AlfalfaGEDB | Msa0376850

M. sativa cultivar zhongmu-4 / Msa0376850

KEGG: K02942
GO: GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00428.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376850	XP_003602368.1	99.091	110	1	0	1	110	1	110	2.69e-70	215

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376850	sp\|P52855\|RLA1_MAIZE	70.909	110	31	1	1	110	1	109	3.81e-29	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376850	G7J8Y6	99.091	110	1	0	1	110	1	110	1.28e-70	215

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0376850	0.822066	2.888996e-53	-8.615850e-47
Msa0003030	Msa0376850	0.857194	1.927092e-62	-8.615850e-47
Msa0003330	Msa0376850	0.827990	1.152982e-54	-8.615850e-47
Msa0027590	Msa0376850	0.813346	2.681591e-51	-8.615850e-47
Msa0042510	Msa0376850	0.860723	1.693047e-63	-8.615850e-47
Msa0079560	Msa0376850	0.849680	2.768002e-60	-8.615850e-47
Msa0127230	Msa0376850	0.842657	2.261528e-58	-8.615850e-47
Msa0146910	Msa0376850	0.853936	1.718652e-61	-8.615850e-47
Msa0167860	Msa0376850	0.843186	1.635526e-58	-8.615850e-47
Msa0168320	Msa0376850	0.874417	6.865129e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376850	MtrunA17_Chr3g0127831	99.091	110	1	0	1	110	1	110	2.47e-74	215
Msa0376850	MtrunA17_Chr2g0311301	98.182	110	2	0	1	110	1	110	8.45e-74	214
Msa0376850	MtrunA17_Chr4g0013621	91.818	110	9	0	1	110	1	110	2.10e-45	142
Msa0376850	MtrunA17_Chr8g0345951	64.545	110	37	2	1	110	1	108	1.12e-33	112
Msa0376850	MtrunA17_Chr7g0276131	62.712	59	22	0	1	59	1	59	7.89e-21	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376850	AT5G24510.1	57.391	115	40	4	1	110	1	111	4.31e-36	119
Msa0376850	AT5G47700.1	57.658	111	45	1	2	110	3	113	8.30e-29	100
Msa0376850	AT5G47700.2	57.658	111	45	1	2	110	3	113	8.30e-29	100
Msa0376850	AT1G01100.4	60.185	108	42	1	4	110	5	112	4.43e-28	99.0
Msa0376850	AT1G01100.1	60.185	108	42	1	4	110	5	112	4.43e-28	99.0
Msa0376850	AT1G01100.2	60.185	108	42	1	4	110	5	112	4.43e-28	99.0
Msa0376850	AT1G01100.3	50.459	109	39	1	2	110	3	96	2.22e-27	96.7
Msa0376850	AT4G00810.1	54.955	111	48	1	2	110	3	113	2.98e-27	97.1
Msa0376850	AT4G00810.2	54.955	111	48	1	2	110	3	113	2.98e-27	97.1

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Find 50 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTTCAAAATTAACC+TGG	0.590654	3_1:+77170488	None:intergenic
AAAATGAGTTCCGGCGAATT+GGG	0.368280	3_1:-77172072	Msa0376850:CDS
AAGGCCCAATCAATTAACCT+AGG	0.578918	3_1:-77172192	Msa0376850:five_prime_UTR
ACAATTCACAAAATGAGTTC+CGG	0.522809	3_1:-77172081	Msa0376850:exon
ACCAGCAGCGGGTGCAGATA+CGG	0.530473	3_1:+77171759	None:intergenic
ACCTGCCGCCGTTGAAAAGA+AGG	0.476631	3_1:-77171713	Msa0376850:intron
ACCTTGATCCTCCACGACGA+TGG	0.573503	3_1:-77172036	Msa0376850:CDS
ACGTCACCGTTGAATCTTAC+TGG	0.348075	3_1:-77171867	Msa0376850:CDS
AGAAACCTAGGTTAATTGAT+TGG	0.340250	3_1:+77172187	None:intergenic
AGCGGCACCACCAACAGCGC+CGG	0.527844	3_1:+77171786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACCTAGGTTAATTGATT+GGG	+	chr3_1:77170502-77170521	None:intergenic	30.0%
AGAAACCTAGGTTAATTGAT+TGG	+	chr3_1:77170503-77170522	None:intergenic	30.0%
ACAATTCACAAAATGAGTTC+CGG	-	chr3_1:77170606-77170625	Msa0376850:three_prime_UTR	30.0%
ATAATAGACTTACGGTGATT+GGG	+	chr3_1:77170680-77170699	None:intergenic	30.0%
TGTAATGATGAGTTACTGAT+TGG	-	chr3_1:77171046-77171065	Msa0376850:intron	30.0%
TGTTAAATGAATGCTAGTTC+TGG	-	chr3_1:77171123-77171142	Msa0376850:intron	30.0%
AGATGCAAGTTCTACAAAAT+AGG	+	chr3_1:77171274-77171293	None:intergenic	30.0%
AAAAGATATAATTTCCTCGG+AGG	-	chr3_1:77171300-77171319	Msa0376850:intron	30.0%
AAAGATATAATTTCCTCGGA+GGG	-	chr3_1:77171301-77171320	Msa0376850:intron	30.0%
CAGCAAATGACAGTATTTAT+CGG	+	chr3_1:77171337-77171356	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	77170498	77172211	77170498	ID=Msa0376850;Name=Msa0376850
chr3_1	mRNA	77170498	77172211	77170498	ID=Msa0376850-mRNA-1;Parent=Msa0376850;Name=Msa0376850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=120\|1\|1\|1\|1\|1\|3\|239\|110
chr3_1	exon	77170498	77170790	77170498	ID=Msa0376850-mRNA-1:exon:18419;Parent=Msa0376850-mRNA-1
chr3_1	exon	77171714	77171923	77171714	ID=Msa0376850-mRNA-1:exon:18418;Parent=Msa0376850-mRNA-1
chr3_1	exon	77172023	77172211	77172023	ID=Msa0376850-mRNA-1:exon:18417;Parent=Msa0376850-mRNA-1
chr3_1	five_prime_UTR	77172092	77172211	77172092	ID=Msa0376850-mRNA-1:five_prime_utr;Parent=Msa0376850-mRNA-1
chr3_1	CDS	77172023	77172091	77172023	ID=Msa0376850-mRNA-1:cds;Parent=Msa0376850-mRNA-1
chr3_1	CDS	77171714	77171923	77171714	ID=Msa0376850-mRNA-1:cds;Parent=Msa0376850-mRNA-1
chr3_1	CDS	77170737	77170790	77170737	ID=Msa0376850-mRNA-1:cds;Parent=Msa0376850-mRNA-1
chr3_1	three_prime_UTR	77170498	77170736	77170498	ID=Msa0376850-mRNA-1:three_prime_utr;Parent=Msa0376850-mRNA-1

Gene Sequence	>Msa0376850 ATGAGTTCCGGCGAATTGGGCTGCATTTACGCCACCTTGATCCTCCACGACGATGGAATCCCAATCACCGCGGAGAAGATCGGTACTTTGTTGAAGGCTGCTAACGTCACCGTTGAATCTTACTGGCCAAGCCTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGATGATCTCGTTTTGAACTCCGGCGCTGTTGGTGGTGCCGCTGTTGCCGTATCTGCACCCGCTGCTGGTGGTGGAGCCGCAGCAGCTGCCGAACCTGCCGCCGTTGAAAAGAAGGAGGAAGCCAAGGAAGAAAGTGACGATGACATGGGCTTTAGTTTGTTTGATTAA
Protein sequence	>Msa0376850 MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVLNSGAVGGAAVAVSAPAAGGGAAAAAEPAAVEKKEEAKEESDDDMGFSLFD*