | AGTGCATATCTATCTTGTTT+TGG | - | chr7_4:61168107-61168126 | Msa1168510:intron | 30.0% |
| AATCGAATCACTTCAATCAA+AGG | - | chr7_4:61168155-61168174 | Msa1168510:intron | 30.0% | |
| TTCTTGAAACATCGATCAAA+GGG | - | chr7_4:61168223-61168242 | Msa1168510:intron | 30.0% | |
| TTTCTTGAAACATCGATCAA+AGG | - | chr7_4:61168224-61168243 | Msa1168510:intron | 30.0% | |
| GTTACAATATCTTGCAAATC+CGG | + | chr7_4:61168472-61168491 | Msa1168530:CDS | 30.0% | |
| ! | GGGAATTAGATTTGAAATCT+TGG | + | chr7_4:61167584-61167603 | Msa1168530:CDS | 30.0% |
| ! | ATTTTTGCTGAAGTTATGCA+AGG | + | chr7_4:61167933-61167952 | Msa1168530:CDS | 30.0% |
| ! | TTTTTGCTGAAGTTATGCAA+GGG | + | chr7_4:61167934-61167953 | Msa1168530:CDS | 30.0% |
| ! | TGCTATTATGGAACACATTT+TGG | + | chr7_4:61168022-61168041 | Msa1168530:CDS | 30.0% |
| ! | ATTATGGAACACATTTTGGA+TGG | + | chr7_4:61168026-61168045 | Msa1168530:CDS | 30.0% |
| !! | AGTGCATATCTATCTTGTTT+TGG | - | chr7_4:61168107-61168126 | Msa1168510:intron | 30.0% |
| AATCGAATCACTTCAATCAA+AGG | - | chr7_4:61168155-61168174 | Msa1168510:intron | 30.0% | |
| TTCTTGAAACATCGATCAAA+GGG | - | chr7_4:61168223-61168242 | Msa1168510:intron | 30.0% | |
| TTTCTTGAAACATCGATCAA+AGG | - | chr7_4:61168224-61168243 | Msa1168510:intron | 30.0% | |
| GTTACAATATCTTGCAAATC+CGG | + | chr7_4:61168472-61168491 | Msa1168530:CDS | 30.0% | |
| ATCTAATTCCCGAATAACCT+TGG | - | chr7_4:61167575-61167594 | Msa1168510:intron | 35.0% | |
| !! | AGCTTTAGAATTTGATCGTC+CGG | - | chr7_4:61167721-61167740 | Msa1168510:intron | 35.0% |
| !! | CGATCAAATTCTAAAGCTCA+TGG | + | chr7_4:61167723-61167742 | Msa1168530:CDS | 35.0% |
| ! | AAAGAAGCTTTTCAATCTGC+TGG | + | chr7_4:61167771-61167790 | Msa1168530:CDS | 35.0% |
| GAGAACAATAGAAGCTAAAC+CGG | - | chr7_4:61167868-61167887 | Msa1168510:intron | 35.0% | |
| AGCTTCTATTGTTCTCTTTG+AGG | + | chr7_4:61167872-61167891 | Msa1168530:CDS | 35.0% | |
| !!! | TCTCTTTGAGGCTAACATTT+TGG | + | chr7_4:61167884-61167903 | Msa1168530:CDS | 35.0% |
| GTCAAATGATCGGTAAATTC+AGG | - | chr7_4:61167963-61167982 | Msa1168510:intron | 35.0% | |
| CAACTTGTGTGTCAAATGAT+CGG | - | chr7_4:61167973-61167992 | Msa1168510:intron | 35.0% | |
| !!! | TCTTGTTTTGGTTTCTGCAA+AGG | - | chr7_4:61168095-61168114 | Msa1168510:intron | 35.0% |
| TCAAGAAACAAAGCTTTGCA+TGG | + | chr7_4:61168236-61168255 | Msa1168530:CDS | 35.0% | |
| !! | TTGCATGGTGGAAATTTTCA+AGG | + | chr7_4:61168251-61168270 | Msa1168530:CDS | 35.0% |
| !! | AATTTTCAAGGAACCCCTAT+TGG | + | chr7_4:61168263-61168282 | Msa1168530:CDS | 35.0% |
| TATCCATGGATACTCCAATA+GGG | - | chr7_4:61168280-61168299 | Msa1168510:intron | 35.0% | |
| TTATCCATGGATACTCCAAT+AGG | - | chr7_4:61168281-61168300 | Msa1168510:intron | 35.0% | |
| ATCCATGGATAATACACGTT+TGG | + | chr7_4:61168289-61168308 | Msa1168530:CDS | 35.0% | |
| AGAAATCCTAGCTTGGATTA+TGG | + | chr7_4:61168407-61168426 | Msa1168530:CDS | 35.0% | |
| TTGAAACCATAATCCAAGCT+AGG | - | chr7_4:61168416-61168435 | Msa1168510:intron | 35.0% | |
| TAGCTTGGATTATGGTTTCA+AGG | + | chr7_4:61168415-61168434 | Msa1168530:CDS | 35.0% | |
| AGCTTGGATTATGGTTTCAA+GGG | + | chr7_4:61168416-61168435 | Msa1168530:CDS | 35.0% | |
| ATCTAATTCCCGAATAACCT+TGG | - | chr7_4:61167575-61167594 | Msa1168510:intron | 35.0% | |
| !! | AGCTTTAGAATTTGATCGTC+CGG | - | chr7_4:61167721-61167740 | Msa1168510:intron | 35.0% |
| !! | CGATCAAATTCTAAAGCTCA+TGG | + | chr7_4:61167723-61167742 | Msa1168530:CDS | 35.0% |
| ! | AAAGAAGCTTTTCAATCTGC+TGG | + | chr7_4:61167771-61167790 | Msa1168530:CDS | 35.0% |
| GAGAACAATAGAAGCTAAAC+CGG | - | chr7_4:61167868-61167887 | Msa1168510:intron | 35.0% | |
| AGCTTCTATTGTTCTCTTTG+AGG | + | chr7_4:61167872-61167891 | Msa1168530:CDS | 35.0% | |
| !!! | TCTCTTTGAGGCTAACATTT+TGG | + | chr7_4:61167884-61167903 | Msa1168530:CDS | 35.0% |
| GTCAAATGATCGGTAAATTC+AGG | - | chr7_4:61167963-61167982 | Msa1168510:intron | 35.0% | |
| CAACTTGTGTGTCAAATGAT+CGG | - | chr7_4:61167973-61167992 | Msa1168510:intron | 35.0% | |
| !!! | TCTTGTTTTGGTTTCTGCAA+AGG | - | chr7_4:61168095-61168114 | Msa1168510:intron | 35.0% |
| TCAAGAAACAAAGCTTTGCA+TGG | + | chr7_4:61168236-61168255 | Msa1168530:CDS | 35.0% | |
| !! | TTGCATGGTGGAAATTTTCA+AGG | + | chr7_4:61168251-61168270 | Msa1168530:CDS | 35.0% |
| !! | AATTTTCAAGGAACCCCTAT+TGG | + | chr7_4:61168263-61168282 | Msa1168530:CDS | 35.0% |
| TATCCATGGATACTCCAATA+GGG | - | chr7_4:61168280-61168299 | Msa1168510:intron | 35.0% | |
| TTATCCATGGATACTCCAAT+AGG | - | chr7_4:61168281-61168300 | Msa1168510:intron | 35.0% | |
| ATCCATGGATAATACACGTT+TGG | + | chr7_4:61168289-61168308 | Msa1168530:CDS | 35.0% | |
| AGAAATCCTAGCTTGGATTA+TGG | + | chr7_4:61168407-61168426 | Msa1168530:CDS | 35.0% | |
| TTGAAACCATAATCCAAGCT+AGG | - | chr7_4:61168416-61168435 | Msa1168510:intron | 35.0% | |
| TAGCTTGGATTATGGTTTCA+AGG | + | chr7_4:61168415-61168434 | Msa1168530:CDS | 35.0% | |
| AGCTTGGATTATGGTTTCAA+GGG | + | chr7_4:61168416-61168435 | Msa1168530:CDS | 35.0% | |
| GTTGTTAAGGAGCTTAGTGA+TGG | - | chr7_4:61167613-61167632 | Msa1168510:intron | 40.0% | |
| ! | ATGGAGTGACGTTGTTGTTA+AGG | - | chr7_4:61167626-61167645 | Msa1168510:intron | 40.0% |
| ATCCAGCAATGTAAGACAGA+GGG | - | chr7_4:61167692-61167711 | Msa1168510:intron | 40.0% | |
| AATCCAGCAATGTAAGACAG+AGG | - | chr7_4:61167693-61167712 | Msa1168510:intron | 40.0% | |
| TACATTGCTGGATTGCTAAC+CGG | + | chr7_4:61167699-61167718 | Msa1168530:CDS | 40.0% | |
| GCATTAAGTATTTCTCCGGA+TGG | - | chr7_4:61167750-61167769 | Msa1168510:intron | 40.0% | |
| ! | ACAAGTGCAAGACCTTCTTT+TGG | - | chr7_4:61167825-61167844 | Msa1168510:intron | 40.0% |
| ! | GAAGGTCTTGCACTTGTTAA+CGG | + | chr7_4:61167828-61167847 | Msa1168530:CDS | 40.0% |
| AATTGAGGCTGCTGCTATTA+TGG | + | chr7_4:61168010-61168029 | Msa1168530:CDS | 40.0% | |
| CACTTAGAACTTCACCACAA+TGG | + | chr7_4:61168123-61168142 | Msa1168530:CDS | 40.0% | |
| GATCTCTCTCTCAATTGACT+TGG | - | chr7_4:61168183-61168202 | Msa1168510:intron | 40.0% | |
| AGAAACAAAGCTTTGCATGG+TGG | + | chr7_4:61168239-61168258 | Msa1168530:CDS | 40.0% | |
| ATCCATGGATACTCCAATAG+GGG | - | chr7_4:61168279-61168298 | Msa1168510:intron | 40.0% | |
| TGCCAAACGTGTATTATCCA+TGG | - | chr7_4:61168294-61168313 | Msa1168510:intron | 40.0% | |
| CTACTCGCAGAAAGATTTGA+AGG | - | chr7_4:61168389-61168408 | Msa1168510:intron | 40.0% | |
| GTTGTTAAGGAGCTTAGTGA+TGG | - | chr7_4:61167613-61167632 | Msa1168510:intron | 40.0% | |
| ! | ATGGAGTGACGTTGTTGTTA+AGG | - | chr7_4:61167626-61167645 | Msa1168510:intron | 40.0% |
| ATCCAGCAATGTAAGACAGA+GGG | - | chr7_4:61167692-61167711 | Msa1168510:intron | 40.0% | |
| AATCCAGCAATGTAAGACAG+AGG | - | chr7_4:61167693-61167712 | Msa1168510:intron | 40.0% | |
| TACATTGCTGGATTGCTAAC+CGG | + | chr7_4:61167699-61167718 | Msa1168530:CDS | 40.0% | |
| GCATTAAGTATTTCTCCGGA+TGG | - | chr7_4:61167750-61167769 | Msa1168510:intron | 40.0% | |
| ! | ACAAGTGCAAGACCTTCTTT+TGG | - | chr7_4:61167825-61167844 | Msa1168510:intron | 40.0% |
| ! | GAAGGTCTTGCACTTGTTAA+CGG | + | chr7_4:61167828-61167847 | Msa1168530:CDS | 40.0% |
| AATTGAGGCTGCTGCTATTA+TGG | + | chr7_4:61168010-61168029 | Msa1168530:CDS | 40.0% | |
| CACTTAGAACTTCACCACAA+TGG | + | chr7_4:61168123-61168142 | Msa1168530:CDS | 40.0% | |
| GATCTCTCTCTCAATTGACT+TGG | - | chr7_4:61168183-61168202 | Msa1168510:intron | 40.0% | |
| AGAAACAAAGCTTTGCATGG+TGG | + | chr7_4:61168239-61168258 | Msa1168530:CDS | 40.0% | |
| ATCCATGGATACTCCAATAG+GGG | - | chr7_4:61168279-61168298 | Msa1168510:intron | 40.0% | |
| TGCCAAACGTGTATTATCCA+TGG | - | chr7_4:61168294-61168313 | Msa1168510:intron | 40.0% | |
| CTACTCGCAGAAAGATTTGA+AGG | - | chr7_4:61168389-61168408 | Msa1168510:intron | 40.0% | |
| AGAATCAACACACTGCTCCA+AGG | + | chr7_4:61167555-61167574 | Msa1168530:CDS | 45.0% | |
| CACACTGCTCCAAGGTTATT+CGG | + | chr7_4:61167563-61167582 | Msa1168530:CDS | 45.0% | |
| ACACTGCTCCAAGGTTATTC+GGG | + | chr7_4:61167564-61167583 | Msa1168530:CDS | 45.0% | |
| ACTCCATGTTTACCACTTCG+TGG | + | chr7_4:61167639-61167658 | Msa1168530:CDS | 45.0% | |
| GTACCACGAAGTGGTAAACA+TGG | - | chr7_4:61167645-61167664 | Msa1168510:intron | 45.0% | |
| GATCACAGCTTCAGGAGATT+TGG | + | chr7_4:61167665-61167684 | Msa1168530:CDS | 45.0% | |
| ! | TCTAAAGCTCATGGACCATC+CGG | + | chr7_4:61167732-61167751 | Msa1168530:CDS | 45.0% |
| AGAAGCTAAACCGGAACCAA+CGG | - | chr7_4:61167859-61167878 | Msa1168510:intron | 45.0% | |
| AGAACTTCACCACAATGGCT+TGG | + | chr7_4:61168128-61168147 | Msa1168530:CDS | 45.0% | |
| ATCAAAGGACCAAGCCATTG+TGG | - | chr7_4:61168140-61168159 | Msa1168510:intron | 45.0% | |
| ! | AACCCCTATTGGAGTATCCA+TGG | + | chr7_4:61168274-61168293 | Msa1168530:CDS | 45.0% |
| TGCGAGTAGAAATCCTAGCT+TGG | + | chr7_4:61168400-61168419 | Msa1168530:CDS | 45.0% | |
| ! | CAAGGGATCTGAAATTGCCA+TGG | + | chr7_4:61168433-61168452 | Msa1168530:CDS | 45.0% |
| CTCAGAACAATAGGAAGCCA+TGG | - | chr7_4:61168453-61168472 | Msa1168510:intron | 45.0% | |
| ! | CTTTGAACGTGGGTTGTAAC+CGG | - | chr7_4:61168494-61168513 | Msa1168510:intron | 45.0% |
| TCACATCTTGGTTGTGTGCT+CGG | - | chr7_4:61168519-61168538 | Msa1168510:intron | 45.0% | |
| AGAATCAACACACTGCTCCA+AGG | + | chr7_4:61167555-61167574 | Msa1168530:CDS | 45.0% | |
| CACACTGCTCCAAGGTTATT+CGG | + | chr7_4:61167563-61167582 | Msa1168530:CDS | 45.0% | |
| ACACTGCTCCAAGGTTATTC+GGG | + | chr7_4:61167564-61167583 | Msa1168530:CDS | 45.0% | |
| ACTCCATGTTTACCACTTCG+TGG | + | chr7_4:61167639-61167658 | Msa1168530:CDS | 45.0% | |
| GTACCACGAAGTGGTAAACA+TGG | - | chr7_4:61167645-61167664 | Msa1168510:intron | 45.0% | |
| GATCACAGCTTCAGGAGATT+TGG | + | chr7_4:61167665-61167684 | Msa1168530:CDS | 45.0% | |
| ! | TCTAAAGCTCATGGACCATC+CGG | + | chr7_4:61167732-61167751 | Msa1168530:CDS | 45.0% |
| AGAAGCTAAACCGGAACCAA+CGG | - | chr7_4:61167859-61167878 | Msa1168510:intron | 45.0% | |
| AGAACTTCACCACAATGGCT+TGG | + | chr7_4:61168128-61168147 | Msa1168530:CDS | 45.0% | |
| ATCAAAGGACCAAGCCATTG+TGG | - | chr7_4:61168140-61168159 | Msa1168510:intron | 45.0% | |
| ! | AACCCCTATTGGAGTATCCA+TGG | + | chr7_4:61168274-61168293 | Msa1168530:CDS | 45.0% |
| TGCGAGTAGAAATCCTAGCT+TGG | + | chr7_4:61168400-61168419 | Msa1168530:CDS | 45.0% | |
| ! | CAAGGGATCTGAAATTGCCA+TGG | + | chr7_4:61168433-61168452 | Msa1168530:CDS | 45.0% |
| CTCAGAACAATAGGAAGCCA+TGG | - | chr7_4:61168453-61168472 | Msa1168510:intron | 45.0% | |
| ! | CTTTGAACGTGGGTTGTAAC+CGG | - | chr7_4:61168494-61168513 | Msa1168510:intron | 45.0% |
| TCACATCTTGGTTGTGTGCT+CGG | - | chr7_4:61168519-61168538 | Msa1168510:intron | 45.0% | |
| GTCCCTCTGTCTTACATTGC+TGG | + | chr7_4:61167687-61167706 | Msa1168530:CDS | 50.0% | |
| CTTGTTAACGGAACAGCCGT+TGG | + | chr7_4:61167840-61167859 | Msa1168530:CDS | 50.0% | |
| ! | CACAAGTTGAAACACCACCC+TGG | + | chr7_4:61167984-61168003 | Msa1168530:CDS | 50.0% |
| ACACCACCCTGGTCAAATTG+AGG | + | chr7_4:61167995-61168014 | Msa1168530:CDS | 50.0% | |
| CAGCAGCCTCAATTTGACCA+GGG | - | chr7_4:61168004-61168023 | Msa1168510:intron | 50.0% | |
| GTCCCTCTGTCTTACATTGC+TGG | + | chr7_4:61167687-61167706 | Msa1168530:CDS | 50.0% | |
| CTTGTTAACGGAACAGCCGT+TGG | + | chr7_4:61167840-61167859 | Msa1168530:CDS | 50.0% | |
| ! | CACAAGTTGAAACACCACCC+TGG | + | chr7_4:61167984-61168003 | Msa1168530:CDS | 50.0% |
| ACACCACCCTGGTCAAATTG+AGG | + | chr7_4:61167995-61168014 | Msa1168530:CDS | 50.0% | |
| CAGCAGCCTCAATTTGACCA+GGG | - | chr7_4:61168004-61168023 | Msa1168510:intron | 50.0% | |
| GCTGTGATCGTACCACGAAG+TGG | - | chr7_4:61167654-61167673 | Msa1168510:intron | 55.0% | |
| CGTGGTACGATCACAGCTTC+AGG | + | chr7_4:61167657-61167676 | Msa1168530:CDS | 55.0% | |
| !! | AACGGAACAGCCGTTGGTTC+CGG | + | chr7_4:61167846-61167865 | Msa1168530:CDS | 55.0% |
| CAGCCTCAATTTGACCAGGG+TGG | - | chr7_4:61168001-61168020 | Msa1168510:intron | 55.0% | |
| GCAGCAGCCTCAATTTGACC+AGG | - | chr7_4:61168005-61168024 | Msa1168510:intron | 55.0% | |
| ! | CGTTTGGCACTCGCATCGAT+TGG | + | chr7_4:61168305-61168324 | Msa1168530:CDS | 55.0% |
| GTGCTCGGCACTTTGAACGT+GGG | - | chr7_4:61168504-61168523 | Msa1168510:intron | 55.0% | |
| TGTGCTCGGCACTTTGAACG+TGG | - | chr7_4:61168505-61168524 | Msa1168510:intron | 55.0% | |
| GCTGTGATCGTACCACGAAG+TGG | - | chr7_4:61167654-61167673 | Msa1168510:intron | 55.0% | |
| CGTGGTACGATCACAGCTTC+AGG | + | chr7_4:61167657-61167676 | Msa1168530:CDS | 55.0% | |
| !! | AACGGAACAGCCGTTGGTTC+CGG | + | chr7_4:61167846-61167865 | Msa1168530:CDS | 55.0% |
| CAGCCTCAATTTGACCAGGG+TGG | - | chr7_4:61168001-61168020 | Msa1168510:intron | 55.0% | |
| GCAGCAGCCTCAATTTGACC+AGG | - | chr7_4:61168005-61168024 | Msa1168510:intron | 55.0% | |
| ! | CGTTTGGCACTCGCATCGAT+TGG | + | chr7_4:61168305-61168324 | Msa1168530:CDS | 55.0% |
| GTGCTCGGCACTTTGAACGT+GGG | - | chr7_4:61168504-61168523 | Msa1168510:intron | 55.0% | |
| TGTGCTCGGCACTTTGAACG+TGG | - | chr7_4:61168505-61168524 | Msa1168510:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 61167546 | 61168538 | 61167546 | ID=Msa1168530;Name=Msa1168530 |
| chr7_4 | mRNA | 61167546 | 61168538 | 61167546 | ID=Msa1168530-mRNA-1;Parent=Msa1168530;Name=Msa1168530-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|330 |
| chr7_4 | exon | 61167546 | 61168538 | 61167546 | ID=Msa1168530-mRNA-1:exon:19310;Parent=Msa1168530-mRNA-1 |
| chr7_4 | CDS | 61167546 | 61168538 | 61167546 | ID=Msa1168530-mRNA-1:cds;Parent=Msa1168530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
