AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078480 MtrunA17_Chr7g0263341 98.371 307 3 1 1 307 1 305 0.0 572
Msa1078480 MtrunA17_Chr1g0192221 51.190 84 35 2 13 91 40 122 9.18e-16 76.3
Msa1078480 MtrunA17_Chr7g0269331 46.429 84 39 2 13 91 9 91 1.31e-12 67.0
Msa1078480 MtrunA17_Chr8g0357591 33.621 116 61 4 13 120 245 352 2.05e-11 64.7
Msa1078480 MtrunA17_Chr7g0272311 44.595 74 36 1 13 81 9 82 8.13e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078480 AT3G53500.2 64.706 255 66 5 1 238 1 248 3.55e-86 260
Msa1078480 AT2G37340.1 81.457 151 22 1 1 151 1 145 6.10e-86 260
Msa1078480 AT2G37340.5 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1078480 AT2G37340.3 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1078480 AT3G53500.1 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1078480 AT3G53500.3 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1078480 AT2G37340.2 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078480 AT2G37340.6 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078480 AT2G37340.4 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078480 AT4G02430.1 50.000 82 36 1 13 89 9 90 1.05e-15 74.3
Msa1078480 AT1G09140.3 50.649 77 33 1 10 81 6 82 4.03e-15 73.9
Msa1078480 AT1G09140.1 50.649 77 33 1 10 81 6 82 4.59e-15 74.3
Msa1078480 AT1G09140.2 50.649 77 33 1 10 81 6 82 5.42e-15 73.9
Msa1078480 AT4G02430.3 50.000 82 36 1 13 89 9 90 7.25e-15 73.6
Msa1078480 AT4G02430.4 50.000 82 36 1 13 89 9 90 8.07e-15 73.9
Msa1078480 AT1G02840.1 48.780 82 37 1 13 89 9 90 4.34e-14 72.0
Msa1078480 AT1G02840.4 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078480 AT1G02840.5 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078480 AT1G02840.3 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078480 AT1G02840.2 48.780 82 37 1 13 89 9 90 9.92e-14 70.5
Msa1078480 AT1G53720.1 31.933 119 68 2 13 123 245 358 3.95e-12 67.0
Msa1078480 AT3G61860.1 32.479 234 124 8 13 216 4 233 9.85e-12 64.7

Find 129 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGATTCTAGGGAATATT+TGG 0.121434 7_2:-77421400 Msa1078480:CDS
CTGCTGCGCCCATTAGCCTT+AGG 0.207621 7_2:+77420615 None:intergenic
CCCGTGATTCTCGGGATTCT+AGG 0.293289 7_2:-77421410 Msa1078480:CDS
TGGGGCTGCGGCTGCGGCTT+CGG 0.294948 7_2:+77420589 None:intergenic
TGGCTAATGTAATAAGAAAA+AGG 0.315290 7_2:+77420230 None:intergenic
TGCTTTAACTGTGGCATTGA+TGG 0.325784 7_2:-77421348 Msa1078480:CDS
CTCGGGGTTCCCGTGATTCT+CGG 0.326338 7_2:-77421419 Msa1078480:CDS
ACGAACTCGTTCCCGTGATC+TGG 0.327875 7_2:-77423627 Msa1078480:CDS
GCGCATCTCCTGGGAATGAT+AGG 0.340026 7_2:-77420722 Msa1078480:CDS
CATCCCTGGGGCTGCGGCTG+CGG 0.349340 7_2:+77420583 None:intergenic
CTATCTTCATTGTCCCTTGA+GGG 0.366692 7_2:+77420639 None:intergenic
CGGGATTCTAGGGAATATTT+GGG 0.369880 7_2:-77421399 Msa1078480:CDS
GAAGCCGCAGCCGCAGCCCC+AGG 0.370362 7_2:-77420587 Msa1078480:CDS
CACTGTAATCAGACCCATCT+TGG 0.371288 7_2:+77420688 None:intergenic
TGGGCTCGAGATTGCAAAGC+TGG 0.378836 7_2:-77421321 Msa1078480:CDS
GGGGCTCCTATCCTCATCCC+TGG 0.383826 7_2:+77420569 None:intergenic
CCTCGCTACGATGATAAGTA+TGG 0.384992 7_2:-77423683 Msa1078480:CDS
ACAGCCCGGCTCGCAGCTAT+AGG 0.385941 7_2:-77420971 Msa1078480:intron
CGTGATCTATCTGAAGGAAC+TGG 0.392264 7_2:+77420807 None:intergenic
GAGTCCTGAGCTCATTTATA+AGG 0.393196 7_2:+77420490 None:intergenic
CGATCCACTTTCAAAGGGTT+AGG 0.394976 7_2:-77424122 Msa1078480:five_prime_UTR
GAGCGGGTCTTCAGCAGATA+TGG 0.401178 7_2:-77423605 Msa1078480:CDS
TTGGATGGTCGCGATATTGA+TGG 0.402561 7_2:-77422331 Msa1078480:CDS
TGAATGCTTAATGATGCTTA+TGG 0.403520 7_2:-77420414 Msa1078480:three_prime_UTR
TGATGATGCAAGATACAATT+TGG 0.409460 7_2:-77422350 Msa1078480:CDS
GAAGATAGCCCTAAGGCTAA+TGG 0.412338 7_2:-77420624 Msa1078480:CDS
GGGCTCCTATCCTCATCCCT+GGG 0.414164 7_2:+77420570 None:intergenic
ACTGTGGCATTGATGGCCAC+TGG 0.418962 7_2:-77421341 Msa1078480:CDS
CTTATTGTGGAATTTGCAAA+AGG 0.421224 7_2:-77422301 Msa1078480:CDS
CAGCCGCAGCCCCAGGGATG+AGG 0.434071 7_2:-77420580 Msa1078480:CDS
TCGGGGTTCCCGTGATTCTC+GGG 0.450465 7_2:-77421418 Msa1078480:CDS
TTTAAATCATTCAGGTTCCT+CGG 0.452728 7_2:-77421437 Msa1078480:intron
GCTGGAGAACGTGACCTGCC+TGG 0.453809 7_2:+77421056 None:intergenic
TGCTGCGCCCATTAGCCTTA+GGG 0.454836 7_2:+77420616 None:intergenic
TTAAATCATTCAGGTTCCTC+GGG 0.454923 7_2:-77421436 Msa1078480:intron
TTGTCATCATCCTCCTCTAC+GGG 0.456642 7_2:+77420549 None:intergenic
TTAAAGCAGCGTCCAGATCC+AGG 0.456838 7_2:+77421363 None:intergenic
GAGATTGCAAAGCTGGGGAT+TGG 0.463497 7_2:-77421314 Msa1078480:CDS
AAGATAGCCCTAAGGCTAAT+GGG 0.465291 7_2:-77420623 Msa1078480:CDS
TTGGGTCGAGGTCCACCTCC+TGG 0.467496 7_2:-77421381 Msa1078480:CDS
CCACAAAAGAGCGCATCTCC+TGG 0.473439 7_2:-77420732 Msa1078480:CDS
CTGTGGCATTGATGGCCACT+GGG 0.479381 7_2:-77421340 Msa1078480:CDS
CCGTGATTCTCGGGATTCTA+GGG 0.479447 7_2:-77421409 Msa1078480:CDS
GCTGGAGAACGAGACCTGGC+TGG 0.480780 7_2:+77421038 None:intergenic
CCAGGTCTCGTTCTCCAGCC+AGG 0.481833 7_2:-77421034 Msa1078480:CDS
AAAACCTAACCCTTTGAAAG+TGG 0.491426 7_2:+77424118 None:intergenic
GTTGTCATCATCCTCCTCTA+CGG 0.498569 7_2:+77420548 None:intergenic
AGAAGCCGATCCACTTTCAA+AGG 0.501384 7_2:-77424128 Msa1078480:five_prime_UTR
TATCCTCATCCCTGGGGCTG+CGG 0.503485 7_2:+77420577 None:intergenic
TTTCCGCAGCGTTCGAGATG+TGG 0.503829 7_2:-77422587 Msa1078480:intron
CTAGGAGAACGAGACCTGGC+TGG 0.505412 7_2:+77421020 None:intergenic
GGGCTCGAGATTGCAAAGCT+GGG 0.505931 7_2:-77421320 Msa1078480:CDS
CAGCCAGGTCTCGTTCTCCT+AGG 0.514139 7_2:-77421019 Msa1078480:CDS
TTATAAATGAGCTCAGGACT+CGG 0.515566 7_2:-77420488 Msa1078480:three_prime_UTR
AACAAAACATATGAATATCC+TGG 0.516284 7_2:+77420465 None:intergenic
GTGTTTCACGTTCTCCAGGC+AGG 0.517810 7_2:-77421070 Msa1078480:CDS
CCTGGCTGGAGAACGAGACC+TGG 0.518309 7_2:+77421034 None:intergenic
GCAGGTCACGTTCTCCAGCC+AGG 0.518573 7_2:-77421052 Msa1078480:CDS
AGGGTGGTTGCAACCCAAGA+TGG 0.519504 7_2:-77420702 Msa1078480:CDS
TCACGGCTTCTGCCTCTCCT+AGG 0.520626 7_2:+77421002 None:intergenic
ACTGTAATCAGACCCATCTT+GGG 0.521356 7_2:+77420689 None:intergenic
AATGAGCTCAGGACTCGGCC+AGG 0.524548 7_2:-77420483 Msa1078480:three_prime_UTR
TGGCAATACTCGCCTCTATG+TGG 0.526514 7_2:-77423663 Msa1078480:CDS
TGATGGAAGTCGTCTTATTG+TGG 0.526867 7_2:-77422314 Msa1078480:CDS
TCGACTATACTTCCTTGACT+TGG 0.532326 7_2:+77420770 None:intergenic
CACAAAAGAGCGCATCTCCT+GGG 0.532883 7_2:-77420731 Msa1078480:CDS
GCTATCTTCATTGTCCCTTG+AGG 0.536005 7_2:+77420638 None:intergenic
AGAACAAGTGTTACCGCTGT+GGG 0.537145 7_2:-77421290 Msa1078480:CDS
CTATACTTCCTTGACTTGGA+AGG 0.537488 7_2:+77420774 None:intergenic
CCTAGAATCCCGAGAATCAC+GGG 0.537583 7_2:+77421410 None:intergenic
CTCGTTCCCGTGATCTGGAG+CGG 0.539186 7_2:-77423622 Msa1078480:CDS
TATCTTCATTGTCCCTTGAG+GGG 0.543060 7_2:+77420640 None:intergenic
TTATTGTGGAATTTGCAAAA+GGG 0.544758 7_2:-77422300 Msa1078480:CDS
GCAGCCCCAGGGATGAGGAT+AGG 0.545596 7_2:-77420575 Msa1078480:CDS
GGGCTTCGATCTCTTCTGAC+AGG 0.550887 7_2:+77420828 None:intergenic
TGAAGACCCGCTCCAGATCA+CGG 0.552161 7_2:+77423615 None:intergenic
GGCAATACTCGCCTCTATGT+GGG 0.553412 7_2:-77423662 Msa1078480:CDS
TTCTGACAGGAGATCTTGAT+CGG 0.556640 7_2:+77420841 None:intergenic
CAGCGTCCAGATCCAGGAGG+TGG 0.557824 7_2:+77421369 None:intergenic
GGGTGGTTGCAACCCAAGAT+GGG 0.557970 7_2:-77420701 Msa1078480:CDS
TCTAGGGAATATTTGGGTCG+AGG 0.558291 7_2:-77421393 Msa1078480:CDS
TTCCTTGACTTGGAAGGCGG+AGG 0.565604 7_2:+77420780 None:intergenic
CGCATCTCCTGGGAATGATA+GGG 0.566420 7_2:-77420721 Msa1078480:CDS
GGATAGGAGCCCCGTAGAGG+AGG 0.567283 7_2:-77420559 Msa1078480:CDS
ACTGACCTATAGCTGCGAGC+CGG 0.569164 7_2:+77420966 None:intergenic
CCCTAGAATCCCGAGAATCA+CGG 0.570993 7_2:+77421409 None:intergenic
AAGCCGCAGCCGCAGCCCCA+GGG 0.571588 7_2:-77420586 Msa1078480:CDS
GAAGACCCGCTCCAGATCAC+GGG 0.572455 7_2:+77423616 None:intergenic
CTAACCCTTTGAAAGTGGAT+CGG 0.574194 7_2:+77424123 None:intergenic
TATTGTGGAATTTGCAAAAG+GGG 0.575734 7_2:-77422299 Msa1078480:intron
GAAGCCGATCCACTTTCAAA+GGG 0.576229 7_2:-77424127 Msa1078480:five_prime_UTR
AATAAGGATTGGTACCTTGG+AGG 0.577956 7_2:+77424086 None:intergenic
TGTTACCGCTGTGGGGAGAG+AGG 0.579057 7_2:-77421282 Msa1078480:CDS
GAAGAGCAGAAGCCCCTCAA+GGG 0.580119 7_2:-77420652 Msa1078480:CDS
TGAAGAGCAGAAGCCCCTCA+AGG 0.584992 7_2:-77420653 Msa1078480:CDS
GTCCTCCGCCTTCCAAGTCA+AGG 0.589515 7_2:-77420782 Msa1078480:CDS
GTGATCTATCTGAAGGAACT+GGG 0.591868 7_2:+77420808 None:intergenic
TCTCCTAGGAGAACGAGACC+TGG 0.593532 7_2:+77421016 None:intergenic
GCAACCACCCTATCATTCCC+AGG 0.596323 7_2:+77420714 None:intergenic
ACAATTGTTGCAACCAACAG+AGG 0.600917 7_2:+77420351 None:intergenic
TACTTCCTTGACTTGGAAGG+CGG 0.601572 7_2:+77420777 None:intergenic
AAGACAAACGACCCACATAG+AGG 0.604217 7_2:+77423651 None:intergenic
CCGTGACAGAAGCTACAGCC+CGG 0.604984 7_2:-77420985 Msa1078480:CDS
GGCTCGAGATTGCAAAGCTG+GGG 0.605985 7_2:-77421319 Msa1078480:CDS
CAGTTCCTTCAGATAGATCA+CGG 0.612374 7_2:-77420806 Msa1078480:CDS
GATGCAAGATACAATTTGGA+TGG 0.614822 7_2:-77422346 Msa1078480:CDS
TCTGGACGCTGCTTTAACTG+TGG 0.621834 7_2:-77421357 Msa1078480:CDS
CCGGGCTGTAGCTTCTGTCA+CGG 0.626094 7_2:+77420985 None:intergenic
GGACAATGAAGATAGCCCTA+AGG 0.628195 7_2:-77420631 Msa1078480:CDS
GATATAAATAGTGAAACGCA+TGG 0.631829 7_2:-77424153 Msa1078480:five_prime_UTR
AGGTCTCGTTCTCCTAGGAG+AGG 0.635451 7_2:-77421014 Msa1078480:CDS
ATCTCCTGGGAATGATAGGG+TGG 0.637023 7_2:-77420718 Msa1078480:CDS
GATGGGTCTGATTACAGTGA+TGG 0.645059 7_2:-77420684 Msa1078480:CDS
AAGAACAAGTGTTACCGCTG+TGG 0.645882 7_2:-77421291 Msa1078480:CDS
TGAGGATAGGAGCCCCGTAG+AGG 0.657043 7_2:-77420562 Msa1078480:CDS
AGGGTAAGAACTTACAACAA+AGG 0.661425 7_2:+77422546 None:intergenic
GGGTCTTCAGCAGATATGGA+AGG 0.663027 7_2:-77423601 Msa1078480:intron
GGCTCCTATCCTCATCCCTG+GGG 0.667502 7_2:+77420571 None:intergenic
AAGTATAGTCGATCTCCTGA+AGG 0.670998 7_2:-77420759 Msa1078480:CDS
TAAATCATTCAGGTTCCTCG+GGG 0.679098 7_2:-77421435 Msa1078480:intron
CTTGCATCATCAGCATCTCG+AGG 0.683904 7_2:+77422361 None:intergenic
TGTCATCATCCTCCTCTACG+GGG 0.697101 7_2:+77420550 None:intergenic
CTTTGCAATCTCGAGCCCAG+TGG 0.704739 7_2:+77421325 None:intergenic
ATGCTTATGGTTATGAACAA+CGG 0.706115 7_2:-77420401 Msa1078480:three_prime_UTR
GAACAAGTGTTACCGCTGTG+GGG 0.707356 7_2:-77421289 Msa1078480:CDS
CCATACTTATCATCGTAGCG+AGG 0.710626 7_2:+77423683 None:intergenic
CGAGAATCACGGGAACCCCG+AGG 0.735565 7_2:+77421420 None:intergenic
TATGACCTCTCTCCCCACAG+CGG 0.773660 7_2:+77421277 None:intergenic
AAGCAGCGTCCAGATCCAGG+AGG 0.786991 7_2:+77421366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAAAATAAAAAATTAAAT+GGG + chr7_2:77420336-77420355 None:intergenic 10.0%
!! TGGAAAAATAAAAAATTAAA+TGG + chr7_2:77420337-77420356 None:intergenic 10.0%
!!! TTAATTTTTTATTTTTCCAT+CGG - chr7_2:77420338-77420357 Msa1078480:three_prime_UTR 10.0%
!! ATAAAAAATTAAATGGGAAT+AGG + chr7_2:77420330-77420349 None:intergenic 15.0%
!! AATAAAAAAGTAACAAAACA+GGG + chr7_2:77421838-77421857 None:intergenic 15.0%
!! AAATAAAAAAGTAACAAAAC+AGG + chr7_2:77421839-77421858 None:intergenic 15.0%
!! TTTCAAATATAAGCAAAAAT+TGG - chr7_2:77422293-77422312 Msa1078480:intron 15.0%
!!! TATGAATTTTGTTCAAAATT+AGG - chr7_2:77422372-77422391 Msa1078480:CDS 15.0%
!! AACAAAAATTGTTCAAATAA+AGG + chr7_2:77422411-77422430 None:intergenic 15.0%
!!! TTTTTGTTTTTATTTGATTC+CGG - chr7_2:77422423-77422442 Msa1078480:intron 15.0%
!! AAAAGCCTAAATATATATTA+TGG + chr7_2:77422503-77422522 None:intergenic 15.0%
!!! TGTTCTTTTAAATTTCTATT+GGG - chr7_2:77422573-77422592 Msa1078480:CDS 15.0%
!!! ATTTAACTTTGTAAATTTCA+AGG - chr7_2:77422627-77422646 Msa1078480:intron 15.0%
!!! TTTAACTTTGTAAATTTCAA+GGG - chr7_2:77422628-77422647 Msa1078480:intron 15.0%
!! TAGGAAAATGAAATTGAATT+GGG + chr7_2:77420311-77420330 None:intergenic 20.0%
!! ATAGGAAAATGAAATTGAAT+TGG + chr7_2:77420312-77420331 None:intergenic 20.0%
!! ATCAAATTTAAATCGAAAAC+CGG + chr7_2:77420456-77420475 None:intergenic 20.0%
!!! ATGCTCGTAATTTTTTTTTT+GGG - chr7_2:77420512-77420531 Msa1078480:exon 20.0%
!!! TTTTTTAACCAGTTTATGAA+TGG - chr7_2:77420986-77421005 Msa1078480:CDS 20.0%
!!! ATAATTTTCCATTCATAAAC+TGG + chr7_2:77420997-77421016 None:intergenic 20.0%
!! GAGACATATAACAAAAAAAA+AGG + chr7_2:77422114-77422133 None:intergenic 20.0%
!!! TCTTTTATAATTAGCTTTCA+AGG - chr7_2:77422132-77422151 Msa1078480:intron 20.0%
!!! TGCTTATATTTGAAATCAAA+AGG + chr7_2:77422288-77422307 None:intergenic 20.0%
!! TTGACCAAATTCATAAAATT+TGG + chr7_2:77422343-77422362 None:intergenic 20.0%
!! TACTGCCATAATATATATTT+AGG - chr7_2:77422495-77422514 Msa1078480:intron 20.0%
!!! CTGTTCTTTTAAATTTCTAT+TGG - chr7_2:77422572-77422591 Msa1078480:CDS 20.0%
!! TTAACTTTGTAAATTTCAAG+GGG - chr7_2:77422629-77422648 Msa1078480:intron 20.0%
!!! TCTGTTGTCTTTTATTTTTA+TGG - chr7_2:77422793-77422812 Msa1078480:intron 20.0%
!! TTTACTTATAAGCTGAAAAT+TGG - chr7_2:77423473-77423492 Msa1078480:intron 20.0%
!! TTACTTATAAGCTGAAAATT+GGG - chr7_2:77423474-77423493 Msa1078480:intron 20.0%
!! ATAAGGAAAAATACTTCTTA+AGG + chr7_2:77423852-77423871 None:intergenic 20.0%
!! ATTAAGCATTCAAAAAAAGA+TGG + chr7_2:77423934-77423953 None:intergenic 20.0%
!!! TTAAATTTTTAAACCTCTGT+TGG - chr7_2:77423992-77424011 Msa1078480:intron 20.0%
!!! ATAATAGCACTATTTTTCAT+TGG + chr7_2:77424149-77424168 None:intergenic 20.0%
!!! AATGAAAAATAGTGCTATTA+TGG - chr7_2:77424148-77424167 Msa1078480:five_prime_UTR 20.0%
! AGGAAAATGAAATTGAATTG+GGG + chr7_2:77420310-77420329 None:intergenic 25.0%
! CAAAAAAAAAATTACGAGCA+TGG + chr7_2:77420513-77420532 None:intergenic 25.0%
!!! CATGCTCGTAATTTTTTTTT+TGG - chr7_2:77420511-77420530 Msa1078480:exon 25.0%
! TGCAATCAATAATTGAATCT+GGG + chr7_2:77420629-77420648 None:intergenic 25.0%
! ATGCAATCAATAATTGAATC+TGG + chr7_2:77420630-77420649 None:intergenic 25.0%
! CCAATTTAAACAATTGTGAA+TGG + chr7_2:77420816-77420835 None:intergenic 25.0%
! CCATTCACAATTGTTTAAAT+TGG - chr7_2:77420813-77420832 Msa1078480:CDS 25.0%
! AAAAGACAAAAATTGCATAG+AGG + chr7_2:77420844-77420863 None:intergenic 25.0%
! TCATAAACTGGTTAAAAAAC+TGG + chr7_2:77420985-77421004 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr7_2:77421097-77421116 None:intergenic 25.0%
! AACTTAAATGATCTTGTTGA+AGG - chr7_2:77421505-77421524 Msa1078480:intron 25.0%
!!! AATGTTATTGCGTGTTTTTA+TGG - chr7_2:77421642-77421661 Msa1078480:intron 25.0%
! TTATTGTGGAATTTGCAAAA+GGG - chr7_2:77422056-77422075 Msa1078480:intron 25.0%
!!! AGGAGTTTTTTTGTTTTGTT+TGG - chr7_2:77422152-77422171 Msa1078480:intron 25.0%
! TATAAGCAAAAATTGGTCAA+AGG - chr7_2:77422300-77422319 Msa1078480:CDS 25.0%
! TCAAAGGAAGTTTATGAATT+TGG - chr7_2:77422316-77422335 Msa1078480:CDS 25.0%
!! TGGTCCAAATTTTATGAATT+TGG - chr7_2:77422336-77422355 Msa1078480:CDS 25.0%
! TCAAATAAAGGTGATGAATT+TGG + chr7_2:77422399-77422418 None:intergenic 25.0%
! TAACTTTGTAAATTTCAAGG+GGG - chr7_2:77422630-77422649 Msa1078480:intron 25.0%
! TTACTTTATGACAACATTGT+TGG - chr7_2:77422770-77422789 Msa1078480:intron 25.0%
!!! TCATGTTGCTATTTTTCTTT+TGG - chr7_2:77422894-77422913 Msa1078480:intron 25.0%
!!! CATGTTGCTATTTTTCTTTT+GGG - chr7_2:77422895-77422914 Msa1078480:intron 25.0%
! AAATTGAAATCATCAGTTGA+AGG + chr7_2:77423237-77423256 None:intergenic 25.0%
! AAAAATACTTCTTAAGGTGA+TGG + chr7_2:77423846-77423865 None:intergenic 25.0%
! AACAAAACATATGAATATCC+TGG + chr7_2:77423894-77423913 None:intergenic 25.0%
! TGGCTAATGTAATAAGAAAA+AGG + chr7_2:77424129-77424148 None:intergenic 25.0%
GATATAAATAGTGAAACGCA+TGG - chr7_2:77420203-77420222 Msa1078480:three_prime_UTR 30.0%
TTAAAGGGTGAATCAATTGA+AGG + chr7_2:77420387-77420406 None:intergenic 30.0%
TTGGGAATGGAATGATTAAA+GGG + chr7_2:77420402-77420421 None:intergenic 30.0%
ATTGGGAATGGAATGATTAA+AGG + chr7_2:77420403-77420422 None:intergenic 30.0%
! ATCTTCTCTTTTTCTCTTGA+TGG + chr7_2:77420567-77420586 None:intergenic 30.0%
!! GTTGTTTTCATAACCTATGT+TGG - chr7_2:77421236-77421255 Msa1078480:intron 30.0%
TTTCATAAGTTCTCCAACAT+AGG + chr7_2:77421252-77421271 None:intergenic 30.0%
TTCCCCTAACTTTAGATATA+GGG + chr7_2:77421387-77421406 None:intergenic 30.0%
TTTCCCCTAACTTTAGATAT+AGG + chr7_2:77421388-77421407 None:intergenic 30.0%
AAAGTTAGGGGAAAATATAC+AGG - chr7_2:77421394-77421413 Msa1078480:CDS 30.0%
!!! TTCTTTCCAAGCTTTGTTTT+GGG - chr7_2:77421417-77421436 Msa1078480:CDS 30.0%
AAGTTAAAAATGACACCTGT+GGG + chr7_2:77421490-77421509 None:intergenic 30.0%
TAAGTTAAAAATGACACCTG+TGG + chr7_2:77421491-77421510 None:intergenic 30.0%
! ATGATCTTGTTGAAGGTTTT+TGG - chr7_2:77421512-77421531 Msa1078480:intron 30.0%
! TGATCTTGTTGAAGGTTTTT+GGG - chr7_2:77421513-77421532 Msa1078480:intron 30.0%
!! ATTGCGTGTTTTTATGGAAT+TGG - chr7_2:77421648-77421667 Msa1078480:intron 30.0%
TTCCAGTAGTTAAGTAATGA+TGG - chr7_2:77421725-77421744 Msa1078480:intron 30.0%
AATGGTTTCCATAAACAGTA+AGG + chr7_2:77421751-77421770 None:intergenic 30.0%
AAAGTAACAAAACAGGGAAA+GGG + chr7_2:77421832-77421851 None:intergenic 30.0%
AAAAGTAACAAAACAGGGAA+AGG + chr7_2:77421833-77421852 None:intergenic 30.0%
ATTCCTGCTCAAAATATGTA+AGG + chr7_2:77421967-77421986 None:intergenic 30.0%
! TGATGATGCAAGATACAATT+TGG - chr7_2:77422006-77422025 Msa1078480:intron 30.0%
CTTATTGTGGAATTTGCAAA+AGG - chr7_2:77422055-77422074 Msa1078480:intron 30.0%
TATTGTGGAATTTGCAAAAG+GGG - chr7_2:77422057-77422076 Msa1078480:intron 30.0%
TCGTCAAATATATACATGGA+TGG + chr7_2:77422230-77422249 None:intergenic 30.0%
ACACTCGTCAAATATATACA+TGG + chr7_2:77422234-77422253 None:intergenic 30.0%
!! ATAGTATTGGCAATTTGCAA+GGG - chr7_2:77422448-77422467 Msa1078480:intron 30.0%
!! AGTTCACTATTCTTGCTTTT+TGG - chr7_2:77422543-77422562 Msa1078480:intron 30.0%
AAGTCTTCTTTCATCTTCAA+GGG + chr7_2:77422604-77422623 None:intergenic 30.0%
AAAGTCTTCTTTCATCTTCA+AGG + chr7_2:77422605-77422624 None:intergenic 30.0%
TTATGCTTTACTTTGACTGT+TGG - chr7_2:77422823-77422842 Msa1078480:intron 30.0%
CAACATGATCAGAAATACTA+GGG + chr7_2:77422882-77422901 None:intergenic 30.0%
!!! TTTTGGGCTTTAAATCATTC+AGG - chr7_2:77422911-77422930 Msa1078480:intron 30.0%
! TTTAAATCATTCAGGTTCCT+CGG - chr7_2:77422919-77422938 Msa1078480:intron 30.0%
AGAACAGTCCAAAAAAATTG+AGG - chr7_2:77423117-77423136 Msa1078480:intron 30.0%
ATTGCAACAATGCTTTCTAA+TGG - chr7_2:77423201-77423220 Msa1078480:intron 30.0%
! TTTTCCTTATAAATGAGCTC+AGG - chr7_2:77423862-77423881 Msa1078480:intron 30.0%
TGAATGCTTAATGATGCTTA+TGG - chr7_2:77423942-77423961 Msa1078480:intron 30.0%
ATGCTTATGGTTATGAACAA+CGG - chr7_2:77423955-77423974 Msa1078480:intron 30.0%
! AAAACCTAACCCTTTGAAAG+TGG + chr7_2:77420241-77420260 None:intergenic 35.0%
! CTTTCAAAGGGTTAGGTTTT+CGG - chr7_2:77420241-77420260 Msa1078480:three_prime_UTR 35.0%
AGAGAGAAGAGAATAAGGAT+TGG + chr7_2:77420284-77420303 None:intergenic 35.0%
GGAAAAGAGAGAAGAGAATA+AGG + chr7_2:77420289-77420308 None:intergenic 35.0%
ATGAAATTGGGAATTGGGAA+TGG + chr7_2:77420415-77420434 None:intergenic 35.0%
GATCGATGAAATTGGGAATT+GGG + chr7_2:77420420-77420439 None:intergenic 35.0%
CAATTCCCAATTTCATCGAT+CGG - chr7_2:77420419-77420438 Msa1078480:three_prime_UTR 35.0%
ACAAACCGATCGATGAAATT+GGG + chr7_2:77420427-77420446 None:intergenic 35.0%
TACAAACCGATCGATGAAAT+TGG + chr7_2:77420428-77420447 None:intergenic 35.0%
TCTCATTCCTAGACTATTAG+AGG - chr7_2:77420918-77420937 Msa1078480:intron 35.0%
AACCTAGCTAGATTAGTGAT+AGG - chr7_2:77421043-77421062 Msa1078480:CDS 35.0%
AACCTATCACTAATCTAGCT+AGG + chr7_2:77421048-77421067 None:intergenic 35.0%
AGCTAGATTAGTGATAGGTT+TGG - chr7_2:77421048-77421067 Msa1078480:CDS 35.0%
TTATTTGCAGCTTATAGCAC+AGG - chr7_2:77421112-77421131 Msa1078480:intron 35.0%
CTTTAGATATAGGGCCTATT+TGG + chr7_2:77421378-77421397 None:intergenic 35.0%
! TAGGCCCTATATCTAAAGTT+AGG - chr7_2:77421380-77421399 Msa1078480:CDS 35.0%
! AGGCCCTATATCTAAAGTTA+GGG - chr7_2:77421381-77421400 Msa1078480:CDS 35.0%
!!! GTTCTTTCCAAGCTTTGTTT+TGG - chr7_2:77421416-77421435 Msa1078480:CDS 35.0%
! TTTTGGGCTTGGATTTATGT+TGG - chr7_2:77421433-77421452 Msa1078480:intron 35.0%
TTATACCTCATGTTATGCGT+GGG - chr7_2:77421456-77421475 Msa1078480:intron 35.0%
!!! TTTTGGGTTTTCACTAAACC+CGG - chr7_2:77421529-77421548 Msa1078480:intron 35.0%
ATTACACCAAGATTACACCA+AGG + chr7_2:77421576-77421595 None:intergenic 35.0%
! TGGTGTAATCTTGGTGTAAT+TGG - chr7_2:77421576-77421595 Msa1078480:intron 35.0%
! TGTAATCTTGGTGTAATTGG+TGG - chr7_2:77421579-77421598 Msa1078480:intron 35.0%
AATTGGCAACAATCACAAAC+TGG - chr7_2:77421665-77421684 Msa1078480:intron 35.0%
! AATGATGGCCTTACTGTTTA+TGG - chr7_2:77421740-77421759 Msa1078480:intron 35.0%
AGGGTAAGAACTTACAACAA+AGG + chr7_2:77421813-77421832 None:intergenic 35.0%
!! GTTCCTTACATATTTTGAGC+AGG - chr7_2:77421961-77421980 Msa1078480:intron 35.0%
GATGCAAGATACAATTTGGA+TGG - chr7_2:77422010-77422029 Msa1078480:intron 35.0%
AAGGGGTAGGAATTAATTTC+CGG - chr7_2:77422074-77422093 Msa1078480:intron 35.0%
! AAAGGTGTAATAAGTACAGC+CGG + chr7_2:77422096-77422115 None:intergenic 35.0%
TTTGATTCCGGAGATAGTAT+TGG - chr7_2:77422435-77422454 Msa1078480:intron 35.0%
CAAATTGCCAATACTATCTC+CGG + chr7_2:77422445-77422464 None:intergenic 35.0%
!! GATAGTATTGGCAATTTGCA+AGG - chr7_2:77422447-77422466 Msa1078480:intron 35.0%
!! TAGTGAACTCTAAGACACTA+AGG + chr7_2:77422532-77422551 None:intergenic 35.0%
GGTTTACTAGCGCTTTATAA+TGG - chr7_2:77422651-77422670 Msa1078480:intron 35.0%
TTATGCTGCTATATAGCAAG+AGG + chr7_2:77422701-77422720 None:intergenic 35.0%
GCAACATGATCAGAAATACT+AGG + chr7_2:77422883-77422902 None:intergenic 35.0%
! TTAAATCATTCAGGTTCCTC+GGG - chr7_2:77422920-77422939 Msa1078480:intron 35.0%
CAGTCCAAAAAAATTGAGGT+AGG - chr7_2:77423121-77423140 Msa1078480:intron 35.0%
!!! ATGGCCTACCTCAATTTTTT+TGG + chr7_2:77423128-77423147 None:intergenic 35.0%
AAAAAAATTGAGGTAGGCCA+TGG - chr7_2:77423127-77423146 Msa1078480:intron 35.0%
TTATAAATGAGCTCAGGACT+CGG - chr7_2:77423868-77423887 Msa1078480:intron 35.0%
! CTAACCCTTTGAAAGTGGAT+CGG + chr7_2:77420236-77420255 None:intergenic 40.0%
! AATAAGGATTGGTACCTTGG+AGG + chr7_2:77420273-77420292 None:intergenic 40.0%
! GAGAATAAGGATTGGTACCT+TGG + chr7_2:77420276-77420295 None:intergenic 40.0%
CATGCAATTACAAGATCCGA+TGG + chr7_2:77420357-77420376 None:intergenic 40.0%
CGATCGATGAAATTGGGAAT+TGG + chr7_2:77420421-77420440 None:intergenic 40.0%
!! TCGATCGGTTTGTATTTCTC+CGG - chr7_2:77420434-77420453 Msa1078480:three_prime_UTR 40.0%
GTTCTATCACATTCCATGTC+TGG - chr7_2:77420888-77420907 Msa1078480:intron 40.0%
ATGAGATACACAACCAGACA+TGG + chr7_2:77420904-77420923 None:intergenic 40.0%
ATCCCAAACCTTGTGTTTGT+CGG - chr7_2:77420943-77420962 Msa1078480:intron 40.0%
ATCCGACAAACACAAGGTTT+GGG + chr7_2:77420948-77420967 None:intergenic 40.0%
AATCCGACAAACACAAGGTT+TGG + chr7_2:77420949-77420968 None:intergenic 40.0%
GAACAAATCCGACAAACACA+AGG + chr7_2:77420954-77420973 None:intergenic 40.0%
ATTAGTGATAGGTTTGGCCT+GGG - chr7_2:77421054-77421073 Msa1078480:CDS 40.0%
TCAACTACGCCAATCCAAAT+AGG - chr7_2:77421361-77421380 Msa1078480:CDS 40.0%
GATATAGGGCCTATTTGGAT+TGG + chr7_2:77421373-77421392 None:intergenic 40.0%
! GGCCCTATATCTAAAGTTAG+GGG - chr7_2:77421382-77421401 Msa1078480:CDS 40.0%
GTTATACCTCATGTTATGCG+TGG - chr7_2:77421455-77421474 Msa1078480:intron 40.0%
AAAATGACACCTGTGGGATA+CGG + chr7_2:77421484-77421503 None:intergenic 40.0%
! TGGTGTTTAGTTCGTCTTTG+AGG - chr7_2:77421685-77421704 Msa1078480:intron 40.0%
! GGTGTTTAGTTCGTCTTTGA+GGG - chr7_2:77421686-77421705 Msa1078480:intron 40.0%
! GTGTTTAGTTCGTCTTTGAG+GGG - chr7_2:77421687-77421706 Msa1078480:intron 40.0%
GGCCATCATTACTTAACTAC+TGG + chr7_2:77421730-77421749 None:intergenic 40.0%
AGATAATAGAAGCCGCCTTT+GGG + chr7_2:77421889-77421908 None:intergenic 40.0%
TAGATAATAGAAGCCGCCTT+TGG + chr7_2:77421890-77421909 None:intergenic 40.0%
! TGATGGAAGTCGTCTTATTG+TGG - chr7_2:77422042-77422061 Msa1078480:intron 40.0%
! CTAAAGCATCAGCATTAGAC+AGG + chr7_2:77422183-77422202 None:intergenic 40.0%
CTAGCGCTTTATAATGGCTT+TGG - chr7_2:77422657-77422676 Msa1078480:intron 40.0%
! TAAATCATTCAGGTTCCTCG+GGG - chr7_2:77422921-77422940 Msa1078480:intron 40.0%
! TCGGGATTCTAGGGAATATT+TGG - chr7_2:77422956-77422975 Msa1078480:intron 40.0%
! CGGGATTCTAGGGAATATTT+GGG - chr7_2:77422957-77422976 Msa1078480:intron 40.0%
! TGCTTTAACTGTGGCATTGA+TGG - chr7_2:77423008-77423027 Msa1078480:intron 40.0%
TTAAGATTACAGCACCAGCT+TGG + chr7_2:77423163-77423182 None:intergenic 40.0%
TTCTGACAGGAGATCTTGAT+CGG + chr7_2:77423518-77423537 None:intergenic 40.0%
GTGATCTATCTGAAGGAACT+GGG + chr7_2:77423551-77423570 None:intergenic 40.0%
CAGTTCCTTCAGATAGATCA+CGG - chr7_2:77423550-77423569 Msa1078480:intron 40.0%
!! CTATACTTCCTTGACTTGGA+AGG + chr7_2:77423585-77423604 None:intergenic 40.0%
TCGACTATACTTCCTTGACT+TGG + chr7_2:77423589-77423608 None:intergenic 40.0%
AAGTATAGTCGATCTCCTGA+AGG - chr7_2:77423597-77423616 Msa1078480:intron 40.0%
ACTGTAATCAGACCCATCTT+GGG + chr7_2:77423670-77423689 None:intergenic 40.0%
TATCTTCATTGTCCCTTGAG+GGG + chr7_2:77423719-77423738 None:intergenic 40.0%
CTATCTTCATTGTCCCTTGA+GGG + chr7_2:77423720-77423739 None:intergenic 40.0%
AAGATAGCCCTAAGGCTAAT+GGG - chr7_2:77423733-77423752 Msa1078480:intron 40.0%
GAGTCCTGAGCTCATTTATA+AGG + chr7_2:77423869-77423888 None:intergenic 40.0%
ACAATTGTTGCAACCAACAG+AGG + chr7_2:77424008-77424027 None:intergenic 40.0%
AGAAGCCGATCCACTTTCAA+AGG - chr7_2:77420228-77420247 Msa1078480:three_prime_UTR 45.0%
GAAGCCGATCCACTTTCAAA+GGG - chr7_2:77420229-77420248 Msa1078480:three_prime_UTR 45.0%
CGATCCACTTTCAAAGGGTT+AGG - chr7_2:77420234-77420253 Msa1078480:three_prime_UTR 45.0%
CCATACTTATCATCGTAGCG+AGG + chr7_2:77420676-77420695 None:intergenic 45.0%
CCTCGCTACGATGATAAGTA+TGG - chr7_2:77420673-77420692 Msa1078480:CDS 45.0%
AAGACAAACGACCCACATAG+AGG + chr7_2:77420708-77420727 None:intergenic 45.0%
GGGATCTCCTCTAATAGTCT+AGG + chr7_2:77420928-77420947 None:intergenic 45.0%
CAAAGTGACACAAGGAGACA+TGG + chr7_2:77421022-77421041 None:intergenic 45.0%
CTAGGTTGCAAAGTGACACA+AGG + chr7_2:77421030-77421049 None:intergenic 45.0%
GATTAGTGATAGGTTTGGCC+TGG - chr7_2:77421053-77421072 Msa1078480:CDS 45.0%
TTAGTGATAGGTTTGGCCTG+GGG - chr7_2:77421055-77421074 Msa1078480:CDS 45.0%
!!! TCCAAGCTTTGTTTTGGGCT+TGG - chr7_2:77421422-77421441 Msa1078480:CDS 45.0%
TCCAAGCCCAAAACAAAGCT+TGG + chr7_2:77421426-77421445 None:intergenic 45.0%
!! TCCTACCTGAGTGTTGACTT+TGG - chr7_2:77421606-77421625 Msa1078480:intron 45.0%
AATCGCCAAAGTCAACACTC+AGG + chr7_2:77421614-77421633 None:intergenic 45.0%
ATGTTCATTGCTCTGCCCAA+AGG - chr7_2:77421871-77421890 Msa1078480:intron 45.0%
GGCGGCTTCTATTATCTACA+CGG - chr7_2:77421892-77421911 Msa1078480:intron 45.0%
GCGGCTTCTATTATCTACAC+GGG - chr7_2:77421893-77421912 Msa1078480:intron 45.0%
CGGCTTCTATTATCTACACG+GGG - chr7_2:77421894-77421913 Msa1078480:intron 45.0%
GGCTTCTATTATCTACACGG+GGG - chr7_2:77421895-77421914 Msa1078480:intron 45.0%
TTGGATGGTCGCGATATTGA+TGG - chr7_2:77422025-77422044 Msa1078480:intron 45.0%
GTGGAATTTGCAAAAGGGGT+AGG - chr7_2:77422061-77422080 Msa1078480:intron 45.0%
TCTAGGGAATATTTGGGTCG+AGG - chr7_2:77422963-77422982 Msa1078480:intron 45.0%
AAGAACAAGTGTTACCGCTG+TGG - chr7_2:77423065-77423084 Msa1078480:intron 45.0%
AGAACAAGTGTTACCGCTGT+GGG - chr7_2:77423066-77423085 Msa1078480:intron 45.0%
CGTGATCTATCTGAAGGAAC+TGG + chr7_2:77423552-77423571 None:intergenic 45.0%
!! TACTTCCTTGACTTGGAAGG+CGG + chr7_2:77423582-77423601 None:intergenic 45.0%
CACTGTAATCAGACCCATCT+TGG + chr7_2:77423671-77423690 None:intergenic 45.0%
GATGGGTCTGATTACAGTGA+TGG - chr7_2:77423672-77423691 Msa1078480:CDS 45.0%
GCTATCTTCATTGTCCCTTG+AGG + chr7_2:77423721-77423740 None:intergenic 45.0%
GGACAATGAAGATAGCCCTA+AGG - chr7_2:77423725-77423744 Msa1078480:intron 45.0%
GAAGATAGCCCTAAGGCTAA+TGG - chr7_2:77423732-77423751 Msa1078480:intron 45.0%
TTGTCATCATCCTCCTCTAC+GGG + chr7_2:77423810-77423829 None:intergenic 45.0%
GTTGTCATCATCCTCCTCTA+CGG + chr7_2:77423811-77423830 None:intergenic 45.0%
! GTTTTCGGCAATCTCCTCCA+AGG - chr7_2:77420256-77420275 Msa1078480:three_prime_UTR 50.0%
TGGCAATACTCGCCTCTATG+TGG - chr7_2:77420693-77420712 Msa1078480:CDS 50.0%
GGCAATACTCGCCTCTATGT+GGG - chr7_2:77420694-77420713 Msa1078480:CDS 50.0%
GGGTCTTCAGCAGATATGGA+AGG - chr7_2:77420755-77420774 Msa1078480:CDS 50.0%
! TGGGTTTTCACTAAACCCGG+AGG - chr7_2:77421532-77421551 Msa1078480:intron 50.0%
GCCAAAGTCAACACTCAGGT+AGG + chr7_2:77421610-77421629 None:intergenic 50.0%
TATCCACATCTCGAACGCTG+CGG + chr7_2:77421775-77421794 None:intergenic 50.0%
TTCATTGCTCTGCCCAAAGG+CGG - chr7_2:77421874-77421893 Msa1078480:intron 50.0%
CACGGGGGAGTTCAATTATG+CGG - chr7_2:77421910-77421929 Msa1078480:intron 50.0%
CTTGCATCATCAGCATCTCG+AGG + chr7_2:77421998-77422017 None:intergenic 50.0%
CCTAGAATCCCGAGAATCAC+GGG + chr7_2:77422949-77422968 None:intergenic 50.0%
CCCTAGAATCCCGAGAATCA+CGG + chr7_2:77422950-77422969 None:intergenic 50.0%
CCGTGATTCTCGGGATTCTA+GGG - chr7_2:77422947-77422966 Msa1078480:intron 50.0%
TTAAAGCAGCGTCCAGATCC+AGG + chr7_2:77422996-77423015 None:intergenic 50.0%
! TCTGGACGCTGCTTTAACTG+TGG - chr7_2:77422999-77423018 Msa1078480:intron 50.0%
GAGATTGCAAAGCTGGGGAT+TGG - chr7_2:77423042-77423061 Msa1078480:intron 50.0%
GAACAAGTGTTACCGCTGTG+GGG - chr7_2:77423067-77423086 Msa1078480:intron 50.0%
ATTGAGGTAGGCCATGGTGT+TGG - chr7_2:77423133-77423152 Msa1078480:intron 50.0%
TTGAGGTAGGCCATGGTGTT+GGG - chr7_2:77423134-77423153 Msa1078480:intron 50.0%
! CGAAGTGTTTCACGTTCTCC+AGG - chr7_2:77423282-77423301 Msa1078480:intron 50.0%
GGACTCCGTGATCTATCTGA+AGG + chr7_2:77423558-77423577 None:intergenic 50.0%
!! CTCTTTTGTGGACTGCCTTC+AGG + chr7_2:77423615-77423634 None:intergenic 50.0%
! CACAAAAGAGCGCATCTCCT+GGG - chr7_2:77423625-77423644 Msa1078480:CDS 50.0%
CGCATCTCCTGGGAATGATA+GGG - chr7_2:77423635-77423654 Msa1078480:CDS 50.0%
ATCTCCTGGGAATGATAGGG+TGG - chr7_2:77423638-77423657 Msa1078480:CDS 50.0%
TGTCATCATCCTCCTCTACG+GGG + chr7_2:77423809-77423828 None:intergenic 50.0%
ACGAACTCGTTCCCGTGATC+TGG - chr7_2:77420729-77420748 Msa1078480:CDS 55.0%
TGAAGACCCGCTCCAGATCA+CGG + chr7_2:77420744-77420763 None:intergenic 55.0%
GAGCGGGTCTTCAGCAGATA+TGG - chr7_2:77420751-77420770 Msa1078480:CDS 55.0%
CCAAACAGGCCCACAGACAA+TGG + chr7_2:77421083-77421102 None:intergenic 55.0%
CCATTGTCTGTGGGCCTGTT+TGG - chr7_2:77421080-77421099 Msa1078480:CDS 55.0%
CGGTTCCCACGCATAACATG+AGG + chr7_2:77421464-77421483 None:intergenic 55.0%
TCACTAAACCCGGAGGTCTG+TGG - chr7_2:77421539-77421558 Msa1078480:intron 55.0%
TAAACCCGGAGGTCTGTGGT+GGG - chr7_2:77421543-77421562 Msa1078480:intron 55.0%
! GGGTGGCCTTGGTGTAATCT+TGG - chr7_2:77421567-77421586 Msa1078480:intron 55.0%
CATCTCGAACGCTGCGGAAA+TGG + chr7_2:77421769-77421788 None:intergenic 55.0%
TTTCCGCAGCGTTCGAGATG+TGG - chr7_2:77421769-77421788 Msa1078480:intron 55.0%
CCCGTGATTCTCGGGATTCT+AGG - chr7_2:77422946-77422965 Msa1078480:intron 55.0%
!! ACTGTGGCATTGATGGCCAC+TGG - chr7_2:77423015-77423034 Msa1078480:intron 55.0%
!! CTGTGGCATTGATGGCCACT+GGG - chr7_2:77423016-77423035 Msa1078480:intron 55.0%
CTTTGCAATCTCGAGCCCAG+TGG + chr7_2:77423034-77423053 None:intergenic 55.0%
TGGGCTCGAGATTGCAAAGC+TGG - chr7_2:77423035-77423054 Msa1078480:intron 55.0%
GGGCTCGAGATTGCAAAGCT+GGG - chr7_2:77423036-77423055 Msa1078480:intron 55.0%
GGCTCGAGATTGCAAAGCTG+GGG - chr7_2:77423037-77423056 Msa1078480:intron 55.0%
TATGACCTCTCTCCCCACAG+CGG + chr7_2:77423082-77423101 None:intergenic 55.0%
! TGAGGTAGGCCATGGTGTTG+GGG - chr7_2:77423135-77423154 Msa1078480:intron 55.0%
AGCTTGGAACCCCAACACCA+TGG + chr7_2:77423147-77423166 None:intergenic 55.0%
! ATGGTGTTGGGGTTCCAAGC+TGG - chr7_2:77423146-77423165 Msa1078480:intron 55.0%
GTGTTTCACGTTCTCCAGGC+AGG - chr7_2:77423286-77423305 Msa1078480:intron 55.0%
TCTCCTAGGAGAACGAGACC+TGG + chr7_2:77423343-77423362 None:intergenic 55.0%
AGGTCTCGTTCTCCTAGGAG+AGG - chr7_2:77423342-77423361 Msa1078480:intron 55.0%
ACTGACCTATAGCTGCGAGC+CGG + chr7_2:77423393-77423412 None:intergenic 55.0%
GACAGGAGATCTTGATCGGC+TGG + chr7_2:77423514-77423533 None:intergenic 55.0%
GGGCTTCGATCTCTTCTGAC+AGG + chr7_2:77423531-77423550 None:intergenic 55.0%
!! TTCCTTGACTTGGAAGGCGG+AGG + chr7_2:77423579-77423598 None:intergenic 55.0%
! CCAGGAGATGCGCTCTTTTG+TGG + chr7_2:77423627-77423646 None:intergenic 55.0%
! CCACAAAAGAGCGCATCTCC+TGG - chr7_2:77423624-77423643 Msa1078480:CDS 55.0%
GCGCATCTCCTGGGAATGAT+AGG - chr7_2:77423634-77423653 Msa1078480:CDS 55.0%
GCAACCACCCTATCATTCCC+AGG + chr7_2:77423645-77423664 None:intergenic 55.0%
AGGGTGGTTGCAACCCAAGA+TGG - chr7_2:77423654-77423673 Msa1078480:CDS 55.0%
GGGTGGTTGCAACCCAAGAT+GGG - chr7_2:77423655-77423674 Msa1078480:CDS 55.0%
TGAAGAGCAGAAGCCCCTCA+AGG - chr7_2:77423703-77423722 Msa1078480:exon 55.0%
GAAGAGCAGAAGCCCCTCAA+GGG - chr7_2:77423704-77423723 Msa1078480:exon 55.0%
!! TGCTGCGCCCATTAGCCTTA+GGG + chr7_2:77423743-77423762 None:intergenic 55.0%
CTCGTTCCCGTGATCTGGAG+CGG - chr7_2:77420734-77420753 Msa1078480:CDS 60.0%
! TCGTTCCCGTGATCTGGAGC+GGG - chr7_2:77420735-77420754 Msa1078480:CDS 60.0%
GAAGACCCGCTCCAGATCAC+GGG + chr7_2:77420743-77420762 None:intergenic 60.0%
!! CCTGGGGTGCCATTGTCTGT+GGG - chr7_2:77421071-77421090 Msa1078480:CDS 60.0%
CTAAACCCGGAGGTCTGTGG+TGG - chr7_2:77421542-77421561 Msa1078480:intron 60.0%
CTCGGGGTTCCCGTGATTCT+CGG - chr7_2:77422937-77422956 Msa1078480:intron 60.0%
TCGGGGTTCCCGTGATTCTC+GGG - chr7_2:77422938-77422957 Msa1078480:intron 60.0%
AAGCAGCGTCCAGATCCAGG+AGG + chr7_2:77422993-77423012 None:intergenic 60.0%
TGTTACCGCTGTGGGGAGAG+AGG - chr7_2:77423074-77423093 Msa1078480:intron 60.0%
CTAGGAGAACGAGACCTGGC+TGG + chr7_2:77423339-77423358 None:intergenic 60.0%
CAGCCAGGTCTCGTTCTCCT+AGG - chr7_2:77423337-77423356 Msa1078480:intron 60.0%
TCACGGCTTCTGCCTCTCCT+AGG + chr7_2:77423357-77423376 None:intergenic 60.0%
CCGGGCTGTAGCTTCTGTCA+CGG + chr7_2:77423374-77423393 None:intergenic 60.0%
CCGTGACAGAAGCTACAGCC+CGG - chr7_2:77423371-77423390 Msa1078480:intron 60.0%
CTGACCTATAGCTGCGAGCC+GGG + chr7_2:77423392-77423411 None:intergenic 60.0%
GTCCTCCGCCTTCCAAGTCA+AGG - chr7_2:77423574-77423593 Msa1078480:intron 60.0%
!! CTGCTGCGCCCATTAGCCTT+AGG + chr7_2:77423744-77423763 None:intergenic 60.0%
TATCCTCATCCCTGGGGCTG+CGG + chr7_2:77423782-77423801 None:intergenic 60.0%
GGCTCCTATCCTCATCCCTG+GGG + chr7_2:77423788-77423807 None:intergenic 60.0%
GGGCTCCTATCCTCATCCCT+GGG + chr7_2:77423789-77423808 None:intergenic 60.0%
TGAGGATAGGAGCCCCGTAG+AGG - chr7_2:77423794-77423813 Msa1078480:intron 60.0%
AATGAGCTCAGGACTCGGCC+AGG - chr7_2:77423873-77423892 Msa1078480:intron 60.0%
!! GCCTGGGGTGCCATTGTCTG+TGG - chr7_2:77421070-77421089 Msa1078480:CDS 65.0%
CCCACAGACAATGGCACCCC+AGG + chr7_2:77421074-77421093 None:intergenic 65.0%
GCGTGGGAACCGTATCCCAC+AGG - chr7_2:77421472-77421491 Msa1078480:intron 65.0%
ACCCTCCCACCACAGACCTC+CGG + chr7_2:77421551-77421570 None:intergenic 65.0%
CGAGAATCACGGGAACCCCG+AGG + chr7_2:77422939-77422958 None:intergenic 65.0%
TTGGGTCGAGGTCCACCTCC+TGG - chr7_2:77422975-77422994 Msa1078480:intron 65.0%
CGAGGTCCACCTCCTGGATC+TGG - chr7_2:77422981-77423000 Msa1078480:intron 65.0%
CAGCGTCCAGATCCAGGAGG+TGG + chr7_2:77422990-77423009 None:intergenic 65.0%
GCTGGAGAACGTGACCTGCC+TGG + chr7_2:77423303-77423322 None:intergenic 65.0%
GCAGGTCACGTTCTCCAGCC+AGG - chr7_2:77423304-77423323 Msa1078480:intron 65.0%
GCTGGAGAACGAGACCTGGC+TGG + chr7_2:77423321-77423340 None:intergenic 65.0%
CCTGGCTGGAGAACGAGACC+TGG + chr7_2:77423325-77423344 None:intergenic 65.0%
CCAGGTCTCGTTCTCCAGCC+AGG - chr7_2:77423322-77423341 Msa1078480:intron 65.0%
! ACAGCCCGGCTCGCAGCTAT+AGG - chr7_2:77423385-77423404 Msa1078480:intron 65.0%
GCAGCCCCAGGGATGAGGAT+AGG - chr7_2:77423781-77423800 Msa1078480:intron 65.0%
GGGGCTCCTATCCTCATCCC+TGG + chr7_2:77423790-77423809 None:intergenic 65.0%
GGATAGGAGCCCCGTAGAGG+AGG - chr7_2:77423797-77423816 Msa1078480:intron 65.0%
! ACCCGGAGGTCTGTGGTGGG+AGG - chr7_2:77421546-77421565 Msa1078480:intron 70.0%
CCCTCCCACCACAGACCTCC+GGG + chr7_2:77421550-77421569 None:intergenic 70.0%
! CCCGGAGGTCTGTGGTGGGA+GGG - chr7_2:77421547-77421566 Msa1078480:intron 70.0%
! GGAGGTCTGTGGTGGGAGGG+TGG - chr7_2:77421550-77421569 Msa1078480:intron 70.0%
! CTGTGGTGGGAGGGTGGCCT+TGG - chr7_2:77421556-77421575 Msa1078480:intron 70.0%
TGGGGCTGCGGCTGCGGCTT+CGG + chr7_2:77423770-77423789 None:intergenic 75.0%
AAGCCGCAGCCGCAGCCCCA+GGG - chr7_2:77423770-77423789 Msa1078480:intron 75.0%
CATCCCTGGGGCTGCGGCTG+CGG + chr7_2:77423776-77423795 None:intergenic 75.0%
CAGCCGCAGCCCCAGGGATG+AGG - chr7_2:77423776-77423795 Msa1078480:intron 75.0%
! GAAGCCGCAGCCGCAGCCCC+AGG - chr7_2:77423769-77423788 Msa1078480:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77420191 77424187 77420191 ID=Msa1078480;Name=Msa1078480
chr7_2 mRNA 77420191 77424187 77420191 ID=Msa1078480-mRNA-1;Parent=Msa1078480;Name=Msa1078480-mRNA-1;_AED=0.23;_eAED=0.23;_QI=103|1|1|1|0.83|0.71|7|333|307
chr7_2 exon 77420191 77420863 77420191 ID=Msa1078480-mRNA-1:exon:19007;Parent=Msa1078480-mRNA-1
chr7_2 exon 77420972 77421106 77420972 ID=Msa1078480-mRNA-1:exon:19006;Parent=Msa1078480-mRNA-1
chr7_2 exon 77421240 77421445 77421240 ID=Msa1078480-mRNA-1:exon:19005;Parent=Msa1078480-mRNA-1
chr7_2 exon 77422300 77422395 77422300 ID=Msa1078480-mRNA-1:exon:19004;Parent=Msa1078480-mRNA-1
chr7_2 exon 77422561 77422600 77422561 ID=Msa1078480-mRNA-1:exon:19003;Parent=Msa1078480-mRNA-1
chr7_2 exon 77423602 77423724 77423602 ID=Msa1078480-mRNA-1:exon:19002;Parent=Msa1078480-mRNA-1
chr7_2 exon 77424101 77424187 77424101 ID=Msa1078480-mRNA-1:exon:19001;Parent=Msa1078480-mRNA-1
chr7_2 five_prime_UTR 77424101 77424187 77424101 ID=Msa1078480-mRNA-1:five_prime_utr;Parent=Msa1078480-mRNA-1
chr7_2 five_prime_UTR 77423709 77423724 77423709 ID=Msa1078480-mRNA-1:five_prime_utr;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77423602 77423708 77423602 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77422561 77422600 77422561 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77422300 77422395 77422300 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77421240 77421445 77421240 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77420972 77421106 77420972 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 CDS 77420524 77420863 77420524 ID=Msa1078480-mRNA-1:cds;Parent=Msa1078480-mRNA-1
chr7_2 three_prime_UTR 77420191 77420523 77420191 ID=Msa1078480-mRNA-1:three_prime_utr;Parent=Msa1078480-mRNA-1
Gene Sequence

>Msa1078480

ATGCCTCGCTACGATGATAAGTATGGCAATACTCGCCTCTATGTGGGTCGTTTGTCTTCACGAACTCGTTCCCGTGATCTGGAGCGGGTCTTCAGCAGATATGGAAGCGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGAGATCCTCGAGATGCTGATGATGCAAGATACAATTTGGATGGTCGCGATATTGATGGAAGTCGTCTTATTGTGGAATTTGCAAAAGGGGTTCCTCGGGGTTCCCGTGATTCTCGGGATTCTAGGGAATATTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATCGAAAAGAACTGCAAGAACAGTCCAAAAAAATTGAGCAGACATGCACGAAGTGTTTCACGTTCTCCAGGCAGGTCACGTTCTCCAGCCAGGTCTCGTTCTCCAGCCAGGTCTCGTTCTCCTAGGAGAGGCAGAAGCCGTGACAGAAGCTACAGCCCGGCTCGCAGCTATAGCCGATCAAGATCTCCTGTCAGAAGAGATCGAAGCCCAGTTCCTTCAGATAGATCACGGAGTCCTCCGCCTTCCAAGTCAAGGAAGTATAGTCGATCTCCTGAAGGCAGTCCACAAAAGAGCGCATCTCCTGGGAATGATAGGGTGGTTGCAACCCAAGATGGGTCTGATTACAGTGATGGTGCTAGAGTGAAGAGCAGAAGCCCCTCAAGGGACAATGAAGATAGCCCTAAGGCTAATGGGCGCAGCAGAAGCCGAAGCCGCAGCCGCAGCCCCAGGGATGAGGATAGGAGCCCCGTAGAGGAGGATGATGACAACAATCGTCGCTCTCCATCACCTTAA

Protein sequence

>Msa1078480

MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPGRSRSPARSRSPARSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPVPSDRSRSPPPSKSRKYSRSPEGSPQKSASPGNDRVVATQDGSDYSDGARVKSRSPSRDNEDSPKANGRSRSRSRSRSPRDEDRSPVEEDDDNNRRSPSP*