Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1078640 | XP_024625911.1 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1078640 | sp|Q9FYB7|RSZ32_ARATH | 64.706 | 255 | 66 | 5 | 1 | 238 | 1 | 248 | 3.49e-85 | 260 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1078640 | A0A396HBT0 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0071640 | Msa1078640 | 0.819697 | 1.013414e-52 | -8.615850e-47 |
Msa0699300 | Msa1078640 | 0.815542 | 8.762720e-52 | -8.615850e-47 |
Msa0169710 | Msa1078640 | 0.850399 | 1.741188e-60 | -8.615850e-47 |
Msa0183840 | Msa1078640 | 0.817793 | 2.742418e-52 | -8.615850e-47 |
Msa0195030 | Msa1078640 | 0.835098 | 2.044679e-56 | -8.615850e-47 |
Msa0237180 | Msa1078640 | 0.824844 | 6.477718e-54 | -8.615850e-47 |
Msa0376850 | Msa1078640 | 0.828820 | 7.269887e-55 | -8.615850e-47 |
Msa0380590 | Msa1078640 | 0.804350 | 2.253695e-49 | -8.615850e-47 |
Msa1078480 | Msa1078640 | 0.995257 | 1.694014e-214 | -8.615850e-47 |
Msa1078640 | Msa1102090 | 0.831919 | 1.270271e-55 | -8.615850e-47 |
Msa1078640 | Msa1169470 | 0.929026 | 1.253124e-92 | -8.615850e-47 |
Msa0274940 | Msa1078640 | 0.832909 | 7.221970e-56 | -8.615850e-47 |
Msa0315660 | Msa1078640 | 0.833618 | 4.808425e-56 | -8.615850e-47 |
Msa0500420 | Msa1078640 | 0.807249 | 5.543305e-50 | -8.615850e-47 |
Msa0516830 | Msa1078640 | 0.827467 | 1.539595e-54 | -8.615850e-47 |
Msa0526490 | Msa1078640 | -0.812202 | 4.772673e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1078640 | MtrunA17_Chr7g0263341 | 98.371 | 307 | 3 | 1 | 1 | 307 | 1 | 305 | 0.0 | 572 |
Msa1078640 | MtrunA17_Chr1g0192221 | 51.190 | 84 | 35 | 2 | 13 | 91 | 40 | 122 | 9.18e-16 | 76.3 |
Msa1078640 | MtrunA17_Chr7g0269331 | 46.429 | 84 | 39 | 2 | 13 | 91 | 9 | 91 | 1.31e-12 | 67.0 |
Msa1078640 | MtrunA17_Chr8g0357591 | 33.621 | 116 | 61 | 4 | 13 | 120 | 245 | 352 | 2.05e-11 | 64.7 |
Msa1078640 | MtrunA17_Chr7g0272311 | 44.595 | 74 | 36 | 1 | 13 | 81 | 9 | 82 | 8.13e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1078640 | AT3G53500.2 | 64.706 | 255 | 66 | 5 | 1 | 238 | 1 | 248 | 3.55e-86 | 260 |
Msa1078640 | AT2G37340.1 | 81.457 | 151 | 22 | 1 | 1 | 151 | 1 | 145 | 6.10e-86 | 260 |
Msa1078640 | AT2G37340.5 | 78.182 | 110 | 18 | 1 | 42 | 151 | 1 | 104 | 1.38e-57 | 186 |
Msa1078640 | AT2G37340.3 | 78.182 | 110 | 18 | 1 | 42 | 151 | 1 | 104 | 1.38e-57 | 186 |
Msa1078640 | AT3G53500.1 | 75.000 | 120 | 23 | 2 | 42 | 160 | 1 | 114 | 1.88e-57 | 185 |
Msa1078640 | AT3G53500.3 | 75.000 | 120 | 23 | 2 | 42 | 160 | 1 | 114 | 1.88e-57 | 185 |
Msa1078640 | AT2G37340.2 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1078640 | AT2G37340.6 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1078640 | AT2G37340.4 | 77.451 | 102 | 17 | 1 | 50 | 151 | 20 | 115 | 1.90e-51 | 171 |
Msa1078640 | AT4G02430.1 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 1.05e-15 | 74.3 |
Msa1078640 | AT1G09140.3 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 4.03e-15 | 73.9 |
Msa1078640 | AT1G09140.1 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 4.59e-15 | 74.3 |
Msa1078640 | AT1G09140.2 | 50.649 | 77 | 33 | 1 | 10 | 81 | 6 | 82 | 5.42e-15 | 73.9 |
Msa1078640 | AT4G02430.3 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 7.25e-15 | 73.6 |
Msa1078640 | AT4G02430.4 | 50.000 | 82 | 36 | 1 | 13 | 89 | 9 | 90 | 8.07e-15 | 73.9 |
Msa1078640 | AT1G02840.1 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 4.34e-14 | 72.0 |
Msa1078640 | AT1G02840.4 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1078640 | AT1G02840.5 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1078640 | AT1G02840.3 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 7.49e-14 | 70.9 |
Msa1078640 | AT1G02840.2 | 48.780 | 82 | 37 | 1 | 13 | 89 | 9 | 90 | 9.92e-14 | 70.5 |
Msa1078640 | AT1G53720.1 | 31.933 | 119 | 68 | 2 | 13 | 123 | 245 | 358 | 3.95e-12 | 67.0 |
Msa1078640 | AT3G61860.1 | 32.479 | 234 | 124 | 8 | 13 | 216 | 4 | 233 | 9.85e-12 | 64.7 |
Find 129 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGGGATTCTAGGGAATATT+TGG | 0.121434 | 7_2:-77621744 | Msa1078640:CDS |
CTGCTGCGCCCATTAGCCTT+AGG | 0.207621 | 7_2:+77620959 | None:intergenic |
CCCGTGATTCTCGGGATTCT+AGG | 0.293289 | 7_2:-77621754 | Msa1078640:CDS |
TGGGGCTGCGGCTGCGGCTT+CGG | 0.294948 | 7_2:+77620933 | None:intergenic |
TGGCTAATGTAATAAGAAAA+AGG | 0.315290 | 7_2:+77620574 | None:intergenic |
TGCTTTAACTGTGGCATTGA+TGG | 0.325784 | 7_2:-77621692 | Msa1078640:CDS |
CTCGGGGTTCCCGTGATTCT+CGG | 0.326338 | 7_2:-77621763 | Msa1078640:CDS |
ACGAACTCGTTCCCGTGATC+TGG | 0.327875 | 7_2:-77623963 | Msa1078640:CDS |
GCGCATCTCCTGGGAATGAT+AGG | 0.340026 | 7_2:-77621066 | Msa1078640:CDS |
CATCCCTGGGGCTGCGGCTG+CGG | 0.349340 | 7_2:+77620927 | None:intergenic |
CTATCTTCATTGTCCCTTGA+GGG | 0.366692 | 7_2:+77620983 | None:intergenic |
CGGGATTCTAGGGAATATTT+GGG | 0.369880 | 7_2:-77621743 | Msa1078640:CDS |
GAAGCCGCAGCCGCAGCCCC+AGG | 0.370362 | 7_2:-77620931 | Msa1078640:CDS |
CACTGTAATCAGACCCATCT+TGG | 0.371288 | 7_2:+77621032 | None:intergenic |
TGGGCTCGAGATTGCAAAGC+TGG | 0.378836 | 7_2:-77621665 | Msa1078640:CDS |
GGGGCTCCTATCCTCATCCC+TGG | 0.383826 | 7_2:+77620913 | None:intergenic |
CCTCGCTACGATGATAAGTA+TGG | 0.384992 | 7_2:-77624019 | Msa1078640:CDS |
ACAGCCCGGCTCGCAGCTAT+AGG | 0.385941 | 7_2:-77621315 | Msa1078640:intron |
CGTGATCTATCTGAAGGAAC+TGG | 0.392264 | 7_2:+77621151 | None:intergenic |
GAGTCCTGAGCTCATTTATA+AGG | 0.393196 | 7_2:+77620834 | None:intergenic |
CGATCCACTTTCAAAGGGTT+AGG | 0.394976 | 7_2:-77624458 | Msa1078640:five_prime_UTR |
GAGCGGGTCTTCAGCAGATA+TGG | 0.401178 | 7_2:-77623941 | Msa1078640:CDS |
TTGGATGGTCGCGATATTGA+TGG | 0.402561 | 7_2:-77622667 | Msa1078640:CDS |
TGAATGCTTAATGATGCTTA+TGG | 0.403520 | 7_2:-77620758 | Msa1078640:three_prime_UTR |
TGATGATGCAAGATACAATT+TGG | 0.409460 | 7_2:-77622686 | Msa1078640:CDS |
GAAGATAGCCCTAAGGCTAA+TGG | 0.412338 | 7_2:-77620968 | Msa1078640:CDS |
GGGCTCCTATCCTCATCCCT+GGG | 0.414164 | 7_2:+77620914 | None:intergenic |
ACTGTGGCATTGATGGCCAC+TGG | 0.418962 | 7_2:-77621685 | Msa1078640:CDS |
CTTATTGTGGAATTTGCAAA+AGG | 0.421224 | 7_2:-77622637 | Msa1078640:CDS |
CAGCCGCAGCCCCAGGGATG+AGG | 0.434071 | 7_2:-77620924 | Msa1078640:CDS |
TCGGGGTTCCCGTGATTCTC+GGG | 0.450465 | 7_2:-77621762 | Msa1078640:CDS |
TTTAAATCATTCAGGTTCCT+CGG | 0.452728 | 7_2:-77621781 | Msa1078640:intron |
GCTGGAGAACGTGACCTGCC+TGG | 0.453809 | 7_2:+77621400 | None:intergenic |
TGCTGCGCCCATTAGCCTTA+GGG | 0.454836 | 7_2:+77620960 | None:intergenic |
TTAAATCATTCAGGTTCCTC+GGG | 0.454923 | 7_2:-77621780 | Msa1078640:intron |
TTGTCATCATCCTCCTCTAC+GGG | 0.456642 | 7_2:+77620893 | None:intergenic |
TTAAAGCAGCGTCCAGATCC+AGG | 0.456838 | 7_2:+77621707 | None:intergenic |
GAGATTGCAAAGCTGGGGAT+TGG | 0.463497 | 7_2:-77621658 | Msa1078640:CDS |
AAGATAGCCCTAAGGCTAAT+GGG | 0.465291 | 7_2:-77620967 | Msa1078640:CDS |
TTGGGTCGAGGTCCACCTCC+TGG | 0.467496 | 7_2:-77621725 | Msa1078640:CDS |
CCACAAAAGAGCGCATCTCC+TGG | 0.473439 | 7_2:-77621076 | Msa1078640:CDS |
CTGTGGCATTGATGGCCACT+GGG | 0.479381 | 7_2:-77621684 | Msa1078640:CDS |
CCGTGATTCTCGGGATTCTA+GGG | 0.479447 | 7_2:-77621753 | Msa1078640:CDS |
GCTGGAGAACGAGACCTGGC+TGG | 0.480780 | 7_2:+77621382 | None:intergenic |
CCAGGTCTCGTTCTCCAGCC+AGG | 0.481833 | 7_2:-77621378 | Msa1078640:CDS |
AAAACCTAACCCTTTGAAAG+TGG | 0.491426 | 7_2:+77624454 | None:intergenic |
GTTGTCATCATCCTCCTCTA+CGG | 0.498569 | 7_2:+77620892 | None:intergenic |
AGAAGCCGATCCACTTTCAA+AGG | 0.501384 | 7_2:-77624464 | Msa1078640:five_prime_UTR |
TATCCTCATCCCTGGGGCTG+CGG | 0.503485 | 7_2:+77620921 | None:intergenic |
TTTCCGCAGCGTTCGAGATG+TGG | 0.503829 | 7_2:-77622923 | Msa1078640:intron |
CTAGGAGAACGAGACCTGGC+TGG | 0.505412 | 7_2:+77621364 | None:intergenic |
GGGCTCGAGATTGCAAAGCT+GGG | 0.505931 | 7_2:-77621664 | Msa1078640:CDS |
CAGCCAGGTCTCGTTCTCCT+AGG | 0.514139 | 7_2:-77621363 | Msa1078640:CDS |
TTATAAATGAGCTCAGGACT+CGG | 0.515566 | 7_2:-77620832 | Msa1078640:three_prime_UTR |
AACAAAACATATGAATATCC+TGG | 0.516284 | 7_2:+77620809 | None:intergenic |
GTGTTTCACGTTCTCCAGGC+AGG | 0.517810 | 7_2:-77621414 | Msa1078640:CDS |
CCTGGCTGGAGAACGAGACC+TGG | 0.518309 | 7_2:+77621378 | None:intergenic |
GCAGGTCACGTTCTCCAGCC+AGG | 0.518573 | 7_2:-77621396 | Msa1078640:CDS |
AGGGTGGTTGCAACCCAAGA+TGG | 0.519504 | 7_2:-77621046 | Msa1078640:CDS |
TCACGGCTTCTGCCTCTCCT+AGG | 0.520626 | 7_2:+77621346 | None:intergenic |
ACTGTAATCAGACCCATCTT+GGG | 0.521356 | 7_2:+77621033 | None:intergenic |
AATGAGCTCAGGACTCGGCC+AGG | 0.524548 | 7_2:-77620827 | Msa1078640:three_prime_UTR |
TGGCAATACTCGCCTCTATG+TGG | 0.526514 | 7_2:-77623999 | Msa1078640:CDS |
TGATGGAAGTCGTCTTATTG+TGG | 0.526867 | 7_2:-77622650 | Msa1078640:CDS |
TCGACTATACTTCCTTGACT+TGG | 0.532326 | 7_2:+77621114 | None:intergenic |
CACAAAAGAGCGCATCTCCT+GGG | 0.532883 | 7_2:-77621075 | Msa1078640:CDS |
GCTATCTTCATTGTCCCTTG+AGG | 0.536005 | 7_2:+77620982 | None:intergenic |
AGAACAAGTGTTACCGCTGT+GGG | 0.537145 | 7_2:-77621634 | Msa1078640:CDS |
CTATACTTCCTTGACTTGGA+AGG | 0.537488 | 7_2:+77621118 | None:intergenic |
CCTAGAATCCCGAGAATCAC+GGG | 0.537583 | 7_2:+77621754 | None:intergenic |
CTCGTTCCCGTGATCTGGAG+CGG | 0.539186 | 7_2:-77623958 | Msa1078640:CDS |
TATCTTCATTGTCCCTTGAG+GGG | 0.543060 | 7_2:+77620984 | None:intergenic |
TTATTGTGGAATTTGCAAAA+GGG | 0.544758 | 7_2:-77622636 | Msa1078640:CDS |
GCAGCCCCAGGGATGAGGAT+AGG | 0.545596 | 7_2:-77620919 | Msa1078640:CDS |
GGGCTTCGATCTCTTCTGAC+AGG | 0.550887 | 7_2:+77621172 | None:intergenic |
TGAAGACCCGCTCCAGATCA+CGG | 0.552161 | 7_2:+77623951 | None:intergenic |
GGCAATACTCGCCTCTATGT+GGG | 0.553412 | 7_2:-77623998 | Msa1078640:CDS |
TTCTGACAGGAGATCTTGAT+CGG | 0.556640 | 7_2:+77621185 | None:intergenic |
CAGCGTCCAGATCCAGGAGG+TGG | 0.557824 | 7_2:+77621713 | None:intergenic |
GGGTGGTTGCAACCCAAGAT+GGG | 0.557970 | 7_2:-77621045 | Msa1078640:CDS |
TCTAGGGAATATTTGGGTCG+AGG | 0.558291 | 7_2:-77621737 | Msa1078640:CDS |
TTCCTTGACTTGGAAGGCGG+AGG | 0.565604 | 7_2:+77621124 | None:intergenic |
CGCATCTCCTGGGAATGATA+GGG | 0.566420 | 7_2:-77621065 | Msa1078640:CDS |
GGATAGGAGCCCCGTAGAGG+AGG | 0.567283 | 7_2:-77620903 | Msa1078640:CDS |
ACTGACCTATAGCTGCGAGC+CGG | 0.569164 | 7_2:+77621310 | None:intergenic |
CCCTAGAATCCCGAGAATCA+CGG | 0.570993 | 7_2:+77621753 | None:intergenic |
AAGCCGCAGCCGCAGCCCCA+GGG | 0.571588 | 7_2:-77620930 | Msa1078640:CDS |
GAAGACCCGCTCCAGATCAC+GGG | 0.572455 | 7_2:+77623952 | None:intergenic |
CTAACCCTTTGAAAGTGGAT+CGG | 0.574194 | 7_2:+77624459 | None:intergenic |
TATTGTGGAATTTGCAAAAG+GGG | 0.575734 | 7_2:-77622635 | Msa1078640:intron |
GAAGCCGATCCACTTTCAAA+GGG | 0.576229 | 7_2:-77624463 | Msa1078640:five_prime_UTR |
AATAAGGATTGGTACCTTGG+AGG | 0.577956 | 7_2:+77624422 | None:intergenic |
TGTTACCGCTGTGGGGAGAG+AGG | 0.579057 | 7_2:-77621626 | Msa1078640:CDS |
GAAGAGCAGAAGCCCCTCAA+GGG | 0.580119 | 7_2:-77620996 | Msa1078640:CDS |
TGAAGAGCAGAAGCCCCTCA+AGG | 0.584992 | 7_2:-77620997 | Msa1078640:CDS |
GTCCTCCGCCTTCCAAGTCA+AGG | 0.589515 | 7_2:-77621126 | Msa1078640:CDS |
GTGATCTATCTGAAGGAACT+GGG | 0.591868 | 7_2:+77621152 | None:intergenic |
TCTCCTAGGAGAACGAGACC+TGG | 0.593532 | 7_2:+77621360 | None:intergenic |
GCAACCACCCTATCATTCCC+AGG | 0.596323 | 7_2:+77621058 | None:intergenic |
ACAATTGTTGCAACCAACAG+AGG | 0.600917 | 7_2:+77620695 | None:intergenic |
TACTTCCTTGACTTGGAAGG+CGG | 0.601572 | 7_2:+77621121 | None:intergenic |
AAGACAAACGACCCACATAG+AGG | 0.604217 | 7_2:+77623987 | None:intergenic |
CCGTGACAGAAGCTACAGCC+CGG | 0.604984 | 7_2:-77621329 | Msa1078640:CDS |
GGCTCGAGATTGCAAAGCTG+GGG | 0.605985 | 7_2:-77621663 | Msa1078640:CDS |
CAGTTCCTTCAGATAGATCA+CGG | 0.612374 | 7_2:-77621150 | Msa1078640:CDS |
GATGCAAGATACAATTTGGA+TGG | 0.614822 | 7_2:-77622682 | Msa1078640:CDS |
TCTGGACGCTGCTTTAACTG+TGG | 0.621834 | 7_2:-77621701 | Msa1078640:CDS |
CCGGGCTGTAGCTTCTGTCA+CGG | 0.626094 | 7_2:+77621329 | None:intergenic |
GGACAATGAAGATAGCCCTA+AGG | 0.628195 | 7_2:-77620975 | Msa1078640:CDS |
GATATAAATAGTGAAACGCA+TGG | 0.631829 | 7_2:-77624489 | Msa1078640:five_prime_UTR |
AGGTCTCGTTCTCCTAGGAG+AGG | 0.635451 | 7_2:-77621358 | Msa1078640:CDS |
ATCTCCTGGGAATGATAGGG+TGG | 0.637023 | 7_2:-77621062 | Msa1078640:CDS |
GATGGGTCTGATTACAGTGA+TGG | 0.645059 | 7_2:-77621028 | Msa1078640:CDS |
AAGAACAAGTGTTACCGCTG+TGG | 0.645882 | 7_2:-77621635 | Msa1078640:CDS |
TGAGGATAGGAGCCCCGTAG+AGG | 0.657043 | 7_2:-77620906 | Msa1078640:CDS |
AGGGTAAGAACTTACAACAA+AGG | 0.661425 | 7_2:+77622882 | None:intergenic |
GGGTCTTCAGCAGATATGGA+AGG | 0.663027 | 7_2:-77623937 | Msa1078640:intron |
GGCTCCTATCCTCATCCCTG+GGG | 0.667502 | 7_2:+77620915 | None:intergenic |
AAGTATAGTCGATCTCCTGA+AGG | 0.670998 | 7_2:-77621103 | Msa1078640:CDS |
TAAATCATTCAGGTTCCTCG+GGG | 0.679098 | 7_2:-77621779 | Msa1078640:intron |
CTTGCATCATCAGCATCTCG+AGG | 0.683904 | 7_2:+77622697 | None:intergenic |
TGTCATCATCCTCCTCTACG+GGG | 0.697101 | 7_2:+77620894 | None:intergenic |
CTTTGCAATCTCGAGCCCAG+TGG | 0.704739 | 7_2:+77621669 | None:intergenic |
ATGCTTATGGTTATGAACAA+CGG | 0.706115 | 7_2:-77620745 | Msa1078640:three_prime_UTR |
GAACAAGTGTTACCGCTGTG+GGG | 0.707356 | 7_2:-77621633 | Msa1078640:CDS |
CCATACTTATCATCGTAGCG+AGG | 0.710626 | 7_2:+77624019 | None:intergenic |
CGAGAATCACGGGAACCCCG+AGG | 0.735565 | 7_2:+77621764 | None:intergenic |
TATGACCTCTCTCCCCACAG+CGG | 0.773660 | 7_2:+77621621 | None:intergenic |
AAGCAGCGTCCAGATCCAGG+AGG | 0.786991 | 7_2:+77621710 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GGAAAAATAAAAAATTAAAT+GGG | + | chr7_2:77620680-77620699 | None:intergenic | 10.0% |
!! | TGGAAAAATAAAAAATTAAA+TGG | + | chr7_2:77620681-77620700 | None:intergenic | 10.0% |
!!! | TTAATTTTTTATTTTTCCAT+CGG | - | chr7_2:77620682-77620701 | Msa1078640:three_prime_UTR | 10.0% |
!! | ATAAAAAATTAAATGGGAAT+AGG | + | chr7_2:77620674-77620693 | None:intergenic | 15.0% |
!! | AATAAAAAAGTAACAAAACA+GGG | + | chr7_2:77622182-77622201 | None:intergenic | 15.0% |
!! | AAATAAAAAAGTAACAAAAC+AGG | + | chr7_2:77622183-77622202 | None:intergenic | 15.0% |
!! | TTTCAAATATAAGCAAAAAT+TGG | - | chr7_2:77622637-77622656 | Msa1078640:CDS | 15.0% |
!!! | TATGAATTTTGTTCAAAATT+AGG | - | chr7_2:77622716-77622735 | Msa1078640:intron | 15.0% |
!! | AACAAAAATTGTTCAAATAA+AGG | + | chr7_2:77622755-77622774 | None:intergenic | 15.0% |
!!! | TTTTTGTTTTTATTTGATTC+CGG | - | chr7_2:77622767-77622786 | Msa1078640:intron | 15.0% |
!! | AAAAGCCTAAATATATATTA+TGG | + | chr7_2:77622847-77622866 | None:intergenic | 15.0% |
!!! | TGTTCTTTTAAATTTCTATT+GGG | - | chr7_2:77622909-77622928 | Msa1078640:CDS | 15.0% |
!!! | ATTTAACTTTGTAAATTTCA+AGG | - | chr7_2:77622963-77622982 | Msa1078640:intron | 15.0% |
!!! | TTTAACTTTGTAAATTTCAA+GGG | - | chr7_2:77622964-77622983 | Msa1078640:intron | 15.0% |
!! | TAGGAAAATGAAATTGAATT+GGG | + | chr7_2:77620655-77620674 | None:intergenic | 20.0% |
!! | ATAGGAAAATGAAATTGAAT+TGG | + | chr7_2:77620656-77620675 | None:intergenic | 20.0% |
!! | ATCAAATTTAAATCGAAAAC+CGG | + | chr7_2:77620800-77620819 | None:intergenic | 20.0% |
!!! | ATGCTCGTAATTTTTTTTTT+GGG | - | chr7_2:77620856-77620875 | Msa1078640:exon | 20.0% |
!!! | TTTTTTAACCAGTTTATGAA+TGG | - | chr7_2:77621330-77621349 | Msa1078640:CDS | 20.0% |
!!! | ATAATTTTCCATTCATAAAC+TGG | + | chr7_2:77621341-77621360 | None:intergenic | 20.0% |
!! | GAGACATATAACAAAAAAAA+AGG | + | chr7_2:77622458-77622477 | None:intergenic | 20.0% |
!!! | TCTTTTATAATTAGCTTTCA+AGG | - | chr7_2:77622476-77622495 | Msa1078640:intron | 20.0% |
!!! | TGCTTATATTTGAAATCAAA+AGG | + | chr7_2:77622632-77622651 | None:intergenic | 20.0% |
!! | TTGACCAAATTCATAAAATT+TGG | + | chr7_2:77622687-77622706 | None:intergenic | 20.0% |
!! | TACTGCCATAATATATATTT+AGG | - | chr7_2:77622839-77622858 | Msa1078640:intron | 20.0% |
!!! | CTGTTCTTTTAAATTTCTAT+TGG | - | chr7_2:77622908-77622927 | Msa1078640:CDS | 20.0% |
!! | TTAACTTTGTAAATTTCAAG+GGG | - | chr7_2:77622965-77622984 | Msa1078640:intron | 20.0% |
!!! | TCTGTTGTCTTTTATTTTTA+TGG | - | chr7_2:77623129-77623148 | Msa1078640:intron | 20.0% |
!! | TTTACTTATAAGCTGAAAAT+TGG | - | chr7_2:77623809-77623828 | Msa1078640:intron | 20.0% |
!! | TTACTTATAAGCTGAAAATT+GGG | - | chr7_2:77623810-77623829 | Msa1078640:intron | 20.0% |
!! | ATAAGGAAAAATACTTCTTA+AGG | + | chr7_2:77624188-77624207 | None:intergenic | 20.0% |
!! | ATTAAGCATTCAAAAAAAGA+TGG | + | chr7_2:77624270-77624289 | None:intergenic | 20.0% |
!!! | TTAAATTTTTAAACCTCTGT+TGG | - | chr7_2:77624328-77624347 | Msa1078640:intron | 20.0% |
!!! | ATAATAGCACTATTTTTCAT+TGG | + | chr7_2:77624485-77624504 | None:intergenic | 20.0% |
!!! | AATGAAAAATAGTGCTATTA+TGG | - | chr7_2:77624484-77624503 | Msa1078640:five_prime_UTR | 20.0% |
! | AGGAAAATGAAATTGAATTG+GGG | + | chr7_2:77620654-77620673 | None:intergenic | 25.0% |
! | CAAAAAAAAAATTACGAGCA+TGG | + | chr7_2:77620857-77620876 | None:intergenic | 25.0% |
!!! | CATGCTCGTAATTTTTTTTT+TGG | - | chr7_2:77620855-77620874 | Msa1078640:exon | 25.0% |
! | TGCAATCAATAATTGAATCT+GGG | + | chr7_2:77620973-77620992 | None:intergenic | 25.0% |
! | ATGCAATCAATAATTGAATC+TGG | + | chr7_2:77620974-77620993 | None:intergenic | 25.0% |
! | CCAATTTAAACAATTGTGAA+TGG | + | chr7_2:77621160-77621179 | None:intergenic | 25.0% |
! | CCATTCACAATTGTTTAAAT+TGG | - | chr7_2:77621157-77621176 | Msa1078640:CDS | 25.0% |
! | AAAAGACAAAAATTGCATAG+AGG | + | chr7_2:77621188-77621207 | None:intergenic | 25.0% |
! | TCATAAACTGGTTAAAAAAC+TGG | + | chr7_2:77621329-77621348 | None:intergenic | 25.0% |
! | AATAAGTTGTTTATCCAAAC+AGG | + | chr7_2:77621441-77621460 | None:intergenic | 25.0% |
! | AACTTAAATGATCTTGTTGA+AGG | - | chr7_2:77621849-77621868 | Msa1078640:intron | 25.0% |
!!! | AATGTTATTGCGTGTTTTTA+TGG | - | chr7_2:77621986-77622005 | Msa1078640:intron | 25.0% |
! | TTATTGTGGAATTTGCAAAA+GGG | - | chr7_2:77622400-77622419 | Msa1078640:intron | 25.0% |
!!! | AGGAGTTTTTTTGTTTTGTT+TGG | - | chr7_2:77622496-77622515 | Msa1078640:intron | 25.0% |
! | TATAAGCAAAAATTGGTCAA+AGG | - | chr7_2:77622644-77622663 | Msa1078640:CDS | 25.0% |
! | TCAAAGGAAGTTTATGAATT+TGG | - | chr7_2:77622660-77622679 | Msa1078640:CDS | 25.0% |
!! | TGGTCCAAATTTTATGAATT+TGG | - | chr7_2:77622680-77622699 | Msa1078640:CDS | 25.0% |
! | TCAAATAAAGGTGATGAATT+TGG | + | chr7_2:77622743-77622762 | None:intergenic | 25.0% |
! | TAACTTTGTAAATTTCAAGG+GGG | - | chr7_2:77622966-77622985 | Msa1078640:intron | 25.0% |
! | TTACTTTATGACAACATTGT+TGG | - | chr7_2:77623106-77623125 | Msa1078640:intron | 25.0% |
!!! | TCATGTTGCTATTTTTCTTT+TGG | - | chr7_2:77623230-77623249 | Msa1078640:intron | 25.0% |
!!! | CATGTTGCTATTTTTCTTTT+GGG | - | chr7_2:77623231-77623250 | Msa1078640:intron | 25.0% |
! | AAATTGAAATCATCAGTTGA+AGG | + | chr7_2:77623573-77623592 | None:intergenic | 25.0% |
! | AAAAATACTTCTTAAGGTGA+TGG | + | chr7_2:77624182-77624201 | None:intergenic | 25.0% |
! | AACAAAACATATGAATATCC+TGG | + | chr7_2:77624230-77624249 | None:intergenic | 25.0% |
! | TGGCTAATGTAATAAGAAAA+AGG | + | chr7_2:77624465-77624484 | None:intergenic | 25.0% |
GATATAAATAGTGAAACGCA+TGG | - | chr7_2:77620547-77620566 | Msa1078640:three_prime_UTR | 30.0% | |
TTAAAGGGTGAATCAATTGA+AGG | + | chr7_2:77620731-77620750 | None:intergenic | 30.0% | |
TTGGGAATGGAATGATTAAA+GGG | + | chr7_2:77620746-77620765 | None:intergenic | 30.0% | |
ATTGGGAATGGAATGATTAA+AGG | + | chr7_2:77620747-77620766 | None:intergenic | 30.0% | |
! | ATCTTCTCTTTTTCTCTTGA+TGG | + | chr7_2:77620911-77620930 | None:intergenic | 30.0% |
!! | GTTGTTTTCATAACCTATGT+TGG | - | chr7_2:77621580-77621599 | Msa1078640:intron | 30.0% |
TTTCATAAGTTCTCCAACAT+AGG | + | chr7_2:77621596-77621615 | None:intergenic | 30.0% | |
TTCCCCTAACTTTAGATATA+GGG | + | chr7_2:77621731-77621750 | None:intergenic | 30.0% | |
TTTCCCCTAACTTTAGATAT+AGG | + | chr7_2:77621732-77621751 | None:intergenic | 30.0% | |
AAAGTTAGGGGAAAATATAC+AGG | - | chr7_2:77621738-77621757 | Msa1078640:CDS | 30.0% | |
!!! | TTCTTTCCAAGCTTTGTTTT+GGG | - | chr7_2:77621761-77621780 | Msa1078640:CDS | 30.0% |
AAGTTAAAAATGACACCTGT+GGG | + | chr7_2:77621834-77621853 | None:intergenic | 30.0% | |
TAAGTTAAAAATGACACCTG+TGG | + | chr7_2:77621835-77621854 | None:intergenic | 30.0% | |
! | ATGATCTTGTTGAAGGTTTT+TGG | - | chr7_2:77621856-77621875 | Msa1078640:intron | 30.0% |
! | TGATCTTGTTGAAGGTTTTT+GGG | - | chr7_2:77621857-77621876 | Msa1078640:intron | 30.0% |
!! | ATTGCGTGTTTTTATGGAAT+TGG | - | chr7_2:77621992-77622011 | Msa1078640:intron | 30.0% |
TTCCAGTAGTTAAGTAATGA+TGG | - | chr7_2:77622069-77622088 | Msa1078640:intron | 30.0% | |
AATGGTTTCCATAAACAGTA+AGG | + | chr7_2:77622095-77622114 | None:intergenic | 30.0% | |
AAAGTAACAAAACAGGGAAA+GGG | + | chr7_2:77622176-77622195 | None:intergenic | 30.0% | |
AAAAGTAACAAAACAGGGAA+AGG | + | chr7_2:77622177-77622196 | None:intergenic | 30.0% | |
ATTCCTGCTCAAAATATGTA+AGG | + | chr7_2:77622311-77622330 | None:intergenic | 30.0% | |
! | TGATGATGCAAGATACAATT+TGG | - | chr7_2:77622350-77622369 | Msa1078640:intron | 30.0% |
CTTATTGTGGAATTTGCAAA+AGG | - | chr7_2:77622399-77622418 | Msa1078640:intron | 30.0% | |
TATTGTGGAATTTGCAAAAG+GGG | - | chr7_2:77622401-77622420 | Msa1078640:intron | 30.0% | |
TCGTCAAATATATACATGGA+TGG | + | chr7_2:77622574-77622593 | None:intergenic | 30.0% | |
ACACTCGTCAAATATATACA+TGG | + | chr7_2:77622578-77622597 | None:intergenic | 30.0% | |
!! | ATAGTATTGGCAATTTGCAA+GGG | - | chr7_2:77622792-77622811 | Msa1078640:intron | 30.0% |
!! | AGTTCACTATTCTTGCTTTT+TGG | - | chr7_2:77622879-77622898 | Msa1078640:intron | 30.0% |
AAGTCTTCTTTCATCTTCAA+GGG | + | chr7_2:77622940-77622959 | None:intergenic | 30.0% | |
AAAGTCTTCTTTCATCTTCA+AGG | + | chr7_2:77622941-77622960 | None:intergenic | 30.0% | |
TTATGCTTTACTTTGACTGT+TGG | - | chr7_2:77623159-77623178 | Msa1078640:intron | 30.0% | |
CAACATGATCAGAAATACTA+GGG | + | chr7_2:77623218-77623237 | None:intergenic | 30.0% | |
!!! | TTTTGGGCTTTAAATCATTC+AGG | - | chr7_2:77623247-77623266 | Msa1078640:intron | 30.0% |
! | TTTAAATCATTCAGGTTCCT+CGG | - | chr7_2:77623255-77623274 | Msa1078640:intron | 30.0% |
AGAACAGTCCAAAAAAATTG+AGG | - | chr7_2:77623453-77623472 | Msa1078640:intron | 30.0% | |
ATTGCAACAATGCTTTCTAA+TGG | - | chr7_2:77623537-77623556 | Msa1078640:intron | 30.0% | |
TTGAAAGCTGTAAATAGTTC+AGG | - | chr7_2:77623751-77623770 | Msa1078640:intron | 30.0% | |
! | TTTTCCTTATAAATGAGCTC+AGG | - | chr7_2:77624198-77624217 | Msa1078640:intron | 30.0% |
TGAATGCTTAATGATGCTTA+TGG | - | chr7_2:77624278-77624297 | Msa1078640:intron | 30.0% | |
ATGCTTATGGTTATGAACAA+CGG | - | chr7_2:77624291-77624310 | Msa1078640:intron | 30.0% | |
! | AAAACCTAACCCTTTGAAAG+TGG | + | chr7_2:77620585-77620604 | None:intergenic | 35.0% |
! | CTTTCAAAGGGTTAGGTTTT+CGG | - | chr7_2:77620585-77620604 | Msa1078640:three_prime_UTR | 35.0% |
AGAGAGAAGAGAATAAGGAT+TGG | + | chr7_2:77620628-77620647 | None:intergenic | 35.0% | |
GGAAAAGAGAGAAGAGAATA+AGG | + | chr7_2:77620633-77620652 | None:intergenic | 35.0% | |
ATGAAATTGGGAATTGGGAA+TGG | + | chr7_2:77620759-77620778 | None:intergenic | 35.0% | |
GATCGATGAAATTGGGAATT+GGG | + | chr7_2:77620764-77620783 | None:intergenic | 35.0% | |
CAATTCCCAATTTCATCGAT+CGG | - | chr7_2:77620763-77620782 | Msa1078640:three_prime_UTR | 35.0% | |
ACAAACCGATCGATGAAATT+GGG | + | chr7_2:77620771-77620790 | None:intergenic | 35.0% | |
TACAAACCGATCGATGAAAT+TGG | + | chr7_2:77620772-77620791 | None:intergenic | 35.0% | |
TCTCATTCCTAGACTATTAG+AGG | - | chr7_2:77621262-77621281 | Msa1078640:intron | 35.0% | |
AACCTAGCTAGATTAGTGAT+AGG | - | chr7_2:77621387-77621406 | Msa1078640:CDS | 35.0% | |
AACCTATCACTAATCTAGCT+AGG | + | chr7_2:77621392-77621411 | None:intergenic | 35.0% | |
AGCTAGATTAGTGATAGGTT+TGG | - | chr7_2:77621392-77621411 | Msa1078640:CDS | 35.0% | |
TTATTTGCAGCTTATAGCAC+AGG | - | chr7_2:77621456-77621475 | Msa1078640:intron | 35.0% | |
CTTTAGATATAGGGCCTATT+TGG | + | chr7_2:77621722-77621741 | None:intergenic | 35.0% | |
! | TAGGCCCTATATCTAAAGTT+AGG | - | chr7_2:77621724-77621743 | Msa1078640:CDS | 35.0% |
! | AGGCCCTATATCTAAAGTTA+GGG | - | chr7_2:77621725-77621744 | Msa1078640:CDS | 35.0% |
!!! | GTTCTTTCCAAGCTTTGTTT+TGG | - | chr7_2:77621760-77621779 | Msa1078640:CDS | 35.0% |
! | TTTTGGGCTTGGATTTATGT+TGG | - | chr7_2:77621777-77621796 | Msa1078640:intron | 35.0% |
TTATACCTCATGTTATGCGT+GGG | - | chr7_2:77621800-77621819 | Msa1078640:intron | 35.0% | |
!!! | TTTTGGGTTTTCACTAAACC+CGG | - | chr7_2:77621873-77621892 | Msa1078640:intron | 35.0% |
ATTACACCAAGATTACACCA+AGG | + | chr7_2:77621920-77621939 | None:intergenic | 35.0% | |
! | TGGTGTAATCTTGGTGTAAT+TGG | - | chr7_2:77621920-77621939 | Msa1078640:intron | 35.0% |
! | TGTAATCTTGGTGTAATTGG+TGG | - | chr7_2:77621923-77621942 | Msa1078640:intron | 35.0% |
AATTGGCAACAATCACAAAC+TGG | - | chr7_2:77622009-77622028 | Msa1078640:intron | 35.0% | |
! | AATGATGGCCTTACTGTTTA+TGG | - | chr7_2:77622084-77622103 | Msa1078640:intron | 35.0% |
AGGGTAAGAACTTACAACAA+AGG | + | chr7_2:77622157-77622176 | None:intergenic | 35.0% | |
!! | GTTCCTTACATATTTTGAGC+AGG | - | chr7_2:77622305-77622324 | Msa1078640:intron | 35.0% |
GATGCAAGATACAATTTGGA+TGG | - | chr7_2:77622354-77622373 | Msa1078640:intron | 35.0% | |
AAGGGGTAGGAATTAATTTC+CGG | - | chr7_2:77622418-77622437 | Msa1078640:intron | 35.0% | |
! | AAAGGTGTAATAAGTACAGC+CGG | + | chr7_2:77622440-77622459 | None:intergenic | 35.0% |
TTTGATTCCGGAGATAGTAT+TGG | - | chr7_2:77622779-77622798 | Msa1078640:intron | 35.0% | |
CAAATTGCCAATACTATCTC+CGG | + | chr7_2:77622789-77622808 | None:intergenic | 35.0% | |
!! | GATAGTATTGGCAATTTGCA+AGG | - | chr7_2:77622791-77622810 | Msa1078640:intron | 35.0% |
AGCAAGAATAGTGAACTCTA+AGG | + | chr7_2:77622876-77622895 | None:intergenic | 35.0% | |
GGTTTACTAGCGCTTTATAA+TGG | - | chr7_2:77622987-77623006 | Msa1078640:intron | 35.0% | |
TTATGCTGCTATATAGCAAG+AGG | + | chr7_2:77623037-77623056 | None:intergenic | 35.0% | |
GCAACATGATCAGAAATACT+AGG | + | chr7_2:77623219-77623238 | None:intergenic | 35.0% | |
! | TTAAATCATTCAGGTTCCTC+GGG | - | chr7_2:77623256-77623275 | Msa1078640:intron | 35.0% |
CAGTCCAAAAAAATTGAGGT+AGG | - | chr7_2:77623457-77623476 | Msa1078640:intron | 35.0% | |
TTATAAATGAGCTCAGGACT+CGG | - | chr7_2:77624204-77624223 | Msa1078640:intron | 35.0% | |
! | CTAACCCTTTGAAAGTGGAT+CGG | + | chr7_2:77620580-77620599 | None:intergenic | 40.0% |
! | AATAAGGATTGGTACCTTGG+AGG | + | chr7_2:77620617-77620636 | None:intergenic | 40.0% |
! | GAGAATAAGGATTGGTACCT+TGG | + | chr7_2:77620620-77620639 | None:intergenic | 40.0% |
CATGCAATTACAAGATCCGA+TGG | + | chr7_2:77620701-77620720 | None:intergenic | 40.0% | |
CGATCGATGAAATTGGGAAT+TGG | + | chr7_2:77620765-77620784 | None:intergenic | 40.0% | |
!! | TCGATCGGTTTGTATTTCTC+CGG | - | chr7_2:77620778-77620797 | Msa1078640:three_prime_UTR | 40.0% |
GTTCTATCACATTCCATGTC+TGG | - | chr7_2:77621232-77621251 | Msa1078640:intron | 40.0% | |
ATGAGATACACAACCAGACA+TGG | + | chr7_2:77621248-77621267 | None:intergenic | 40.0% | |
ATCCCAAACCTTGTGTTTGT+CGG | - | chr7_2:77621287-77621306 | Msa1078640:intron | 40.0% | |
ATCCGACAAACACAAGGTTT+GGG | + | chr7_2:77621292-77621311 | None:intergenic | 40.0% | |
AATCCGACAAACACAAGGTT+TGG | + | chr7_2:77621293-77621312 | None:intergenic | 40.0% | |
GAACAAATCCGACAAACACA+AGG | + | chr7_2:77621298-77621317 | None:intergenic | 40.0% | |
ATTAGTGATAGGTTTGGCCT+GGG | - | chr7_2:77621398-77621417 | Msa1078640:CDS | 40.0% | |
TCAACTACGCCAATCCAAAT+AGG | - | chr7_2:77621705-77621724 | Msa1078640:CDS | 40.0% | |
GATATAGGGCCTATTTGGAT+TGG | + | chr7_2:77621717-77621736 | None:intergenic | 40.0% | |
! | GGCCCTATATCTAAAGTTAG+GGG | - | chr7_2:77621726-77621745 | Msa1078640:CDS | 40.0% |
GTTATACCTCATGTTATGCG+TGG | - | chr7_2:77621799-77621818 | Msa1078640:intron | 40.0% | |
AAAATGACACCTGTGGGATA+CGG | + | chr7_2:77621828-77621847 | None:intergenic | 40.0% | |
! | TGGTGTTTAGTTCGTCTTTG+AGG | - | chr7_2:77622029-77622048 | Msa1078640:intron | 40.0% |
! | GGTGTTTAGTTCGTCTTTGA+GGG | - | chr7_2:77622030-77622049 | Msa1078640:intron | 40.0% |
! | GTGTTTAGTTCGTCTTTGAG+GGG | - | chr7_2:77622031-77622050 | Msa1078640:intron | 40.0% |
GGCCATCATTACTTAACTAC+TGG | + | chr7_2:77622074-77622093 | None:intergenic | 40.0% | |
ATGTTCATTGCTCTGCCTAA+AGG | - | chr7_2:77622215-77622234 | Msa1078640:intron | 40.0% | |
AGATAATAGAAGCCGCCTTT+AGG | + | chr7_2:77622233-77622252 | None:intergenic | 40.0% | |
! | TGATGGAAGTCGTCTTATTG+TGG | - | chr7_2:77622386-77622405 | Msa1078640:intron | 40.0% |
! | CTAAAGCATCAGCATTAGAC+AGG | + | chr7_2:77622527-77622546 | None:intergenic | 40.0% |
CTAGCGCTTTATAATGGCTT+TGG | - | chr7_2:77622993-77623012 | Msa1078640:intron | 40.0% | |
! | TAAATCATTCAGGTTCCTCG+GGG | - | chr7_2:77623257-77623276 | Msa1078640:intron | 40.0% |
! | TCGGGATTCTAGGGAATATT+TGG | - | chr7_2:77623292-77623311 | Msa1078640:intron | 40.0% |
! | CGGGATTCTAGGGAATATTT+GGG | - | chr7_2:77623293-77623312 | Msa1078640:intron | 40.0% |
! | TGCTTTAACTGTGGCATTGA+TGG | - | chr7_2:77623344-77623363 | Msa1078640:intron | 40.0% |
!!! | ACGGCCTACCTCAATTTTTT+TGG | + | chr7_2:77623464-77623483 | None:intergenic | 40.0% |
AAAAAAATTGAGGTAGGCCG+TGG | - | chr7_2:77623463-77623482 | Msa1078640:intron | 40.0% | |
TTAAGATTACAGCACCAGCT+TGG | + | chr7_2:77623499-77623518 | None:intergenic | 40.0% | |
TTCTGACAGGAGATCTTGAT+CGG | + | chr7_2:77623854-77623873 | None:intergenic | 40.0% | |
GTGATCTATCTGAAGGAACT+GGG | + | chr7_2:77623887-77623906 | None:intergenic | 40.0% | |
CAGTTCCTTCAGATAGATCA+CGG | - | chr7_2:77623886-77623905 | Msa1078640:intron | 40.0% | |
!! | CTATACTTCCTTGACTTGGA+AGG | + | chr7_2:77623921-77623940 | None:intergenic | 40.0% |
TCGACTATACTTCCTTGACT+TGG | + | chr7_2:77623925-77623944 | None:intergenic | 40.0% | |
AAGTATAGTCGATCTCCTGA+AGG | - | chr7_2:77623933-77623952 | Msa1078640:intron | 40.0% | |
ACTGTAATCAGACCCATCTT+GGG | + | chr7_2:77624006-77624025 | None:intergenic | 40.0% | |
TATCTTCATTGTCCCTTGAG+GGG | + | chr7_2:77624055-77624074 | None:intergenic | 40.0% | |
CTATCTTCATTGTCCCTTGA+GGG | + | chr7_2:77624056-77624075 | None:intergenic | 40.0% | |
AAGATAGCCCTAAGGCTAAT+GGG | - | chr7_2:77624069-77624088 | Msa1078640:intron | 40.0% | |
GAGTCCTGAGCTCATTTATA+AGG | + | chr7_2:77624205-77624224 | None:intergenic | 40.0% | |
ACAATTGTTGCAACCAACAG+AGG | + | chr7_2:77624344-77624363 | None:intergenic | 40.0% | |
AGAAGCCGATCCACTTTCAA+AGG | - | chr7_2:77620572-77620591 | Msa1078640:three_prime_UTR | 45.0% | |
GAAGCCGATCCACTTTCAAA+GGG | - | chr7_2:77620573-77620592 | Msa1078640:three_prime_UTR | 45.0% | |
CGATCCACTTTCAAAGGGTT+AGG | - | chr7_2:77620578-77620597 | Msa1078640:three_prime_UTR | 45.0% | |
CCATACTTATCATCGTAGCG+AGG | + | chr7_2:77621020-77621039 | None:intergenic | 45.0% | |
CCTCGCTACGATGATAAGTA+TGG | - | chr7_2:77621017-77621036 | Msa1078640:CDS | 45.0% | |
AAGACAAACGACCCACATAG+AGG | + | chr7_2:77621052-77621071 | None:intergenic | 45.0% | |
GGGATCTCCTCTAATAGTCT+AGG | + | chr7_2:77621272-77621291 | None:intergenic | 45.0% | |
CAAAGTGACACAAGGAGACA+TGG | + | chr7_2:77621366-77621385 | None:intergenic | 45.0% | |
CTAGGTTGCAAAGTGACACA+AGG | + | chr7_2:77621374-77621393 | None:intergenic | 45.0% | |
GATTAGTGATAGGTTTGGCC+TGG | - | chr7_2:77621397-77621416 | Msa1078640:CDS | 45.0% | |
TTAGTGATAGGTTTGGCCTG+GGG | - | chr7_2:77621399-77621418 | Msa1078640:CDS | 45.0% | |
!!! | TCCAAGCTTTGTTTTGGGCT+TGG | - | chr7_2:77621766-77621785 | Msa1078640:CDS | 45.0% |
TCCAAGCCCAAAACAAAGCT+TGG | + | chr7_2:77621770-77621789 | None:intergenic | 45.0% | |
!! | TCCTACCTGAGTGTTGACTT+TGG | - | chr7_2:77621950-77621969 | Msa1078640:intron | 45.0% |
AATCGCCAAAGTCAACACTC+AGG | + | chr7_2:77621958-77621977 | None:intergenic | 45.0% | |
TTCATTGCTCTGCCTAAAGG+CGG | - | chr7_2:77622218-77622237 | Msa1078640:intron | 45.0% | |
GGCGGCTTCTATTATCTACA+CGG | - | chr7_2:77622236-77622255 | Msa1078640:intron | 45.0% | |
GCGGCTTCTATTATCTACAC+GGG | - | chr7_2:77622237-77622256 | Msa1078640:intron | 45.0% | |
CGGCTTCTATTATCTACACG+GGG | - | chr7_2:77622238-77622257 | Msa1078640:intron | 45.0% | |
GGCTTCTATTATCTACACGG+GGG | - | chr7_2:77622239-77622258 | Msa1078640:intron | 45.0% | |
TTGGATGGTCGCGATATTGA+TGG | - | chr7_2:77622369-77622388 | Msa1078640:intron | 45.0% | |
GTGGAATTTGCAAAAGGGGT+AGG | - | chr7_2:77622405-77622424 | Msa1078640:intron | 45.0% | |
TCTAGGGAATATTTGGGTCG+AGG | - | chr7_2:77623299-77623318 | Msa1078640:intron | 45.0% | |
AAGAACAAGTGTTACCGCTG+TGG | - | chr7_2:77623401-77623420 | Msa1078640:intron | 45.0% | |
AGAACAAGTGTTACCGCTGT+GGG | - | chr7_2:77623402-77623421 | Msa1078640:intron | 45.0% | |
CGTGATCTATCTGAAGGAAC+TGG | + | chr7_2:77623888-77623907 | None:intergenic | 45.0% | |
!! | TACTTCCTTGACTTGGAAGG+CGG | + | chr7_2:77623918-77623937 | None:intergenic | 45.0% |
CACTGTAATCAGACCCATCT+TGG | + | chr7_2:77624007-77624026 | None:intergenic | 45.0% | |
GATGGGTCTGATTACAGTGA+TGG | - | chr7_2:77624008-77624027 | Msa1078640:CDS | 45.0% | |
GCTATCTTCATTGTCCCTTG+AGG | + | chr7_2:77624057-77624076 | None:intergenic | 45.0% | |
GGACAATGAAGATAGCCCTA+AGG | - | chr7_2:77624061-77624080 | Msa1078640:intron | 45.0% | |
GAAGATAGCCCTAAGGCTAA+TGG | - | chr7_2:77624068-77624087 | Msa1078640:intron | 45.0% | |
TTGTCATCATCCTCCTCTAC+GGG | + | chr7_2:77624146-77624165 | None:intergenic | 45.0% | |
GTTGTCATCATCCTCCTCTA+CGG | + | chr7_2:77624147-77624166 | None:intergenic | 45.0% | |
! | GTTTTCGGCAATCTCCTCCA+AGG | - | chr7_2:77620600-77620619 | Msa1078640:three_prime_UTR | 50.0% |
TGGCAATACTCGCCTCTATG+TGG | - | chr7_2:77621037-77621056 | Msa1078640:CDS | 50.0% | |
GGCAATACTCGCCTCTATGT+GGG | - | chr7_2:77621038-77621057 | Msa1078640:CDS | 50.0% | |
GGGTCTTCAGCAGATATGGA+AGG | - | chr7_2:77621099-77621118 | Msa1078640:CDS | 50.0% | |
! | TGGGTTTTCACTAAACCCGG+AGG | - | chr7_2:77621876-77621895 | Msa1078640:intron | 50.0% |
GCCAAAGTCAACACTCAGGT+AGG | + | chr7_2:77621954-77621973 | None:intergenic | 50.0% | |
TATCCACATCTCGAACGCTG+CGG | + | chr7_2:77622119-77622138 | None:intergenic | 50.0% | |
CACGGGGGAGTTCAATTATG+CGG | - | chr7_2:77622254-77622273 | Msa1078640:intron | 50.0% | |
CTTGCATCATCAGCATCTCG+AGG | + | chr7_2:77622342-77622361 | None:intergenic | 50.0% | |
CCTAGAATCCCGAGAATCAC+GGG | + | chr7_2:77623285-77623304 | None:intergenic | 50.0% | |
CCCTAGAATCCCGAGAATCA+CGG | + | chr7_2:77623286-77623305 | None:intergenic | 50.0% | |
CCGTGATTCTCGGGATTCTA+GGG | - | chr7_2:77623283-77623302 | Msa1078640:intron | 50.0% | |
TTAAAGCAGCGTCCAGATCC+AGG | + | chr7_2:77623332-77623351 | None:intergenic | 50.0% | |
! | TCTGGACGCTGCTTTAACTG+TGG | - | chr7_2:77623335-77623354 | Msa1078640:intron | 50.0% |
GAGATTGCAAAGCTGGGGAT+TGG | - | chr7_2:77623378-77623397 | Msa1078640:intron | 50.0% | |
GAACAAGTGTTACCGCTGTG+GGG | - | chr7_2:77623403-77623422 | Msa1078640:intron | 50.0% | |
! | CGAAGTGTTTCACGTTCTCC+AGG | - | chr7_2:77623618-77623637 | Msa1078640:intron | 50.0% |
GGACTCCGTGATCTATCTGA+AGG | + | chr7_2:77623894-77623913 | None:intergenic | 50.0% | |
!! | CTCTTTTGTGGACTGCCTTC+AGG | + | chr7_2:77623951-77623970 | None:intergenic | 50.0% |
! | CACAAAAGAGCGCATCTCCT+GGG | - | chr7_2:77623961-77623980 | Msa1078640:CDS | 50.0% |
CGCATCTCCTGGGAATGATA+GGG | - | chr7_2:77623971-77623990 | Msa1078640:CDS | 50.0% | |
ATCTCCTGGGAATGATAGGG+TGG | - | chr7_2:77623974-77623993 | Msa1078640:CDS | 50.0% | |
TGTCATCATCCTCCTCTACG+GGG | + | chr7_2:77624145-77624164 | None:intergenic | 50.0% | |
ACGAACTCGTTCCCGTGATC+TGG | - | chr7_2:77621073-77621092 | Msa1078640:CDS | 55.0% | |
TGAAGACCCGCTCCAGATCA+CGG | + | chr7_2:77621088-77621107 | None:intergenic | 55.0% | |
GAGCGGGTCTTCAGCAGATA+TGG | - | chr7_2:77621095-77621114 | Msa1078640:CDS | 55.0% | |
CCAAACAGGCCCACAGACAA+TGG | + | chr7_2:77621427-77621446 | None:intergenic | 55.0% | |
CCATTGTCTGTGGGCCTGTT+TGG | - | chr7_2:77621424-77621443 | Msa1078640:CDS | 55.0% | |
CGGTTCCCACGCATAACATG+AGG | + | chr7_2:77621808-77621827 | None:intergenic | 55.0% | |
TCACTAAACCCGGAGGTCTG+TGG | - | chr7_2:77621883-77621902 | Msa1078640:intron | 55.0% | |
TAAACCCGGAGGTCTGTGGT+GGG | - | chr7_2:77621887-77621906 | Msa1078640:intron | 55.0% | |
! | GGGTGGCCTTGGTGTAATCT+TGG | - | chr7_2:77621911-77621930 | Msa1078640:intron | 55.0% |
CATCTCGAACGCTGCGGAAA+TGG | + | chr7_2:77622113-77622132 | None:intergenic | 55.0% | |
TTTCCGCAGCGTTCGAGATG+TGG | - | chr7_2:77622113-77622132 | Msa1078640:intron | 55.0% | |
CCCGTGATTCTCGGGATTCT+AGG | - | chr7_2:77623282-77623301 | Msa1078640:intron | 55.0% | |
!! | ACTGTGGCATTGATGGCCAC+TGG | - | chr7_2:77623351-77623370 | Msa1078640:intron | 55.0% |
!! | CTGTGGCATTGATGGCCACT+GGG | - | chr7_2:77623352-77623371 | Msa1078640:intron | 55.0% |
CTTTGCAATCTCGAGCCCAG+TGG | + | chr7_2:77623370-77623389 | None:intergenic | 55.0% | |
TGGGCTCGAGATTGCAAAGC+TGG | - | chr7_2:77623371-77623390 | Msa1078640:intron | 55.0% | |
GGGCTCGAGATTGCAAAGCT+GGG | - | chr7_2:77623372-77623391 | Msa1078640:intron | 55.0% | |
GGCTCGAGATTGCAAAGCTG+GGG | - | chr7_2:77623373-77623392 | Msa1078640:intron | 55.0% | |
TATGACCTCTCTCCCCACAG+CGG | + | chr7_2:77623418-77623437 | None:intergenic | 55.0% | |
ATTGAGGTAGGCCGTGGTGT+TGG | - | chr7_2:77623469-77623488 | Msa1078640:intron | 55.0% | |
TTGAGGTAGGCCGTGGTGTT+GGG | - | chr7_2:77623470-77623489 | Msa1078640:intron | 55.0% | |
AGCTTGGAACCCCAACACCA+CGG | + | chr7_2:77623483-77623502 | None:intergenic | 55.0% | |
GTGTTTCACGTTCTCCAGGC+AGG | - | chr7_2:77623622-77623641 | Msa1078640:intron | 55.0% | |
TCTCCTAGGAGAACGAGACC+TGG | + | chr7_2:77623679-77623698 | None:intergenic | 55.0% | |
AGGTCTCGTTCTCCTAGGAG+AGG | - | chr7_2:77623678-77623697 | Msa1078640:intron | 55.0% | |
ACTGACCTATAGCTGCGAGC+CGG | + | chr7_2:77623729-77623748 | None:intergenic | 55.0% | |
GACAGGAGATCTTGATCGGC+TGG | + | chr7_2:77623850-77623869 | None:intergenic | 55.0% | |
GGGCTTCGATCTCTTCTGAC+AGG | + | chr7_2:77623867-77623886 | None:intergenic | 55.0% | |
!! | TTCCTTGACTTGGAAGGCGG+AGG | + | chr7_2:77623915-77623934 | None:intergenic | 55.0% |
! | CCAGGAGATGCGCTCTTTTG+TGG | + | chr7_2:77623963-77623982 | None:intergenic | 55.0% |
! | CCACAAAAGAGCGCATCTCC+TGG | - | chr7_2:77623960-77623979 | Msa1078640:CDS | 55.0% |
GCGCATCTCCTGGGAATGAT+AGG | - | chr7_2:77623970-77623989 | Msa1078640:CDS | 55.0% | |
GCAACCACCCTATCATTCCC+AGG | + | chr7_2:77623981-77624000 | None:intergenic | 55.0% | |
AGGGTGGTTGCAACCCAAGA+TGG | - | chr7_2:77623990-77624009 | Msa1078640:CDS | 55.0% | |
GGGTGGTTGCAACCCAAGAT+GGG | - | chr7_2:77623991-77624010 | Msa1078640:CDS | 55.0% | |
TGAAGAGCAGAAGCCCCTCA+AGG | - | chr7_2:77624039-77624058 | Msa1078640:exon | 55.0% | |
GAAGAGCAGAAGCCCCTCAA+GGG | - | chr7_2:77624040-77624059 | Msa1078640:exon | 55.0% | |
!! | TGCTGCGCCCATTAGCCTTA+GGG | + | chr7_2:77624079-77624098 | None:intergenic | 55.0% |
CTCGTTCCCGTGATCTGGAG+CGG | - | chr7_2:77621078-77621097 | Msa1078640:CDS | 60.0% | |
! | TCGTTCCCGTGATCTGGAGC+GGG | - | chr7_2:77621079-77621098 | Msa1078640:CDS | 60.0% |
GAAGACCCGCTCCAGATCAC+GGG | + | chr7_2:77621087-77621106 | None:intergenic | 60.0% | |
!! | CCTGGGGTGCCATTGTCTGT+GGG | - | chr7_2:77621415-77621434 | Msa1078640:CDS | 60.0% |
CTAAACCCGGAGGTCTGTGG+TGG | - | chr7_2:77621886-77621905 | Msa1078640:intron | 60.0% | |
CTCGGGGTTCCCGTGATTCT+CGG | - | chr7_2:77623273-77623292 | Msa1078640:intron | 60.0% | |
TCGGGGTTCCCGTGATTCTC+GGG | - | chr7_2:77623274-77623293 | Msa1078640:intron | 60.0% | |
AAGCAGCGTCCAGATCCAGG+AGG | + | chr7_2:77623329-77623348 | None:intergenic | 60.0% | |
TGTTACCGCTGTGGGGAGAG+AGG | - | chr7_2:77623410-77623429 | Msa1078640:intron | 60.0% | |
! | TGAGGTAGGCCGTGGTGTTG+GGG | - | chr7_2:77623471-77623490 | Msa1078640:intron | 60.0% |
! | GTGGTGTTGGGGTTCCAAGC+TGG | - | chr7_2:77623482-77623501 | Msa1078640:intron | 60.0% |
CTAGGAGAACGAGACCTGGC+TGG | + | chr7_2:77623675-77623694 | None:intergenic | 60.0% | |
CAGCCAGGTCTCGTTCTCCT+AGG | - | chr7_2:77623673-77623692 | Msa1078640:intron | 60.0% | |
TCACGGCTTCTGCCTCTCCT+AGG | + | chr7_2:77623693-77623712 | None:intergenic | 60.0% | |
CCGGGCTGTAGCTTCTGTCA+CGG | + | chr7_2:77623710-77623729 | None:intergenic | 60.0% | |
CCGTGACAGAAGCTACAGCC+CGG | - | chr7_2:77623707-77623726 | Msa1078640:intron | 60.0% | |
CTGACCTATAGCTGCGAGCC+GGG | + | chr7_2:77623728-77623747 | None:intergenic | 60.0% | |
GTCCTCCGCCTTCCAAGTCA+AGG | - | chr7_2:77623910-77623929 | Msa1078640:intron | 60.0% | |
!! | CTGCTGCGCCCATTAGCCTT+AGG | + | chr7_2:77624080-77624099 | None:intergenic | 60.0% |
TATCCTCATCCCTGGGGCTG+CGG | + | chr7_2:77624118-77624137 | None:intergenic | 60.0% | |
GGCTCCTATCCTCATCCCTG+GGG | + | chr7_2:77624124-77624143 | None:intergenic | 60.0% | |
GGGCTCCTATCCTCATCCCT+GGG | + | chr7_2:77624125-77624144 | None:intergenic | 60.0% | |
TGAGGATAGGAGCCCCGTAG+AGG | - | chr7_2:77624130-77624149 | Msa1078640:intron | 60.0% | |
AATGAGCTCAGGACTCGGCC+AGG | - | chr7_2:77624209-77624228 | Msa1078640:intron | 60.0% | |
!! | GCCTGGGGTGCCATTGTCTG+TGG | - | chr7_2:77621414-77621433 | Msa1078640:CDS | 65.0% |
CCCACAGACAATGGCACCCC+AGG | + | chr7_2:77621418-77621437 | None:intergenic | 65.0% | |
GCGTGGGAACCGTATCCCAC+AGG | - | chr7_2:77621816-77621835 | Msa1078640:intron | 65.0% | |
ACCCTCCCACCACAGACCTC+CGG | + | chr7_2:77621895-77621914 | None:intergenic | 65.0% | |
CGAGAATCACGGGAACCCCG+AGG | + | chr7_2:77623275-77623294 | None:intergenic | 65.0% | |
TTGGGTCGAGGTCCACCTCC+TGG | - | chr7_2:77623311-77623330 | Msa1078640:intron | 65.0% | |
CGAGGTCCACCTCCTGGATC+TGG | - | chr7_2:77623317-77623336 | Msa1078640:intron | 65.0% | |
CAGCGTCCAGATCCAGGAGG+TGG | + | chr7_2:77623326-77623345 | None:intergenic | 65.0% | |
GCTGGAGAACGTGACCTGCC+TGG | + | chr7_2:77623639-77623658 | None:intergenic | 65.0% | |
GCAGGTCACGTTCTCCAGCC+AGG | - | chr7_2:77623640-77623659 | Msa1078640:intron | 65.0% | |
GCTGGAGAACGAGACCTGGC+TGG | + | chr7_2:77623657-77623676 | None:intergenic | 65.0% | |
CCTGGCTGGAGAACGAGACC+TGG | + | chr7_2:77623661-77623680 | None:intergenic | 65.0% | |
CCAGGTCTCGTTCTCCAGCC+AGG | - | chr7_2:77623658-77623677 | Msa1078640:intron | 65.0% | |
! | ACAGCCCGGCTCGCAGCTAT+AGG | - | chr7_2:77623721-77623740 | Msa1078640:intron | 65.0% |
GCAGCCCCAGGGATGAGGAT+AGG | - | chr7_2:77624117-77624136 | Msa1078640:intron | 65.0% | |
GGGGCTCCTATCCTCATCCC+TGG | + | chr7_2:77624126-77624145 | None:intergenic | 65.0% | |
GGATAGGAGCCCCGTAGAGG+AGG | - | chr7_2:77624133-77624152 | Msa1078640:intron | 65.0% | |
! | ACCCGGAGGTCTGTGGTGGG+AGG | - | chr7_2:77621890-77621909 | Msa1078640:intron | 70.0% |
CCCTCCCACCACAGACCTCC+GGG | + | chr7_2:77621894-77621913 | None:intergenic | 70.0% | |
! | CCCGGAGGTCTGTGGTGGGA+GGG | - | chr7_2:77621891-77621910 | Msa1078640:intron | 70.0% |
! | GGAGGTCTGTGGTGGGAGGG+TGG | - | chr7_2:77621894-77621913 | Msa1078640:intron | 70.0% |
! | CTGTGGTGGGAGGGTGGCCT+TGG | - | chr7_2:77621900-77621919 | Msa1078640:intron | 70.0% |
TGGGGCTGCGGCTGCGGCTT+CGG | + | chr7_2:77624106-77624125 | None:intergenic | 75.0% | |
AAGCCGCAGCCGCAGCCCCA+GGG | - | chr7_2:77624106-77624125 | Msa1078640:intron | 75.0% | |
CATCCCTGGGGCTGCGGCTG+CGG | + | chr7_2:77624112-77624131 | None:intergenic | 75.0% | |
CAGCCGCAGCCCCAGGGATG+AGG | - | chr7_2:77624112-77624131 | Msa1078640:intron | 75.0% | |
! | GAAGCCGCAGCCGCAGCCCC+AGG | - | chr7_2:77624105-77624124 | Msa1078640:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 77620535 | 77624523 | 77620535 | ID=Msa1078640;Name=Msa1078640 |
chr7_2 | mRNA | 77620535 | 77624523 | 77620535 | ID=Msa1078640-mRNA-1;Parent=Msa1078640;Name=Msa1078640-mRNA-1;_AED=0.23;_eAED=0.23;_QI=103|1|1|1|0.83|0.71|7|333|307 |
chr7_2 | exon | 77620535 | 77621207 | 77620535 | ID=Msa1078640-mRNA-1:exon:19115;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77621316 | 77621450 | 77621316 | ID=Msa1078640-mRNA-1:exon:19114;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77621584 | 77621789 | 77621584 | ID=Msa1078640-mRNA-1:exon:19113;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77622636 | 77622731 | 77622636 | ID=Msa1078640-mRNA-1:exon:19112;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77622897 | 77622936 | 77622897 | ID=Msa1078640-mRNA-1:exon:19111;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77623938 | 77624060 | 77623938 | ID=Msa1078640-mRNA-1:exon:19110;Parent=Msa1078640-mRNA-1 |
chr7_2 | exon | 77624437 | 77624523 | 77624437 | ID=Msa1078640-mRNA-1:exon:19109;Parent=Msa1078640-mRNA-1 |
chr7_2 | five_prime_UTR | 77624437 | 77624523 | 77624437 | ID=Msa1078640-mRNA-1:five_prime_utr;Parent=Msa1078640-mRNA-1 |
chr7_2 | five_prime_UTR | 77624045 | 77624060 | 77624045 | ID=Msa1078640-mRNA-1:five_prime_utr;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77623938 | 77624044 | 77623938 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77622897 | 77622936 | 77622897 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77622636 | 77622731 | 77622636 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77621584 | 77621789 | 77621584 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77621316 | 77621450 | 77621316 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | CDS | 77620868 | 77621207 | 77620868 | ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1 |
chr7_2 | three_prime_UTR | 77620535 | 77620867 | 77620535 | ID=Msa1078640-mRNA-1:three_prime_utr;Parent=Msa1078640-mRNA-1 |
Gene Sequence |
Protein sequence |