AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078640 MtrunA17_Chr7g0263341 98.371 307 3 1 1 307 1 305 0.0 572
Msa1078640 MtrunA17_Chr1g0192221 51.190 84 35 2 13 91 40 122 9.18e-16 76.3
Msa1078640 MtrunA17_Chr7g0269331 46.429 84 39 2 13 91 9 91 1.31e-12 67.0
Msa1078640 MtrunA17_Chr8g0357591 33.621 116 61 4 13 120 245 352 2.05e-11 64.7
Msa1078640 MtrunA17_Chr7g0272311 44.595 74 36 1 13 81 9 82 8.13e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078640 AT3G53500.2 64.706 255 66 5 1 238 1 248 3.55e-86 260
Msa1078640 AT2G37340.1 81.457 151 22 1 1 151 1 145 6.10e-86 260
Msa1078640 AT2G37340.5 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1078640 AT2G37340.3 78.182 110 18 1 42 151 1 104 1.38e-57 186
Msa1078640 AT3G53500.1 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1078640 AT3G53500.3 75.000 120 23 2 42 160 1 114 1.88e-57 185
Msa1078640 AT2G37340.2 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078640 AT2G37340.6 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078640 AT2G37340.4 77.451 102 17 1 50 151 20 115 1.90e-51 171
Msa1078640 AT4G02430.1 50.000 82 36 1 13 89 9 90 1.05e-15 74.3
Msa1078640 AT1G09140.3 50.649 77 33 1 10 81 6 82 4.03e-15 73.9
Msa1078640 AT1G09140.1 50.649 77 33 1 10 81 6 82 4.59e-15 74.3
Msa1078640 AT1G09140.2 50.649 77 33 1 10 81 6 82 5.42e-15 73.9
Msa1078640 AT4G02430.3 50.000 82 36 1 13 89 9 90 7.25e-15 73.6
Msa1078640 AT4G02430.4 50.000 82 36 1 13 89 9 90 8.07e-15 73.9
Msa1078640 AT1G02840.1 48.780 82 37 1 13 89 9 90 4.34e-14 72.0
Msa1078640 AT1G02840.4 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078640 AT1G02840.5 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078640 AT1G02840.3 48.780 82 37 1 13 89 9 90 7.49e-14 70.9
Msa1078640 AT1G02840.2 48.780 82 37 1 13 89 9 90 9.92e-14 70.5
Msa1078640 AT1G53720.1 31.933 119 68 2 13 123 245 358 3.95e-12 67.0
Msa1078640 AT3G61860.1 32.479 234 124 8 13 216 4 233 9.85e-12 64.7

Find 129 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGATTCTAGGGAATATT+TGG 0.121434 7_2:-77621744 Msa1078640:CDS
CTGCTGCGCCCATTAGCCTT+AGG 0.207621 7_2:+77620959 None:intergenic
CCCGTGATTCTCGGGATTCT+AGG 0.293289 7_2:-77621754 Msa1078640:CDS
TGGGGCTGCGGCTGCGGCTT+CGG 0.294948 7_2:+77620933 None:intergenic
TGGCTAATGTAATAAGAAAA+AGG 0.315290 7_2:+77620574 None:intergenic
TGCTTTAACTGTGGCATTGA+TGG 0.325784 7_2:-77621692 Msa1078640:CDS
CTCGGGGTTCCCGTGATTCT+CGG 0.326338 7_2:-77621763 Msa1078640:CDS
ACGAACTCGTTCCCGTGATC+TGG 0.327875 7_2:-77623963 Msa1078640:CDS
GCGCATCTCCTGGGAATGAT+AGG 0.340026 7_2:-77621066 Msa1078640:CDS
CATCCCTGGGGCTGCGGCTG+CGG 0.349340 7_2:+77620927 None:intergenic
CTATCTTCATTGTCCCTTGA+GGG 0.366692 7_2:+77620983 None:intergenic
CGGGATTCTAGGGAATATTT+GGG 0.369880 7_2:-77621743 Msa1078640:CDS
GAAGCCGCAGCCGCAGCCCC+AGG 0.370362 7_2:-77620931 Msa1078640:CDS
CACTGTAATCAGACCCATCT+TGG 0.371288 7_2:+77621032 None:intergenic
TGGGCTCGAGATTGCAAAGC+TGG 0.378836 7_2:-77621665 Msa1078640:CDS
GGGGCTCCTATCCTCATCCC+TGG 0.383826 7_2:+77620913 None:intergenic
CCTCGCTACGATGATAAGTA+TGG 0.384992 7_2:-77624019 Msa1078640:CDS
ACAGCCCGGCTCGCAGCTAT+AGG 0.385941 7_2:-77621315 Msa1078640:intron
CGTGATCTATCTGAAGGAAC+TGG 0.392264 7_2:+77621151 None:intergenic
GAGTCCTGAGCTCATTTATA+AGG 0.393196 7_2:+77620834 None:intergenic
CGATCCACTTTCAAAGGGTT+AGG 0.394976 7_2:-77624458 Msa1078640:five_prime_UTR
GAGCGGGTCTTCAGCAGATA+TGG 0.401178 7_2:-77623941 Msa1078640:CDS
TTGGATGGTCGCGATATTGA+TGG 0.402561 7_2:-77622667 Msa1078640:CDS
TGAATGCTTAATGATGCTTA+TGG 0.403520 7_2:-77620758 Msa1078640:three_prime_UTR
TGATGATGCAAGATACAATT+TGG 0.409460 7_2:-77622686 Msa1078640:CDS
GAAGATAGCCCTAAGGCTAA+TGG 0.412338 7_2:-77620968 Msa1078640:CDS
GGGCTCCTATCCTCATCCCT+GGG 0.414164 7_2:+77620914 None:intergenic
ACTGTGGCATTGATGGCCAC+TGG 0.418962 7_2:-77621685 Msa1078640:CDS
CTTATTGTGGAATTTGCAAA+AGG 0.421224 7_2:-77622637 Msa1078640:CDS
CAGCCGCAGCCCCAGGGATG+AGG 0.434071 7_2:-77620924 Msa1078640:CDS
TCGGGGTTCCCGTGATTCTC+GGG 0.450465 7_2:-77621762 Msa1078640:CDS
TTTAAATCATTCAGGTTCCT+CGG 0.452728 7_2:-77621781 Msa1078640:intron
GCTGGAGAACGTGACCTGCC+TGG 0.453809 7_2:+77621400 None:intergenic
TGCTGCGCCCATTAGCCTTA+GGG 0.454836 7_2:+77620960 None:intergenic
TTAAATCATTCAGGTTCCTC+GGG 0.454923 7_2:-77621780 Msa1078640:intron
TTGTCATCATCCTCCTCTAC+GGG 0.456642 7_2:+77620893 None:intergenic
TTAAAGCAGCGTCCAGATCC+AGG 0.456838 7_2:+77621707 None:intergenic
GAGATTGCAAAGCTGGGGAT+TGG 0.463497 7_2:-77621658 Msa1078640:CDS
AAGATAGCCCTAAGGCTAAT+GGG 0.465291 7_2:-77620967 Msa1078640:CDS
TTGGGTCGAGGTCCACCTCC+TGG 0.467496 7_2:-77621725 Msa1078640:CDS
CCACAAAAGAGCGCATCTCC+TGG 0.473439 7_2:-77621076 Msa1078640:CDS
CTGTGGCATTGATGGCCACT+GGG 0.479381 7_2:-77621684 Msa1078640:CDS
CCGTGATTCTCGGGATTCTA+GGG 0.479447 7_2:-77621753 Msa1078640:CDS
GCTGGAGAACGAGACCTGGC+TGG 0.480780 7_2:+77621382 None:intergenic
CCAGGTCTCGTTCTCCAGCC+AGG 0.481833 7_2:-77621378 Msa1078640:CDS
AAAACCTAACCCTTTGAAAG+TGG 0.491426 7_2:+77624454 None:intergenic
GTTGTCATCATCCTCCTCTA+CGG 0.498569 7_2:+77620892 None:intergenic
AGAAGCCGATCCACTTTCAA+AGG 0.501384 7_2:-77624464 Msa1078640:five_prime_UTR
TATCCTCATCCCTGGGGCTG+CGG 0.503485 7_2:+77620921 None:intergenic
TTTCCGCAGCGTTCGAGATG+TGG 0.503829 7_2:-77622923 Msa1078640:intron
CTAGGAGAACGAGACCTGGC+TGG 0.505412 7_2:+77621364 None:intergenic
GGGCTCGAGATTGCAAAGCT+GGG 0.505931 7_2:-77621664 Msa1078640:CDS
CAGCCAGGTCTCGTTCTCCT+AGG 0.514139 7_2:-77621363 Msa1078640:CDS
TTATAAATGAGCTCAGGACT+CGG 0.515566 7_2:-77620832 Msa1078640:three_prime_UTR
AACAAAACATATGAATATCC+TGG 0.516284 7_2:+77620809 None:intergenic
GTGTTTCACGTTCTCCAGGC+AGG 0.517810 7_2:-77621414 Msa1078640:CDS
CCTGGCTGGAGAACGAGACC+TGG 0.518309 7_2:+77621378 None:intergenic
GCAGGTCACGTTCTCCAGCC+AGG 0.518573 7_2:-77621396 Msa1078640:CDS
AGGGTGGTTGCAACCCAAGA+TGG 0.519504 7_2:-77621046 Msa1078640:CDS
TCACGGCTTCTGCCTCTCCT+AGG 0.520626 7_2:+77621346 None:intergenic
ACTGTAATCAGACCCATCTT+GGG 0.521356 7_2:+77621033 None:intergenic
AATGAGCTCAGGACTCGGCC+AGG 0.524548 7_2:-77620827 Msa1078640:three_prime_UTR
TGGCAATACTCGCCTCTATG+TGG 0.526514 7_2:-77623999 Msa1078640:CDS
TGATGGAAGTCGTCTTATTG+TGG 0.526867 7_2:-77622650 Msa1078640:CDS
TCGACTATACTTCCTTGACT+TGG 0.532326 7_2:+77621114 None:intergenic
CACAAAAGAGCGCATCTCCT+GGG 0.532883 7_2:-77621075 Msa1078640:CDS
GCTATCTTCATTGTCCCTTG+AGG 0.536005 7_2:+77620982 None:intergenic
AGAACAAGTGTTACCGCTGT+GGG 0.537145 7_2:-77621634 Msa1078640:CDS
CTATACTTCCTTGACTTGGA+AGG 0.537488 7_2:+77621118 None:intergenic
CCTAGAATCCCGAGAATCAC+GGG 0.537583 7_2:+77621754 None:intergenic
CTCGTTCCCGTGATCTGGAG+CGG 0.539186 7_2:-77623958 Msa1078640:CDS
TATCTTCATTGTCCCTTGAG+GGG 0.543060 7_2:+77620984 None:intergenic
TTATTGTGGAATTTGCAAAA+GGG 0.544758 7_2:-77622636 Msa1078640:CDS
GCAGCCCCAGGGATGAGGAT+AGG 0.545596 7_2:-77620919 Msa1078640:CDS
GGGCTTCGATCTCTTCTGAC+AGG 0.550887 7_2:+77621172 None:intergenic
TGAAGACCCGCTCCAGATCA+CGG 0.552161 7_2:+77623951 None:intergenic
GGCAATACTCGCCTCTATGT+GGG 0.553412 7_2:-77623998 Msa1078640:CDS
TTCTGACAGGAGATCTTGAT+CGG 0.556640 7_2:+77621185 None:intergenic
CAGCGTCCAGATCCAGGAGG+TGG 0.557824 7_2:+77621713 None:intergenic
GGGTGGTTGCAACCCAAGAT+GGG 0.557970 7_2:-77621045 Msa1078640:CDS
TCTAGGGAATATTTGGGTCG+AGG 0.558291 7_2:-77621737 Msa1078640:CDS
TTCCTTGACTTGGAAGGCGG+AGG 0.565604 7_2:+77621124 None:intergenic
CGCATCTCCTGGGAATGATA+GGG 0.566420 7_2:-77621065 Msa1078640:CDS
GGATAGGAGCCCCGTAGAGG+AGG 0.567283 7_2:-77620903 Msa1078640:CDS
ACTGACCTATAGCTGCGAGC+CGG 0.569164 7_2:+77621310 None:intergenic
CCCTAGAATCCCGAGAATCA+CGG 0.570993 7_2:+77621753 None:intergenic
AAGCCGCAGCCGCAGCCCCA+GGG 0.571588 7_2:-77620930 Msa1078640:CDS
GAAGACCCGCTCCAGATCAC+GGG 0.572455 7_2:+77623952 None:intergenic
CTAACCCTTTGAAAGTGGAT+CGG 0.574194 7_2:+77624459 None:intergenic
TATTGTGGAATTTGCAAAAG+GGG 0.575734 7_2:-77622635 Msa1078640:intron
GAAGCCGATCCACTTTCAAA+GGG 0.576229 7_2:-77624463 Msa1078640:five_prime_UTR
AATAAGGATTGGTACCTTGG+AGG 0.577956 7_2:+77624422 None:intergenic
TGTTACCGCTGTGGGGAGAG+AGG 0.579057 7_2:-77621626 Msa1078640:CDS
GAAGAGCAGAAGCCCCTCAA+GGG 0.580119 7_2:-77620996 Msa1078640:CDS
TGAAGAGCAGAAGCCCCTCA+AGG 0.584992 7_2:-77620997 Msa1078640:CDS
GTCCTCCGCCTTCCAAGTCA+AGG 0.589515 7_2:-77621126 Msa1078640:CDS
GTGATCTATCTGAAGGAACT+GGG 0.591868 7_2:+77621152 None:intergenic
TCTCCTAGGAGAACGAGACC+TGG 0.593532 7_2:+77621360 None:intergenic
GCAACCACCCTATCATTCCC+AGG 0.596323 7_2:+77621058 None:intergenic
ACAATTGTTGCAACCAACAG+AGG 0.600917 7_2:+77620695 None:intergenic
TACTTCCTTGACTTGGAAGG+CGG 0.601572 7_2:+77621121 None:intergenic
AAGACAAACGACCCACATAG+AGG 0.604217 7_2:+77623987 None:intergenic
CCGTGACAGAAGCTACAGCC+CGG 0.604984 7_2:-77621329 Msa1078640:CDS
GGCTCGAGATTGCAAAGCTG+GGG 0.605985 7_2:-77621663 Msa1078640:CDS
CAGTTCCTTCAGATAGATCA+CGG 0.612374 7_2:-77621150 Msa1078640:CDS
GATGCAAGATACAATTTGGA+TGG 0.614822 7_2:-77622682 Msa1078640:CDS
TCTGGACGCTGCTTTAACTG+TGG 0.621834 7_2:-77621701 Msa1078640:CDS
CCGGGCTGTAGCTTCTGTCA+CGG 0.626094 7_2:+77621329 None:intergenic
GGACAATGAAGATAGCCCTA+AGG 0.628195 7_2:-77620975 Msa1078640:CDS
GATATAAATAGTGAAACGCA+TGG 0.631829 7_2:-77624489 Msa1078640:five_prime_UTR
AGGTCTCGTTCTCCTAGGAG+AGG 0.635451 7_2:-77621358 Msa1078640:CDS
ATCTCCTGGGAATGATAGGG+TGG 0.637023 7_2:-77621062 Msa1078640:CDS
GATGGGTCTGATTACAGTGA+TGG 0.645059 7_2:-77621028 Msa1078640:CDS
AAGAACAAGTGTTACCGCTG+TGG 0.645882 7_2:-77621635 Msa1078640:CDS
TGAGGATAGGAGCCCCGTAG+AGG 0.657043 7_2:-77620906 Msa1078640:CDS
AGGGTAAGAACTTACAACAA+AGG 0.661425 7_2:+77622882 None:intergenic
GGGTCTTCAGCAGATATGGA+AGG 0.663027 7_2:-77623937 Msa1078640:intron
GGCTCCTATCCTCATCCCTG+GGG 0.667502 7_2:+77620915 None:intergenic
AAGTATAGTCGATCTCCTGA+AGG 0.670998 7_2:-77621103 Msa1078640:CDS
TAAATCATTCAGGTTCCTCG+GGG 0.679098 7_2:-77621779 Msa1078640:intron
CTTGCATCATCAGCATCTCG+AGG 0.683904 7_2:+77622697 None:intergenic
TGTCATCATCCTCCTCTACG+GGG 0.697101 7_2:+77620894 None:intergenic
CTTTGCAATCTCGAGCCCAG+TGG 0.704739 7_2:+77621669 None:intergenic
ATGCTTATGGTTATGAACAA+CGG 0.706115 7_2:-77620745 Msa1078640:three_prime_UTR
GAACAAGTGTTACCGCTGTG+GGG 0.707356 7_2:-77621633 Msa1078640:CDS
CCATACTTATCATCGTAGCG+AGG 0.710626 7_2:+77624019 None:intergenic
CGAGAATCACGGGAACCCCG+AGG 0.735565 7_2:+77621764 None:intergenic
TATGACCTCTCTCCCCACAG+CGG 0.773660 7_2:+77621621 None:intergenic
AAGCAGCGTCCAGATCCAGG+AGG 0.786991 7_2:+77621710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAAAATAAAAAATTAAAT+GGG + chr7_2:77620680-77620699 None:intergenic 10.0%
!! TGGAAAAATAAAAAATTAAA+TGG + chr7_2:77620681-77620700 None:intergenic 10.0%
!!! TTAATTTTTTATTTTTCCAT+CGG - chr7_2:77620682-77620701 Msa1078640:three_prime_UTR 10.0%
!! ATAAAAAATTAAATGGGAAT+AGG + chr7_2:77620674-77620693 None:intergenic 15.0%
!! AATAAAAAAGTAACAAAACA+GGG + chr7_2:77622182-77622201 None:intergenic 15.0%
!! AAATAAAAAAGTAACAAAAC+AGG + chr7_2:77622183-77622202 None:intergenic 15.0%
!! TTTCAAATATAAGCAAAAAT+TGG - chr7_2:77622637-77622656 Msa1078640:CDS 15.0%
!!! TATGAATTTTGTTCAAAATT+AGG - chr7_2:77622716-77622735 Msa1078640:intron 15.0%
!! AACAAAAATTGTTCAAATAA+AGG + chr7_2:77622755-77622774 None:intergenic 15.0%
!!! TTTTTGTTTTTATTTGATTC+CGG - chr7_2:77622767-77622786 Msa1078640:intron 15.0%
!! AAAAGCCTAAATATATATTA+TGG + chr7_2:77622847-77622866 None:intergenic 15.0%
!!! TGTTCTTTTAAATTTCTATT+GGG - chr7_2:77622909-77622928 Msa1078640:CDS 15.0%
!!! ATTTAACTTTGTAAATTTCA+AGG - chr7_2:77622963-77622982 Msa1078640:intron 15.0%
!!! TTTAACTTTGTAAATTTCAA+GGG - chr7_2:77622964-77622983 Msa1078640:intron 15.0%
!! TAGGAAAATGAAATTGAATT+GGG + chr7_2:77620655-77620674 None:intergenic 20.0%
!! ATAGGAAAATGAAATTGAAT+TGG + chr7_2:77620656-77620675 None:intergenic 20.0%
!! ATCAAATTTAAATCGAAAAC+CGG + chr7_2:77620800-77620819 None:intergenic 20.0%
!!! ATGCTCGTAATTTTTTTTTT+GGG - chr7_2:77620856-77620875 Msa1078640:exon 20.0%
!!! TTTTTTAACCAGTTTATGAA+TGG - chr7_2:77621330-77621349 Msa1078640:CDS 20.0%
!!! ATAATTTTCCATTCATAAAC+TGG + chr7_2:77621341-77621360 None:intergenic 20.0%
!! GAGACATATAACAAAAAAAA+AGG + chr7_2:77622458-77622477 None:intergenic 20.0%
!!! TCTTTTATAATTAGCTTTCA+AGG - chr7_2:77622476-77622495 Msa1078640:intron 20.0%
!!! TGCTTATATTTGAAATCAAA+AGG + chr7_2:77622632-77622651 None:intergenic 20.0%
!! TTGACCAAATTCATAAAATT+TGG + chr7_2:77622687-77622706 None:intergenic 20.0%
!! TACTGCCATAATATATATTT+AGG - chr7_2:77622839-77622858 Msa1078640:intron 20.0%
!!! CTGTTCTTTTAAATTTCTAT+TGG - chr7_2:77622908-77622927 Msa1078640:CDS 20.0%
!! TTAACTTTGTAAATTTCAAG+GGG - chr7_2:77622965-77622984 Msa1078640:intron 20.0%
!!! TCTGTTGTCTTTTATTTTTA+TGG - chr7_2:77623129-77623148 Msa1078640:intron 20.0%
!! TTTACTTATAAGCTGAAAAT+TGG - chr7_2:77623809-77623828 Msa1078640:intron 20.0%
!! TTACTTATAAGCTGAAAATT+GGG - chr7_2:77623810-77623829 Msa1078640:intron 20.0%
!! ATAAGGAAAAATACTTCTTA+AGG + chr7_2:77624188-77624207 None:intergenic 20.0%
!! ATTAAGCATTCAAAAAAAGA+TGG + chr7_2:77624270-77624289 None:intergenic 20.0%
!!! TTAAATTTTTAAACCTCTGT+TGG - chr7_2:77624328-77624347 Msa1078640:intron 20.0%
!!! ATAATAGCACTATTTTTCAT+TGG + chr7_2:77624485-77624504 None:intergenic 20.0%
!!! AATGAAAAATAGTGCTATTA+TGG - chr7_2:77624484-77624503 Msa1078640:five_prime_UTR 20.0%
! AGGAAAATGAAATTGAATTG+GGG + chr7_2:77620654-77620673 None:intergenic 25.0%
! CAAAAAAAAAATTACGAGCA+TGG + chr7_2:77620857-77620876 None:intergenic 25.0%
!!! CATGCTCGTAATTTTTTTTT+TGG - chr7_2:77620855-77620874 Msa1078640:exon 25.0%
! TGCAATCAATAATTGAATCT+GGG + chr7_2:77620973-77620992 None:intergenic 25.0%
! ATGCAATCAATAATTGAATC+TGG + chr7_2:77620974-77620993 None:intergenic 25.0%
! CCAATTTAAACAATTGTGAA+TGG + chr7_2:77621160-77621179 None:intergenic 25.0%
! CCATTCACAATTGTTTAAAT+TGG - chr7_2:77621157-77621176 Msa1078640:CDS 25.0%
! AAAAGACAAAAATTGCATAG+AGG + chr7_2:77621188-77621207 None:intergenic 25.0%
! TCATAAACTGGTTAAAAAAC+TGG + chr7_2:77621329-77621348 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr7_2:77621441-77621460 None:intergenic 25.0%
! AACTTAAATGATCTTGTTGA+AGG - chr7_2:77621849-77621868 Msa1078640:intron 25.0%
!!! AATGTTATTGCGTGTTTTTA+TGG - chr7_2:77621986-77622005 Msa1078640:intron 25.0%
! TTATTGTGGAATTTGCAAAA+GGG - chr7_2:77622400-77622419 Msa1078640:intron 25.0%
!!! AGGAGTTTTTTTGTTTTGTT+TGG - chr7_2:77622496-77622515 Msa1078640:intron 25.0%
! TATAAGCAAAAATTGGTCAA+AGG - chr7_2:77622644-77622663 Msa1078640:CDS 25.0%
! TCAAAGGAAGTTTATGAATT+TGG - chr7_2:77622660-77622679 Msa1078640:CDS 25.0%
!! TGGTCCAAATTTTATGAATT+TGG - chr7_2:77622680-77622699 Msa1078640:CDS 25.0%
! TCAAATAAAGGTGATGAATT+TGG + chr7_2:77622743-77622762 None:intergenic 25.0%
! TAACTTTGTAAATTTCAAGG+GGG - chr7_2:77622966-77622985 Msa1078640:intron 25.0%
! TTACTTTATGACAACATTGT+TGG - chr7_2:77623106-77623125 Msa1078640:intron 25.0%
!!! TCATGTTGCTATTTTTCTTT+TGG - chr7_2:77623230-77623249 Msa1078640:intron 25.0%
!!! CATGTTGCTATTTTTCTTTT+GGG - chr7_2:77623231-77623250 Msa1078640:intron 25.0%
! AAATTGAAATCATCAGTTGA+AGG + chr7_2:77623573-77623592 None:intergenic 25.0%
! AAAAATACTTCTTAAGGTGA+TGG + chr7_2:77624182-77624201 None:intergenic 25.0%
! AACAAAACATATGAATATCC+TGG + chr7_2:77624230-77624249 None:intergenic 25.0%
! TGGCTAATGTAATAAGAAAA+AGG + chr7_2:77624465-77624484 None:intergenic 25.0%
GATATAAATAGTGAAACGCA+TGG - chr7_2:77620547-77620566 Msa1078640:three_prime_UTR 30.0%
TTAAAGGGTGAATCAATTGA+AGG + chr7_2:77620731-77620750 None:intergenic 30.0%
TTGGGAATGGAATGATTAAA+GGG + chr7_2:77620746-77620765 None:intergenic 30.0%
ATTGGGAATGGAATGATTAA+AGG + chr7_2:77620747-77620766 None:intergenic 30.0%
! ATCTTCTCTTTTTCTCTTGA+TGG + chr7_2:77620911-77620930 None:intergenic 30.0%
!! GTTGTTTTCATAACCTATGT+TGG - chr7_2:77621580-77621599 Msa1078640:intron 30.0%
TTTCATAAGTTCTCCAACAT+AGG + chr7_2:77621596-77621615 None:intergenic 30.0%
TTCCCCTAACTTTAGATATA+GGG + chr7_2:77621731-77621750 None:intergenic 30.0%
TTTCCCCTAACTTTAGATAT+AGG + chr7_2:77621732-77621751 None:intergenic 30.0%
AAAGTTAGGGGAAAATATAC+AGG - chr7_2:77621738-77621757 Msa1078640:CDS 30.0%
!!! TTCTTTCCAAGCTTTGTTTT+GGG - chr7_2:77621761-77621780 Msa1078640:CDS 30.0%
AAGTTAAAAATGACACCTGT+GGG + chr7_2:77621834-77621853 None:intergenic 30.0%
TAAGTTAAAAATGACACCTG+TGG + chr7_2:77621835-77621854 None:intergenic 30.0%
! ATGATCTTGTTGAAGGTTTT+TGG - chr7_2:77621856-77621875 Msa1078640:intron 30.0%
! TGATCTTGTTGAAGGTTTTT+GGG - chr7_2:77621857-77621876 Msa1078640:intron 30.0%
!! ATTGCGTGTTTTTATGGAAT+TGG - chr7_2:77621992-77622011 Msa1078640:intron 30.0%
TTCCAGTAGTTAAGTAATGA+TGG - chr7_2:77622069-77622088 Msa1078640:intron 30.0%
AATGGTTTCCATAAACAGTA+AGG + chr7_2:77622095-77622114 None:intergenic 30.0%
AAAGTAACAAAACAGGGAAA+GGG + chr7_2:77622176-77622195 None:intergenic 30.0%
AAAAGTAACAAAACAGGGAA+AGG + chr7_2:77622177-77622196 None:intergenic 30.0%
ATTCCTGCTCAAAATATGTA+AGG + chr7_2:77622311-77622330 None:intergenic 30.0%
! TGATGATGCAAGATACAATT+TGG - chr7_2:77622350-77622369 Msa1078640:intron 30.0%
CTTATTGTGGAATTTGCAAA+AGG - chr7_2:77622399-77622418 Msa1078640:intron 30.0%
TATTGTGGAATTTGCAAAAG+GGG - chr7_2:77622401-77622420 Msa1078640:intron 30.0%
TCGTCAAATATATACATGGA+TGG + chr7_2:77622574-77622593 None:intergenic 30.0%
ACACTCGTCAAATATATACA+TGG + chr7_2:77622578-77622597 None:intergenic 30.0%
!! ATAGTATTGGCAATTTGCAA+GGG - chr7_2:77622792-77622811 Msa1078640:intron 30.0%
!! AGTTCACTATTCTTGCTTTT+TGG - chr7_2:77622879-77622898 Msa1078640:intron 30.0%
AAGTCTTCTTTCATCTTCAA+GGG + chr7_2:77622940-77622959 None:intergenic 30.0%
AAAGTCTTCTTTCATCTTCA+AGG + chr7_2:77622941-77622960 None:intergenic 30.0%
TTATGCTTTACTTTGACTGT+TGG - chr7_2:77623159-77623178 Msa1078640:intron 30.0%
CAACATGATCAGAAATACTA+GGG + chr7_2:77623218-77623237 None:intergenic 30.0%
!!! TTTTGGGCTTTAAATCATTC+AGG - chr7_2:77623247-77623266 Msa1078640:intron 30.0%
! TTTAAATCATTCAGGTTCCT+CGG - chr7_2:77623255-77623274 Msa1078640:intron 30.0%
AGAACAGTCCAAAAAAATTG+AGG - chr7_2:77623453-77623472 Msa1078640:intron 30.0%
ATTGCAACAATGCTTTCTAA+TGG - chr7_2:77623537-77623556 Msa1078640:intron 30.0%
TTGAAAGCTGTAAATAGTTC+AGG - chr7_2:77623751-77623770 Msa1078640:intron 30.0%
! TTTTCCTTATAAATGAGCTC+AGG - chr7_2:77624198-77624217 Msa1078640:intron 30.0%
TGAATGCTTAATGATGCTTA+TGG - chr7_2:77624278-77624297 Msa1078640:intron 30.0%
ATGCTTATGGTTATGAACAA+CGG - chr7_2:77624291-77624310 Msa1078640:intron 30.0%
! AAAACCTAACCCTTTGAAAG+TGG + chr7_2:77620585-77620604 None:intergenic 35.0%
! CTTTCAAAGGGTTAGGTTTT+CGG - chr7_2:77620585-77620604 Msa1078640:three_prime_UTR 35.0%
AGAGAGAAGAGAATAAGGAT+TGG + chr7_2:77620628-77620647 None:intergenic 35.0%
GGAAAAGAGAGAAGAGAATA+AGG + chr7_2:77620633-77620652 None:intergenic 35.0%
ATGAAATTGGGAATTGGGAA+TGG + chr7_2:77620759-77620778 None:intergenic 35.0%
GATCGATGAAATTGGGAATT+GGG + chr7_2:77620764-77620783 None:intergenic 35.0%
CAATTCCCAATTTCATCGAT+CGG - chr7_2:77620763-77620782 Msa1078640:three_prime_UTR 35.0%
ACAAACCGATCGATGAAATT+GGG + chr7_2:77620771-77620790 None:intergenic 35.0%
TACAAACCGATCGATGAAAT+TGG + chr7_2:77620772-77620791 None:intergenic 35.0%
TCTCATTCCTAGACTATTAG+AGG - chr7_2:77621262-77621281 Msa1078640:intron 35.0%
AACCTAGCTAGATTAGTGAT+AGG - chr7_2:77621387-77621406 Msa1078640:CDS 35.0%
AACCTATCACTAATCTAGCT+AGG + chr7_2:77621392-77621411 None:intergenic 35.0%
AGCTAGATTAGTGATAGGTT+TGG - chr7_2:77621392-77621411 Msa1078640:CDS 35.0%
TTATTTGCAGCTTATAGCAC+AGG - chr7_2:77621456-77621475 Msa1078640:intron 35.0%
CTTTAGATATAGGGCCTATT+TGG + chr7_2:77621722-77621741 None:intergenic 35.0%
! TAGGCCCTATATCTAAAGTT+AGG - chr7_2:77621724-77621743 Msa1078640:CDS 35.0%
! AGGCCCTATATCTAAAGTTA+GGG - chr7_2:77621725-77621744 Msa1078640:CDS 35.0%
!!! GTTCTTTCCAAGCTTTGTTT+TGG - chr7_2:77621760-77621779 Msa1078640:CDS 35.0%
! TTTTGGGCTTGGATTTATGT+TGG - chr7_2:77621777-77621796 Msa1078640:intron 35.0%
TTATACCTCATGTTATGCGT+GGG - chr7_2:77621800-77621819 Msa1078640:intron 35.0%
!!! TTTTGGGTTTTCACTAAACC+CGG - chr7_2:77621873-77621892 Msa1078640:intron 35.0%
ATTACACCAAGATTACACCA+AGG + chr7_2:77621920-77621939 None:intergenic 35.0%
! TGGTGTAATCTTGGTGTAAT+TGG - chr7_2:77621920-77621939 Msa1078640:intron 35.0%
! TGTAATCTTGGTGTAATTGG+TGG - chr7_2:77621923-77621942 Msa1078640:intron 35.0%
AATTGGCAACAATCACAAAC+TGG - chr7_2:77622009-77622028 Msa1078640:intron 35.0%
! AATGATGGCCTTACTGTTTA+TGG - chr7_2:77622084-77622103 Msa1078640:intron 35.0%
AGGGTAAGAACTTACAACAA+AGG + chr7_2:77622157-77622176 None:intergenic 35.0%
!! GTTCCTTACATATTTTGAGC+AGG - chr7_2:77622305-77622324 Msa1078640:intron 35.0%
GATGCAAGATACAATTTGGA+TGG - chr7_2:77622354-77622373 Msa1078640:intron 35.0%
AAGGGGTAGGAATTAATTTC+CGG - chr7_2:77622418-77622437 Msa1078640:intron 35.0%
! AAAGGTGTAATAAGTACAGC+CGG + chr7_2:77622440-77622459 None:intergenic 35.0%
TTTGATTCCGGAGATAGTAT+TGG - chr7_2:77622779-77622798 Msa1078640:intron 35.0%
CAAATTGCCAATACTATCTC+CGG + chr7_2:77622789-77622808 None:intergenic 35.0%
!! GATAGTATTGGCAATTTGCA+AGG - chr7_2:77622791-77622810 Msa1078640:intron 35.0%
AGCAAGAATAGTGAACTCTA+AGG + chr7_2:77622876-77622895 None:intergenic 35.0%
GGTTTACTAGCGCTTTATAA+TGG - chr7_2:77622987-77623006 Msa1078640:intron 35.0%
TTATGCTGCTATATAGCAAG+AGG + chr7_2:77623037-77623056 None:intergenic 35.0%
GCAACATGATCAGAAATACT+AGG + chr7_2:77623219-77623238 None:intergenic 35.0%
! TTAAATCATTCAGGTTCCTC+GGG - chr7_2:77623256-77623275 Msa1078640:intron 35.0%
CAGTCCAAAAAAATTGAGGT+AGG - chr7_2:77623457-77623476 Msa1078640:intron 35.0%
TTATAAATGAGCTCAGGACT+CGG - chr7_2:77624204-77624223 Msa1078640:intron 35.0%
! CTAACCCTTTGAAAGTGGAT+CGG + chr7_2:77620580-77620599 None:intergenic 40.0%
! AATAAGGATTGGTACCTTGG+AGG + chr7_2:77620617-77620636 None:intergenic 40.0%
! GAGAATAAGGATTGGTACCT+TGG + chr7_2:77620620-77620639 None:intergenic 40.0%
CATGCAATTACAAGATCCGA+TGG + chr7_2:77620701-77620720 None:intergenic 40.0%
CGATCGATGAAATTGGGAAT+TGG + chr7_2:77620765-77620784 None:intergenic 40.0%
!! TCGATCGGTTTGTATTTCTC+CGG - chr7_2:77620778-77620797 Msa1078640:three_prime_UTR 40.0%
GTTCTATCACATTCCATGTC+TGG - chr7_2:77621232-77621251 Msa1078640:intron 40.0%
ATGAGATACACAACCAGACA+TGG + chr7_2:77621248-77621267 None:intergenic 40.0%
ATCCCAAACCTTGTGTTTGT+CGG - chr7_2:77621287-77621306 Msa1078640:intron 40.0%
ATCCGACAAACACAAGGTTT+GGG + chr7_2:77621292-77621311 None:intergenic 40.0%
AATCCGACAAACACAAGGTT+TGG + chr7_2:77621293-77621312 None:intergenic 40.0%
GAACAAATCCGACAAACACA+AGG + chr7_2:77621298-77621317 None:intergenic 40.0%
ATTAGTGATAGGTTTGGCCT+GGG - chr7_2:77621398-77621417 Msa1078640:CDS 40.0%
TCAACTACGCCAATCCAAAT+AGG - chr7_2:77621705-77621724 Msa1078640:CDS 40.0%
GATATAGGGCCTATTTGGAT+TGG + chr7_2:77621717-77621736 None:intergenic 40.0%
! GGCCCTATATCTAAAGTTAG+GGG - chr7_2:77621726-77621745 Msa1078640:CDS 40.0%
GTTATACCTCATGTTATGCG+TGG - chr7_2:77621799-77621818 Msa1078640:intron 40.0%
AAAATGACACCTGTGGGATA+CGG + chr7_2:77621828-77621847 None:intergenic 40.0%
! TGGTGTTTAGTTCGTCTTTG+AGG - chr7_2:77622029-77622048 Msa1078640:intron 40.0%
! GGTGTTTAGTTCGTCTTTGA+GGG - chr7_2:77622030-77622049 Msa1078640:intron 40.0%
! GTGTTTAGTTCGTCTTTGAG+GGG - chr7_2:77622031-77622050 Msa1078640:intron 40.0%
GGCCATCATTACTTAACTAC+TGG + chr7_2:77622074-77622093 None:intergenic 40.0%
ATGTTCATTGCTCTGCCTAA+AGG - chr7_2:77622215-77622234 Msa1078640:intron 40.0%
AGATAATAGAAGCCGCCTTT+AGG + chr7_2:77622233-77622252 None:intergenic 40.0%
! TGATGGAAGTCGTCTTATTG+TGG - chr7_2:77622386-77622405 Msa1078640:intron 40.0%
! CTAAAGCATCAGCATTAGAC+AGG + chr7_2:77622527-77622546 None:intergenic 40.0%
CTAGCGCTTTATAATGGCTT+TGG - chr7_2:77622993-77623012 Msa1078640:intron 40.0%
! TAAATCATTCAGGTTCCTCG+GGG - chr7_2:77623257-77623276 Msa1078640:intron 40.0%
! TCGGGATTCTAGGGAATATT+TGG - chr7_2:77623292-77623311 Msa1078640:intron 40.0%
! CGGGATTCTAGGGAATATTT+GGG - chr7_2:77623293-77623312 Msa1078640:intron 40.0%
! TGCTTTAACTGTGGCATTGA+TGG - chr7_2:77623344-77623363 Msa1078640:intron 40.0%
!!! ACGGCCTACCTCAATTTTTT+TGG + chr7_2:77623464-77623483 None:intergenic 40.0%
AAAAAAATTGAGGTAGGCCG+TGG - chr7_2:77623463-77623482 Msa1078640:intron 40.0%
TTAAGATTACAGCACCAGCT+TGG + chr7_2:77623499-77623518 None:intergenic 40.0%
TTCTGACAGGAGATCTTGAT+CGG + chr7_2:77623854-77623873 None:intergenic 40.0%
GTGATCTATCTGAAGGAACT+GGG + chr7_2:77623887-77623906 None:intergenic 40.0%
CAGTTCCTTCAGATAGATCA+CGG - chr7_2:77623886-77623905 Msa1078640:intron 40.0%
!! CTATACTTCCTTGACTTGGA+AGG + chr7_2:77623921-77623940 None:intergenic 40.0%
TCGACTATACTTCCTTGACT+TGG + chr7_2:77623925-77623944 None:intergenic 40.0%
AAGTATAGTCGATCTCCTGA+AGG - chr7_2:77623933-77623952 Msa1078640:intron 40.0%
ACTGTAATCAGACCCATCTT+GGG + chr7_2:77624006-77624025 None:intergenic 40.0%
TATCTTCATTGTCCCTTGAG+GGG + chr7_2:77624055-77624074 None:intergenic 40.0%
CTATCTTCATTGTCCCTTGA+GGG + chr7_2:77624056-77624075 None:intergenic 40.0%
AAGATAGCCCTAAGGCTAAT+GGG - chr7_2:77624069-77624088 Msa1078640:intron 40.0%
GAGTCCTGAGCTCATTTATA+AGG + chr7_2:77624205-77624224 None:intergenic 40.0%
ACAATTGTTGCAACCAACAG+AGG + chr7_2:77624344-77624363 None:intergenic 40.0%
AGAAGCCGATCCACTTTCAA+AGG - chr7_2:77620572-77620591 Msa1078640:three_prime_UTR 45.0%
GAAGCCGATCCACTTTCAAA+GGG - chr7_2:77620573-77620592 Msa1078640:three_prime_UTR 45.0%
CGATCCACTTTCAAAGGGTT+AGG - chr7_2:77620578-77620597 Msa1078640:three_prime_UTR 45.0%
CCATACTTATCATCGTAGCG+AGG + chr7_2:77621020-77621039 None:intergenic 45.0%
CCTCGCTACGATGATAAGTA+TGG - chr7_2:77621017-77621036 Msa1078640:CDS 45.0%
AAGACAAACGACCCACATAG+AGG + chr7_2:77621052-77621071 None:intergenic 45.0%
GGGATCTCCTCTAATAGTCT+AGG + chr7_2:77621272-77621291 None:intergenic 45.0%
CAAAGTGACACAAGGAGACA+TGG + chr7_2:77621366-77621385 None:intergenic 45.0%
CTAGGTTGCAAAGTGACACA+AGG + chr7_2:77621374-77621393 None:intergenic 45.0%
GATTAGTGATAGGTTTGGCC+TGG - chr7_2:77621397-77621416 Msa1078640:CDS 45.0%
TTAGTGATAGGTTTGGCCTG+GGG - chr7_2:77621399-77621418 Msa1078640:CDS 45.0%
!!! TCCAAGCTTTGTTTTGGGCT+TGG - chr7_2:77621766-77621785 Msa1078640:CDS 45.0%
TCCAAGCCCAAAACAAAGCT+TGG + chr7_2:77621770-77621789 None:intergenic 45.0%
!! TCCTACCTGAGTGTTGACTT+TGG - chr7_2:77621950-77621969 Msa1078640:intron 45.0%
AATCGCCAAAGTCAACACTC+AGG + chr7_2:77621958-77621977 None:intergenic 45.0%
TTCATTGCTCTGCCTAAAGG+CGG - chr7_2:77622218-77622237 Msa1078640:intron 45.0%
GGCGGCTTCTATTATCTACA+CGG - chr7_2:77622236-77622255 Msa1078640:intron 45.0%
GCGGCTTCTATTATCTACAC+GGG - chr7_2:77622237-77622256 Msa1078640:intron 45.0%
CGGCTTCTATTATCTACACG+GGG - chr7_2:77622238-77622257 Msa1078640:intron 45.0%
GGCTTCTATTATCTACACGG+GGG - chr7_2:77622239-77622258 Msa1078640:intron 45.0%
TTGGATGGTCGCGATATTGA+TGG - chr7_2:77622369-77622388 Msa1078640:intron 45.0%
GTGGAATTTGCAAAAGGGGT+AGG - chr7_2:77622405-77622424 Msa1078640:intron 45.0%
TCTAGGGAATATTTGGGTCG+AGG - chr7_2:77623299-77623318 Msa1078640:intron 45.0%
AAGAACAAGTGTTACCGCTG+TGG - chr7_2:77623401-77623420 Msa1078640:intron 45.0%
AGAACAAGTGTTACCGCTGT+GGG - chr7_2:77623402-77623421 Msa1078640:intron 45.0%
CGTGATCTATCTGAAGGAAC+TGG + chr7_2:77623888-77623907 None:intergenic 45.0%
!! TACTTCCTTGACTTGGAAGG+CGG + chr7_2:77623918-77623937 None:intergenic 45.0%
CACTGTAATCAGACCCATCT+TGG + chr7_2:77624007-77624026 None:intergenic 45.0%
GATGGGTCTGATTACAGTGA+TGG - chr7_2:77624008-77624027 Msa1078640:CDS 45.0%
GCTATCTTCATTGTCCCTTG+AGG + chr7_2:77624057-77624076 None:intergenic 45.0%
GGACAATGAAGATAGCCCTA+AGG - chr7_2:77624061-77624080 Msa1078640:intron 45.0%
GAAGATAGCCCTAAGGCTAA+TGG - chr7_2:77624068-77624087 Msa1078640:intron 45.0%
TTGTCATCATCCTCCTCTAC+GGG + chr7_2:77624146-77624165 None:intergenic 45.0%
GTTGTCATCATCCTCCTCTA+CGG + chr7_2:77624147-77624166 None:intergenic 45.0%
! GTTTTCGGCAATCTCCTCCA+AGG - chr7_2:77620600-77620619 Msa1078640:three_prime_UTR 50.0%
TGGCAATACTCGCCTCTATG+TGG - chr7_2:77621037-77621056 Msa1078640:CDS 50.0%
GGCAATACTCGCCTCTATGT+GGG - chr7_2:77621038-77621057 Msa1078640:CDS 50.0%
GGGTCTTCAGCAGATATGGA+AGG - chr7_2:77621099-77621118 Msa1078640:CDS 50.0%
! TGGGTTTTCACTAAACCCGG+AGG - chr7_2:77621876-77621895 Msa1078640:intron 50.0%
GCCAAAGTCAACACTCAGGT+AGG + chr7_2:77621954-77621973 None:intergenic 50.0%
TATCCACATCTCGAACGCTG+CGG + chr7_2:77622119-77622138 None:intergenic 50.0%
CACGGGGGAGTTCAATTATG+CGG - chr7_2:77622254-77622273 Msa1078640:intron 50.0%
CTTGCATCATCAGCATCTCG+AGG + chr7_2:77622342-77622361 None:intergenic 50.0%
CCTAGAATCCCGAGAATCAC+GGG + chr7_2:77623285-77623304 None:intergenic 50.0%
CCCTAGAATCCCGAGAATCA+CGG + chr7_2:77623286-77623305 None:intergenic 50.0%
CCGTGATTCTCGGGATTCTA+GGG - chr7_2:77623283-77623302 Msa1078640:intron 50.0%
TTAAAGCAGCGTCCAGATCC+AGG + chr7_2:77623332-77623351 None:intergenic 50.0%
! TCTGGACGCTGCTTTAACTG+TGG - chr7_2:77623335-77623354 Msa1078640:intron 50.0%
GAGATTGCAAAGCTGGGGAT+TGG - chr7_2:77623378-77623397 Msa1078640:intron 50.0%
GAACAAGTGTTACCGCTGTG+GGG - chr7_2:77623403-77623422 Msa1078640:intron 50.0%
! CGAAGTGTTTCACGTTCTCC+AGG - chr7_2:77623618-77623637 Msa1078640:intron 50.0%
GGACTCCGTGATCTATCTGA+AGG + chr7_2:77623894-77623913 None:intergenic 50.0%
!! CTCTTTTGTGGACTGCCTTC+AGG + chr7_2:77623951-77623970 None:intergenic 50.0%
! CACAAAAGAGCGCATCTCCT+GGG - chr7_2:77623961-77623980 Msa1078640:CDS 50.0%
CGCATCTCCTGGGAATGATA+GGG - chr7_2:77623971-77623990 Msa1078640:CDS 50.0%
ATCTCCTGGGAATGATAGGG+TGG - chr7_2:77623974-77623993 Msa1078640:CDS 50.0%
TGTCATCATCCTCCTCTACG+GGG + chr7_2:77624145-77624164 None:intergenic 50.0%
ACGAACTCGTTCCCGTGATC+TGG - chr7_2:77621073-77621092 Msa1078640:CDS 55.0%
TGAAGACCCGCTCCAGATCA+CGG + chr7_2:77621088-77621107 None:intergenic 55.0%
GAGCGGGTCTTCAGCAGATA+TGG - chr7_2:77621095-77621114 Msa1078640:CDS 55.0%
CCAAACAGGCCCACAGACAA+TGG + chr7_2:77621427-77621446 None:intergenic 55.0%
CCATTGTCTGTGGGCCTGTT+TGG - chr7_2:77621424-77621443 Msa1078640:CDS 55.0%
CGGTTCCCACGCATAACATG+AGG + chr7_2:77621808-77621827 None:intergenic 55.0%
TCACTAAACCCGGAGGTCTG+TGG - chr7_2:77621883-77621902 Msa1078640:intron 55.0%
TAAACCCGGAGGTCTGTGGT+GGG - chr7_2:77621887-77621906 Msa1078640:intron 55.0%
! GGGTGGCCTTGGTGTAATCT+TGG - chr7_2:77621911-77621930 Msa1078640:intron 55.0%
CATCTCGAACGCTGCGGAAA+TGG + chr7_2:77622113-77622132 None:intergenic 55.0%
TTTCCGCAGCGTTCGAGATG+TGG - chr7_2:77622113-77622132 Msa1078640:intron 55.0%
CCCGTGATTCTCGGGATTCT+AGG - chr7_2:77623282-77623301 Msa1078640:intron 55.0%
!! ACTGTGGCATTGATGGCCAC+TGG - chr7_2:77623351-77623370 Msa1078640:intron 55.0%
!! CTGTGGCATTGATGGCCACT+GGG - chr7_2:77623352-77623371 Msa1078640:intron 55.0%
CTTTGCAATCTCGAGCCCAG+TGG + chr7_2:77623370-77623389 None:intergenic 55.0%
TGGGCTCGAGATTGCAAAGC+TGG - chr7_2:77623371-77623390 Msa1078640:intron 55.0%
GGGCTCGAGATTGCAAAGCT+GGG - chr7_2:77623372-77623391 Msa1078640:intron 55.0%
GGCTCGAGATTGCAAAGCTG+GGG - chr7_2:77623373-77623392 Msa1078640:intron 55.0%
TATGACCTCTCTCCCCACAG+CGG + chr7_2:77623418-77623437 None:intergenic 55.0%
ATTGAGGTAGGCCGTGGTGT+TGG - chr7_2:77623469-77623488 Msa1078640:intron 55.0%
TTGAGGTAGGCCGTGGTGTT+GGG - chr7_2:77623470-77623489 Msa1078640:intron 55.0%
AGCTTGGAACCCCAACACCA+CGG + chr7_2:77623483-77623502 None:intergenic 55.0%
GTGTTTCACGTTCTCCAGGC+AGG - chr7_2:77623622-77623641 Msa1078640:intron 55.0%
TCTCCTAGGAGAACGAGACC+TGG + chr7_2:77623679-77623698 None:intergenic 55.0%
AGGTCTCGTTCTCCTAGGAG+AGG - chr7_2:77623678-77623697 Msa1078640:intron 55.0%
ACTGACCTATAGCTGCGAGC+CGG + chr7_2:77623729-77623748 None:intergenic 55.0%
GACAGGAGATCTTGATCGGC+TGG + chr7_2:77623850-77623869 None:intergenic 55.0%
GGGCTTCGATCTCTTCTGAC+AGG + chr7_2:77623867-77623886 None:intergenic 55.0%
!! TTCCTTGACTTGGAAGGCGG+AGG + chr7_2:77623915-77623934 None:intergenic 55.0%
! CCAGGAGATGCGCTCTTTTG+TGG + chr7_2:77623963-77623982 None:intergenic 55.0%
! CCACAAAAGAGCGCATCTCC+TGG - chr7_2:77623960-77623979 Msa1078640:CDS 55.0%
GCGCATCTCCTGGGAATGAT+AGG - chr7_2:77623970-77623989 Msa1078640:CDS 55.0%
GCAACCACCCTATCATTCCC+AGG + chr7_2:77623981-77624000 None:intergenic 55.0%
AGGGTGGTTGCAACCCAAGA+TGG - chr7_2:77623990-77624009 Msa1078640:CDS 55.0%
GGGTGGTTGCAACCCAAGAT+GGG - chr7_2:77623991-77624010 Msa1078640:CDS 55.0%
TGAAGAGCAGAAGCCCCTCA+AGG - chr7_2:77624039-77624058 Msa1078640:exon 55.0%
GAAGAGCAGAAGCCCCTCAA+GGG - chr7_2:77624040-77624059 Msa1078640:exon 55.0%
!! TGCTGCGCCCATTAGCCTTA+GGG + chr7_2:77624079-77624098 None:intergenic 55.0%
CTCGTTCCCGTGATCTGGAG+CGG - chr7_2:77621078-77621097 Msa1078640:CDS 60.0%
! TCGTTCCCGTGATCTGGAGC+GGG - chr7_2:77621079-77621098 Msa1078640:CDS 60.0%
GAAGACCCGCTCCAGATCAC+GGG + chr7_2:77621087-77621106 None:intergenic 60.0%
!! CCTGGGGTGCCATTGTCTGT+GGG - chr7_2:77621415-77621434 Msa1078640:CDS 60.0%
CTAAACCCGGAGGTCTGTGG+TGG - chr7_2:77621886-77621905 Msa1078640:intron 60.0%
CTCGGGGTTCCCGTGATTCT+CGG - chr7_2:77623273-77623292 Msa1078640:intron 60.0%
TCGGGGTTCCCGTGATTCTC+GGG - chr7_2:77623274-77623293 Msa1078640:intron 60.0%
AAGCAGCGTCCAGATCCAGG+AGG + chr7_2:77623329-77623348 None:intergenic 60.0%
TGTTACCGCTGTGGGGAGAG+AGG - chr7_2:77623410-77623429 Msa1078640:intron 60.0%
! TGAGGTAGGCCGTGGTGTTG+GGG - chr7_2:77623471-77623490 Msa1078640:intron 60.0%
! GTGGTGTTGGGGTTCCAAGC+TGG - chr7_2:77623482-77623501 Msa1078640:intron 60.0%
CTAGGAGAACGAGACCTGGC+TGG + chr7_2:77623675-77623694 None:intergenic 60.0%
CAGCCAGGTCTCGTTCTCCT+AGG - chr7_2:77623673-77623692 Msa1078640:intron 60.0%
TCACGGCTTCTGCCTCTCCT+AGG + chr7_2:77623693-77623712 None:intergenic 60.0%
CCGGGCTGTAGCTTCTGTCA+CGG + chr7_2:77623710-77623729 None:intergenic 60.0%
CCGTGACAGAAGCTACAGCC+CGG - chr7_2:77623707-77623726 Msa1078640:intron 60.0%
CTGACCTATAGCTGCGAGCC+GGG + chr7_2:77623728-77623747 None:intergenic 60.0%
GTCCTCCGCCTTCCAAGTCA+AGG - chr7_2:77623910-77623929 Msa1078640:intron 60.0%
!! CTGCTGCGCCCATTAGCCTT+AGG + chr7_2:77624080-77624099 None:intergenic 60.0%
TATCCTCATCCCTGGGGCTG+CGG + chr7_2:77624118-77624137 None:intergenic 60.0%
GGCTCCTATCCTCATCCCTG+GGG + chr7_2:77624124-77624143 None:intergenic 60.0%
GGGCTCCTATCCTCATCCCT+GGG + chr7_2:77624125-77624144 None:intergenic 60.0%
TGAGGATAGGAGCCCCGTAG+AGG - chr7_2:77624130-77624149 Msa1078640:intron 60.0%
AATGAGCTCAGGACTCGGCC+AGG - chr7_2:77624209-77624228 Msa1078640:intron 60.0%
!! GCCTGGGGTGCCATTGTCTG+TGG - chr7_2:77621414-77621433 Msa1078640:CDS 65.0%
CCCACAGACAATGGCACCCC+AGG + chr7_2:77621418-77621437 None:intergenic 65.0%
GCGTGGGAACCGTATCCCAC+AGG - chr7_2:77621816-77621835 Msa1078640:intron 65.0%
ACCCTCCCACCACAGACCTC+CGG + chr7_2:77621895-77621914 None:intergenic 65.0%
CGAGAATCACGGGAACCCCG+AGG + chr7_2:77623275-77623294 None:intergenic 65.0%
TTGGGTCGAGGTCCACCTCC+TGG - chr7_2:77623311-77623330 Msa1078640:intron 65.0%
CGAGGTCCACCTCCTGGATC+TGG - chr7_2:77623317-77623336 Msa1078640:intron 65.0%
CAGCGTCCAGATCCAGGAGG+TGG + chr7_2:77623326-77623345 None:intergenic 65.0%
GCTGGAGAACGTGACCTGCC+TGG + chr7_2:77623639-77623658 None:intergenic 65.0%
GCAGGTCACGTTCTCCAGCC+AGG - chr7_2:77623640-77623659 Msa1078640:intron 65.0%
GCTGGAGAACGAGACCTGGC+TGG + chr7_2:77623657-77623676 None:intergenic 65.0%
CCTGGCTGGAGAACGAGACC+TGG + chr7_2:77623661-77623680 None:intergenic 65.0%
CCAGGTCTCGTTCTCCAGCC+AGG - chr7_2:77623658-77623677 Msa1078640:intron 65.0%
! ACAGCCCGGCTCGCAGCTAT+AGG - chr7_2:77623721-77623740 Msa1078640:intron 65.0%
GCAGCCCCAGGGATGAGGAT+AGG - chr7_2:77624117-77624136 Msa1078640:intron 65.0%
GGGGCTCCTATCCTCATCCC+TGG + chr7_2:77624126-77624145 None:intergenic 65.0%
GGATAGGAGCCCCGTAGAGG+AGG - chr7_2:77624133-77624152 Msa1078640:intron 65.0%
! ACCCGGAGGTCTGTGGTGGG+AGG - chr7_2:77621890-77621909 Msa1078640:intron 70.0%
CCCTCCCACCACAGACCTCC+GGG + chr7_2:77621894-77621913 None:intergenic 70.0%
! CCCGGAGGTCTGTGGTGGGA+GGG - chr7_2:77621891-77621910 Msa1078640:intron 70.0%
! GGAGGTCTGTGGTGGGAGGG+TGG - chr7_2:77621894-77621913 Msa1078640:intron 70.0%
! CTGTGGTGGGAGGGTGGCCT+TGG - chr7_2:77621900-77621919 Msa1078640:intron 70.0%
TGGGGCTGCGGCTGCGGCTT+CGG + chr7_2:77624106-77624125 None:intergenic 75.0%
AAGCCGCAGCCGCAGCCCCA+GGG - chr7_2:77624106-77624125 Msa1078640:intron 75.0%
CATCCCTGGGGCTGCGGCTG+CGG + chr7_2:77624112-77624131 None:intergenic 75.0%
CAGCCGCAGCCCCAGGGATG+AGG - chr7_2:77624112-77624131 Msa1078640:intron 75.0%
! GAAGCCGCAGCCGCAGCCCC+AGG - chr7_2:77624105-77624124 Msa1078640:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77620535 77624523 77620535 ID=Msa1078640;Name=Msa1078640
chr7_2 mRNA 77620535 77624523 77620535 ID=Msa1078640-mRNA-1;Parent=Msa1078640;Name=Msa1078640-mRNA-1;_AED=0.23;_eAED=0.23;_QI=103|1|1|1|0.83|0.71|7|333|307
chr7_2 exon 77620535 77621207 77620535 ID=Msa1078640-mRNA-1:exon:19115;Parent=Msa1078640-mRNA-1
chr7_2 exon 77621316 77621450 77621316 ID=Msa1078640-mRNA-1:exon:19114;Parent=Msa1078640-mRNA-1
chr7_2 exon 77621584 77621789 77621584 ID=Msa1078640-mRNA-1:exon:19113;Parent=Msa1078640-mRNA-1
chr7_2 exon 77622636 77622731 77622636 ID=Msa1078640-mRNA-1:exon:19112;Parent=Msa1078640-mRNA-1
chr7_2 exon 77622897 77622936 77622897 ID=Msa1078640-mRNA-1:exon:19111;Parent=Msa1078640-mRNA-1
chr7_2 exon 77623938 77624060 77623938 ID=Msa1078640-mRNA-1:exon:19110;Parent=Msa1078640-mRNA-1
chr7_2 exon 77624437 77624523 77624437 ID=Msa1078640-mRNA-1:exon:19109;Parent=Msa1078640-mRNA-1
chr7_2 five_prime_UTR 77624437 77624523 77624437 ID=Msa1078640-mRNA-1:five_prime_utr;Parent=Msa1078640-mRNA-1
chr7_2 five_prime_UTR 77624045 77624060 77624045 ID=Msa1078640-mRNA-1:five_prime_utr;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77623938 77624044 77623938 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77622897 77622936 77622897 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77622636 77622731 77622636 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77621584 77621789 77621584 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77621316 77621450 77621316 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 CDS 77620868 77621207 77620868 ID=Msa1078640-mRNA-1:cds;Parent=Msa1078640-mRNA-1
chr7_2 three_prime_UTR 77620535 77620867 77620535 ID=Msa1078640-mRNA-1:three_prime_utr;Parent=Msa1078640-mRNA-1
Gene Sequence

>Msa1078640

ATGCCTCGCTACGATGATAAGTATGGCAATACTCGCCTCTATGTGGGTCGTTTGTCTTCACGAACTCGTTCCCGTGATCTGGAGCGGGTCTTCAGCAGATATGGAAGCGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTTAGAGATCCTCGAGATGCTGATGATGCAAGATACAATTTGGATGGTCGCGATATTGATGGAAGTCGTCTTATTGTGGAATTTGCAAAAGGGGTTCCTCGGGGTTCCCGTGATTCTCGGGATTCTAGGGAATATTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCATATCGAAAAGAACTGCAAGAACAGTCCAAAAAAATTGAGCAGACATGCACGAAGTGTTTCACGTTCTCCAGGCAGGTCACGTTCTCCAGCCAGGTCTCGTTCTCCAGCCAGGTCTCGTTCTCCTAGGAGAGGCAGAAGCCGTGACAGAAGCTACAGCCCGGCTCGCAGCTATAGCCGATCAAGATCTCCTGTCAGAAGAGATCGAAGCCCAGTTCCTTCAGATAGATCACGGAGTCCTCCGCCTTCCAAGTCAAGGAAGTATAGTCGATCTCCTGAAGGCAGTCCACAAAAGAGCGCATCTCCTGGGAATGATAGGGTGGTTGCAACCCAAGATGGGTCTGATTACAGTGATGGTGCTAGAGTGAAGAGCAGAAGCCCCTCAAGGGACAATGAAGATAGCCCTAAGGCTAATGGGCGCAGCAGAAGCCGAAGCCGCAGCCGCAGCCCCAGGGATGAGGATAGGAGCCCCGTAGAGGAGGATGATGACAACAATCGTCGCTCTCCATCACCTTAA

Protein sequence

>Msa1078640

MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRHARSVSRSPGRSRSPARSRSPARSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSPVPSDRSRSPPPSKSRKYSRSPEGSPQKSASPGNDRVVATQDGSDYSDGARVKSRSPSRDNEDSPKANGRSRSRSRSRSPRDEDRSPVEEDDDNNRRSPSP*