AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169470 MtrunA17_Chr7g0263341 98.371 307 3 1 1 307 1 305 0.0 572
Msa1169470 MtrunA17_Chr1g0192221 51.190 84 35 2 13 91 40 122 9.18e-16 76.3
Msa1169470 MtrunA17_Chr7g0269331 46.429 84 39 2 13 91 9 91 1.31e-12 67.0
Msa1169470 MtrunA17_Chr8g0357591 33.621 116 61 4 13 120 245 352 2.05e-11 64.7
Msa1169470 MtrunA17_Chr7g0272311 44.595 74 36 1 13 81 9 82 8.13e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169470 AT3G53500.2 64.706 255 66 5 1 238 1 248 3.55e-86 260
Msa1169470 AT2G37340.1 81.457 151 22 1 1 151 1 145 6.10e-86 260
Msa1169470 AT2G37340.5 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1169470 AT2G37340.3 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1169470 AT3G53500.1 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1169470 AT3G53500.3 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1169470 AT2G37340.2 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1169470 AT2G37340.6 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1169470 AT2G37340.4 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1169470 AT4G02430.1 50.000 82 36 1 13 89 9 90 1.05e-15 74.3
Msa1169470 AT1G09140.3 50.649 77 33 1 10 81 6 82 4.03e-15 73.9
Msa1169470 AT1G09140.1 50.649 77 33 1 10 81 6 82 4.59e-15 74.3
Msa1169470 AT1G09140.2 50.649 77 33 1 10 81 6 82 5.42e-15 73.9
Msa1169470 AT4G02430.3 50.000 82 36 1 13 89 9 90 7.25e-15 73.6
Msa1169470 AT4G02430.4 50.000 82 36 1 13 89 9 90 8.07e-15 73.9
Msa1169470 AT1G02840.1 48.780 82 37 1 13 89 9 90 4.34e-14 72.0
Msa1169470 AT1G02840.4 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1169470 AT1G02840.5 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1169470 AT1G02840.3 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1169470 AT1G02840.2 48.780 82 37 1 13 89 9 90 9.92e-14 70.5
Msa1169470 AT1G53720.1 31.933 119 68 2 13 123 245 358 3.95e-12 67.0
Msa1169470 AT3G61860.1 32.479 234 124 8 13 216 4 233 9.85e-12 64.7

Find 130 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGATTCTAGGGAATATT+TGG 0.121434 7_4:+62520722 Msa1169470:CDS
CTGCTGCGCCCATTAGCCTT+AGG 0.207621 7_4:-62521507 None:intergenic
CCCGTGATTCTCGGGATTCT+AGG 0.293289 7_4:+62520712 Msa1169470:CDS
TGGGGCTGCGGCTGCGGCTT+CGG 0.294948 7_4:-62521533 None:intergenic
TGGCTAATGTAATAAGAAAA+AGG 0.315290 7_4:-62521892 None:intergenic
TGCTTTAACTGTGGCATTGA+TGG 0.325784 7_4:+62520774 Msa1169470:CDS
ACGAACTCGTTCCCGTGATC+TGG 0.327875 7_4:+62518495 Msa1169470:CDS
CTCGGGGTTCCCGTGATTCT+CGG 0.336974 7_4:+62520703 Msa1169470:CDS
GCGCATCTCCTGGGAATGAT+AGG 0.340026 7_4:+62521400 Msa1169470:CDS
CATCCCTGGGGCTGCGGCTG+CGG 0.349340 7_4:-62521539 None:intergenic
CTATCTTCATTGTCCCTTGA+GGG 0.366692 7_4:-62521483 None:intergenic
CGGGATTCTAGGGAATATTT+GGG 0.369880 7_4:+62520723 Msa1169470:CDS
GAAGCCGCAGCCGCAGCCCC+AGG 0.370362 7_4:+62521535 Msa1169470:CDS
CACTGTAATCAGACCCATCT+TGG 0.371288 7_4:-62521434 None:intergenic
TGGGCTCGAGATTGCAAAGC+TGG 0.378836 7_4:+62520801 Msa1169470:CDS
GGGGCTCCTATCCTCATCCC+TGG 0.383826 7_4:-62521553 None:intergenic
CCTCGCTACGATGATAAGTA+TGG 0.384992 7_4:+62518439 Msa1169470:CDS
ACAGCCCGGCTCGCAGCTAT+AGG 0.385941 7_4:+62521151 Msa1169470:CDS
CGTGATCTATCTGAAGGAAC+TGG 0.392264 7_4:-62521315 None:intergenic
GAGTCCTGAGCTCATTTATA+AGG 0.393196 7_4:-62521632 None:intergenic
CGATCCACTTTCAAAGGGTT+AGG 0.394976 7_4:+62518000 Msa1169470:five_prime_UTR
GAGCGGGTCTTCAGCAGATA+TGG 0.401178 7_4:+62518517 Msa1169470:CDS
TTGGATGGTCGCGATATTGA+TGG 0.402561 7_4:+62519791 Msa1169470:CDS
TGAATGCTTAATGATGCTTA+TGG 0.403520 7_4:+62521708 Msa1169470:three_prime_UTR
TGATGATGCAAGATACAATT+TGG 0.409460 7_4:+62519772 Msa1169470:CDS
GAAGATAGCCCTAAGGCTAA+TGG 0.412338 7_4:+62521498 Msa1169470:CDS
GGGCTCCTATCCTCATCCCT+GGG 0.414164 7_4:-62521552 None:intergenic
ACTGTGGCATTGATGGCCAC+TGG 0.418962 7_4:+62520781 Msa1169470:CDS
CTTATTGTGGAATTTGCAAA+AGG 0.421224 7_4:+62519821 Msa1169470:CDS
CAGCCGCAGCCCCAGGGATG+AGG 0.434071 7_4:+62521542 Msa1169470:CDS
GCTGGAGAACGTGACCTGCC+TGG 0.453809 7_4:-62521066 None:intergenic
TGCTGCGCCCATTAGCCTTA+GGG 0.454836 7_4:-62521506 None:intergenic
TTGTCATCATCCTCCTCTAC+GGG 0.456642 7_4:-62521573 None:intergenic
TTAAAGCAGCGTCCAGATCC+AGG 0.456838 7_4:-62520759 None:intergenic
TCGGGGTTCCCGTGATTCTC+GGG 0.459836 7_4:+62520704 Msa1169470:CDS
GAGATTGCAAAGCTGGGGAT+TGG 0.463497 7_4:+62520808 Msa1169470:CDS
AAGATAGCCCTAAGGCTAAT+GGG 0.465291 7_4:+62521499 Msa1169470:CDS
TTGGGTCGAGGTCCACCTCC+TGG 0.467496 7_4:+62520741 Msa1169470:CDS
CCACAAAAGAGCGCATCTCC+TGG 0.473439 7_4:+62521390 Msa1169470:CDS
TTTAAATCATTCAGGTCCCT+CGG 0.477497 7_4:+62520685 Msa1169470:intron
CTGTGGCATTGATGGCCACT+GGG 0.479381 7_4:+62520782 Msa1169470:CDS
CCGTGATTCTCGGGATTCTA+GGG 0.479447 7_4:+62520713 Msa1169470:CDS
GCTGGAGAACGAGACCTGGC+TGG 0.480780 7_4:-62521084 None:intergenic
CCAGGTCTCGTTCTCCAGCC+AGG 0.481833 7_4:+62521088 Msa1169470:CDS
TTAAATCATTCAGGTCCCTC+GGG 0.489749 7_4:+62520686 Msa1169470:intron
AAAACCTAACCCTTTGAAAG+TGG 0.491426 7_4:-62518004 None:intergenic
GTTGTCATCATCCTCCTCTA+CGG 0.498569 7_4:-62521574 None:intergenic
AGAAGCCGATCCACTTTCAA+AGG 0.501384 7_4:+62517994 Msa1169470:five_prime_UTR
TATCCTCATCCCTGGGGCTG+CGG 0.503485 7_4:-62521545 None:intergenic
TTTCCGCAGCGTTCGAGATG+TGG 0.503829 7_4:+62519535 Msa1169470:intron
CTAGGAGAACGAGACCTGGC+TGG 0.505412 7_4:-62521102 None:intergenic
GGGCTCGAGATTGCAAAGCT+GGG 0.505931 7_4:+62520802 Msa1169470:CDS
CAGCCAGGTCTCGTTCTCCT+AGG 0.514139 7_4:+62521103 Msa1169470:CDS
TTATAAATGAGCTCAGGACT+CGG 0.515566 7_4:+62521634 Msa1169470:three_prime_UTR
AACAAAACATATGAATATCC+TGG 0.516284 7_4:-62521657 None:intergenic
GTGTTTCACGTTCTCCAGGC+AGG 0.517810 7_4:+62521052 Msa1169470:CDS
CCTGGCTGGAGAACGAGACC+TGG 0.518309 7_4:-62521088 None:intergenic
GCAGGTCACGTTCTCCAGCC+AGG 0.518573 7_4:+62521070 Msa1169470:CDS
AGGGTGGTTGCAACCCAAGA+TGG 0.519504 7_4:+62521420 Msa1169470:CDS
TCACGGCTTCTGCCTCTCCT+AGG 0.520626 7_4:-62521120 None:intergenic
ACTGTAATCAGACCCATCTT+GGG 0.521356 7_4:-62521433 None:intergenic
AATGAGCTCAGGACTCGGCC+AGG 0.524548 7_4:+62521639 Msa1169470:three_prime_UTR
TGGCAATACTCGCCTCTATG+TGG 0.526514 7_4:+62518459 Msa1169470:CDS
TGATGGAAGTCGTCTTATTG+TGG 0.526867 7_4:+62519808 Msa1169470:CDS
TCGACTATACTTCCTTGACT+TGG 0.532326 7_4:-62521352 None:intergenic
CACAAAAGAGCGCATCTCCT+GGG 0.532883 7_4:+62521391 Msa1169470:CDS
GCTATCTTCATTGTCCCTTG+AGG 0.536005 7_4:-62521484 None:intergenic
AGAACAAGTGTTACCGCTGT+GGG 0.537145 7_4:+62520832 Msa1169470:CDS
CTATACTTCCTTGACTTGGA+AGG 0.537488 7_4:-62521348 None:intergenic
CCTAGAATCCCGAGAATCAC+GGG 0.537583 7_4:-62520712 None:intergenic
CTCGTTCCCGTGATCTGGAG+CGG 0.539186 7_4:+62518500 Msa1169470:CDS
TATCTTCATTGTCCCTTGAG+GGG 0.543060 7_4:-62521482 None:intergenic
TTATTGTGGAATTTGCAAAA+GGG 0.544758 7_4:+62519822 Msa1169470:CDS
GCAGCCCCAGGGATGAGGAT+AGG 0.545596 7_4:+62521547 Msa1169470:CDS
GGGCTTCGATCTCTTCTGAC+AGG 0.550887 7_4:-62521294 None:intergenic
TGAAGACCCGCTCCAGATCA+CGG 0.552161 7_4:-62518507 None:intergenic
GGCAATACTCGCCTCTATGT+GGG 0.553412 7_4:+62518460 Msa1169470:CDS
TTCTGACAGGAGATCTTGAT+CGG 0.556640 7_4:-62521281 None:intergenic
CAGCGTCCAGATCCAGGAGG+TGG 0.557824 7_4:-62520753 None:intergenic
GGGTGGTTGCAACCCAAGAT+GGG 0.557970 7_4:+62521421 Msa1169470:CDS
TCTAGGGAATATTTGGGTCG+AGG 0.558291 7_4:+62520729 Msa1169470:CDS
TTCCTTGACTTGGAAGGCGG+AGG 0.565604 7_4:-62521342 None:intergenic
CGCATCTCCTGGGAATGATA+GGG 0.566420 7_4:+62521401 Msa1169470:CDS
GGATAGGAGCCCCGTAGAGG+AGG 0.567283 7_4:+62521563 Msa1169470:CDS
ACTGACCTATAGCTGCGAGC+CGG 0.569164 7_4:-62521156 None:intergenic
CCCTAGAATCCCGAGAATCA+CGG 0.570993 7_4:-62520713 None:intergenic
AAGCCGCAGCCGCAGCCCCA+GGG 0.571588 7_4:+62521536 Msa1169470:CDS
GAAGACCCGCTCCAGATCAC+GGG 0.572455 7_4:-62518506 None:intergenic
CTAACCCTTTGAAAGTGGAT+CGG 0.574194 7_4:-62517999 None:intergenic
TATTGTGGAATTTGCAAAAG+GGG 0.575734 7_4:+62519823 Msa1169470:CDS
GAAGCCGATCCACTTTCAAA+GGG 0.576229 7_4:+62517995 Msa1169470:five_prime_UTR
AATAAGGATTGGTACCTTGG+AGG 0.577956 7_4:-62518036 None:intergenic
TGTTACCGCTGTGGGGAGAG+AGG 0.579057 7_4:+62520840 Msa1169470:CDS
GAAGAGCAGAAGCCCCTCAA+GGG 0.580119 7_4:+62521470 Msa1169470:CDS
TGAAGAGCAGAAGCCCCTCA+AGG 0.584992 7_4:+62521469 Msa1169470:CDS
GTCCTCCGCCTTCCAAGTCA+AGG 0.589515 7_4:+62521340 Msa1169470:CDS
GTGATCTATCTGAAGGAACT+GGG 0.591868 7_4:-62521314 None:intergenic
TCTCCTAGGAGAACGAGACC+TGG 0.593532 7_4:-62521106 None:intergenic
GCAACCACCCTATCATTCCC+AGG 0.596323 7_4:-62521408 None:intergenic
ACAATTGTTGCAACCAACAG+AGG 0.600917 7_4:-62521771 None:intergenic
TACTTCCTTGACTTGGAAGG+CGG 0.601572 7_4:-62521345 None:intergenic
AAGACAAACGACCCACATAG+AGG 0.604217 7_4:-62518471 None:intergenic
CCGTGACAGAAGCTACAGCC+CGG 0.604984 7_4:+62521137 Msa1169470:CDS
GGCTCGAGATTGCAAAGCTG+GGG 0.605985 7_4:+62520803 Msa1169470:CDS
GAGAATCACGGGAACCCCGA+GGG 0.610115 7_4:-62520701 None:intergenic
CAGTTCCTTCAGATAGATCA+CGG 0.612374 7_4:+62521316 Msa1169470:CDS
GATGCAAGATACAATTTGGA+TGG 0.614822 7_4:+62519776 Msa1169470:CDS
TCTGGACGCTGCTTTAACTG+TGG 0.621834 7_4:+62520765 Msa1169470:CDS
CCGGGCTGTAGCTTCTGTCA+CGG 0.626094 7_4:-62521137 None:intergenic
GGACAATGAAGATAGCCCTA+AGG 0.628195 7_4:+62521491 Msa1169470:CDS
GATATAAATAGTGAAACGCA+TGG 0.631829 7_4:+62517969 Msa1169470:five_prime_UTR
AGGTCTCGTTCTCCTAGGAG+AGG 0.635451 7_4:+62521108 Msa1169470:CDS
TAAATCATTCAGGTCCCTCG+GGG 0.636009 7_4:+62520687 Msa1169470:intron
ATCTCCTGGGAATGATAGGG+TGG 0.637023 7_4:+62521404 Msa1169470:CDS
GATGGGTCTGATTACAGTGA+TGG 0.645059 7_4:+62521438 Msa1169470:CDS
AAGAACAAGTGTTACCGCTG+TGG 0.645882 7_4:+62520831 Msa1169470:CDS
TGAGGATAGGAGCCCCGTAG+AGG 0.657043 7_4:+62521560 Msa1169470:CDS
AGGGTAAGAACTTACAACAA+AGG 0.661425 7_4:-62519576 None:intergenic
GGGTCTTCAGCAGATATGGA+AGG 0.663027 7_4:+62518521 Msa1169470:CDS
GGCTCCTATCCTCATCCCTG+GGG 0.667502 7_4:-62521551 None:intergenic
AAGTATAGTCGATCTCCTGA+AGG 0.670998 7_4:+62521363 Msa1169470:CDS
CTTGCATCATCAGCATCTCG+AGG 0.683904 7_4:-62519761 None:intergenic
CGAGAATCACGGGAACCCCG+AGG 0.694715 7_4:-62520702 None:intergenic
TGTCATCATCCTCCTCTACG+GGG 0.697101 7_4:-62521572 None:intergenic
CTTTGCAATCTCGAGCCCAG+TGG 0.704739 7_4:-62520797 None:intergenic
ATGCTTATGGTTATGAACAA+CGG 0.706115 7_4:+62521721 Msa1169470:three_prime_UTR
GAACAAGTGTTACCGCTGTG+GGG 0.707356 7_4:+62520833 Msa1169470:CDS
CCATACTTATCATCGTAGCG+AGG 0.710626 7_4:-62518439 None:intergenic
TATGACCTCTCTCCCCACAG+CGG 0.773660 7_4:-62520845 None:intergenic
AAGCAGCGTCCAGATCCAGG+AGG 0.786991 7_4:-62520756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAAAATAAAAAATTAAAT+GGG - chr7_4:62518102-62518121 None:intergenic 10.0%
!! TGGAAAAATAAAAAATTAAA+TGG - chr7_4:62518103-62518122 None:intergenic 10.0%
!!! TTAATTTTTTATTTTTCCAT+CGG + chr7_4:62518104-62518123 Msa1169470:intron 10.0%
!! ATAAAAAATTAAATGGGAAT+AGG - chr7_4:62518096-62518115 None:intergenic 15.0%
!! AATAAAAAAGTAACAAAACA+GGG - chr7_4:62519604-62519623 None:intergenic 15.0%
!! AAATAAAAAAGTAACAAAAC+AGG - chr7_4:62519605-62519624 None:intergenic 15.0%
!! TTTCAAATATAAGCAAAAAT+TGG + chr7_4:62520059-62520078 Msa1169470:intron 15.0%
!!! TATGAATTTTGTTCAAAATT+AGG + chr7_4:62520138-62520157 Msa1169470:intron 15.0%
!! AACAAAAATTGTTCAAATAA+AGG - chr7_4:62520177-62520196 None:intergenic 15.0%
!!! TTTTTGTTTTTATTTGATTC+CGG + chr7_4:62520189-62520208 Msa1169470:intron 15.0%
!! AAAAGCCTAAATATATATTA+TGG - chr7_4:62520269-62520288 None:intergenic 15.0%
!!! TGTTCTTTTAAATTTCTATT+GGG + chr7_4:62520339-62520358 Msa1169470:intron 15.0%
!!! ATTTAACTTTGTAAATTTCA+AGG + chr7_4:62520393-62520412 Msa1169470:intron 15.0%
!!! TTTAACTTTGTAAATTTCAA+GGG + chr7_4:62520394-62520413 Msa1169470:intron 15.0%
!! TAGGAAAATGAAATTGAATT+GGG - chr7_4:62518077-62518096 None:intergenic 20.0%
!! ATAGGAAAATGAAATTGAAT+TGG - chr7_4:62518078-62518097 None:intergenic 20.0%
!! ATCAAATTTAAATCGAAAAC+CGG - chr7_4:62518222-62518241 None:intergenic 20.0%
!!! ATGCTCGTAATTTTTTTTTT+GGG + chr7_4:62518278-62518297 Msa1169470:intron 20.0%
!!! TTTTTTAACCAGTTTATGAA+TGG + chr7_4:62518752-62518771 Msa1169470:intron 20.0%
!!! ATAATTTTCCATTCATAAAC+TGG - chr7_4:62518763-62518782 None:intergenic 20.0%
!!! AATGTTATTGTGTGTTTTTA+TGG + chr7_4:62519408-62519427 Msa1169470:intron 20.0%
!! GAGACATATAACAAAAAAAA+AGG - chr7_4:62519880-62519899 None:intergenic 20.0%
!!! TCTTTTATAATTAGCTTTCA+AGG + chr7_4:62519898-62519917 Msa1169470:intron 20.0%
!!! TGCTTATATTTGAAATCAAA+AGG - chr7_4:62520054-62520073 None:intergenic 20.0%
!! TTGACCAAATTCATAAAATT+TGG - chr7_4:62520109-62520128 None:intergenic 20.0%
!! TACTGCCATAATATATATTT+AGG + chr7_4:62520261-62520280 Msa1169470:intron 20.0%
!!! CTGTTCTTTTAAATTTCTAT+TGG + chr7_4:62520338-62520357 Msa1169470:intron 20.0%
!! TTAACTTTGTAAATTTCAAG+GGG + chr7_4:62520395-62520414 Msa1169470:intron 20.0%
!!! TCTGTTGTCTTTTATTTTTA+TGG + chr7_4:62520559-62520578 Msa1169470:intron 20.0%
!! TTTACTTATAAGCTGAAAAT+TGG + chr7_4:62521239-62521258 Msa1169470:intron 20.0%
!! TTACTTATAAGCTGAAAATT+GGG + chr7_4:62521240-62521259 Msa1169470:intron 20.0%
!! ATAAGGAAAAATACTTCTTA+AGG - chr7_4:62521618-62521637 None:intergenic 20.0%
!! ATTAAGCATTCAAAAAAAGA+TGG - chr7_4:62521700-62521719 None:intergenic 20.0%
!!! TTAAATTTTTAAACCTCTGT+TGG + chr7_4:62521758-62521777 Msa1169470:three_prime_UTR 20.0%
!!! ATAATAGCACTATTTTTCAT+TGG - chr7_4:62521915-62521934 None:intergenic 20.0%
!!! AATGAAAAATAGTGCTATTA+TGG + chr7_4:62521914-62521933 Msa1169470:three_prime_UTR 20.0%
! AGGAAAATGAAATTGAATTG+GGG - chr7_4:62518076-62518095 None:intergenic 25.0%
! CAAAAAAAAAATTACGAGCA+TGG - chr7_4:62518279-62518298 None:intergenic 25.0%
!!! CATGCTCGTAATTTTTTTTT+TGG + chr7_4:62518277-62518296 Msa1169470:intron 25.0%
! TGCAATCAATAATTGAATCT+GGG - chr7_4:62518395-62518414 None:intergenic 25.0%
! ATGCAATCAATAATTGAATC+TGG - chr7_4:62518396-62518415 None:intergenic 25.0%
! CCAATTTAAACAATTGTGAA+TGG - chr7_4:62518582-62518601 None:intergenic 25.0%
! CCATTCACAATTGTTTAAAT+TGG + chr7_4:62518579-62518598 Msa1169470:intron 25.0%
! AAAAGACAAAAATTGCATAG+AGG - chr7_4:62518610-62518629 None:intergenic 25.0%
! TCATAAACTGGTTAAAAAAC+TGG - chr7_4:62518751-62518770 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr7_4:62518863-62518882 None:intergenic 25.0%
! AACTTAAATGATCTTGTTGA+AGG + chr7_4:62519271-62519290 Msa1169470:intron 25.0%
!!! ATTGTGTGTTTTTATGGAAT+TGG + chr7_4:62519414-62519433 Msa1169470:intron 25.0%
! TTATTGTGGAATTTGCAAAA+GGG + chr7_4:62519822-62519841 Msa1169470:CDS 25.0%
!!! AGGAGTTTTTTTGTTTTGTT+TGG + chr7_4:62519918-62519937 Msa1169470:intron 25.0%
! TATAAGCAAAAATTGGTCAA+AGG + chr7_4:62520066-62520085 Msa1169470:intron 25.0%
! TCAAAGGAAGTTTATGAATT+TGG + chr7_4:62520082-62520101 Msa1169470:intron 25.0%
!! TGGTCCAAATTTTATGAATT+TGG + chr7_4:62520102-62520121 Msa1169470:intron 25.0%
! TCAAATAAAGGTGATGAATT+TGG - chr7_4:62520165-62520184 None:intergenic 25.0%
! ATAGTATTGTCAATTTGCAA+GGG + chr7_4:62520214-62520233 Msa1169470:intron 25.0%
! TAACTTTGTAAATTTCAAGG+GGG + chr7_4:62520396-62520415 Msa1169470:intron 25.0%
! TTACTTTATGACAACATTGT+TGG + chr7_4:62520536-62520555 Msa1169470:intron 25.0%
!!! TCATGTTGCTATTTTTCTTT+TGG + chr7_4:62520660-62520679 Msa1169470:intron 25.0%
!!! CATGTTGCTATTTTTCTTTT+GGG + chr7_4:62520661-62520680 Msa1169470:intron 25.0%
! AAATTGAAATCATCAGTTGA+AGG - chr7_4:62521003-62521022 None:intergenic 25.0%
! AAAAATACTTCTTAAGGTGA+TGG - chr7_4:62521612-62521631 None:intergenic 25.0%
! AACAAAACATATGAATATCC+TGG - chr7_4:62521660-62521679 None:intergenic 25.0%
! TGGCTAATGTAATAAGAAAA+AGG - chr7_4:62521895-62521914 None:intergenic 25.0%
GATATAAATAGTGAAACGCA+TGG + chr7_4:62517969-62517988 Msa1169470:five_prime_UTR 30.0%
TTGGGAATGGAATGATTAAA+GGG - chr7_4:62518168-62518187 None:intergenic 30.0%
ATTGGGAATGGAATGATTAA+AGG - chr7_4:62518169-62518188 None:intergenic 30.0%
! ATCTTCTCTTTTTCTCTTGA+TGG - chr7_4:62518333-62518352 None:intergenic 30.0%
!! GTTGTTTTCATAACCTATGT+TGG + chr7_4:62519002-62519021 Msa1169470:intron 30.0%
TTTCATAAGTTCTCCAACAT+AGG - chr7_4:62519018-62519037 None:intergenic 30.0%
TTCCCCTAACTTTAGATATA+GGG - chr7_4:62519153-62519172 None:intergenic 30.0%
TTTCCCCTAACTTTAGATAT+AGG - chr7_4:62519154-62519173 None:intergenic 30.0%
AAAGTTAGGGGAAAATATAC+AGG + chr7_4:62519160-62519179 Msa1169470:intron 30.0%
!!! TTCTTTCCAAGCTTTGTTTT+GGG + chr7_4:62519183-62519202 Msa1169470:intron 30.0%
AAGTTAAAAATGACACCTGT+GGG - chr7_4:62519256-62519275 None:intergenic 30.0%
TAAGTTAAAAATGACACCTG+TGG - chr7_4:62519257-62519276 None:intergenic 30.0%
! ATGATCTTGTTGAAGGTTTT+TGG + chr7_4:62519278-62519297 Msa1169470:intron 30.0%
! TGATCTTGTTGAAGGTTTTT+GGG + chr7_4:62519279-62519298 Msa1169470:intron 30.0%
TTCCAGTAGTTAAGTAATGA+TGG + chr7_4:62519491-62519510 Msa1169470:intron 30.0%
AATGGTTTCCATAAACAGTA+AGG - chr7_4:62519517-62519536 None:intergenic 30.0%
AAAGTAACAAAACAGGGAAA+GGG - chr7_4:62519598-62519617 None:intergenic 30.0%
AAAAGTAACAAAACAGGGAA+AGG - chr7_4:62519599-62519618 None:intergenic 30.0%
ATTCCTGCTCAAAATATGTA+AGG - chr7_4:62519733-62519752 None:intergenic 30.0%
! TGATGATGCAAGATACAATT+TGG + chr7_4:62519772-62519791 Msa1169470:CDS 30.0%
CTTATTGTGGAATTTGCAAA+AGG + chr7_4:62519821-62519840 Msa1169470:CDS 30.0%
TATTGTGGAATTTGCAAAAG+GGG + chr7_4:62519823-62519842 Msa1169470:CDS 30.0%
TCGTCAAATATATACATGGA+TGG - chr7_4:62519996-62520015 None:intergenic 30.0%
ACACTCGTCAAATATATACA+TGG - chr7_4:62520000-62520019 None:intergenic 30.0%
CAAATTGACAATACTATCTC+CGG - chr7_4:62520211-62520230 None:intergenic 30.0%
GATAGTATTGTCAATTTGCA+AGG + chr7_4:62520213-62520232 Msa1169470:intron 30.0%
!! AGTTCACTATTCTTGCTTTT+TGG + chr7_4:62520309-62520328 Msa1169470:intron 30.0%
AAGTCTTCTTTCATCTTCAA+GGG - chr7_4:62520370-62520389 None:intergenic 30.0%
AAAGTCTTCTTTCATCTTCA+AGG - chr7_4:62520371-62520390 None:intergenic 30.0%
TTATGCTTTACTTTGACTGT+TGG + chr7_4:62520589-62520608 Msa1169470:intron 30.0%
CAACATGATCAGAAATACTA+GGG - chr7_4:62520648-62520667 None:intergenic 30.0%
!!! TTTTGGGCTTTAAATCATTC+AGG + chr7_4:62520677-62520696 Msa1169470:intron 30.0%
AGAACAGTCCAAAAAAATTG+AGG + chr7_4:62520883-62520902 Msa1169470:CDS 30.0%
ATTGCAACAATGCTTTCTAA+TGG + chr7_4:62520967-62520986 Msa1169470:intron 30.0%
! TTTTCCTTATAAATGAGCTC+AGG + chr7_4:62521628-62521647 Msa1169470:three_prime_UTR 30.0%
TGAATGCTTAATGATGCTTA+TGG + chr7_4:62521708-62521727 Msa1169470:three_prime_UTR 30.0%
ATGCTTATGGTTATGAACAA+CGG + chr7_4:62521721-62521740 Msa1169470:three_prime_UTR 30.0%
! AAAACCTAACCCTTTGAAAG+TGG - chr7_4:62518007-62518026 None:intergenic 35.0%
! CTTTCAAAGGGTTAGGTTTT+CGG + chr7_4:62518007-62518026 Msa1169470:five_prime_UTR 35.0%
AGAGAGAAGAGAATAAGGAT+TGG - chr7_4:62518050-62518069 None:intergenic 35.0%
GGAAAAGAGAGAAGAGAATA+AGG - chr7_4:62518055-62518074 None:intergenic 35.0%
TTAAAGGGTGAGTCAATTGA+AGG - chr7_4:62518153-62518172 None:intergenic 35.0%
ATGAAATTGGGAATTGGGAA+TGG - chr7_4:62518181-62518200 None:intergenic 35.0%
GATCGATGAAATTGGGAATT+GGG - chr7_4:62518186-62518205 None:intergenic 35.0%
CAATTCCCAATTTCATCGAT+CGG + chr7_4:62518185-62518204 Msa1169470:intron 35.0%
ACAAACCGATCGATGAAATT+GGG - chr7_4:62518193-62518212 None:intergenic 35.0%
TACAAACCGATCGATGAAAT+TGG - chr7_4:62518194-62518213 None:intergenic 35.0%
TCTCATTCCTAGACTATTAG+AGG + chr7_4:62518684-62518703 Msa1169470:intron 35.0%
AACCTAGCTAGATTAGTGAT+AGG + chr7_4:62518809-62518828 Msa1169470:intron 35.0%
AACCTATCACTAATCTAGCT+AGG - chr7_4:62518814-62518833 None:intergenic 35.0%
AGCTAGATTAGTGATAGGTT+TGG + chr7_4:62518814-62518833 Msa1169470:intron 35.0%
TTATTTGCAGCTTATAGCAC+AGG + chr7_4:62518878-62518897 Msa1169470:intron 35.0%
CTTTAGATATAGGGCCTATT+TGG - chr7_4:62519144-62519163 None:intergenic 35.0%
! TAGGCCCTATATCTAAAGTT+AGG + chr7_4:62519146-62519165 Msa1169470:intron 35.0%
! AGGCCCTATATCTAAAGTTA+GGG + chr7_4:62519147-62519166 Msa1169470:intron 35.0%
!!! GTTCTTTCCAAGCTTTGTTT+TGG + chr7_4:62519182-62519201 Msa1169470:intron 35.0%
! TTTTGGGCTTGGATTTATGT+TGG + chr7_4:62519199-62519218 Msa1169470:intron 35.0%
TTATACCTCATGTTATGCGT+GGG + chr7_4:62519222-62519241 Msa1169470:intron 35.0%
!!! TTTTGGGTTTTCACTAAACC+CGG + chr7_4:62519295-62519314 Msa1169470:intron 35.0%
ATTACACCAAGATTACACCA+AGG - chr7_4:62519342-62519361 None:intergenic 35.0%
! TGGTGTAATCTTGGTGTAAT+TGG + chr7_4:62519342-62519361 Msa1169470:intron 35.0%
! TGTAATCTTGGTGTAATTGG+TGG + chr7_4:62519345-62519364 Msa1169470:intron 35.0%
AATTGGCAACAATCACAAAC+TGG + chr7_4:62519431-62519450 Msa1169470:intron 35.0%
! AATGATGGCCTTACTGTTTA+TGG + chr7_4:62519506-62519525 Msa1169470:intron 35.0%
AGGGTAAGAACTTACAACAA+AGG - chr7_4:62519579-62519598 None:intergenic 35.0%
!! GTTCCTTACATATTTTGAGC+AGG + chr7_4:62519727-62519746 Msa1169470:intron 35.0%
GATGCAAGATACAATTTGGA+TGG + chr7_4:62519776-62519795 Msa1169470:CDS 35.0%
AAGGGGTAGGAATTAATTTC+CGG + chr7_4:62519840-62519859 Msa1169470:intron 35.0%
! AAAGGTGTAATAAGTACAGC+CGG - chr7_4:62519862-62519881 None:intergenic 35.0%
!! TAGTGAACTCTAAGACACTA+AGG - chr7_4:62520298-62520317 None:intergenic 35.0%
GGTTTACTAGCGCTTTATAA+TGG + chr7_4:62520417-62520436 Msa1169470:intron 35.0%
TTATGCTGCTATATAGCAAG+AGG - chr7_4:62520467-62520486 None:intergenic 35.0%
GCAACATGATCAGAAATACT+AGG - chr7_4:62520649-62520668 None:intergenic 35.0%
TTTAAATCATTCAGGTCCCT+CGG + chr7_4:62520685-62520704 Msa1169470:intron 35.0%
CAGTCCAAAAAAATTGAGGT+AGG + chr7_4:62520887-62520906 Msa1169470:intron 35.0%
!!! ATGGCCTACCTCAATTTTTT+TGG - chr7_4:62520894-62520913 None:intergenic 35.0%
AAAAAAATTGAGGTAGGCCA+TGG + chr7_4:62520893-62520912 Msa1169470:intron 35.0%
TTATAAATGAGCTCAGGACT+CGG + chr7_4:62521634-62521653 Msa1169470:three_prime_UTR 35.0%
! CTAACCCTTTGAAAGTGGAT+CGG - chr7_4:62518002-62518021 None:intergenic 40.0%
! AATAAGGATTGGTACCTTGG+AGG - chr7_4:62518039-62518058 None:intergenic 40.0%
! GAGAATAAGGATTGGTACCT+TGG - chr7_4:62518042-62518061 None:intergenic 40.0%
CATGCAATTACAAGATCCGA+TGG - chr7_4:62518123-62518142 None:intergenic 40.0%
CGATCGATGAAATTGGGAAT+TGG - chr7_4:62518187-62518206 None:intergenic 40.0%
!! TCGATCGGTTTGTATTTCTC+CGG + chr7_4:62518200-62518219 Msa1169470:intron 40.0%
GTTCTATCACATTCCATGTC+TGG + chr7_4:62518654-62518673 Msa1169470:intron 40.0%
ATGAGATACACAACCAGACA+TGG - chr7_4:62518670-62518689 None:intergenic 40.0%
ATCCCAAACCTTGTGTTTGT+CGG + chr7_4:62518709-62518728 Msa1169470:intron 40.0%
ATCCGACAAACACAAGGTTT+GGG - chr7_4:62518714-62518733 None:intergenic 40.0%
AATCCGACAAACACAAGGTT+TGG - chr7_4:62518715-62518734 None:intergenic 40.0%
GAACAAATCCGACAAACACA+AGG - chr7_4:62518720-62518739 None:intergenic 40.0%
ATTAGTGATAGGTTTGGCCT+GGG + chr7_4:62518820-62518839 Msa1169470:intron 40.0%
TCAACTACGCCAATCCAAAT+AGG + chr7_4:62519127-62519146 Msa1169470:intron 40.0%
GATATAGGGCCTATTTGGAT+TGG - chr7_4:62519139-62519158 None:intergenic 40.0%
! GGCCCTATATCTAAAGTTAG+GGG + chr7_4:62519148-62519167 Msa1169470:intron 40.0%
GTTATACCTCATGTTATGCG+TGG + chr7_4:62519221-62519240 Msa1169470:intron 40.0%
AAAATGACACCTGTGGGATA+CGG - chr7_4:62519250-62519269 None:intergenic 40.0%
! TGGTGTTTAGTTCGTCTTTG+AGG + chr7_4:62519451-62519470 Msa1169470:intron 40.0%
! GGTGTTTAGTTCGTCTTTGA+GGG + chr7_4:62519452-62519471 Msa1169470:intron 40.0%
! GTGTTTAGTTCGTCTTTGAG+GGG + chr7_4:62519453-62519472 Msa1169470:intron 40.0%
GGCCATCATTACTTAACTAC+TGG - chr7_4:62519496-62519515 None:intergenic 40.0%
AGATAATAGAAGCCGCCTTT+GGG - chr7_4:62519655-62519674 None:intergenic 40.0%
TAGATAATAGAAGCCGCCTT+TGG - chr7_4:62519656-62519675 None:intergenic 40.0%
! TGATGGAAGTCGTCTTATTG+TGG + chr7_4:62519808-62519827 Msa1169470:CDS 40.0%
! CTAAAGCATCAGCATTAGAC+AGG - chr7_4:62519949-62519968 None:intergenic 40.0%
CTAGCGCTTTATAATGGCTT+TGG + chr7_4:62520423-62520442 Msa1169470:intron 40.0%
TTAAATCATTCAGGTCCCTC+GGG + chr7_4:62520686-62520705 Msa1169470:intron 40.0%
! TCGGGATTCTAGGGAATATT+TGG + chr7_4:62520722-62520741 Msa1169470:CDS 40.0%
! CGGGATTCTAGGGAATATTT+GGG + chr7_4:62520723-62520742 Msa1169470:CDS 40.0%
! TGCTTTAACTGTGGCATTGA+TGG + chr7_4:62520774-62520793 Msa1169470:CDS 40.0%
TTAAGATTACAGCACCAGCT+TGG - chr7_4:62520929-62520948 None:intergenic 40.0%
TTCTGACAGGAGATCTTGAT+CGG - chr7_4:62521284-62521303 None:intergenic 40.0%
GTGATCTATCTGAAGGAACT+GGG - chr7_4:62521317-62521336 None:intergenic 40.0%
CAGTTCCTTCAGATAGATCA+CGG + chr7_4:62521316-62521335 Msa1169470:CDS 40.0%
!! CTATACTTCCTTGACTTGGA+AGG - chr7_4:62521351-62521370 None:intergenic 40.0%
TCGACTATACTTCCTTGACT+TGG - chr7_4:62521355-62521374 None:intergenic 40.0%
AAGTATAGTCGATCTCCTGA+AGG + chr7_4:62521363-62521382 Msa1169470:CDS 40.0%
ACTGTAATCAGACCCATCTT+GGG - chr7_4:62521436-62521455 None:intergenic 40.0%
TATCTTCATTGTCCCTTGAG+GGG - chr7_4:62521485-62521504 None:intergenic 40.0%
CTATCTTCATTGTCCCTTGA+GGG - chr7_4:62521486-62521505 None:intergenic 40.0%
AAGATAGCCCTAAGGCTAAT+GGG + chr7_4:62521499-62521518 Msa1169470:CDS 40.0%
GAGTCCTGAGCTCATTTATA+AGG - chr7_4:62521635-62521654 None:intergenic 40.0%
ACAATTGTTGCAACCAACAG+AGG - chr7_4:62521774-62521793 None:intergenic 40.0%
AGAAGCCGATCCACTTTCAA+AGG + chr7_4:62517994-62518013 Msa1169470:five_prime_UTR 45.0%
GAAGCCGATCCACTTTCAAA+GGG + chr7_4:62517995-62518014 Msa1169470:five_prime_UTR 45.0%
CGATCCACTTTCAAAGGGTT+AGG + chr7_4:62518000-62518019 Msa1169470:five_prime_UTR 45.0%
CCATACTTATCATCGTAGCG+AGG - chr7_4:62518442-62518461 None:intergenic 45.0%
CCTCGCTACGATGATAAGTA+TGG + chr7_4:62518439-62518458 Msa1169470:CDS 45.0%
AAGACAAACGACCCACATAG+AGG - chr7_4:62518474-62518493 None:intergenic 45.0%
GGGATCTCCTCTAATAGTCT+AGG - chr7_4:62518694-62518713 None:intergenic 45.0%
CAAAGTGACACAAGGAGACA+TGG - chr7_4:62518788-62518807 None:intergenic 45.0%
CTAGGTTGCAAAGTGACACA+AGG - chr7_4:62518796-62518815 None:intergenic 45.0%
GATTAGTGATAGGTTTGGCC+TGG + chr7_4:62518819-62518838 Msa1169470:intron 45.0%
TTAGTGATAGGTTTGGCCTG+GGG + chr7_4:62518821-62518840 Msa1169470:intron 45.0%
!!! TCCAAGCTTTGTTTTGGGCT+TGG + chr7_4:62519188-62519207 Msa1169470:intron 45.0%
TCCAAGCCCAAAACAAAGCT+TGG - chr7_4:62519192-62519211 None:intergenic 45.0%
!! TCCTACCTGAGTGTTGACTT+TGG + chr7_4:62519372-62519391 Msa1169470:intron 45.0%
AATCGCCAAAGTCAACACTC+AGG - chr7_4:62519380-62519399 None:intergenic 45.0%
ATGTTCATTGCTCTGCCCAA+AGG + chr7_4:62519637-62519656 Msa1169470:intron 45.0%
GGCGGCTTCTATTATCTACA+CGG + chr7_4:62519658-62519677 Msa1169470:intron 45.0%
GCGGCTTCTATTATCTACAC+GGG + chr7_4:62519659-62519678 Msa1169470:intron 45.0%
CGGCTTCTATTATCTACACG+GGG + chr7_4:62519660-62519679 Msa1169470:intron 45.0%
GGCTTCTATTATCTACACGG+GGG + chr7_4:62519661-62519680 Msa1169470:intron 45.0%
TTGGATGGTCGCGATATTGA+TGG + chr7_4:62519791-62519810 Msa1169470:CDS 45.0%
GTGGAATTTGCAAAAGGGGT+AGG + chr7_4:62519827-62519846 Msa1169470:intron 45.0%
TAAATCATTCAGGTCCCTCG+GGG + chr7_4:62520687-62520706 Msa1169470:intron 45.0%
TCTAGGGAATATTTGGGTCG+AGG + chr7_4:62520729-62520748 Msa1169470:CDS 45.0%
AAGAACAAGTGTTACCGCTG+TGG + chr7_4:62520831-62520850 Msa1169470:CDS 45.0%
AGAACAAGTGTTACCGCTGT+GGG + chr7_4:62520832-62520851 Msa1169470:CDS 45.0%
CGTGATCTATCTGAAGGAAC+TGG - chr7_4:62521318-62521337 None:intergenic 45.0%
!! TACTTCCTTGACTTGGAAGG+CGG - chr7_4:62521348-62521367 None:intergenic 45.0%
CACTGTAATCAGACCCATCT+TGG - chr7_4:62521437-62521456 None:intergenic 45.0%
GATGGGTCTGATTACAGTGA+TGG + chr7_4:62521438-62521457 Msa1169470:CDS 45.0%
GCTATCTTCATTGTCCCTTG+AGG - chr7_4:62521487-62521506 None:intergenic 45.0%
GGACAATGAAGATAGCCCTA+AGG + chr7_4:62521491-62521510 Msa1169470:CDS 45.0%
GAAGATAGCCCTAAGGCTAA+TGG + chr7_4:62521498-62521517 Msa1169470:CDS 45.0%
TTGTCATCATCCTCCTCTAC+GGG - chr7_4:62521576-62521595 None:intergenic 45.0%
GTTGTCATCATCCTCCTCTA+CGG - chr7_4:62521577-62521596 None:intergenic 45.0%
! GTTTTCGGCAATCTCCTCCA+AGG + chr7_4:62518022-62518041 Msa1169470:five_prime_UTR 50.0%
TGGCAATACTCGCCTCTATG+TGG + chr7_4:62518459-62518478 Msa1169470:CDS 50.0%
GGCAATACTCGCCTCTATGT+GGG + chr7_4:62518460-62518479 Msa1169470:CDS 50.0%
GGGTCTTCAGCAGATATGGA+AGG + chr7_4:62518521-62518540 Msa1169470:CDS 50.0%
! TGGGTTTTCACTAAACCCGG+AGG + chr7_4:62519298-62519317 Msa1169470:intron 50.0%
GCCAAAGTCAACACTCAGGT+AGG - chr7_4:62519376-62519395 None:intergenic 50.0%
TATCCACATCTCGAACGCTG+CGG - chr7_4:62519541-62519560 None:intergenic 50.0%
TTCATTGCTCTGCCCAAAGG+CGG + chr7_4:62519640-62519659 Msa1169470:intron 50.0%
CACGGGGGAGTTCAATTATG+CGG + chr7_4:62519676-62519695 Msa1169470:intron 50.0%
CTTGCATCATCAGCATCTCG+AGG - chr7_4:62519764-62519783 None:intergenic 50.0%
CCTAGAATCCCGAGAATCAC+GGG - chr7_4:62520715-62520734 None:intergenic 50.0%
CCCTAGAATCCCGAGAATCA+CGG - chr7_4:62520716-62520735 None:intergenic 50.0%
CCGTGATTCTCGGGATTCTA+GGG + chr7_4:62520713-62520732 Msa1169470:CDS 50.0%
TTAAAGCAGCGTCCAGATCC+AGG - chr7_4:62520762-62520781 None:intergenic 50.0%
! TCTGGACGCTGCTTTAACTG+TGG + chr7_4:62520765-62520784 Msa1169470:CDS 50.0%
GAGATTGCAAAGCTGGGGAT+TGG + chr7_4:62520808-62520827 Msa1169470:CDS 50.0%
GAACAAGTGTTACCGCTGTG+GGG + chr7_4:62520833-62520852 Msa1169470:CDS 50.0%
ATTGAGGTAGGCCATGGTGT+TGG + chr7_4:62520899-62520918 Msa1169470:intron 50.0%
TTGAGGTAGGCCATGGTGTT+GGG + chr7_4:62520900-62520919 Msa1169470:intron 50.0%
! CGAAGTGTTTCACGTTCTCC+AGG + chr7_4:62521048-62521067 Msa1169470:CDS 50.0%
GGACTCCGTGATCTATCTGA+AGG - chr7_4:62521324-62521343 None:intergenic 50.0%
!! CTCTTTTGTGGACTGCCTTC+AGG - chr7_4:62521381-62521400 None:intergenic 50.0%
! CACAAAAGAGCGCATCTCCT+GGG + chr7_4:62521391-62521410 Msa1169470:CDS 50.0%
CGCATCTCCTGGGAATGATA+GGG + chr7_4:62521401-62521420 Msa1169470:CDS 50.0%
ATCTCCTGGGAATGATAGGG+TGG + chr7_4:62521404-62521423 Msa1169470:CDS 50.0%
TGTCATCATCCTCCTCTACG+GGG - chr7_4:62521575-62521594 None:intergenic 50.0%
ACGAACTCGTTCCCGTGATC+TGG + chr7_4:62518495-62518514 Msa1169470:CDS 55.0%
TGAAGACCCGCTCCAGATCA+CGG - chr7_4:62518510-62518529 None:intergenic 55.0%
GAGCGGGTCTTCAGCAGATA+TGG + chr7_4:62518517-62518536 Msa1169470:CDS 55.0%
CCAAACAGGCCCACAGACAA+TGG - chr7_4:62518849-62518868 None:intergenic 55.0%
CCATTGTCTGTGGGCCTGTT+TGG + chr7_4:62518846-62518865 Msa1169470:intron 55.0%
CGGTTCCCACGCATAACATG+AGG - chr7_4:62519230-62519249 None:intergenic 55.0%
TCACTAAACCCGGAGGTCTG+TGG + chr7_4:62519305-62519324 Msa1169470:intron 55.0%
TAAACCCGGAGGTCTGTGGT+GGG + chr7_4:62519309-62519328 Msa1169470:intron 55.0%
! GGGTGGCCTTGGTGTAATCT+TGG + chr7_4:62519333-62519352 Msa1169470:intron 55.0%
CATCTCGAACGCTGCGGAAA+TGG - chr7_4:62519535-62519554 None:intergenic 55.0%
TTTCCGCAGCGTTCGAGATG+TGG + chr7_4:62519535-62519554 Msa1169470:intron 55.0%
CCCGTGATTCTCGGGATTCT+AGG + chr7_4:62520712-62520731 Msa1169470:CDS 55.0%
!! ACTGTGGCATTGATGGCCAC+TGG + chr7_4:62520781-62520800 Msa1169470:CDS 55.0%
!! CTGTGGCATTGATGGCCACT+GGG + chr7_4:62520782-62520801 Msa1169470:CDS 55.0%
CTTTGCAATCTCGAGCCCAG+TGG - chr7_4:62520800-62520819 None:intergenic 55.0%
TGGGCTCGAGATTGCAAAGC+TGG + chr7_4:62520801-62520820 Msa1169470:CDS 55.0%
GGGCTCGAGATTGCAAAGCT+GGG + chr7_4:62520802-62520821 Msa1169470:CDS 55.0%
GGCTCGAGATTGCAAAGCTG+GGG + chr7_4:62520803-62520822 Msa1169470:CDS 55.0%
TATGACCTCTCTCCCCACAG+CGG - chr7_4:62520848-62520867 None:intergenic 55.0%
! TGAGGTAGGCCATGGTGTTG+GGG + chr7_4:62520901-62520920 Msa1169470:intron 55.0%
AGCTTGGAACCCCAACACCA+TGG - chr7_4:62520913-62520932 None:intergenic 55.0%
! ATGGTGTTGGGGTTCCAAGC+TGG + chr7_4:62520912-62520931 Msa1169470:intron 55.0%
GTGTTTCACGTTCTCCAGGC+AGG + chr7_4:62521052-62521071 Msa1169470:CDS 55.0%
TCTCCTAGGAGAACGAGACC+TGG - chr7_4:62521109-62521128 None:intergenic 55.0%
AGGTCTCGTTCTCCTAGGAG+AGG + chr7_4:62521108-62521127 Msa1169470:CDS 55.0%
ACTGACCTATAGCTGCGAGC+CGG - chr7_4:62521159-62521178 None:intergenic 55.0%
GACAGGAGATCTTGATCGGC+TGG - chr7_4:62521280-62521299 None:intergenic 55.0%
GGGCTTCGATCTCTTCTGAC+AGG - chr7_4:62521297-62521316 None:intergenic 55.0%
!! TTCCTTGACTTGGAAGGCGG+AGG - chr7_4:62521345-62521364 None:intergenic 55.0%
! CCAGGAGATGCGCTCTTTTG+TGG - chr7_4:62521393-62521412 None:intergenic 55.0%
! CCACAAAAGAGCGCATCTCC+TGG + chr7_4:62521390-62521409 Msa1169470:CDS 55.0%
GCGCATCTCCTGGGAATGAT+AGG + chr7_4:62521400-62521419 Msa1169470:CDS 55.0%
GCAACCACCCTATCATTCCC+AGG - chr7_4:62521411-62521430 None:intergenic 55.0%
AGGGTGGTTGCAACCCAAGA+TGG + chr7_4:62521420-62521439 Msa1169470:CDS 55.0%
GGGTGGTTGCAACCCAAGAT+GGG + chr7_4:62521421-62521440 Msa1169470:CDS 55.0%
TGAAGAGCAGAAGCCCCTCA+AGG + chr7_4:62521469-62521488 Msa1169470:CDS 55.0%
GAAGAGCAGAAGCCCCTCAA+GGG + chr7_4:62521470-62521489 Msa1169470:CDS 55.0%
!! TGCTGCGCCCATTAGCCTTA+GGG - chr7_4:62521509-62521528 None:intergenic 55.0%
CTCGTTCCCGTGATCTGGAG+CGG + chr7_4:62518500-62518519 Msa1169470:CDS 60.0%
! TCGTTCCCGTGATCTGGAGC+GGG + chr7_4:62518501-62518520 Msa1169470:CDS 60.0%
GAAGACCCGCTCCAGATCAC+GGG - chr7_4:62518509-62518528 None:intergenic 60.0%
!! CCTGGGGTGCCATTGTCTGT+GGG + chr7_4:62518837-62518856 Msa1169470:intron 60.0%
CTAAACCCGGAGGTCTGTGG+TGG + chr7_4:62519308-62519327 Msa1169470:intron 60.0%
GAGAATCACGGGAACCCCGA+GGG - chr7_4:62520704-62520723 None:intergenic 60.0%
CTCGGGGTTCCCGTGATTCT+CGG + chr7_4:62520703-62520722 Msa1169470:CDS 60.0%
TCGGGGTTCCCGTGATTCTC+GGG + chr7_4:62520704-62520723 Msa1169470:CDS 60.0%
AAGCAGCGTCCAGATCCAGG+AGG - chr7_4:62520759-62520778 None:intergenic 60.0%
TGTTACCGCTGTGGGGAGAG+AGG + chr7_4:62520840-62520859 Msa1169470:CDS 60.0%
CTAGGAGAACGAGACCTGGC+TGG - chr7_4:62521105-62521124 None:intergenic 60.0%
CAGCCAGGTCTCGTTCTCCT+AGG + chr7_4:62521103-62521122 Msa1169470:CDS 60.0%
TCACGGCTTCTGCCTCTCCT+AGG - chr7_4:62521123-62521142 None:intergenic 60.0%
CCGGGCTGTAGCTTCTGTCA+CGG - chr7_4:62521140-62521159 None:intergenic 60.0%
CCGTGACAGAAGCTACAGCC+CGG + chr7_4:62521137-62521156 Msa1169470:CDS 60.0%
CTGACCTATAGCTGCGAGCC+GGG - chr7_4:62521158-62521177 None:intergenic 60.0%
GTCCTCCGCCTTCCAAGTCA+AGG + chr7_4:62521340-62521359 Msa1169470:CDS 60.0%
!! CTGCTGCGCCCATTAGCCTT+AGG - chr7_4:62521510-62521529 None:intergenic 60.0%
TATCCTCATCCCTGGGGCTG+CGG - chr7_4:62521548-62521567 None:intergenic 60.0%
GGCTCCTATCCTCATCCCTG+GGG - chr7_4:62521554-62521573 None:intergenic 60.0%
GGGCTCCTATCCTCATCCCT+GGG - chr7_4:62521555-62521574 None:intergenic 60.0%
TGAGGATAGGAGCCCCGTAG+AGG + chr7_4:62521560-62521579 Msa1169470:CDS 60.0%
AATGAGCTCAGGACTCGGCC+AGG + chr7_4:62521639-62521658 Msa1169470:three_prime_UTR 60.0%
!! GCCTGGGGTGCCATTGTCTG+TGG + chr7_4:62518836-62518855 Msa1169470:intron 65.0%
CCCACAGACAATGGCACCCC+AGG - chr7_4:62518840-62518859 None:intergenic 65.0%
GCGTGGGAACCGTATCCCAC+AGG + chr7_4:62519238-62519257 Msa1169470:intron 65.0%
ACCCTCCCACCACAGACCTC+CGG - chr7_4:62519317-62519336 None:intergenic 65.0%
CGAGAATCACGGGAACCCCG+AGG - chr7_4:62520705-62520724 None:intergenic 65.0%
TTGGGTCGAGGTCCACCTCC+TGG + chr7_4:62520741-62520760 Msa1169470:CDS 65.0%
CGAGGTCCACCTCCTGGATC+TGG + chr7_4:62520747-62520766 Msa1169470:CDS 65.0%
CAGCGTCCAGATCCAGGAGG+TGG - chr7_4:62520756-62520775 None:intergenic 65.0%
GCTGGAGAACGTGACCTGCC+TGG - chr7_4:62521069-62521088 None:intergenic 65.0%
GCAGGTCACGTTCTCCAGCC+AGG + chr7_4:62521070-62521089 Msa1169470:CDS 65.0%
GCTGGAGAACGAGACCTGGC+TGG - chr7_4:62521087-62521106 None:intergenic 65.0%
CCTGGCTGGAGAACGAGACC+TGG - chr7_4:62521091-62521110 None:intergenic 65.0%
CCAGGTCTCGTTCTCCAGCC+AGG + chr7_4:62521088-62521107 Msa1169470:CDS 65.0%
! ACAGCCCGGCTCGCAGCTAT+AGG + chr7_4:62521151-62521170 Msa1169470:CDS 65.0%
GCAGCCCCAGGGATGAGGAT+AGG + chr7_4:62521547-62521566 Msa1169470:CDS 65.0%
GGGGCTCCTATCCTCATCCC+TGG - chr7_4:62521556-62521575 None:intergenic 65.0%
GGATAGGAGCCCCGTAGAGG+AGG + chr7_4:62521563-62521582 Msa1169470:CDS 65.0%
! ACCCGGAGGTCTGTGGTGGG+AGG + chr7_4:62519312-62519331 Msa1169470:intron 70.0%
CCCTCCCACCACAGACCTCC+GGG - chr7_4:62519316-62519335 None:intergenic 70.0%
! CCCGGAGGTCTGTGGTGGGA+GGG + chr7_4:62519313-62519332 Msa1169470:intron 70.0%
! GGAGGTCTGTGGTGGGAGGG+TGG + chr7_4:62519316-62519335 Msa1169470:intron 70.0%
! CTGTGGTGGGAGGGTGGCCT+TGG + chr7_4:62519322-62519341 Msa1169470:intron 70.0%
TGGGGCTGCGGCTGCGGCTT+CGG - chr7_4:62521536-62521555 None:intergenic 75.0%
AAGCCGCAGCCGCAGCCCCA+GGG + chr7_4:62521536-62521555 Msa1169470:CDS 75.0%
CATCCCTGGGGCTGCGGCTG+CGG - chr7_4:62521542-62521561 None:intergenic 75.0%
CAGCCGCAGCCCCAGGGATG+AGG + chr7_4:62521542-62521561 Msa1169470:CDS 75.0%
! GAAGCCGCAGCCGCAGCCCC+AGG + chr7_4:62521535-62521554 Msa1169470:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62517957 62521953 62517957 ID=Msa1169470;Name=Msa1169470
chr7_4 mRNA 62517957 62521953 62517957 ID=Msa1169470-mRNA-1;Parent=Msa1169470;Name=Msa1169470-mRNA-1;_AED=0.23;_eAED=0.23;_QI=103|1|1|1|0.83|0.71|7|333|307
chr7_4 exon 62517957 62518043 62517957 ID=Msa1169470-mRNA-1:exon:19837;Parent=Msa1169470-mRNA-1
chr7_4 exon 62518420 62518542 62518420 ID=Msa1169470-mRNA-1:exon:19838;Parent=Msa1169470-mRNA-1
chr7_4 exon 62519544 62519583 62519544 ID=Msa1169470-mRNA-1:exon:19839;Parent=Msa1169470-mRNA-1
chr7_4 exon 62519749 62519844 62519749 ID=Msa1169470-mRNA-1:exon:19840;Parent=Msa1169470-mRNA-1
chr7_4 exon 62520699 62520904 62520699 ID=Msa1169470-mRNA-1:exon:19841;Parent=Msa1169470-mRNA-1
chr7_4 exon 62521038 62521172 62521038 ID=Msa1169470-mRNA-1:exon:19842;Parent=Msa1169470-mRNA-1
chr7_4 exon 62521281 62521953 62521281 ID=Msa1169470-mRNA-1:exon:19843;Parent=Msa1169470-mRNA-1
chr7_4 five_prime_UTR 62517957 62518043 62517957 ID=Msa1169470-mRNA-1:five_prime_utr;Parent=Msa1169470-mRNA-1
chr7_4 five_prime_UTR 62518420 62518435 62518420 ID=Msa1169470-mRNA-1:five_prime_utr;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62518436 62518542 62518436 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62519544 62519583 62519544 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62519749 62519844 62519749 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62520699 62520904 62520699 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62521038 62521172 62521038 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 CDS 62521281 62521620 62521281 ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1
chr7_4 three_prime_UTR 62521621 62521953 62521621 ID=Msa1169470-mRNA-1:three_prime_utr;Parent=Msa1169470-mRNA-1
Gene Sequence

>Msa1169470

ATGCCTCGCTACGATGATAAGTATGGCAATACTCGCCTCTATGTGGGTCGTTTGTCTTCACGAACTCGTTCCCGTGATCTGGAGCGGGTCTTCAGCAGATATGGAAGCGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGAGATCCTCGAGATGCTGATGATGCAAGATACAATTTGGATGGTCGCGATATTGATGGAAGTCGTCTTATTGTGGAATTTGCAAAAGGGGTCCCTCGGGGTTCCCGTGATTCTCGGGATTCTAGGGAATATTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATCGAAAAGAACTGCAAGAACAGTCCAAAAAAATTGAGCAGACATGCACGAAGTGTTTCACGTTCTCCAGGCAGGTCACGTTCTCCAGCCAGGTCTCGTTCTCCAGCCAGGTCTCGTTCTCCTAGGAGAGGCAGAAGCCGTGACAGAAGCTACAGCCCGGCTCGCAGCTATAGCCGATCAAGATCTCCTGTCAGAAGAGATCGAAGCCCAGTTCCTTCAGATAGATCACGGAGTCCTCCGCCTTCCAAGTCAAGGAAGTATAGTCGATCTCCTGAAGGCAGTCCACAAAAGAGCGCATCTCCTGGGAATGATAGGGTGGTTGCAACCCAAGATGGGTCTGATTACAGTGATGGTGCTAGAGTGAAGAGCAGAAGCCCCTCAAGGGACAATGAAGATAGCCCTAAGGCTAATGGGCGCAGCAGAAGCCGAAGCCGCAGCCGCAGCCCCAGGGATGAGGATAGGAGCCCCGTAGAGGAGGATGATGACAACAATCGTCGCTCTCCATCACCTTAA

Protein sequence

>Msa1169470

MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPGRSRSPARSRSPARSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPVPSDRSRSPPPSKSRKYSRSPEGSPQKSASPGNDRVVATQDGSDYSDGARVKSRSPSRDNEDSPKANGRSRSRSRSRSPRDEDRSPVEEDDDNNRRSPSP*