Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1169470 | XP_024625911.1 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1169470 | sp|Q9FYB7|RSZ32_ARATH | 64.706 | 255 | 66 | 5 | 1 | 238 | 1 | 248 | 3.49e-85 | 260 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1169470 | A0A396HBT0 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003030 | Msa1169470 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
Msa0691760 | Msa1169470 | 0.807989 | 3.859398e-50 | -8.615850e-47 |
Msa0146910 | Msa1169470 | 0.808107 | 3.644063e-50 | -8.615850e-47 |
Msa0376850 | Msa1169470 | 0.843205 | 1.616669e-58 | -8.615850e-47 |
Msa1078480 | Msa1169470 | 0.919352 | 5.012534e-87 | -8.615850e-47 |
Msa1078640 | Msa1169470 | 0.929026 | 1.253124e-92 | -8.615850e-47 |
Msa0516830 | Msa1169470 | 0.841941 | 3.501469e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1169470 | MtrunA17_Chr7g0263341 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Msa1169470 | MtrunA17_Chr1g0192221 | 51.190 | 84 | 35 | 2 | 13 | 91 | 40 | 122 | 9.18e-16 | 76.3 |
Msa1169470 | MtrunA17_Chr7g0269331 | 46.429 | 84 | 39 | 2 | 13 | 91 | 9 | 91 | 1.31e-12 | 67.0 |
Msa1169470 | MtrunA17_Chr8g0357591 | 33.621 | 116 | 61 | 4 | 13 | 120 | 245 | 352 | 2.05e-11 | 64.7 |
Msa1169470 | MtrunA17_Chr7g0272311 | 44.595 | 74 | 36 | 1 | 13 | 81 | 9 | 82 | 8.13e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1169470 | AT3G53500.2 | 64.706 | 255 | 66 | 5 | 1 | 238 | 1 | 248 | 3.55e-86 | 260 |
Msa1169470 | AT2G37340.1 | 81.457 | 151 | 22 | 1 | 1 | 151 | 1 | 145 | 6.10e-86 | 260 |
Msa1169470 | AT2G37340.5 | 78.182 | 110 | 18 | 1 | 42 | 151 | 1 | 104 | 1.38e-57 | 186 |
Msa1169470 | AT2G37340.3 | 78.182 | 110 | 18 | 1 | 42 | 151 | 1 | 104 | 1.38e-57 | 186 |
Msa1169470 | AT3G53500.1 | 75.000 | 120 | 23 | 2 | 42 | 160 | 1 | 114 | 1.88e-57 | 185 |
Msa1169470 | AT3G53500.3 | 75.000 | 120 | 23 | 2 | 42 | 160 | 1 | 114 | 1.88e-57 | 185 |
Msa1169470 | AT2G37340.2 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1169470 | AT2G37340.6 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1169470 | AT2G37340.4 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1169470 | AT4G02430.1 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 1.05e-15 | 74.3 |
Msa1169470 | AT1G09140.3 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 4.03e-15 | 73.9 |
Msa1169470 | AT1G09140.1 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 4.59e-15 | 74.3 |
Msa1169470 | AT1G09140.2 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 5.42e-15 | 73.9 |
Msa1169470 | AT4G02430.3 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 7.25e-15 | 73.6 |
Msa1169470 | AT4G02430.4 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 8.07e-15 | 73.9 |
Msa1169470 | AT1G02840.1 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 4.34e-14 | 72.0 |
Msa1169470 | AT1G02840.4 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1169470 | AT1G02840.5 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1169470 | AT1G02840.3 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1169470 | AT1G02840.2 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 9.92e-14 | 70.5 |
Msa1169470 | AT1G53720.1 | 31.933 | 119 | 68 | 2 | 13 | 123 | 245 | 358 | 3.95e-12 | 67.0 |
Msa1169470 | AT3G61860.1 | 32.479 | 234 | 124 | 8 | 13 | 216 | 4 | 233 | 9.85e-12 | 64.7 |
Find 130 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGGGATTCTAGGGAATATT+TGG | 0.121434 | 7_4:+62520722 | Msa1169470:CDS |
CTGCTGCGCCCATTAGCCTT+AGG | 0.207621 | 7_4:-62521507 | None:intergenic |
CCCGTGATTCTCGGGATTCT+AGG | 0.293289 | 7_4:+62520712 | Msa1169470:CDS |
TGGGGCTGCGGCTGCGGCTT+CGG | 0.294948 | 7_4:-62521533 | None:intergenic |
TGGCTAATGTAATAAGAAAA+AGG | 0.315290 | 7_4:-62521892 | None:intergenic |
TGCTTTAACTGTGGCATTGA+TGG | 0.325784 | 7_4:+62520774 | Msa1169470:CDS |
ACGAACTCGTTCCCGTGATC+TGG | 0.327875 | 7_4:+62518495 | Msa1169470:CDS |
CTCGGGGTTCCCGTGATTCT+CGG | 0.336974 | 7_4:+62520703 | Msa1169470:CDS |
GCGCATCTCCTGGGAATGAT+AGG | 0.340026 | 7_4:+62521400 | Msa1169470:CDS |
CATCCCTGGGGCTGCGGCTG+CGG | 0.349340 | 7_4:-62521539 | None:intergenic |
CTATCTTCATTGTCCCTTGA+GGG | 0.366692 | 7_4:-62521483 | None:intergenic |
CGGGATTCTAGGGAATATTT+GGG | 0.369880 | 7_4:+62520723 | Msa1169470:CDS |
GAAGCCGCAGCCGCAGCCCC+AGG | 0.370362 | 7_4:+62521535 | Msa1169470:CDS |
CACTGTAATCAGACCCATCT+TGG | 0.371288 | 7_4:-62521434 | None:intergenic |
TGGGCTCGAGATTGCAAAGC+TGG | 0.378836 | 7_4:+62520801 | Msa1169470:CDS |
GGGGCTCCTATCCTCATCCC+TGG | 0.383826 | 7_4:-62521553 | None:intergenic |
CCTCGCTACGATGATAAGTA+TGG | 0.384992 | 7_4:+62518439 | Msa1169470:CDS |
ACAGCCCGGCTCGCAGCTAT+AGG | 0.385941 | 7_4:+62521151 | Msa1169470:CDS |
CGTGATCTATCTGAAGGAAC+TGG | 0.392264 | 7_4:-62521315 | None:intergenic |
GAGTCCTGAGCTCATTTATA+AGG | 0.393196 | 7_4:-62521632 | None:intergenic |
CGATCCACTTTCAAAGGGTT+AGG | 0.394976 | 7_4:+62518000 | Msa1169470:five_prime_UTR |
GAGCGGGTCTTCAGCAGATA+TGG | 0.401178 | 7_4:+62518517 | Msa1169470:CDS |
TTGGATGGTCGCGATATTGA+TGG | 0.402561 | 7_4:+62519791 | Msa1169470:CDS |
TGAATGCTTAATGATGCTTA+TGG | 0.403520 | 7_4:+62521708 | Msa1169470:three_prime_UTR |
TGATGATGCAAGATACAATT+TGG | 0.409460 | 7_4:+62519772 | Msa1169470:CDS |
GAAGATAGCCCTAAGGCTAA+TGG | 0.412338 | 7_4:+62521498 | Msa1169470:CDS |
GGGCTCCTATCCTCATCCCT+GGG | 0.414164 | 7_4:-62521552 | None:intergenic |
ACTGTGGCATTGATGGCCAC+TGG | 0.418962 | 7_4:+62520781 | Msa1169470:CDS |
CTTATTGTGGAATTTGCAAA+AGG | 0.421224 | 7_4:+62519821 | Msa1169470:CDS |
CAGCCGCAGCCCCAGGGATG+AGG | 0.434071 | 7_4:+62521542 | Msa1169470:CDS |
GCTGGAGAACGTGACCTGCC+TGG | 0.453809 | 7_4:-62521066 | None:intergenic |
TGCTGCGCCCATTAGCCTTA+GGG | 0.454836 | 7_4:-62521506 | None:intergenic |
TTGTCATCATCCTCCTCTAC+GGG | 0.456642 | 7_4:-62521573 | None:intergenic |
TTAAAGCAGCGTCCAGATCC+AGG | 0.456838 | 7_4:-62520759 | None:intergenic |
TCGGGGTTCCCGTGATTCTC+GGG | 0.459836 | 7_4:+62520704 | Msa1169470:CDS |
GAGATTGCAAAGCTGGGGAT+TGG | 0.463497 | 7_4:+62520808 | Msa1169470:CDS |
AAGATAGCCCTAAGGCTAAT+GGG | 0.465291 | 7_4:+62521499 | Msa1169470:CDS |
TTGGGTCGAGGTCCACCTCC+TGG | 0.467496 | 7_4:+62520741 | Msa1169470:CDS |
CCACAAAAGAGCGCATCTCC+TGG | 0.473439 | 7_4:+62521390 | Msa1169470:CDS |
TTTAAATCATTCAGGTCCCT+CGG | 0.477497 | 7_4:+62520685 | Msa1169470:intron |
CTGTGGCATTGATGGCCACT+GGG | 0.479381 | 7_4:+62520782 | Msa1169470:CDS |
CCGTGATTCTCGGGATTCTA+GGG | 0.479447 | 7_4:+62520713 | Msa1169470:CDS |
GCTGGAGAACGAGACCTGGC+TGG | 0.480780 | 7_4:-62521084 | None:intergenic |
CCAGGTCTCGTTCTCCAGCC+AGG | 0.481833 | 7_4:+62521088 | Msa1169470:CDS |
TTAAATCATTCAGGTCCCTC+GGG | 0.489749 | 7_4:+62520686 | Msa1169470:intron |
AAAACCTAACCCTTTGAAAG+TGG | 0.491426 | 7_4:-62518004 | None:intergenic |
GTTGTCATCATCCTCCTCTA+CGG | 0.498569 | 7_4:-62521574 | None:intergenic |
AGAAGCCGATCCACTTTCAA+AGG | 0.501384 | 7_4:+62517994 | Msa1169470:five_prime_UTR |
TATCCTCATCCCTGGGGCTG+CGG | 0.503485 | 7_4:-62521545 | None:intergenic |
TTTCCGCAGCGTTCGAGATG+TGG | 0.503829 | 7_4:+62519535 | Msa1169470:intron |
CTAGGAGAACGAGACCTGGC+TGG | 0.505412 | 7_4:-62521102 | None:intergenic |
GGGCTCGAGATTGCAAAGCT+GGG | 0.505931 | 7_4:+62520802 | Msa1169470:CDS |
CAGCCAGGTCTCGTTCTCCT+AGG | 0.514139 | 7_4:+62521103 | Msa1169470:CDS |
TTATAAATGAGCTCAGGACT+CGG | 0.515566 | 7_4:+62521634 | Msa1169470:three_prime_UTR |
AACAAAACATATGAATATCC+TGG | 0.516284 | 7_4:-62521657 | None:intergenic |
GTGTTTCACGTTCTCCAGGC+AGG | 0.517810 | 7_4:+62521052 | Msa1169470:CDS |
CCTGGCTGGAGAACGAGACC+TGG | 0.518309 | 7_4:-62521088 | None:intergenic |
GCAGGTCACGTTCTCCAGCC+AGG | 0.518573 | 7_4:+62521070 | Msa1169470:CDS |
AGGGTGGTTGCAACCCAAGA+TGG | 0.519504 | 7_4:+62521420 | Msa1169470:CDS |
TCACGGCTTCTGCCTCTCCT+AGG | 0.520626 | 7_4:-62521120 | None:intergenic |
ACTGTAATCAGACCCATCTT+GGG | 0.521356 | 7_4:-62521433 | None:intergenic |
AATGAGCTCAGGACTCGGCC+AGG | 0.524548 | 7_4:+62521639 | Msa1169470:three_prime_UTR |
TGGCAATACTCGCCTCTATG+TGG | 0.526514 | 7_4:+62518459 | Msa1169470:CDS |
TGATGGAAGTCGTCTTATTG+TGG | 0.526867 | 7_4:+62519808 | Msa1169470:CDS |
TCGACTATACTTCCTTGACT+TGG | 0.532326 | 7_4:-62521352 | None:intergenic |
CACAAAAGAGCGCATCTCCT+GGG | 0.532883 | 7_4:+62521391 | Msa1169470:CDS |
GCTATCTTCATTGTCCCTTG+AGG | 0.536005 | 7_4:-62521484 | None:intergenic |
AGAACAAGTGTTACCGCTGT+GGG | 0.537145 | 7_4:+62520832 | Msa1169470:CDS |
CTATACTTCCTTGACTTGGA+AGG | 0.537488 | 7_4:-62521348 | None:intergenic |
CCTAGAATCCCGAGAATCAC+GGG | 0.537583 | 7_4:-62520712 | None:intergenic |
CTCGTTCCCGTGATCTGGAG+CGG | 0.539186 | 7_4:+62518500 | Msa1169470:CDS |
TATCTTCATTGTCCCTTGAG+GGG | 0.543060 | 7_4:-62521482 | None:intergenic |
TTATTGTGGAATTTGCAAAA+GGG | 0.544758 | 7_4:+62519822 | Msa1169470:CDS |
GCAGCCCCAGGGATGAGGAT+AGG | 0.545596 | 7_4:+62521547 | Msa1169470:CDS |
GGGCTTCGATCTCTTCTGAC+AGG | 0.550887 | 7_4:-62521294 | None:intergenic |
TGAAGACCCGCTCCAGATCA+CGG | 0.552161 | 7_4:-62518507 | None:intergenic |
GGCAATACTCGCCTCTATGT+GGG | 0.553412 | 7_4:+62518460 | Msa1169470:CDS |
TTCTGACAGGAGATCTTGAT+CGG | 0.556640 | 7_4:-62521281 | None:intergenic |
CAGCGTCCAGATCCAGGAGG+TGG | 0.557824 | 7_4:-62520753 | None:intergenic |
GGGTGGTTGCAACCCAAGAT+GGG | 0.557970 | 7_4:+62521421 | Msa1169470:CDS |
TCTAGGGAATATTTGGGTCG+AGG | 0.558291 | 7_4:+62520729 | Msa1169470:CDS |
TTCCTTGACTTGGAAGGCGG+AGG | 0.565604 | 7_4:-62521342 | None:intergenic |
CGCATCTCCTGGGAATGATA+GGG | 0.566420 | 7_4:+62521401 | Msa1169470:CDS |
GGATAGGAGCCCCGTAGAGG+AGG | 0.567283 | 7_4:+62521563 | Msa1169470:CDS |
ACTGACCTATAGCTGCGAGC+CGG | 0.569164 | 7_4:-62521156 | None:intergenic |
CCCTAGAATCCCGAGAATCA+CGG | 0.570993 | 7_4:-62520713 | None:intergenic |
AAGCCGCAGCCGCAGCCCCA+GGG | 0.571588 | 7_4:+62521536 | Msa1169470:CDS |
GAAGACCCGCTCCAGATCAC+GGG | 0.572455 | 7_4:-62518506 | None:intergenic |
CTAACCCTTTGAAAGTGGAT+CGG | 0.574194 | 7_4:-62517999 | None:intergenic |
TATTGTGGAATTTGCAAAAG+GGG | 0.575734 | 7_4:+62519823 | Msa1169470:CDS |
GAAGCCGATCCACTTTCAAA+GGG | 0.576229 | 7_4:+62517995 | Msa1169470:five_prime_UTR |
AATAAGGATTGGTACCTTGG+AGG | 0.577956 | 7_4:-62518036 | None:intergenic |
TGTTACCGCTGTGGGGAGAG+AGG | 0.579057 | 7_4:+62520840 | Msa1169470:CDS |
GAAGAGCAGAAGCCCCTCAA+GGG | 0.580119 | 7_4:+62521470 | Msa1169470:CDS |
TGAAGAGCAGAAGCCCCTCA+AGG | 0.584992 | 7_4:+62521469 | Msa1169470:CDS |
GTCCTCCGCCTTCCAAGTCA+AGG | 0.589515 | 7_4:+62521340 | Msa1169470:CDS |
GTGATCTATCTGAAGGAACT+GGG | 0.591868 | 7_4:-62521314 | None:intergenic |
TCTCCTAGGAGAACGAGACC+TGG | 0.593532 | 7_4:-62521106 | None:intergenic |
GCAACCACCCTATCATTCCC+AGG | 0.596323 | 7_4:-62521408 | None:intergenic |
ACAATTGTTGCAACCAACAG+AGG | 0.600917 | 7_4:-62521771 | None:intergenic |
TACTTCCTTGACTTGGAAGG+CGG | 0.601572 | 7_4:-62521345 | None:intergenic |
AAGACAAACGACCCACATAG+AGG | 0.604217 | 7_4:-62518471 | None:intergenic |
CCGTGACAGAAGCTACAGCC+CGG | 0.604984 | 7_4:+62521137 | Msa1169470:CDS |
GGCTCGAGATTGCAAAGCTG+GGG | 0.605985 | 7_4:+62520803 | Msa1169470:CDS |
GAGAATCACGGGAACCCCGA+GGG | 0.610115 | 7_4:-62520701 | None:intergenic |
CAGTTCCTTCAGATAGATCA+CGG | 0.612374 | 7_4:+62521316 | Msa1169470:CDS |
GATGCAAGATACAATTTGGA+TGG | 0.614822 | 7_4:+62519776 | Msa1169470:CDS |
TCTGGACGCTGCTTTAACTG+TGG | 0.621834 | 7_4:+62520765 | Msa1169470:CDS |
CCGGGCTGTAGCTTCTGTCA+CGG | 0.626094 | 7_4:-62521137 | None:intergenic |
GGACAATGAAGATAGCCCTA+AGG | 0.628195 | 7_4:+62521491 | Msa1169470:CDS |
GATATAAATAGTGAAACGCA+TGG | 0.631829 | 7_4:+62517969 | Msa1169470:five_prime_UTR |
AGGTCTCGTTCTCCTAGGAG+AGG | 0.635451 | 7_4:+62521108 | Msa1169470:CDS |
TAAATCATTCAGGTCCCTCG+GGG | 0.636009 | 7_4:+62520687 | Msa1169470:intron |
ATCTCCTGGGAATGATAGGG+TGG | 0.637023 | 7_4:+62521404 | Msa1169470:CDS |
GATGGGTCTGATTACAGTGA+TGG | 0.645059 | 7_4:+62521438 | Msa1169470:CDS |
AAGAACAAGTGTTACCGCTG+TGG | 0.645882 | 7_4:+62520831 | Msa1169470:CDS |
TGAGGATAGGAGCCCCGTAG+AGG | 0.657043 | 7_4:+62521560 | Msa1169470:CDS |
AGGGTAAGAACTTACAACAA+AGG | 0.661425 | 7_4:-62519576 | None:intergenic |
GGGTCTTCAGCAGATATGGA+AGG | 0.663027 | 7_4:+62518521 | Msa1169470:CDS |
GGCTCCTATCCTCATCCCTG+GGG | 0.667502 | 7_4:-62521551 | None:intergenic |
AAGTATAGTCGATCTCCTGA+AGG | 0.670998 | 7_4:+62521363 | Msa1169470:CDS |
CTTGCATCATCAGCATCTCG+AGG | 0.683904 | 7_4:-62519761 | None:intergenic |
CGAGAATCACGGGAACCCCG+AGG | 0.694715 | 7_4:-62520702 | None:intergenic |
TGTCATCATCCTCCTCTACG+GGG | 0.697101 | 7_4:-62521572 | None:intergenic |
CTTTGCAATCTCGAGCCCAG+TGG | 0.704739 | 7_4:-62520797 | None:intergenic |
ATGCTTATGGTTATGAACAA+CGG | 0.706115 | 7_4:+62521721 | Msa1169470:three_prime_UTR |
GAACAAGTGTTACCGCTGTG+GGG | 0.707356 | 7_4:+62520833 | Msa1169470:CDS |
CCATACTTATCATCGTAGCG+AGG | 0.710626 | 7_4:-62518439 | None:intergenic |
TATGACCTCTCTCCCCACAG+CGG | 0.773660 | 7_4:-62520845 | None:intergenic |
AAGCAGCGTCCAGATCCAGG+AGG | 0.786991 | 7_4:-62520756 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GGAAAAATAAAAAATTAAAT+GGG | - | chr7_4:62518102-62518121 | None:intergenic | 10.0% |
!! | TGGAAAAATAAAAAATTAAA+TGG | - | chr7_4:62518103-62518122 | None:intergenic | 10.0% |
!!! | TTAATTTTTTATTTTTCCAT+CGG | + | chr7_4:62518104-62518123 | Msa1169470:intron | 10.0% |
!! | ATAAAAAATTAAATGGGAAT+AGG | - | chr7_4:62518096-62518115 | None:intergenic | 15.0% |
!! | AATAAAAAAGTAACAAAACA+GGG | - | chr7_4:62519604-62519623 | None:intergenic | 15.0% |
!! | AAATAAAAAAGTAACAAAAC+AGG | - | chr7_4:62519605-62519624 | None:intergenic | 15.0% |
!! | TTTCAAATATAAGCAAAAAT+TGG | + | chr7_4:62520059-62520078 | Msa1169470:intron | 15.0% |
!!! | TATGAATTTTGTTCAAAATT+AGG | + | chr7_4:62520138-62520157 | Msa1169470:intron | 15.0% |
!! | AACAAAAATTGTTCAAATAA+AGG | - | chr7_4:62520177-62520196 | None:intergenic | 15.0% |
!!! | TTTTTGTTTTTATTTGATTC+CGG | + | chr7_4:62520189-62520208 | Msa1169470:intron | 15.0% |
!! | AAAAGCCTAAATATATATTA+TGG | - | chr7_4:62520269-62520288 | None:intergenic | 15.0% |
!!! | TGTTCTTTTAAATTTCTATT+GGG | + | chr7_4:62520339-62520358 | Msa1169470:intron | 15.0% |
!!! | ATTTAACTTTGTAAATTTCA+AGG | + | chr7_4:62520393-62520412 | Msa1169470:intron | 15.0% |
!!! | TTTAACTTTGTAAATTTCAA+GGG | + | chr7_4:62520394-62520413 | Msa1169470:intron | 15.0% |
!! | TAGGAAAATGAAATTGAATT+GGG | - | chr7_4:62518077-62518096 | None:intergenic | 20.0% |
!! | ATAGGAAAATGAAATTGAAT+TGG | - | chr7_4:62518078-62518097 | None:intergenic | 20.0% |
!! | ATCAAATTTAAATCGAAAAC+CGG | - | chr7_4:62518222-62518241 | None:intergenic | 20.0% |
!!! | ATGCTCGTAATTTTTTTTTT+GGG | + | chr7_4:62518278-62518297 | Msa1169470:intron | 20.0% |
!!! | TTTTTTAACCAGTTTATGAA+TGG | + | chr7_4:62518752-62518771 | Msa1169470:intron | 20.0% |
!!! | ATAATTTTCCATTCATAAAC+TGG | - | chr7_4:62518763-62518782 | None:intergenic | 20.0% |
!!! | AATGTTATTGTGTGTTTTTA+TGG | + | chr7_4:62519408-62519427 | Msa1169470:intron | 20.0% |
!! | GAGACATATAACAAAAAAAA+AGG | - | chr7_4:62519880-62519899 | None:intergenic | 20.0% |
!!! | TCTTTTATAATTAGCTTTCA+AGG | + | chr7_4:62519898-62519917 | Msa1169470:intron | 20.0% |
!!! | TGCTTATATTTGAAATCAAA+AGG | - | chr7_4:62520054-62520073 | None:intergenic | 20.0% |
!! | TTGACCAAATTCATAAAATT+TGG | - | chr7_4:62520109-62520128 | None:intergenic | 20.0% |
!! | TACTGCCATAATATATATTT+AGG | + | chr7_4:62520261-62520280 | Msa1169470:intron | 20.0% |
!!! | CTGTTCTTTTAAATTTCTAT+TGG | + | chr7_4:62520338-62520357 | Msa1169470:intron | 20.0% |
!! | TTAACTTTGTAAATTTCAAG+GGG | + | chr7_4:62520395-62520414 | Msa1169470:intron | 20.0% |
!!! | TCTGTTGTCTTTTATTTTTA+TGG | + | chr7_4:62520559-62520578 | Msa1169470:intron | 20.0% |
!! | TTTACTTATAAGCTGAAAAT+TGG | + | chr7_4:62521239-62521258 | Msa1169470:intron | 20.0% |
!! | TTACTTATAAGCTGAAAATT+GGG | + | chr7_4:62521240-62521259 | Msa1169470:intron | 20.0% |
!! | ATAAGGAAAAATACTTCTTA+AGG | - | chr7_4:62521618-62521637 | None:intergenic | 20.0% |
!! | ATTAAGCATTCAAAAAAAGA+TGG | - | chr7_4:62521700-62521719 | None:intergenic | 20.0% |
!!! | TTAAATTTTTAAACCTCTGT+TGG | + | chr7_4:62521758-62521777 | Msa1169470:three_prime_UTR | 20.0% |
!!! | ATAATAGCACTATTTTTCAT+TGG | - | chr7_4:62521915-62521934 | None:intergenic | 20.0% |
!!! | AATGAAAAATAGTGCTATTA+TGG | + | chr7_4:62521914-62521933 | Msa1169470:three_prime_UTR | 20.0% |
! | AGGAAAATGAAATTGAATTG+GGG | - | chr7_4:62518076-62518095 | None:intergenic | 25.0% |
! | CAAAAAAAAAATTACGAGCA+TGG | - | chr7_4:62518279-62518298 | None:intergenic | 25.0% |
!!! | CATGCTCGTAATTTTTTTTT+TGG | + | chr7_4:62518277-62518296 | Msa1169470:intron | 25.0% |
! | TGCAATCAATAATTGAATCT+GGG | - | chr7_4:62518395-62518414 | None:intergenic | 25.0% |
! | ATGCAATCAATAATTGAATC+TGG | - | chr7_4:62518396-62518415 | None:intergenic | 25.0% |
! | CCAATTTAAACAATTGTGAA+TGG | - | chr7_4:62518582-62518601 | None:intergenic | 25.0% |
! | CCATTCACAATTGTTTAAAT+TGG | + | chr7_4:62518579-62518598 | Msa1169470:intron | 25.0% |
! | AAAAGACAAAAATTGCATAG+AGG | - | chr7_4:62518610-62518629 | None:intergenic | 25.0% |
! | TCATAAACTGGTTAAAAAAC+TGG | - | chr7_4:62518751-62518770 | None:intergenic | 25.0% |
! | AATAAGTTGTTTATCCAAAC+AGG | - | chr7_4:62518863-62518882 | None:intergenic | 25.0% |
! | AACTTAAATGATCTTGTTGA+AGG | + | chr7_4:62519271-62519290 | Msa1169470:intron | 25.0% |
!!! | ATTGTGTGTTTTTATGGAAT+TGG | + | chr7_4:62519414-62519433 | Msa1169470:intron | 25.0% |
! | TTATTGTGGAATTTGCAAAA+GGG | + | chr7_4:62519822-62519841 | Msa1169470:CDS | 25.0% |
!!! | AGGAGTTTTTTTGTTTTGTT+TGG | + | chr7_4:62519918-62519937 | Msa1169470:intron | 25.0% |
! | TATAAGCAAAAATTGGTCAA+AGG | + | chr7_4:62520066-62520085 | Msa1169470:intron | 25.0% |
! | TCAAAGGAAGTTTATGAATT+TGG | + | chr7_4:62520082-62520101 | Msa1169470:intron | 25.0% |
!! | TGGTCCAAATTTTATGAATT+TGG | + | chr7_4:62520102-62520121 | Msa1169470:intron | 25.0% |
! | TCAAATAAAGGTGATGAATT+TGG | - | chr7_4:62520165-62520184 | None:intergenic | 25.0% |
! | ATAGTATTGTCAATTTGCAA+GGG | + | chr7_4:62520214-62520233 | Msa1169470:intron | 25.0% |
! | TAACTTTGTAAATTTCAAGG+GGG | + | chr7_4:62520396-62520415 | Msa1169470:intron | 25.0% |
! | TTACTTTATGACAACATTGT+TGG | + | chr7_4:62520536-62520555 | Msa1169470:intron | 25.0% |
!!! | TCATGTTGCTATTTTTCTTT+TGG | + | chr7_4:62520660-62520679 | Msa1169470:intron | 25.0% |
!!! | CATGTTGCTATTTTTCTTTT+GGG | + | chr7_4:62520661-62520680 | Msa1169470:intron | 25.0% |
! | AAATTGAAATCATCAGTTGA+AGG | - | chr7_4:62521003-62521022 | None:intergenic | 25.0% |
! | AAAAATACTTCTTAAGGTGA+TGG | - | chr7_4:62521612-62521631 | None:intergenic | 25.0% |
! | AACAAAACATATGAATATCC+TGG | - | chr7_4:62521660-62521679 | None:intergenic | 25.0% |
! | TGGCTAATGTAATAAGAAAA+AGG | - | chr7_4:62521895-62521914 | None:intergenic | 25.0% |
GATATAAATAGTGAAACGCA+TGG | + | chr7_4:62517969-62517988 | Msa1169470:five_prime_UTR | 30.0% | |
TTGGGAATGGAATGATTAAA+GGG | - | chr7_4:62518168-62518187 | None:intergenic | 30.0% | |
ATTGGGAATGGAATGATTAA+AGG | - | chr7_4:62518169-62518188 | None:intergenic | 30.0% | |
! | ATCTTCTCTTTTTCTCTTGA+TGG | - | chr7_4:62518333-62518352 | None:intergenic | 30.0% |
!! | GTTGTTTTCATAACCTATGT+TGG | + | chr7_4:62519002-62519021 | Msa1169470:intron | 30.0% |
TTTCATAAGTTCTCCAACAT+AGG | - | chr7_4:62519018-62519037 | None:intergenic | 30.0% | |
TTCCCCTAACTTTAGATATA+GGG | - | chr7_4:62519153-62519172 | None:intergenic | 30.0% | |
TTTCCCCTAACTTTAGATAT+AGG | - | chr7_4:62519154-62519173 | None:intergenic | 30.0% | |
AAAGTTAGGGGAAAATATAC+AGG | + | chr7_4:62519160-62519179 | Msa1169470:intron | 30.0% | |
!!! | TTCTTTCCAAGCTTTGTTTT+GGG | + | chr7_4:62519183-62519202 | Msa1169470:intron | 30.0% |
AAGTTAAAAATGACACCTGT+GGG | - | chr7_4:62519256-62519275 | None:intergenic | 30.0% | |
TAAGTTAAAAATGACACCTG+TGG | - | chr7_4:62519257-62519276 | None:intergenic | 30.0% | |
! | ATGATCTTGTTGAAGGTTTT+TGG | + | chr7_4:62519278-62519297 | Msa1169470:intron | 30.0% |
! | TGATCTTGTTGAAGGTTTTT+GGG | + | chr7_4:62519279-62519298 | Msa1169470:intron | 30.0% |
TTCCAGTAGTTAAGTAATGA+TGG | + | chr7_4:62519491-62519510 | Msa1169470:intron | 30.0% | |
AATGGTTTCCATAAACAGTA+AGG | - | chr7_4:62519517-62519536 | None:intergenic | 30.0% | |
AAAGTAACAAAACAGGGAAA+GGG | - | chr7_4:62519598-62519617 | None:intergenic | 30.0% | |
AAAAGTAACAAAACAGGGAA+AGG | - | chr7_4:62519599-62519618 | None:intergenic | 30.0% | |
ATTCCTGCTCAAAATATGTA+AGG | - | chr7_4:62519733-62519752 | None:intergenic | 30.0% | |
! | TGATGATGCAAGATACAATT+TGG | + | chr7_4:62519772-62519791 | Msa1169470:CDS | 30.0% |
CTTATTGTGGAATTTGCAAA+AGG | + | chr7_4:62519821-62519840 | Msa1169470:CDS | 30.0% | |
TATTGTGGAATTTGCAAAAG+GGG | + | chr7_4:62519823-62519842 | Msa1169470:CDS | 30.0% | |
TCGTCAAATATATACATGGA+TGG | - | chr7_4:62519996-62520015 | None:intergenic | 30.0% | |
ACACTCGTCAAATATATACA+TGG | - | chr7_4:62520000-62520019 | None:intergenic | 30.0% | |
CAAATTGACAATACTATCTC+CGG | - | chr7_4:62520211-62520230 | None:intergenic | 30.0% | |
GATAGTATTGTCAATTTGCA+AGG | + | chr7_4:62520213-62520232 | Msa1169470:intron | 30.0% | |
!! | AGTTCACTATTCTTGCTTTT+TGG | + | chr7_4:62520309-62520328 | Msa1169470:intron | 30.0% |
AAGTCTTCTTTCATCTTCAA+GGG | - | chr7_4:62520370-62520389 | None:intergenic | 30.0% | |
AAAGTCTTCTTTCATCTTCA+AGG | - | chr7_4:62520371-62520390 | None:intergenic | 30.0% | |
TTATGCTTTACTTTGACTGT+TGG | + | chr7_4:62520589-62520608 | Msa1169470:intron | 30.0% | |
CAACATGATCAGAAATACTA+GGG | - | chr7_4:62520648-62520667 | None:intergenic | 30.0% | |
!!! | TTTTGGGCTTTAAATCATTC+AGG | + | chr7_4:62520677-62520696 | Msa1169470:intron | 30.0% |
AGAACAGTCCAAAAAAATTG+AGG | + | chr7_4:62520883-62520902 | Msa1169470:CDS | 30.0% | |
ATTGCAACAATGCTTTCTAA+TGG | + | chr7_4:62520967-62520986 | Msa1169470:intron | 30.0% | |
! | TTTTCCTTATAAATGAGCTC+AGG | + | chr7_4:62521628-62521647 | Msa1169470:three_prime_UTR | 30.0% |
TGAATGCTTAATGATGCTTA+TGG | + | chr7_4:62521708-62521727 | Msa1169470:three_prime_UTR | 30.0% | |
ATGCTTATGGTTATGAACAA+CGG | + | chr7_4:62521721-62521740 | Msa1169470:three_prime_UTR | 30.0% | |
! | AAAACCTAACCCTTTGAAAG+TGG | - | chr7_4:62518007-62518026 | None:intergenic | 35.0% |
! | CTTTCAAAGGGTTAGGTTTT+CGG | + | chr7_4:62518007-62518026 | Msa1169470:five_prime_UTR | 35.0% |
AGAGAGAAGAGAATAAGGAT+TGG | - | chr7_4:62518050-62518069 | None:intergenic | 35.0% | |
GGAAAAGAGAGAAGAGAATA+AGG | - | chr7_4:62518055-62518074 | None:intergenic | 35.0% | |
TTAAAGGGTGAGTCAATTGA+AGG | - | chr7_4:62518153-62518172 | None:intergenic | 35.0% | |
ATGAAATTGGGAATTGGGAA+TGG | - | chr7_4:62518181-62518200 | None:intergenic | 35.0% | |
GATCGATGAAATTGGGAATT+GGG | - | chr7_4:62518186-62518205 | None:intergenic | 35.0% | |
CAATTCCCAATTTCATCGAT+CGG | + | chr7_4:62518185-62518204 | Msa1169470:intron | 35.0% | |
ACAAACCGATCGATGAAATT+GGG | - | chr7_4:62518193-62518212 | None:intergenic | 35.0% | |
TACAAACCGATCGATGAAAT+TGG | - | chr7_4:62518194-62518213 | None:intergenic | 35.0% | |
TCTCATTCCTAGACTATTAG+AGG | + | chr7_4:62518684-62518703 | Msa1169470:intron | 35.0% | |
AACCTAGCTAGATTAGTGAT+AGG | + | chr7_4:62518809-62518828 | Msa1169470:intron | 35.0% | |
AACCTATCACTAATCTAGCT+AGG | - | chr7_4:62518814-62518833 | None:intergenic | 35.0% | |
AGCTAGATTAGTGATAGGTT+TGG | + | chr7_4:62518814-62518833 | Msa1169470:intron | 35.0% | |
TTATTTGCAGCTTATAGCAC+AGG | + | chr7_4:62518878-62518897 | Msa1169470:intron | 35.0% | |
CTTTAGATATAGGGCCTATT+TGG | - | chr7_4:62519144-62519163 | None:intergenic | 35.0% | |
! | TAGGCCCTATATCTAAAGTT+AGG | + | chr7_4:62519146-62519165 | Msa1169470:intron | 35.0% |
! | AGGCCCTATATCTAAAGTTA+GGG | + | chr7_4:62519147-62519166 | Msa1169470:intron | 35.0% |
!!! | GTTCTTTCCAAGCTTTGTTT+TGG | + | chr7_4:62519182-62519201 | Msa1169470:intron | 35.0% |
! | TTTTGGGCTTGGATTTATGT+TGG | + | chr7_4:62519199-62519218 | Msa1169470:intron | 35.0% |
TTATACCTCATGTTATGCGT+GGG | + | chr7_4:62519222-62519241 | Msa1169470:intron | 35.0% | |
!!! | TTTTGGGTTTTCACTAAACC+CGG | + | chr7_4:62519295-62519314 | Msa1169470:intron | 35.0% |
ATTACACCAAGATTACACCA+AGG | - | chr7_4:62519342-62519361 | None:intergenic | 35.0% | |
! | TGGTGTAATCTTGGTGTAAT+TGG | + | chr7_4:62519342-62519361 | Msa1169470:intron | 35.0% |
! | TGTAATCTTGGTGTAATTGG+TGG | + | chr7_4:62519345-62519364 | Msa1169470:intron | 35.0% |
AATTGGCAACAATCACAAAC+TGG | + | chr7_4:62519431-62519450 | Msa1169470:intron | 35.0% | |
! | AATGATGGCCTTACTGTTTA+TGG | + | chr7_4:62519506-62519525 | Msa1169470:intron | 35.0% |
AGGGTAAGAACTTACAACAA+AGG | - | chr7_4:62519579-62519598 | None:intergenic | 35.0% | |
!! | GTTCCTTACATATTTTGAGC+AGG | + | chr7_4:62519727-62519746 | Msa1169470:intron | 35.0% |
GATGCAAGATACAATTTGGA+TGG | + | chr7_4:62519776-62519795 | Msa1169470:CDS | 35.0% | |
AAGGGGTAGGAATTAATTTC+CGG | + | chr7_4:62519840-62519859 | Msa1169470:intron | 35.0% | |
! | AAAGGTGTAATAAGTACAGC+CGG | - | chr7_4:62519862-62519881 | None:intergenic | 35.0% |
!! | TAGTGAACTCTAAGACACTA+AGG | - | chr7_4:62520298-62520317 | None:intergenic | 35.0% |
GGTTTACTAGCGCTTTATAA+TGG | + | chr7_4:62520417-62520436 | Msa1169470:intron | 35.0% | |
TTATGCTGCTATATAGCAAG+AGG | - | chr7_4:62520467-62520486 | None:intergenic | 35.0% | |
GCAACATGATCAGAAATACT+AGG | - | chr7_4:62520649-62520668 | None:intergenic | 35.0% | |
TTTAAATCATTCAGGTCCCT+CGG | + | chr7_4:62520685-62520704 | Msa1169470:intron | 35.0% | |
CAGTCCAAAAAAATTGAGGT+AGG | + | chr7_4:62520887-62520906 | Msa1169470:intron | 35.0% | |
!!! | ATGGCCTACCTCAATTTTTT+TGG | - | chr7_4:62520894-62520913 | None:intergenic | 35.0% |
AAAAAAATTGAGGTAGGCCA+TGG | + | chr7_4:62520893-62520912 | Msa1169470:intron | 35.0% | |
TTATAAATGAGCTCAGGACT+CGG | + | chr7_4:62521634-62521653 | Msa1169470:three_prime_UTR | 35.0% | |
! | CTAACCCTTTGAAAGTGGAT+CGG | - | chr7_4:62518002-62518021 | None:intergenic | 40.0% |
! | AATAAGGATTGGTACCTTGG+AGG | - | chr7_4:62518039-62518058 | None:intergenic | 40.0% |
! | GAGAATAAGGATTGGTACCT+TGG | - | chr7_4:62518042-62518061 | None:intergenic | 40.0% |
CATGCAATTACAAGATCCGA+TGG | - | chr7_4:62518123-62518142 | None:intergenic | 40.0% | |
CGATCGATGAAATTGGGAAT+TGG | - | chr7_4:62518187-62518206 | None:intergenic | 40.0% | |
!! | TCGATCGGTTTGTATTTCTC+CGG | + | chr7_4:62518200-62518219 | Msa1169470:intron | 40.0% |
GTTCTATCACATTCCATGTC+TGG | + | chr7_4:62518654-62518673 | Msa1169470:intron | 40.0% | |
ATGAGATACACAACCAGACA+TGG | - | chr7_4:62518670-62518689 | None:intergenic | 40.0% | |
ATCCCAAACCTTGTGTTTGT+CGG | + | chr7_4:62518709-62518728 | Msa1169470:intron | 40.0% | |
ATCCGACAAACACAAGGTTT+GGG | - | chr7_4:62518714-62518733 | None:intergenic | 40.0% | |
AATCCGACAAACACAAGGTT+TGG | - | chr7_4:62518715-62518734 | None:intergenic | 40.0% | |
GAACAAATCCGACAAACACA+AGG | - | chr7_4:62518720-62518739 | None:intergenic | 40.0% | |
ATTAGTGATAGGTTTGGCCT+GGG | + | chr7_4:62518820-62518839 | Msa1169470:intron | 40.0% | |
TCAACTACGCCAATCCAAAT+AGG | + | chr7_4:62519127-62519146 | Msa1169470:intron | 40.0% | |
GATATAGGGCCTATTTGGAT+TGG | - | chr7_4:62519139-62519158 | None:intergenic | 40.0% | |
! | GGCCCTATATCTAAAGTTAG+GGG | + | chr7_4:62519148-62519167 | Msa1169470:intron | 40.0% |
GTTATACCTCATGTTATGCG+TGG | + | chr7_4:62519221-62519240 | Msa1169470:intron | 40.0% | |
AAAATGACACCTGTGGGATA+CGG | - | chr7_4:62519250-62519269 | None:intergenic | 40.0% | |
! | TGGTGTTTAGTTCGTCTTTG+AGG | + | chr7_4:62519451-62519470 | Msa1169470:intron | 40.0% |
! | GGTGTTTAGTTCGTCTTTGA+GGG | + | chr7_4:62519452-62519471 | Msa1169470:intron | 40.0% |
! | GTGTTTAGTTCGTCTTTGAG+GGG | + | chr7_4:62519453-62519472 | Msa1169470:intron | 40.0% |
GGCCATCATTACTTAACTAC+TGG | - | chr7_4:62519496-62519515 | None:intergenic | 40.0% | |
AGATAATAGAAGCCGCCTTT+GGG | - | chr7_4:62519655-62519674 | None:intergenic | 40.0% | |
TAGATAATAGAAGCCGCCTT+TGG | - | chr7_4:62519656-62519675 | None:intergenic | 40.0% | |
! | TGATGGAAGTCGTCTTATTG+TGG | + | chr7_4:62519808-62519827 | Msa1169470:CDS | 40.0% |
! | CTAAAGCATCAGCATTAGAC+AGG | - | chr7_4:62519949-62519968 | None:intergenic | 40.0% |
CTAGCGCTTTATAATGGCTT+TGG | + | chr7_4:62520423-62520442 | Msa1169470:intron | 40.0% | |
TTAAATCATTCAGGTCCCTC+GGG | + | chr7_4:62520686-62520705 | Msa1169470:intron | 40.0% | |
! | TCGGGATTCTAGGGAATATT+TGG | + | chr7_4:62520722-62520741 | Msa1169470:CDS | 40.0% |
! | CGGGATTCTAGGGAATATTT+GGG | + | chr7_4:62520723-62520742 | Msa1169470:CDS | 40.0% |
! | TGCTTTAACTGTGGCATTGA+TGG | + | chr7_4:62520774-62520793 | Msa1169470:CDS | 40.0% |
TTAAGATTACAGCACCAGCT+TGG | - | chr7_4:62520929-62520948 | None:intergenic | 40.0% | |
TTCTGACAGGAGATCTTGAT+CGG | - | chr7_4:62521284-62521303 | None:intergenic | 40.0% | |
GTGATCTATCTGAAGGAACT+GGG | - | chr7_4:62521317-62521336 | None:intergenic | 40.0% | |
CAGTTCCTTCAGATAGATCA+CGG | + | chr7_4:62521316-62521335 | Msa1169470:CDS | 40.0% | |
!! | CTATACTTCCTTGACTTGGA+AGG | - | chr7_4:62521351-62521370 | None:intergenic | 40.0% |
TCGACTATACTTCCTTGACT+TGG | - | chr7_4:62521355-62521374 | None:intergenic | 40.0% | |
AAGTATAGTCGATCTCCTGA+AGG | + | chr7_4:62521363-62521382 | Msa1169470:CDS | 40.0% | |
ACTGTAATCAGACCCATCTT+GGG | - | chr7_4:62521436-62521455 | None:intergenic | 40.0% | |
TATCTTCATTGTCCCTTGAG+GGG | - | chr7_4:62521485-62521504 | None:intergenic | 40.0% | |
CTATCTTCATTGTCCCTTGA+GGG | - | chr7_4:62521486-62521505 | None:intergenic | 40.0% | |
AAGATAGCCCTAAGGCTAAT+GGG | + | chr7_4:62521499-62521518 | Msa1169470:CDS | 40.0% | |
GAGTCCTGAGCTCATTTATA+AGG | - | chr7_4:62521635-62521654 | None:intergenic | 40.0% | |
ACAATTGTTGCAACCAACAG+AGG | - | chr7_4:62521774-62521793 | None:intergenic | 40.0% | |
AGAAGCCGATCCACTTTCAA+AGG | + | chr7_4:62517994-62518013 | Msa1169470:five_prime_UTR | 45.0% | |
GAAGCCGATCCACTTTCAAA+GGG | + | chr7_4:62517995-62518014 | Msa1169470:five_prime_UTR | 45.0% | |
CGATCCACTTTCAAAGGGTT+AGG | + | chr7_4:62518000-62518019 | Msa1169470:five_prime_UTR | 45.0% | |
CCATACTTATCATCGTAGCG+AGG | - | chr7_4:62518442-62518461 | None:intergenic | 45.0% | |
CCTCGCTACGATGATAAGTA+TGG | + | chr7_4:62518439-62518458 | Msa1169470:CDS | 45.0% | |
AAGACAAACGACCCACATAG+AGG | - | chr7_4:62518474-62518493 | None:intergenic | 45.0% | |
GGGATCTCCTCTAATAGTCT+AGG | - | chr7_4:62518694-62518713 | None:intergenic | 45.0% | |
CAAAGTGACACAAGGAGACA+TGG | - | chr7_4:62518788-62518807 | None:intergenic | 45.0% | |
CTAGGTTGCAAAGTGACACA+AGG | - | chr7_4:62518796-62518815 | None:intergenic | 45.0% | |
GATTAGTGATAGGTTTGGCC+TGG | + | chr7_4:62518819-62518838 | Msa1169470:intron | 45.0% | |
TTAGTGATAGGTTTGGCCTG+GGG | + | chr7_4:62518821-62518840 | Msa1169470:intron | 45.0% | |
!!! | TCCAAGCTTTGTTTTGGGCT+TGG | + | chr7_4:62519188-62519207 | Msa1169470:intron | 45.0% |
TCCAAGCCCAAAACAAAGCT+TGG | - | chr7_4:62519192-62519211 | None:intergenic | 45.0% | |
!! | TCCTACCTGAGTGTTGACTT+TGG | + | chr7_4:62519372-62519391 | Msa1169470:intron | 45.0% |
AATCGCCAAAGTCAACACTC+AGG | - | chr7_4:62519380-62519399 | None:intergenic | 45.0% | |
ATGTTCATTGCTCTGCCCAA+AGG | + | chr7_4:62519637-62519656 | Msa1169470:intron | 45.0% | |
GGCGGCTTCTATTATCTACA+CGG | + | chr7_4:62519658-62519677 | Msa1169470:intron | 45.0% | |
GCGGCTTCTATTATCTACAC+GGG | + | chr7_4:62519659-62519678 | Msa1169470:intron | 45.0% | |
CGGCTTCTATTATCTACACG+GGG | + | chr7_4:62519660-62519679 | Msa1169470:intron | 45.0% | |
GGCTTCTATTATCTACACGG+GGG | + | chr7_4:62519661-62519680 | Msa1169470:intron | 45.0% | |
TTGGATGGTCGCGATATTGA+TGG | + | chr7_4:62519791-62519810 | Msa1169470:CDS | 45.0% | |
GTGGAATTTGCAAAAGGGGT+AGG | + | chr7_4:62519827-62519846 | Msa1169470:intron | 45.0% | |
TAAATCATTCAGGTCCCTCG+GGG | + | chr7_4:62520687-62520706 | Msa1169470:intron | 45.0% | |
TCTAGGGAATATTTGGGTCG+AGG | + | chr7_4:62520729-62520748 | Msa1169470:CDS | 45.0% | |
AAGAACAAGTGTTACCGCTG+TGG | + | chr7_4:62520831-62520850 | Msa1169470:CDS | 45.0% | |
AGAACAAGTGTTACCGCTGT+GGG | + | chr7_4:62520832-62520851 | Msa1169470:CDS | 45.0% | |
CGTGATCTATCTGAAGGAAC+TGG | - | chr7_4:62521318-62521337 | None:intergenic | 45.0% | |
!! | TACTTCCTTGACTTGGAAGG+CGG | - | chr7_4:62521348-62521367 | None:intergenic | 45.0% |
CACTGTAATCAGACCCATCT+TGG | - | chr7_4:62521437-62521456 | None:intergenic | 45.0% | |
GATGGGTCTGATTACAGTGA+TGG | + | chr7_4:62521438-62521457 | Msa1169470:CDS | 45.0% | |
GCTATCTTCATTGTCCCTTG+AGG | - | chr7_4:62521487-62521506 | None:intergenic | 45.0% | |
GGACAATGAAGATAGCCCTA+AGG | + | chr7_4:62521491-62521510 | Msa1169470:CDS | 45.0% | |
GAAGATAGCCCTAAGGCTAA+TGG | + | chr7_4:62521498-62521517 | Msa1169470:CDS | 45.0% | |
TTGTCATCATCCTCCTCTAC+GGG | - | chr7_4:62521576-62521595 | None:intergenic | 45.0% | |
GTTGTCATCATCCTCCTCTA+CGG | - | chr7_4:62521577-62521596 | None:intergenic | 45.0% | |
! | GTTTTCGGCAATCTCCTCCA+AGG | + | chr7_4:62518022-62518041 | Msa1169470:five_prime_UTR | 50.0% |
TGGCAATACTCGCCTCTATG+TGG | + | chr7_4:62518459-62518478 | Msa1169470:CDS | 50.0% | |
GGCAATACTCGCCTCTATGT+GGG | + | chr7_4:62518460-62518479 | Msa1169470:CDS | 50.0% | |
GGGTCTTCAGCAGATATGGA+AGG | + | chr7_4:62518521-62518540 | Msa1169470:CDS | 50.0% | |
! | TGGGTTTTCACTAAACCCGG+AGG | + | chr7_4:62519298-62519317 | Msa1169470:intron | 50.0% |
GCCAAAGTCAACACTCAGGT+AGG | - | chr7_4:62519376-62519395 | None:intergenic | 50.0% | |
TATCCACATCTCGAACGCTG+CGG | - | chr7_4:62519541-62519560 | None:intergenic | 50.0% | |
TTCATTGCTCTGCCCAAAGG+CGG | + | chr7_4:62519640-62519659 | Msa1169470:intron | 50.0% | |
CACGGGGGAGTTCAATTATG+CGG | + | chr7_4:62519676-62519695 | Msa1169470:intron | 50.0% | |
CTTGCATCATCAGCATCTCG+AGG | - | chr7_4:62519764-62519783 | None:intergenic | 50.0% | |
CCTAGAATCCCGAGAATCAC+GGG | - | chr7_4:62520715-62520734 | None:intergenic | 50.0% | |
CCCTAGAATCCCGAGAATCA+CGG | - | chr7_4:62520716-62520735 | None:intergenic | 50.0% | |
CCGTGATTCTCGGGATTCTA+GGG | + | chr7_4:62520713-62520732 | Msa1169470:CDS | 50.0% | |
TTAAAGCAGCGTCCAGATCC+AGG | - | chr7_4:62520762-62520781 | None:intergenic | 50.0% | |
! | TCTGGACGCTGCTTTAACTG+TGG | + | chr7_4:62520765-62520784 | Msa1169470:CDS | 50.0% |
GAGATTGCAAAGCTGGGGAT+TGG | + | chr7_4:62520808-62520827 | Msa1169470:CDS | 50.0% | |
GAACAAGTGTTACCGCTGTG+GGG | + | chr7_4:62520833-62520852 | Msa1169470:CDS | 50.0% | |
ATTGAGGTAGGCCATGGTGT+TGG | + | chr7_4:62520899-62520918 | Msa1169470:intron | 50.0% | |
TTGAGGTAGGCCATGGTGTT+GGG | + | chr7_4:62520900-62520919 | Msa1169470:intron | 50.0% | |
! | CGAAGTGTTTCACGTTCTCC+AGG | + | chr7_4:62521048-62521067 | Msa1169470:CDS | 50.0% |
GGACTCCGTGATCTATCTGA+AGG | - | chr7_4:62521324-62521343 | None:intergenic | 50.0% | |
!! | CTCTTTTGTGGACTGCCTTC+AGG | - | chr7_4:62521381-62521400 | None:intergenic | 50.0% |
! | CACAAAAGAGCGCATCTCCT+GGG | + | chr7_4:62521391-62521410 | Msa1169470:CDS | 50.0% |
CGCATCTCCTGGGAATGATA+GGG | + | chr7_4:62521401-62521420 | Msa1169470:CDS | 50.0% | |
ATCTCCTGGGAATGATAGGG+TGG | + | chr7_4:62521404-62521423 | Msa1169470:CDS | 50.0% | |
TGTCATCATCCTCCTCTACG+GGG | - | chr7_4:62521575-62521594 | None:intergenic | 50.0% | |
ACGAACTCGTTCCCGTGATC+TGG | + | chr7_4:62518495-62518514 | Msa1169470:CDS | 55.0% | |
TGAAGACCCGCTCCAGATCA+CGG | - | chr7_4:62518510-62518529 | None:intergenic | 55.0% | |
GAGCGGGTCTTCAGCAGATA+TGG | + | chr7_4:62518517-62518536 | Msa1169470:CDS | 55.0% | |
CCAAACAGGCCCACAGACAA+TGG | - | chr7_4:62518849-62518868 | None:intergenic | 55.0% | |
CCATTGTCTGTGGGCCTGTT+TGG | + | chr7_4:62518846-62518865 | Msa1169470:intron | 55.0% | |
CGGTTCCCACGCATAACATG+AGG | - | chr7_4:62519230-62519249 | None:intergenic | 55.0% | |
TCACTAAACCCGGAGGTCTG+TGG | + | chr7_4:62519305-62519324 | Msa1169470:intron | 55.0% | |
TAAACCCGGAGGTCTGTGGT+GGG | + | chr7_4:62519309-62519328 | Msa1169470:intron | 55.0% | |
! | GGGTGGCCTTGGTGTAATCT+TGG | + | chr7_4:62519333-62519352 | Msa1169470:intron | 55.0% |
CATCTCGAACGCTGCGGAAA+TGG | - | chr7_4:62519535-62519554 | None:intergenic | 55.0% | |
TTTCCGCAGCGTTCGAGATG+TGG | + | chr7_4:62519535-62519554 | Msa1169470:intron | 55.0% | |
CCCGTGATTCTCGGGATTCT+AGG | + | chr7_4:62520712-62520731 | Msa1169470:CDS | 55.0% | |
!! | ACTGTGGCATTGATGGCCAC+TGG | + | chr7_4:62520781-62520800 | Msa1169470:CDS | 55.0% |
!! | CTGTGGCATTGATGGCCACT+GGG | + | chr7_4:62520782-62520801 | Msa1169470:CDS | 55.0% |
CTTTGCAATCTCGAGCCCAG+TGG | - | chr7_4:62520800-62520819 | None:intergenic | 55.0% | |
TGGGCTCGAGATTGCAAAGC+TGG | + | chr7_4:62520801-62520820 | Msa1169470:CDS | 55.0% | |
GGGCTCGAGATTGCAAAGCT+GGG | + | chr7_4:62520802-62520821 | Msa1169470:CDS | 55.0% | |
GGCTCGAGATTGCAAAGCTG+GGG | + | chr7_4:62520803-62520822 | Msa1169470:CDS | 55.0% | |
TATGACCTCTCTCCCCACAG+CGG | - | chr7_4:62520848-62520867 | None:intergenic | 55.0% | |
! | TGAGGTAGGCCATGGTGTTG+GGG | + | chr7_4:62520901-62520920 | Msa1169470:intron | 55.0% |
AGCTTGGAACCCCAACACCA+TGG | - | chr7_4:62520913-62520932 | None:intergenic | 55.0% | |
! | ATGGTGTTGGGGTTCCAAGC+TGG | + | chr7_4:62520912-62520931 | Msa1169470:intron | 55.0% |
GTGTTTCACGTTCTCCAGGC+AGG | + | chr7_4:62521052-62521071 | Msa1169470:CDS | 55.0% | |
TCTCCTAGGAGAACGAGACC+TGG | - | chr7_4:62521109-62521128 | None:intergenic | 55.0% | |
AGGTCTCGTTCTCCTAGGAG+AGG | + | chr7_4:62521108-62521127 | Msa1169470:CDS | 55.0% | |
ACTGACCTATAGCTGCGAGC+CGG | - | chr7_4:62521159-62521178 | None:intergenic | 55.0% | |
GACAGGAGATCTTGATCGGC+TGG | - | chr7_4:62521280-62521299 | None:intergenic | 55.0% | |
GGGCTTCGATCTCTTCTGAC+AGG | - | chr7_4:62521297-62521316 | None:intergenic | 55.0% | |
!! | TTCCTTGACTTGGAAGGCGG+AGG | - | chr7_4:62521345-62521364 | None:intergenic | 55.0% |
! | CCAGGAGATGCGCTCTTTTG+TGG | - | chr7_4:62521393-62521412 | None:intergenic | 55.0% |
! | CCACAAAAGAGCGCATCTCC+TGG | + | chr7_4:62521390-62521409 | Msa1169470:CDS | 55.0% |
GCGCATCTCCTGGGAATGAT+AGG | + | chr7_4:62521400-62521419 | Msa1169470:CDS | 55.0% | |
GCAACCACCCTATCATTCCC+AGG | - | chr7_4:62521411-62521430 | None:intergenic | 55.0% | |
AGGGTGGTTGCAACCCAAGA+TGG | + | chr7_4:62521420-62521439 | Msa1169470:CDS | 55.0% | |
GGGTGGTTGCAACCCAAGAT+GGG | + | chr7_4:62521421-62521440 | Msa1169470:CDS | 55.0% | |
TGAAGAGCAGAAGCCCCTCA+AGG | + | chr7_4:62521469-62521488 | Msa1169470:CDS | 55.0% | |
GAAGAGCAGAAGCCCCTCAA+GGG | + | chr7_4:62521470-62521489 | Msa1169470:CDS | 55.0% | |
!! | TGCTGCGCCCATTAGCCTTA+GGG | - | chr7_4:62521509-62521528 | None:intergenic | 55.0% |
CTCGTTCCCGTGATCTGGAG+CGG | + | chr7_4:62518500-62518519 | Msa1169470:CDS | 60.0% | |
! | TCGTTCCCGTGATCTGGAGC+GGG | + | chr7_4:62518501-62518520 | Msa1169470:CDS | 60.0% |
GAAGACCCGCTCCAGATCAC+GGG | - | chr7_4:62518509-62518528 | None:intergenic | 60.0% | |
!! | CCTGGGGTGCCATTGTCTGT+GGG | + | chr7_4:62518837-62518856 | Msa1169470:intron | 60.0% |
CTAAACCCGGAGGTCTGTGG+TGG | + | chr7_4:62519308-62519327 | Msa1169470:intron | 60.0% | |
GAGAATCACGGGAACCCCGA+GGG | - | chr7_4:62520704-62520723 | None:intergenic | 60.0% | |
CTCGGGGTTCCCGTGATTCT+CGG | + | chr7_4:62520703-62520722 | Msa1169470:CDS | 60.0% | |
TCGGGGTTCCCGTGATTCTC+GGG | + | chr7_4:62520704-62520723 | Msa1169470:CDS | 60.0% | |
AAGCAGCGTCCAGATCCAGG+AGG | - | chr7_4:62520759-62520778 | None:intergenic | 60.0% | |
TGTTACCGCTGTGGGGAGAG+AGG | + | chr7_4:62520840-62520859 | Msa1169470:CDS | 60.0% | |
CTAGGAGAACGAGACCTGGC+TGG | - | chr7_4:62521105-62521124 | None:intergenic | 60.0% | |
CAGCCAGGTCTCGTTCTCCT+AGG | + | chr7_4:62521103-62521122 | Msa1169470:CDS | 60.0% | |
TCACGGCTTCTGCCTCTCCT+AGG | - | chr7_4:62521123-62521142 | None:intergenic | 60.0% | |
CCGGGCTGTAGCTTCTGTCA+CGG | - | chr7_4:62521140-62521159 | None:intergenic | 60.0% | |
CCGTGACAGAAGCTACAGCC+CGG | + | chr7_4:62521137-62521156 | Msa1169470:CDS | 60.0% | |
CTGACCTATAGCTGCGAGCC+GGG | - | chr7_4:62521158-62521177 | None:intergenic | 60.0% | |
GTCCTCCGCCTTCCAAGTCA+AGG | + | chr7_4:62521340-62521359 | Msa1169470:CDS | 60.0% | |
!! | CTGCTGCGCCCATTAGCCTT+AGG | - | chr7_4:62521510-62521529 | None:intergenic | 60.0% |
TATCCTCATCCCTGGGGCTG+CGG | - | chr7_4:62521548-62521567 | None:intergenic | 60.0% | |
GGCTCCTATCCTCATCCCTG+GGG | - | chr7_4:62521554-62521573 | None:intergenic | 60.0% | |
GGGCTCCTATCCTCATCCCT+GGG | - | chr7_4:62521555-62521574 | None:intergenic | 60.0% | |
TGAGGATAGGAGCCCCGTAG+AGG | + | chr7_4:62521560-62521579 | Msa1169470:CDS | 60.0% | |
AATGAGCTCAGGACTCGGCC+AGG | + | chr7_4:62521639-62521658 | Msa1169470:three_prime_UTR | 60.0% | |
!! | GCCTGGGGTGCCATTGTCTG+TGG | + | chr7_4:62518836-62518855 | Msa1169470:intron | 65.0% |
CCCACAGACAATGGCACCCC+AGG | - | chr7_4:62518840-62518859 | None:intergenic | 65.0% | |
GCGTGGGAACCGTATCCCAC+AGG | + | chr7_4:62519238-62519257 | Msa1169470:intron | 65.0% | |
ACCCTCCCACCACAGACCTC+CGG | - | chr7_4:62519317-62519336 | None:intergenic | 65.0% | |
CGAGAATCACGGGAACCCCG+AGG | - | chr7_4:62520705-62520724 | None:intergenic | 65.0% | |
TTGGGTCGAGGTCCACCTCC+TGG | + | chr7_4:62520741-62520760 | Msa1169470:CDS | 65.0% | |
CGAGGTCCACCTCCTGGATC+TGG | + | chr7_4:62520747-62520766 | Msa1169470:CDS | 65.0% | |
CAGCGTCCAGATCCAGGAGG+TGG | - | chr7_4:62520756-62520775 | None:intergenic | 65.0% | |
GCTGGAGAACGTGACCTGCC+TGG | - | chr7_4:62521069-62521088 | None:intergenic | 65.0% | |
GCAGGTCACGTTCTCCAGCC+AGG | + | chr7_4:62521070-62521089 | Msa1169470:CDS | 65.0% | |
GCTGGAGAACGAGACCTGGC+TGG | - | chr7_4:62521087-62521106 | None:intergenic | 65.0% | |
CCTGGCTGGAGAACGAGACC+TGG | - | chr7_4:62521091-62521110 | None:intergenic | 65.0% | |
CCAGGTCTCGTTCTCCAGCC+AGG | + | chr7_4:62521088-62521107 | Msa1169470:CDS | 65.0% | |
! | ACAGCCCGGCTCGCAGCTAT+AGG | + | chr7_4:62521151-62521170 | Msa1169470:CDS | 65.0% |
GCAGCCCCAGGGATGAGGAT+AGG | + | chr7_4:62521547-62521566 | Msa1169470:CDS | 65.0% | |
GGGGCTCCTATCCTCATCCC+TGG | - | chr7_4:62521556-62521575 | None:intergenic | 65.0% | |
GGATAGGAGCCCCGTAGAGG+AGG | + | chr7_4:62521563-62521582 | Msa1169470:CDS | 65.0% | |
! | ACCCGGAGGTCTGTGGTGGG+AGG | + | chr7_4:62519312-62519331 | Msa1169470:intron | 70.0% |
CCCTCCCACCACAGACCTCC+GGG | - | chr7_4:62519316-62519335 | None:intergenic | 70.0% | |
! | CCCGGAGGTCTGTGGTGGGA+GGG | + | chr7_4:62519313-62519332 | Msa1169470:intron | 70.0% |
! | GGAGGTCTGTGGTGGGAGGG+TGG | + | chr7_4:62519316-62519335 | Msa1169470:intron | 70.0% |
! | CTGTGGTGGGAGGGTGGCCT+TGG | + | chr7_4:62519322-62519341 | Msa1169470:intron | 70.0% |
TGGGGCTGCGGCTGCGGCTT+CGG | - | chr7_4:62521536-62521555 | None:intergenic | 75.0% | |
AAGCCGCAGCCGCAGCCCCA+GGG | + | chr7_4:62521536-62521555 | Msa1169470:CDS | 75.0% | |
CATCCCTGGGGCTGCGGCTG+CGG | - | chr7_4:62521542-62521561 | None:intergenic | 75.0% | |
CAGCCGCAGCCCCAGGGATG+AGG | + | chr7_4:62521542-62521561 | Msa1169470:CDS | 75.0% | |
! | GAAGCCGCAGCCGCAGCCCC+AGG | + | chr7_4:62521535-62521554 | Msa1169470:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 62517957 | 62521953 | 62517957 | ID=Msa1169470;Name=Msa1169470 |
chr7_4 | mRNA | 62517957 | 62521953 | 62517957 | ID=Msa1169470-mRNA-1;Parent=Msa1169470;Name=Msa1169470-mRNA-1;_AED=0.23;_eAED=0.23;_QI=103|1|1|1|0.83|0.71|7|333|307 |
chr7_4 | exon | 62517957 | 62518043 | 62517957 | ID=Msa1169470-mRNA-1:exon:19837;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62518420 | 62518542 | 62518420 | ID=Msa1169470-mRNA-1:exon:19838;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62519544 | 62519583 | 62519544 | ID=Msa1169470-mRNA-1:exon:19839;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62519749 | 62519844 | 62519749 | ID=Msa1169470-mRNA-1:exon:19840;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62520699 | 62520904 | 62520699 | ID=Msa1169470-mRNA-1:exon:19841;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62521038 | 62521172 | 62521038 | ID=Msa1169470-mRNA-1:exon:19842;Parent=Msa1169470-mRNA-1 |
chr7_4 | exon | 62521281 | 62521953 | 62521281 | ID=Msa1169470-mRNA-1:exon:19843;Parent=Msa1169470-mRNA-1 |
chr7_4 | five_prime_UTR | 62517957 | 62518043 | 62517957 | ID=Msa1169470-mRNA-1:five_prime_utr;Parent=Msa1169470-mRNA-1 |
chr7_4 | five_prime_UTR | 62518420 | 62518435 | 62518420 | ID=Msa1169470-mRNA-1:five_prime_utr;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62518436 | 62518542 | 62518436 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62519544 | 62519583 | 62519544 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62519749 | 62519844 | 62519749 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62520699 | 62520904 | 62520699 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62521038 | 62521172 | 62521038 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | CDS | 62521281 | 62521620 | 62521281 | ID=Msa1169470-mRNA-1:cds;Parent=Msa1169470-mRNA-1 |
chr7_4 | three_prime_UTR | 62521621 | 62521953 | 62521621 | ID=Msa1169470-mRNA-1:three_prime_utr;Parent=Msa1169470-mRNA-1 |
Gene Sequence |
Protein sequence |