AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121320 MtrunA17_Chr1g0180371 93.190 279 11 1 1 271 1 279 0.0 511
Msa0121320 MtrunA17_Chr1g0180331 60.456 263 91 5 13 265 14 273 1.05e-108 316
Msa0121320 MtrunA17_Chr7g0264911 61.215 214 73 3 67 270 1 214 1.71e-89 265
Msa0121320 MtrunA17_Chr4g0028711 50.813 246 108 3 28 264 25 266 2.55e-84 253
Msa0121320 MtrunA17_Chr4g0028741 46.970 264 122 6 16 266 13 271 4.21e-84 253
Msa0121320 MtrunA17_Chr7g0257091 47.059 272 124 7 11 271 5 267 5.91e-82 247
Msa0121320 MtrunA17_Chr4g0028721 51.131 221 95 3 34 245 5 221 1.71e-74 227
Msa0121320 MtrunA17_Chr1g0178591 39.382 259 133 6 21 265 15 263 4.86e-58 186
Msa0121320 MtrunA17_Chr4g0028731 40.948 232 86 2 33 264 4 184 6.66e-57 181
Msa0121320 MtrunA17_Chr1g0178601 37.594 266 147 5 14 265 3 263 2.06e-55 179
Msa0121320 MtrunA17_Chr1g0178541 35.669 157 84 4 124 266 25 178 9.17e-23 92.4
Msa0121320 MtrunA17_Chr1g0178561 49.091 55 28 0 87 141 8 62 3.45e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121320 AT2G28210.1 51.698 265 114 5 14 268 14 274 1.61e-94 280
Msa0121320 AT1G08080.1 52.245 245 104 3 32 267 33 273 1.85e-90 269
Msa0121320 AT4G20990.1 46.415 265 124 5 14 267 8 265 6.51e-80 242
Msa0121320 AT1G08065.1 46.038 265 127 7 14 267 11 270 1.68e-75 231
Msa0121320 AT4G21000.1 45.205 219 102 4 10 228 19 219 5.44e-66 206
Msa0121320 AT5G04180.1 41.923 260 135 5 15 264 4 257 1.34e-62 198
Msa0121320 AT5G56330.1 43.388 242 99 5 32 270 133 339 3.50e-57 187
Msa0121320 AT5G56330.2 46.667 180 87 5 32 207 133 307 6.19e-47 159
Msa0121320 AT2G28210.2 51.773 141 63 2 14 149 14 154 8.86e-46 151
Msa0121320 AT3G52720.3 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0121320 AT3G52720.4 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0121320 AT3G52720.1 33.962 265 153 6 15 265 9 265 8.09e-45 153
Msa0121320 AT3G52720.2 33.333 228 138 5 15 236 9 228 3.53e-36 129

Find 84 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTCATTCCTTTCGTTT+TGG 0.214741 1_3:+47092694 None:intergenic
GTTGTATCTCTCTTCTATTC+AGG 0.261851 1_3:+47092725 None:intergenic
ATTGGTCTAATGTATAAAAT+TGG 0.268694 1_3:-47094588 Msa0121320:CDS
TACACAAAAGGTAGCAAAAT+AGG 0.312146 1_3:-47098074 Msa0121320:CDS
GTTGCTAGTATTAATAGATT+TGG 0.315573 1_3:+47098277 None:intergenic
CAAAATGCTAGAAATCTTAC+AGG 0.329408 1_3:+47092590 None:intergenic
TTGGCACCACCCTCACTCTA+TGG 0.334195 1_3:+47097970 None:intergenic
TTGGTGCTTCATGTTTGATT+TGG 0.346186 1_3:+47098321 None:intergenic
TCTAATATTGTAAAGTGAAT+GGG 0.372424 1_3:+47092480 None:intergenic
TCCTTGTTGTGCAAAGGATT+AGG 0.373045 1_3:+47098251 None:intergenic
AAGAGTAAGATAGCTGTTAT+TGG 0.374604 1_3:-47094606 Msa0121320:CDS
CAAAATAGGCCCCTCACATT+GGG 0.379419 1_3:-47098060 Msa0121320:CDS
AATAAATGATGCAGGTGAAA+TGG 0.381383 1_3:-47096004 Msa0121320:intron
TTCTAATATTGTAAAGTGAA+TGG 0.395434 1_3:+47092479 None:intergenic
GACAAACCTCCTGCCATTGA+TGG 0.396424 1_3:+47095899 None:intergenic
CTATGGCTTGACATATCAAT+TGG 0.400815 1_3:+47097987 None:intergenic
CTTCATGTTTGATTTGGACT+AGG 0.402638 1_3:+47098327 None:intergenic
TTTGATTTCCTTGCTCCTAT+AGG 0.403404 1_3:-47092617 Msa0121320:three_prime_UTR
GTGAGGGTGGTGCCAAAGTT+AGG 0.408994 1_3:-47097963 Msa0121320:CDS
ATGAAGTTGAAAGGAGCATT+GGG 0.412118 1_3:-47094409 Msa0121320:CDS
CAGTGCAAGGAGGGACAGTA+AGG 0.415316 1_3:+47094327 None:intergenic
CTTCTATTCAGGAGTTGAAC+AGG 0.418113 1_3:+47092736 None:intergenic
CATGAAAGTGCAAAAGTAAA+CGG 0.418487 1_3:-47094630 Msa0121320:CDS
CATGAATTTGATTACACAAA+AGG 0.418746 1_3:-47098086 Msa0121320:CDS
AGAAGAGAGATACAACTCTA+TGG 0.455820 1_3:-47092718 Msa0121320:CDS
AATCTTACAGGACTGCCTAT+AGG 0.455969 1_3:+47092602 None:intergenic
ACGTTGGTATACAAAATGAA+TGG 0.462239 1_3:+47092553 None:intergenic
CCACCCAACTTGATTTCTGA+AGG 0.465681 1_3:+47094377 None:intergenic
GATCCTTCAGAAATCAAGTT+GGG 0.471464 1_3:-47094380 Msa0121320:CDS
ACTGTCCCTCCTTGCACTGA+AGG 0.477863 1_3:-47094323 Msa0121320:CDS
CGTTGGTATACAAAATGAAT+GGG 0.481088 1_3:+47092554 None:intergenic
CCTTCTGAACACACCATCAA+TGG 0.486540 1_3:-47095912 Msa0121320:CDS
CAAGTAGAAGATGATGAAAG+AGG 0.487662 1_3:+47098368 None:intergenic
GCAAAATAGGCCCCTCACAT+TGG 0.489393 1_3:-47098061 Msa0121320:CDS
ATGAAAGTGCAAAAGTAAAC+GGG 0.490283 1_3:-47094629 Msa0121320:CDS
GAATGGGCAACATGTAATGA+TGG 0.492565 1_3:-47098023 Msa0121320:CDS
AAGTGTTTCAAGAGGGCAGT+TGG 0.498514 1_3:-47094012 Msa0121320:CDS
TATATATAGAAAATAAATAG+TGG 0.498534 1_3:+47092671 None:intergenic
AATGAAGTTGAAAGGAGCAT+TGG 0.505433 1_3:-47094410 Msa0121320:CDS
GGGGTAAAATCAAGAAGGAA+TGG 0.508013 1_3:-47098040 Msa0121320:CDS
GGGTAAAATCAAGAAGGAAT+GGG 0.525371 1_3:-47098039 Msa0121320:CDS
GCTGGATCAATAAATATCAA+TGG 0.525902 1_3:-47095972 Msa0121320:CDS
AAATAGAGGTCATGATATTG+AGG 0.527354 1_3:-47097898 Msa0121320:intron
CTATTGTCCTTGTTGTGCAA+AGG 0.529830 1_3:+47098245 None:intergenic
CCATTGATGGTGTGTTCAGA+AGG 0.543813 1_3:+47095912 None:intergenic
AAGAAGTACTACAGATACAT+AGG 0.545677 1_3:-47094353 Msa0121320:CDS
GTGAAATGGAAGGAAGATGC+TGG 0.545944 1_3:-47095990 Msa0121320:CDS
CATGTTTGATTTGGACTAGG+AGG 0.546355 1_3:+47098330 None:intergenic
ACCTTGCTGAGAACACGATC+TGG 0.547703 1_3:+47094561 None:intergenic
AAGTAGAAGATGATGAAAGA+GGG 0.548892 1_3:+47098369 None:intergenic
CTAGTATTAATAGATTTGGA+AGG 0.563282 1_3:+47098281 None:intergenic
AGGACAATAGCACAAGAAGT+TGG 0.564319 1_3:-47098232 Msa0121320:intron
CTAATATTGTAAAGTGAATG+GGG 0.564517 1_3:+47092481 None:intergenic
TGATCCTTCAGAAATCAAGT+TGG 0.568562 1_3:-47094381 Msa0121320:CDS
CAAAGTTAGGAAAATTAAAG+AGG 0.570259 1_3:-47097950 Msa0121320:CDS
AATTATTGTACTTATATGTG+TGG 0.570582 1_3:+47092522 None:intergenic
AATGGGCAACATGTAATGAT+GGG 0.583902 1_3:-47098022 Msa0121320:CDS
TCCTAATCCTTTGCACAACA+AGG 0.587202 1_3:-47098252 Msa0121320:CDS
CTGAACACACCATCAATGGC+AGG 0.589619 1_3:-47095908 Msa0121320:CDS
CAAATGACACCTTCAGTGCA+AGG 0.595109 1_3:+47094314 None:intergenic
AATGATGCAGGTGAAATGGA+AGG 0.596654 1_3:-47096000 Msa0121320:intron
CATGGACCATGTGTAGCTCA+AGG 0.603832 1_3:+47094649 None:intergenic
ACCAGATCGTGTTCTCAGCA+AGG 0.606154 1_3:-47094562 Msa0121320:intron
TTCAACTTCATTATCCACCA+TGG 0.609479 1_3:+47094421 None:intergenic
TGACACCTTCAGTGCAAGGA+GGG 0.610217 1_3:+47094318 None:intergenic
ACTCTATGGCCCAAAACGAA+AGG 0.610963 1_3:-47092704 Msa0121320:CDS
TGGTGGATAATGAAGTTGAA+AGG 0.612709 1_3:-47094418 Msa0121320:CDS
AGTGCAAGGAGGGACAGTAA+GGG 0.619780 1_3:+47094328 None:intergenic
CAGATAAGAAGTGTTTCAAG+AGG 0.624399 1_3:-47094020 Msa0121320:CDS
TAATATTGTAAAGTGAATGG+GGG 0.624696 1_3:+47092482 None:intergenic
GTCAAGCCATAGAGTGAGGG+TGG 0.624857 1_3:-47097976 Msa0121320:CDS
ATATGTCAAGCCATAGAGTG+AGG 0.627999 1_3:-47097980 Msa0121320:CDS
CAGGACTGCCTATAGGAGCA+AGG 0.631491 1_3:+47092609 None:intergenic
ATGTGTGGTTCTAATAACGT+TGG 0.632659 1_3:+47092537 None:intergenic
ACATTGGGGTAAAATCAAGA+AGG 0.636121 1_3:-47098045 Msa0121320:CDS
TGAAGTTGAAAGGAGCATTG+GGG 0.638978 1_3:-47094408 Msa0121320:CDS
AGATAAGAAGTGTTTCAAGA+GGG 0.642367 1_3:-47094019 Msa0121320:CDS
AAAATAGGCCCCTCACATTG+GGG 0.652089 1_3:-47098059 Msa0121320:CDS
CCTTCAGAAATCAAGTTGGG+TGG 0.652820 1_3:-47094377 Msa0121320:CDS
AATATTGTAAAGTGAATGGG+GGG 0.658187 1_3:+47092483 None:intergenic
TATGTCAAGCCATAGAGTGA+GGG 0.675192 1_3:-47097979 Msa0121320:CDS
AACACACCATCAATGGCAGG+AGG 0.695820 1_3:-47095905 Msa0121320:intron
ATGACACCTTCAGTGCAAGG+AGG 0.714310 1_3:+47094317 None:intergenic
GTATGACCTTGAGCTACACA+TGG 0.714569 1_3:-47094655 Msa0121320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAACATCAAATTTT+TGG - chr1_3:47093249-47093268 Msa0121320:intron 10.0%
!! TCAATATATATTTATGTATT+TGG - chr1_3:47093965-47093984 Msa0121320:intron 10.0%
!!! TTTTTGTTTTGAAAAATAAA+TGG - chr1_3:47096084-47096103 Msa0121320:intron 10.0%
!!! AAATTTTAAATATTGCAAAT+GGG - chr1_3:47096128-47096147 Msa0121320:intron 10.0%
!!! AAATTAATTTTTAAATTCCT+AGG + chr1_3:47096175-47096194 None:intergenic 10.0%
!!! TTATATTGTTTTAATTTCTT+TGG + chr1_3:47096372-47096391 None:intergenic 10.0%
!!! AGTAATTTTTCTTTTTTTAA+AGG - chr1_3:47096919-47096938 Msa0121320:intron 10.0%
!!! GTAATTTTTCTTTTTTTAAA+GGG - chr1_3:47096920-47096939 Msa0121320:intron 10.0%
!! AAACAATTTATATATAGATA+GGG - chr1_3:47097151-47097170 Msa0121320:intron 10.0%
!!! ATAAACCTATATTTTTTAAA+AGG - chr1_3:47097356-47097375 Msa0121320:intron 10.0%
!! TATATATAGAAAATAAATAG+TGG + chr1_3:47098211-47098230 None:intergenic 10.0%
!! TCTATTGTTTAAATATTGTA+TGG - chr1_3:47093149-47093168 Msa0121320:intron 15.0%
!! TATATCTTAGTAGAATAATA+TGG + chr1_3:47093378-47093397 None:intergenic 15.0%
!!! GATATATTTTTATAAAGTGA+TGG - chr1_3:47093744-47093763 Msa0121320:intron 15.0%
!! TCCAAAAATTTCTTATAAAT+AGG - chr1_3:47094024-47094043 Msa0121320:intron 15.0%
!!! TCCTATTTATAAGAAATTTT+TGG + chr1_3:47094028-47094047 None:intergenic 15.0%
!!! TTATTTCTTCTTTTAAAACT+TGG + chr1_3:47094181-47094200 None:intergenic 15.0%
!! TCTATAAATCATAGTTAAAA+TGG + chr1_3:47094312-47094331 None:intergenic 15.0%
!! ATAGAATTAGAAATGAATAT+TGG - chr1_3:47094644-47094663 Msa0121320:CDS 15.0%
!!! AAATTTTCACATTAAAAATC+AGG + chr1_3:47095033-47095052 None:intergenic 15.0%
!!! TATTTGTTAAAAAAAGTGTT+TGG - chr1_3:47095264-47095283 Msa0121320:intron 15.0%
!!! TTGCTATTGAAAAATTATAA+GGG + chr1_3:47095540-47095559 None:intergenic 15.0%
!!! TTTGCTATTGAAAAATTATA+AGG + chr1_3:47095541-47095560 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr1_3:47095657-47095676 None:intergenic 15.0%
!!! AACTTATTTTTTCAGAAAAA+TGG - chr1_3:47095889-47095908 Msa0121320:intron 15.0%
!!! CAAATTTTAAATATTGCAAA+TGG - chr1_3:47096127-47096146 Msa0121320:intron 15.0%
!! GGTATTAAAATAATATATGT+TGG + chr1_3:47096154-47096173 None:intergenic 15.0%
!!! CATATATTATTTTAATACCT+AGG - chr1_3:47096155-47096174 Msa0121320:intron 15.0%
!!! TTTTCTTGATCTTAAATATT+AGG - chr1_3:47096202-47096221 Msa0121320:intron 15.0%
!!! AAATTTAATTTTAGTCATGA+TGG - chr1_3:47096671-47096690 Msa0121320:intron 15.0%
!!! TTCAAACATTTATCTTTTAT+TGG + chr1_3:47097091-47097110 None:intergenic 15.0%
!! GAAACAATTTATATATAGAT+AGG - chr1_3:47097150-47097169 Msa0121320:intron 15.0%
!! AACAATTTATATATAGATAG+GGG - chr1_3:47097152-47097171 Msa0121320:intron 15.0%
!!! ATTAGCCTTTTAAAAAATAT+AGG + chr1_3:47097364-47097383 None:intergenic 15.0%
!!! TATATTTTTTAAAAGGCTAA+TGG - chr1_3:47097363-47097382 Msa0121320:intron 15.0%
!!! ATATTTTTTAAAAGGCTAAT+GGG - chr1_3:47097364-47097383 Msa0121320:intron 15.0%
!!! AATTATTACTTGCTTTTTTT+TGG - chr1_3:47098055-47098074 Msa0121320:CDS 15.0%
!! CTTAATGAATGAGAAAAATA+AGG + chr1_3:47092483-47092502 None:intergenic 20.0%
!!! GGAATTTTTTGAGTATTTTT+TGG + chr1_3:47092580-47092599 None:intergenic 20.0%
!! TTGAAATACTCAAAGATTAA+TGG + chr1_3:47092706-47092725 None:intergenic 20.0%
!!! ATTTTTAATAGTAGCATTGT+GGG + chr1_3:47092965-47092984 None:intergenic 20.0%
!!! TATTTTTAATAGTAGCATTG+TGG + chr1_3:47092966-47092985 None:intergenic 20.0%
!! AATGCTACTATTAAAAATAG+AGG - chr1_3:47092967-47092986 Msa0121320:intron 20.0%
!! CATTTCTATAAGATATATCT+GGG + chr1_3:47093229-47093248 None:intergenic 20.0%
!! TCATTTCTATAAGATATATC+TGG + chr1_3:47093230-47093249 None:intergenic 20.0%
!!! TTTTTATAAATAAGACCGAA+TGG + chr1_3:47093936-47093955 None:intergenic 20.0%
!! TCAATAAAAATTGATGTACT+TGG + chr1_3:47094004-47094023 None:intergenic 20.0%
!! AATTAGAAATGAATATTGGT+AGG - chr1_3:47094648-47094667 Msa0121320:CDS 20.0%
!! AAAATCTATGCATAATATCA+TGG - chr1_3:47095336-47095355 Msa0121320:intron 20.0%
!! AAATCTATGCATAATATCAT+GGG - chr1_3:47095337-47095356 Msa0121320:intron 20.0%
!! TGCTATTGAAAAATTATAAG+GGG + chr1_3:47095539-47095558 None:intergenic 20.0%
!!! ATTAGACATGTATTTTGAAA+CGG + chr1_3:47095598-47095617 None:intergenic 20.0%
!!! TATTTTTTTCAACTACAATG+AGG - chr1_3:47095847-47095866 Msa0121320:intron 20.0%
!!! TCAGAAAAATGGATTTTTAT+AGG - chr1_3:47095900-47095919 Msa0121320:intron 20.0%
!!! ATAATTTTCACTGACATTTA+GGG + chr1_3:47096035-47096054 None:intergenic 20.0%
!!! AATAATTTTCACTGACATTT+AGG + chr1_3:47096036-47096055 None:intergenic 20.0%
!!! ATTGGTCTAATGTATAAAAT+TGG - chr1_3:47096291-47096310 Msa0121320:intron 20.0%
!!! AGGTAACAATATTTTTTGTT+TGG - chr1_3:47096337-47096356 Msa0121320:intron 20.0%
!!! TTGTTTTAATTTCTTTGGTT+TGG + chr1_3:47096367-47096386 None:intergenic 20.0%
!! CTAAATAATCAAATTTGCAA+CGG - chr1_3:47096410-47096429 Msa0121320:intron 20.0%
!! CATTTGGACTATTAATAAAA+AGG - chr1_3:47096582-47096601 Msa0121320:intron 20.0%
!! TGATCTTCAATTAAGAAAAT+CGG - chr1_3:47096704-47096723 Msa0121320:intron 20.0%
!! AAGAAAAATTACTTACATCA+TGG + chr1_3:47096912-47096931 None:intergenic 20.0%
!! AAGTTATTATACTTACATCA+TGG + chr1_3:47096947-47096966 None:intergenic 20.0%
!!! AGTCCATTTCTTTTTTATTT+TGG - chr1_3:47097025-47097044 Msa0121320:intron 20.0%
!! GATCCAAAATAAAAAAGAAA+TGG + chr1_3:47097031-47097050 None:intergenic 20.0%
!!! CTTAAAATAAAGCATTTGAT+TGG + chr1_3:47097262-47097281 None:intergenic 20.0%
!!! AATGCTTTATTTTAAGCATT+TGG - chr1_3:47097266-47097285 Msa0121320:intron 20.0%
!! TGTTAGTACAAACTATAATT+AGG + chr1_3:47097297-47097316 None:intergenic 20.0%
!!! TCAATTTTAAACAACTTTGA+GGG + chr1_3:47097629-47097648 None:intergenic 20.0%
!!! ATCAATTTTAAACAACTTTG+AGG + chr1_3:47097630-47097649 None:intergenic 20.0%
!!! ACAATCATTTTTAACAACTT+TGG + chr1_3:47097709-47097728 None:intergenic 20.0%
!! ACTCGTTTATTAAATAAGTT+AGG + chr1_3:47097841-47097860 None:intergenic 20.0%
!! ACTTATTTAATAAACGAGTT+AGG - chr1_3:47097842-47097861 Msa0121320:intron 20.0%
!! ATTAATAACATTGAGCAATT+TGG - chr1_3:47097987-47098006 Msa0121320:CDS 20.0%
!! AATTATTGTACTTATATGTG+TGG + chr1_3:47098360-47098379 None:intergenic 20.0%
!! TCTAATATTGTAAAGTGAAT+GGG + chr1_3:47098402-47098421 None:intergenic 20.0%
!! TTCTAATATTGTAAAGTGAA+TGG + chr1_3:47098403-47098422 None:intergenic 20.0%
! TGAATGAGAAAAATAAGGAA+GGG + chr1_3:47092478-47092497 None:intergenic 25.0%
! ATGAATGAGAAAAATAAGGA+AGG + chr1_3:47092479-47092498 None:intergenic 25.0%
! CTAGTATTAATAGATTTGGA+AGG + chr1_3:47092601-47092620 None:intergenic 25.0%
! GTTGCTAGTATTAATAGATT+TGG + chr1_3:47092605-47092624 None:intergenic 25.0%
! CATGAATTTGATTACACAAA+AGG - chr1_3:47092793-47092812 Msa0121320:intron 25.0%
!!! CTCTTTAATTTTCCTAACTT+TGG + chr1_3:47092931-47092950 None:intergenic 25.0%
! CAAAGTTAGGAAAATTAAAG+AGG - chr1_3:47092929-47092948 Msa0121320:intron 25.0%
!! TTTTTAATAGTAGCATTGTG+GGG + chr1_3:47092964-47092983 None:intergenic 25.0%
!! GATGAAATGAATGATTTTCT+GGG + chr1_3:47093018-47093037 None:intergenic 25.0%
!! TGATGAAATGAATGATTTTC+TGG + chr1_3:47093019-47093038 None:intergenic 25.0%
! AAACCAGAGATTAAATATAC+GGG + chr1_3:47093201-47093220 None:intergenic 25.0%
! CAAACCAGAGATTAAATATA+CGG + chr1_3:47093202-47093221 None:intergenic 25.0%
! GATAATATATGAGATGATGT+TGG - chr1_3:47093407-47093426 Msa0121320:intron 25.0%
! ATTAGAATAGATAGTTGACT+TGG - chr1_3:47093543-47093562 Msa0121320:intron 25.0%
! ACAAAAAAAAAGTTAGAGAG+TGG - chr1_3:47093568-47093587 Msa0121320:intron 25.0%
! AAGTAATCTACTACTTCATA+TGG + chr1_3:47094051-47094070 None:intergenic 25.0%
! ATCGTTAACTAATAAGAGTA+CGG - chr1_3:47094088-47094107 Msa0121320:intron 25.0%
! TATTATGTATCTACTTGCAT+AGG - chr1_3:47094362-47094381 Msa0121320:CDS 25.0%
! ATTATGTATCTACTTGCATA+GGG - chr1_3:47094363-47094382 Msa0121320:CDS 25.0%
! ACTTAACATTAGGTTAATAC+TGG - chr1_3:47094673-47094692 Msa0121320:intron 25.0%
! CTCTTTATAATAAATGATGC+AGG - chr1_3:47094867-47094886 Msa0121320:intron 25.0%
! GGTGAAAAGATATGAATATT+TGG + chr1_3:47095012-47095031 None:intergenic 25.0%
!!! TTTTCCTTGTACACTTTTTT+TGG - chr1_3:47095089-47095108 Msa0121320:intron 25.0%
!! TGGAAATAATTTGTGTTTCT+CGG + chr1_3:47095206-47095225 None:intergenic 25.0%
!! AGGAATCATATTTTCATTCT+CGG + chr1_3:47095241-47095260 None:intergenic 25.0%
!!! ACTTTTTTTAACAAATAGCC+AGG + chr1_3:47095261-47095280 None:intergenic 25.0%
!! TTGTAACTTCTAATTTTCCT+AGG + chr1_3:47095306-47095325 None:intergenic 25.0%
!!! TTATACCTATGTTTGTTATG+AGG + chr1_3:47095458-47095477 None:intergenic 25.0%
! GCTATTGAAAAATTATAAGG+GGG + chr1_3:47095538-47095557 None:intergenic 25.0%
! GCAAATTACAAAAAAGTAGA+CGG - chr1_3:47095556-47095575 Msa0121320:intron 25.0%
! TCCTAAAATGAAAAGCTATT+AGG - chr1_3:47095805-47095824 Msa0121320:intron 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + chr1_3:47095809-47095828 None:intergenic 25.0%
! GTCAAAATACATAAAAACCA+TGG - chr1_3:47096441-47096460 Msa0121320:intron 25.0%
! AAAATACATAAAAACCATGG+TGG - chr1_3:47096444-47096463 Msa0121320:intron 25.0%
!! ACCTATTATTTAAGATCAGA+GGG + chr1_3:47096635-47096654 None:intergenic 25.0%
!! AACCTATTATTTAAGATCAG+AGG + chr1_3:47096636-47096655 None:intergenic 25.0%
! GATCTTCAATTAAGAAAATC+GGG - chr1_3:47096705-47096724 Msa0121320:intron 25.0%
! ATTCAGTGAATCAAAAAAAC+TGG + chr1_3:47096819-47096838 None:intergenic 25.0%
! AATTTATATATAGATAGGGG+TGG - chr1_3:47097155-47097174 Msa0121320:intron 25.0%
!!! GGTTTTAGTTTTTTTCAACT+AGG + chr1_3:47097222-47097241 None:intergenic 25.0%
!! AAAGCATTTGATTGGATAAT+AGG + chr1_3:47097254-47097273 None:intergenic 25.0%
! CAATAACAATAGAGAGAAAA+AGG + chr1_3:47097578-47097597 None:intergenic 25.0%
!! ATTGTTATTGTCCAATAAGA+AGG - chr1_3:47097588-47097607 Msa0121320:intron 25.0%
!! TTGTTATTGTCCAATAAGAA+GGG - chr1_3:47097589-47097608 Msa0121320:intron 25.0%
! TGTTATTAATGAATACTCCA+TGG + chr1_3:47097946-47097965 None:intergenic 25.0%
! TTAATAACATATAGAGACTG+TGG - chr1_3:47097957-47097976 Msa0121320:CDS 25.0%
!!! TGGTTTTGGAAATGAAAATT+TGG - chr1_3:47098007-47098026 Msa0121320:CDS 25.0%
! TACATATATATGTTTCAAGC+TGG + chr1_3:47098036-47098055 None:intergenic 25.0%
!!! TATTACTTGCTTTTTTTTGG+AGG - chr1_3:47098058-47098077 Msa0121320:CDS 25.0%
!! TATTTCATTCCTTTCGTTTT+GGG + chr1_3:47098187-47098206 None:intergenic 25.0%
! TAATATTGTAAAGTGAATGG+GGG + chr1_3:47098400-47098419 None:intergenic 25.0%
! CTAATATTGTAAAGTGAATG+GGG + chr1_3:47098401-47098420 None:intergenic 25.0%
AAGTAGAAGATGATGAAAGA+GGG + chr1_3:47092513-47092532 None:intergenic 30.0%
ATCTATTTACATTTGTGCAG+AGG - chr1_3:47092765-47092784 Msa0121320:intron 30.0%
TACACAAAAGGTAGCAAAAT+AGG - chr1_3:47092805-47092824 Msa0121320:intron 30.0%
AAATAGAGGTCATGATATTG+AGG - chr1_3:47092981-47093000 Msa0121320:intron 30.0%
AAACCCGTATATTTAATCTC+TGG - chr1_3:47093195-47093214 Msa0121320:intron 30.0%
TGTTATGTGAATAGTGCATA+TGG + chr1_3:47093348-47093367 None:intergenic 30.0%
!!! TGACTAGATGAGTTTTGTTT+TGG - chr1_3:47093509-47093528 Msa0121320:intron 30.0%
! CTGTAAAAAAGTGTACCATT+CGG - chr1_3:47093918-47093937 Msa0121320:intron 30.0%
GTGTGTTTATTAGAATGTGT+TGG + chr1_3:47094493-47094512 None:intergenic 30.0%
TCTAATAAACACACATGAAG+AGG - chr1_3:47094499-47094518 Msa0121320:intron 30.0%
CTAATAAACACACATGAAGA+GGG - chr1_3:47094500-47094519 Msa0121320:intron 30.0%
TAATAAACACACATGAAGAG+GGG - chr1_3:47094501-47094520 Msa0121320:intron 30.0%
TTGGTAGGTAACTTAACATT+AGG - chr1_3:47094663-47094682 Msa0121320:intron 30.0%
AAAGATATGGTGTACTTTGA+AGG + chr1_3:47094720-47094739 None:intergenic 30.0%
AGCATTCACAACTAAAGATA+TGG + chr1_3:47094733-47094752 None:intergenic 30.0%
AACAACCAGATTTACACAAT+GGG + chr1_3:47094778-47094797 None:intergenic 30.0%
AATAAATGATGCAGGTGAAA+TGG - chr1_3:47094875-47094894 Msa0121320:intron 30.0%
GCTGGATCAATAAATATCAA+TGG - chr1_3:47094907-47094926 Msa0121320:intron 30.0%
! TTTTTCTGCATCAATGTCAT+TGG - chr1_3:47094938-47094957 Msa0121320:intron 30.0%
GAGAAACACAAATTATTTCC+AGG - chr1_3:47095205-47095224 Msa0121320:intron 30.0%
GAGAATGAAAATATGATTCC+TGG - chr1_3:47095240-47095259 Msa0121320:intron 30.0%
GCAAATAAATTGACATTCCT+AGG - chr1_3:47095286-47095305 Msa0121320:intron 30.0%
CGTTACTTCTATTATTCCTA+TGG + chr1_3:47095398-47095417 None:intergenic 30.0%
TTCCTAGATATAAATATCCC+TGG + chr1_3:47095421-47095440 None:intergenic 30.0%
AAGTTTAAGAATGACATTCC+CGG + chr1_3:47095505-47095524 None:intergenic 30.0%
! CATGAAAGTGCAAAAGTAAA+CGG - chr1_3:47096249-47096268 Msa0121320:intron 30.0%
! ATGAAAGTGCAAAAGTAAAC+GGG - chr1_3:47096250-47096269 Msa0121320:intron 30.0%
AAGAGTAAGATAGCTGTTAT+TGG - chr1_3:47096273-47096292 Msa0121320:intron 30.0%
!! AAGAAGTACTACAGATACAT+AGG - chr1_3:47096526-47096545 Msa0121320:intron 30.0%
TCCCTCTGATCTTAAATAAT+AGG - chr1_3:47096631-47096650 Msa0121320:intron 30.0%
!! AGATAAGAAGTGTTTCAAGA+GGG - chr1_3:47096860-47096879 Msa0121320:intron 30.0%
!!! CTAGCACATTTATTTTGTAG+AGG - chr1_3:47097493-47097512 Msa0121320:intron 30.0%
!!! CTTTTTTTCTCCCTTCTTAT+TGG + chr1_3:47097602-47097621 None:intergenic 30.0%
!! AACTTTGGTGTATTTTGTAG+AGG + chr1_3:47097694-47097713 None:intergenic 30.0%
TATATAATTACACGCCTGAT+AGG - chr1_3:47097764-47097783 Msa0121320:intron 30.0%
AAAACTTTACTAGACCTATC+AGG + chr1_3:47097781-47097800 None:intergenic 30.0%
! TTAAGCTTTCTAAAAAGGTC+AGG + chr1_3:47097817-47097836 None:intergenic 30.0%
! TAGGCTTAAGCTTTCTAAAA+AGG + chr1_3:47097822-47097841 None:intergenic 30.0%
!! AACATTGAGCAATTTGGTTT+TGG - chr1_3:47097993-47098012 Msa0121320:CDS 30.0%
! CTATTTCATTCCTTTCGTTT+TGG + chr1_3:47098188-47098207 None:intergenic 30.0%
CAAAATGCTAGAAATCTTAC+AGG + chr1_3:47098292-47098311 None:intergenic 30.0%
CGTTGGTATACAAAATGAAT+GGG + chr1_3:47098328-47098347 None:intergenic 30.0%
ACGTTGGTATACAAAATGAA+TGG + chr1_3:47098329-47098348 None:intergenic 30.0%
AATATTGTAAAGTGAATGGG+GGG + chr1_3:47098399-47098418 None:intergenic 30.0%
CAAGTAGAAGATGATGAAAG+AGG + chr1_3:47092514-47092533 None:intergenic 35.0%
!! CTTCATGTTTGATTTGGACT+AGG + chr1_3:47092555-47092574 None:intergenic 35.0%
! TTGGTGCTTCATGTTTGATT+TGG + chr1_3:47092561-47092580 None:intergenic 35.0%
! TTGATTTTACCCCAATGTGA+GGG + chr1_3:47092832-47092851 None:intergenic 35.0%
ACATTGGGGTAAAATCAAGA+AGG - chr1_3:47092834-47092853 Msa0121320:intron 35.0%
GGGTAAAATCAAGAAGGAAT+GGG - chr1_3:47092840-47092859 Msa0121320:intron 35.0%
AATGGGCAACATGTAATGAT+GGG - chr1_3:47092857-47092876 Msa0121320:intron 35.0%
CTATGGCTTGACATATCAAT+TGG + chr1_3:47092895-47092914 None:intergenic 35.0%
TATGTGAATAGTGCATATGG+TGG + chr1_3:47093345-47093364 None:intergenic 35.0%
TGCTAGCTGCAAACTATTAA+AGG + chr1_3:47093595-47093614 None:intergenic 35.0%
AAGTCAAAAAACCACCGATA+GGG + chr1_3:47093639-47093658 None:intergenic 35.0%
AAAGTCAAAAAACCACCGAT+AGG + chr1_3:47093640-47093659 None:intergenic 35.0%
! TTGACTTTTTGTAACGTGTG+TGG - chr1_3:47093652-47093671 Msa0121320:intron 35.0%
TAAAAACGCACACAAACAAG+TGG - chr1_3:47094224-47094243 Msa0121320:intron 35.0%
TTAGCCAAACAACATAACTG+AGG + chr1_3:47094267-47094286 None:intergenic 35.0%
AATAAACACACATGAAGAGG+GGG - chr1_3:47094502-47094521 Msa0121320:intron 35.0%
!! GGGAAGAAATATGTTGGTTT+AGG - chr1_3:47094522-47094541 Msa0121320:intron 35.0%
!! TGTTGGTTTAGGTTCAATCT+AGG - chr1_3:47094533-47094552 Msa0121320:intron 35.0%
CTTTAGTTGTGAATGCTCTT+AGG - chr1_3:47094736-47094755 Msa0121320:intron 35.0%
TCTTAGGTGAATTGTTACGT+AGG - chr1_3:47094752-47094771 Msa0121320:intron 35.0%
CAACAACCAGATTTACACAA+TGG + chr1_3:47094779-47094798 None:intergenic 35.0%
CAGATGAATATTACAGTAGC+TGG - chr1_3:47094815-47094834 Msa0121320:intron 35.0%
!!! TCCTTGTACACTTTTTTTGG+TGG - chr1_3:47095092-47095111 Msa0121320:intron 35.0%
! ACCACCAAAAAAAGTGTACA+AGG + chr1_3:47095096-47095115 None:intergenic 35.0%
!! TGGTGGTGTCTAATATCTTT+TGG - chr1_3:47095109-47095128 Msa0121320:intron 35.0%
! TGGTGTCTAATATCTTTTGG+TGG - chr1_3:47095112-47095131 Msa0121320:intron 35.0%
ATTCTCGGATAAGTTATTCC+TGG + chr1_3:47095226-47095245 None:intergenic 35.0%
ACATTCCCACTTTCTTACAT+GGG - chr1_3:47095365-47095384 Msa0121320:intron 35.0%
TTACTCCCATGTAAGAAAGT+GGG + chr1_3:47095373-47095392 None:intergenic 35.0%
TTTACTCCCATGTAAGAAAG+TGG + chr1_3:47095374-47095393 None:intergenic 35.0%
TTACATGGGAGTAAATCCAT+AGG - chr1_3:47095379-47095398 Msa0121320:intron 35.0%
GAATAATAGAAGTAACGCCA+GGG - chr1_3:47095401-47095420 Msa0121320:intron 35.0%
CTCAACCTCATAACAAACAT+AGG - chr1_3:47095450-47095469 Msa0121320:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr1_3:47095594-47095613 None:intergenic 35.0%
!!! AGACATGTATTTTGAAACGG+AGG + chr1_3:47095595-47095614 None:intergenic 35.0%
!! CGTTTACTTTTGCACTTTCA+TGG + chr1_3:47096251-47096270 None:intergenic 35.0%
TTCAACTTCATTATCCACCA+TGG + chr1_3:47096461-47096480 None:intergenic 35.0%
! TGGTGGATAATGAAGTTGAA+AGG - chr1_3:47096461-47096480 Msa0121320:intron 35.0%
! AATGAAGTTGAAAGGAGCAT+TGG - chr1_3:47096469-47096488 Msa0121320:intron 35.0%
!! ATGAAGTTGAAAGGAGCATT+GGG - chr1_3:47096470-47096489 Msa0121320:intron 35.0%
TGATCCTTCAGAAATCAAGT+TGG - chr1_3:47096498-47096517 Msa0121320:intron 35.0%
GATCCTTCAGAAATCAAGTT+GGG - chr1_3:47096499-47096518 Msa0121320:intron 35.0%
GTATATAACTAACGTGCAGA+CGG + chr1_3:47096750-47096769 None:intergenic 35.0%
!! CAGATAAGAAGTGTTTCAAG+AGG - chr1_3:47096859-47096878 Msa0121320:intron 35.0%
TATATAGATAGGGGTGGAAT+AGG - chr1_3:47097161-47097180 Msa0121320:intron 35.0%
TGACCTATTGAATCAAAACC+CGG + chr1_3:47097197-47097216 None:intergenic 35.0%
TTGGATAATAGGTCAGACTT+AGG + chr1_3:47097243-47097262 None:intergenic 35.0%
ACTAATAAAGTGGGGGAAAA+TGG + chr1_3:47097418-47097437 None:intergenic 35.0%
AACGCACACACTAATAAAGT+GGG + chr1_3:47097427-47097446 None:intergenic 35.0%
AAACGCACACACTAATAAAG+TGG + chr1_3:47097428-47097447 None:intergenic 35.0%
CTATATATAGAGGTCGGAAT+AGG + chr1_3:47097920-47097939 None:intergenic 35.0%
TGGTCTCTATATATAGAGGT+CGG + chr1_3:47097926-47097945 None:intergenic 35.0%
ACCTCTATATATAGAGACCA+TGG - chr1_3:47097926-47097945 Msa0121320:CDS 35.0%
TCCATGGTCTCTATATATAG+AGG + chr1_3:47097930-47097949 None:intergenic 35.0%
CTTGTGAACCACTCTATATA+TGG - chr1_3:47098096-47098115 Msa0121320:CDS 35.0%
GTTGTATCTCTCTTCTATTC+AGG + chr1_3:47098157-47098176 None:intergenic 35.0%
AGAAGAGAGATACAACTCTA+TGG - chr1_3:47098161-47098180 Msa0121320:intron 35.0%
! TTTGATTTCCTTGCTCCTAT+AGG - chr1_3:47098262-47098281 Msa0121320:CDS 35.0%
!! ATGTGTGGTTCTAATAACGT+TGG + chr1_3:47098345-47098364 None:intergenic 35.0%
!! CATGTTTGATTTGGACTAGG+AGG + chr1_3:47092552-47092571 None:intergenic 40.0%
TCCTAATCCTTTGCACAACA+AGG - chr1_3:47092627-47092646 Msa0121320:three_prime_UTR 40.0%
! TCCTTGTTGTGCAAAGGATT+AGG + chr1_3:47092631-47092650 None:intergenic 40.0%
! CTATTGTCCTTGTTGTGCAA+AGG + chr1_3:47092637-47092656 None:intergenic 40.0%
AGGACAATAGCACAAGAAGT+TGG - chr1_3:47092647-47092666 Msa0121320:three_prime_UTR 40.0%
! TGATTTTACCCCAATGTGAG+GGG + chr1_3:47092831-47092850 None:intergenic 40.0%
! CTTGATTTTACCCCAATGTG+AGG + chr1_3:47092833-47092852 None:intergenic 40.0%
GGGGTAAAATCAAGAAGGAA+TGG - chr1_3:47092839-47092858 Msa0121320:intron 40.0%
GAATGGGCAACATGTAATGA+TGG - chr1_3:47092856-47092875 Msa0121320:intron 40.0%
ATATGTCAAGCCATAGAGTG+AGG - chr1_3:47092899-47092918 Msa0121320:intron 40.0%
TATGTCAAGCCATAGAGTGA+GGG - chr1_3:47092900-47092919 Msa0121320:intron 40.0%
ACACAAACAAGTGGATGAGT+GGG - chr1_3:47094233-47094252 Msa0121320:intron 40.0%
TGAGCCTCAGTTATGTTGTT+TGG - chr1_3:47094260-47094279 Msa0121320:intron 40.0%
AAGAGGGGGAAGAAATATGT+TGG - chr1_3:47094516-47094535 Msa0121320:intron 40.0%
GTTGCTACAGTCTAGTAGTT+TGG + chr1_3:47094583-47094602 None:intergenic 40.0%
AATGATGCAGGTGAAATGGA+AGG - chr1_3:47094879-47094898 Msa0121320:intron 40.0%
CACATTCCCACTTTCTTACA+TGG - chr1_3:47095364-47095383 Msa0121320:intron 40.0%
GGAATAATAGAAGTAACGCC+AGG - chr1_3:47095400-47095419 Msa0121320:intron 40.0%
CGCCAGGGATATTTATATCT+AGG - chr1_3:47095416-47095435 Msa0121320:intron 40.0%
ATTCCCTAGCCATGTATTTC+CGG - chr1_3:47095483-47095502 Msa0121320:intron 40.0%
ATGACATTCCCGGAAATACA+TGG + chr1_3:47095495-47095514 None:intergenic 40.0%
!! TGAAGTTGAAAGGAGCATTG+GGG - chr1_3:47096471-47096490 Msa0121320:intron 40.0%
!!! GGGTTTTGATTCAATAGGTC+AGG - chr1_3:47097196-47097215 Msa0121320:intron 40.0%
ACGCACACACTAATAAAGTG+GGG + chr1_3:47097426-47097445 None:intergenic 40.0%
CTTCTATTCAGGAGTTGAAC+AGG + chr1_3:47098146-47098165 None:intergenic 40.0%
AATCTTACAGGACTGCCTAT+AGG + chr1_3:47098280-47098299 None:intergenic 40.0%
CAAAATAGGCCCCTCACATT+GGG - chr1_3:47092819-47092838 Msa0121320:intron 45.0%
AAAATAGGCCCCTCACATTG+GGG - chr1_3:47092820-47092839 Msa0121320:intron 45.0%
CTTTGTCCCTAACTCCCTAT+CGG - chr1_3:47093622-47093641 Msa0121320:intron 45.0%
AAACCACCGATAGGGAGTTA+GGG + chr1_3:47093631-47093650 None:intergenic 45.0%
AAAACCACCGATAGGGAGTT+AGG + chr1_3:47093632-47093651 None:intergenic 45.0%
CACACAAACAAGTGGATGAG+TGG - chr1_3:47094232-47094251 Msa0121320:intron 45.0%
ACTACTAGACTGTAGCAACG+AGG - chr1_3:47094584-47094603 Msa0121320:CDS 45.0%
GTAGGCCCATTGTGTAAATC+TGG - chr1_3:47094770-47094789 Msa0121320:intron 45.0%
GTGAAATGGAAGGAAGATGC+TGG - chr1_3:47094889-47094908 Msa0121320:intron 45.0%
!! CCATTGATGGTGTGTTCAGA+AGG + chr1_3:47094970-47094989 None:intergenic 45.0%
CCTTCTGAACACACCATCAA+TGG - chr1_3:47094967-47094986 Msa0121320:intron 45.0%
TTCCCTAGCCATGTATTTCC+GGG - chr1_3:47095484-47095503 Msa0121320:intron 45.0%
TTCCCGGAAATACATGGCTA+GGG + chr1_3:47095489-47095508 None:intergenic 45.0%
ATTCCCGGAAATACATGGCT+AGG + chr1_3:47095490-47095509 None:intergenic 45.0%
GTATGACCTTGAGCTACACA+TGG - chr1_3:47096224-47096243 Msa0121320:intron 45.0%
CCACCCAACTTGATTTCTGA+AGG + chr1_3:47096505-47096524 None:intergenic 45.0%
!! CCTTCAGAAATCAAGTTGGG+TGG - chr1_3:47096502-47096521 Msa0121320:intron 45.0%
CAAATGACACCTTCAGTGCA+AGG + chr1_3:47096568-47096587 None:intergenic 45.0%
!! CTTGCACTGAAGGTGTCATT+TGG - chr1_3:47096566-47096585 Msa0121320:intron 45.0%
AAGTGTTTCAAGAGGGCAGT+TGG - chr1_3:47096867-47096886 Msa0121320:intron 45.0%
!!! GAGCCGGGTTTTGATTCAAT+AGG - chr1_3:47097191-47097210 Msa0121320:intron 45.0%
CGCACACACTAATAAAGTGG+GGG + chr1_3:47097425-47097444 None:intergenic 45.0%
TAGGTCAGACTGTTCGTCAA+GGG + chr1_3:47097901-47097920 None:intergenic 45.0%
ATAGGTCAGACTGTTCGTCA+AGG + chr1_3:47097902-47097921 None:intergenic 45.0%
GCATGCTGCCATATATAGAG+TGG + chr1_3:47098107-47098126 None:intergenic 45.0%
ACTCTATGGCCCAAAACGAA+AGG - chr1_3:47098175-47098194 Msa0121320:intron 45.0%
!! ATAAAATATACAATAAAATA+CGG - chr1_3:47094406-47094425 Msa0121320:CDS 5.0%
!!! AATTATTTTTATTTTTCTAT+TGG - chr1_3:47094439-47094458 Msa0121320:CDS 5.0%
!!! AAAATATTTTATCAAATAAA+AGG - chr1_3:47095738-47095757 Msa0121320:intron 5.0%
!!! AAAATAAATTTTATGTTAAA+AGG + chr1_3:47095991-47096010 None:intergenic 5.0%
!!! TTATTAACTTTTTTATAAAT+AGG + chr1_3:47097340-47097359 None:intergenic 5.0%
GCAAAATAGGCCCCTCACAT+TGG - chr1_3:47092818-47092837 Msa0121320:intron 50.0%
CTGAACACACCATCAATGGC+AGG - chr1_3:47094971-47094990 Msa0121320:intron 50.0%
AACACACCATCAATGGCAGG+AGG - chr1_3:47094974-47094993 Msa0121320:intron 50.0%
GACAAACCTCCTGCCATTGA+TGG + chr1_3:47094983-47095002 None:intergenic 50.0%
CATGGACCATGTGTAGCTCA+AGG + chr1_3:47096233-47096252 None:intergenic 50.0%
ACCAGATCGTGTTCTCAGCA+AGG - chr1_3:47096317-47096336 Msa0121320:intron 50.0%
ACCTTGCTGAGAACACGATC+TGG + chr1_3:47096321-47096340 None:intergenic 50.0%
AGTGCAAGGAGGGACAGTAA+GGG + chr1_3:47096554-47096573 None:intergenic 50.0%
TGACACCTTCAGTGCAAGGA+GGG + chr1_3:47096564-47096583 None:intergenic 50.0%
ATGACACCTTCAGTGCAAGG+AGG + chr1_3:47096565-47096584 None:intergenic 50.0%
TAGATAGGGGTGGAATAGGC+CGG - chr1_3:47097165-47097184 Msa0121320:intron 50.0%
GGCCTACTTAAAGTTCGGCT+CGG + chr1_3:47097868-47097887 None:intergenic 50.0%
GAGCCGAACTTTAAGTAGGC+CGG - chr1_3:47097867-47097886 Msa0121320:intron 50.0%
AGCCGAACTTTAAGTAGGCC+GGG - chr1_3:47097868-47097887 Msa0121320:intron 50.0%
GACCCGGCCTACTTAAAGTT+CGG + chr1_3:47097873-47097892 None:intergenic 50.0%
TTCGTCAAGGGTCTATGACC+CGG + chr1_3:47097889-47097908 None:intergenic 50.0%
GTCAAGCCATAGAGTGAGGG+TGG - chr1_3:47092903-47092922 Msa0121320:intron 55.0%
TTGGCACCACCCTCACTCTA+TGG + chr1_3:47092912-47092931 None:intergenic 55.0%
! GTGAGGGTGGTGCCAAAGTT+AGG - chr1_3:47092916-47092935 Msa0121320:intron 55.0%
TGTCCCTAACTCCCTATCGG+TGG - chr1_3:47093625-47093644 Msa0121320:intron 55.0%
CAGTGCAAGGAGGGACAGTA+AGG + chr1_3:47096555-47096574 None:intergenic 55.0%
ACTGTCCCTCCTTGCACTGA+AGG - chr1_3:47096556-47096575 Msa0121320:intron 55.0%
ACTAACGTGCAGACGGACAC+TGG + chr1_3:47096743-47096762 None:intergenic 55.0%
AGATAGGGGTGGAATAGGCC+GGG - chr1_3:47097166-47097185 Msa0121320:intron 55.0%
! AATCAAAACCCGGCTCGACC+CGG + chr1_3:47097187-47097206 None:intergenic 55.0%
GGCCGAGCCGAACTTTAAGT+AGG - chr1_3:47097863-47097882 Msa0121320:intron 55.0%
CAGGACTGCCTATAGGAGCA+AGG + chr1_3:47098273-47098292 None:intergenic 55.0%
TGGAATAGGCCGGGTCGAGC+CGG - chr1_3:47097175-47097194 Msa0121320:intron 65.0%
GGAATAGGCCGGGTCGAGCC+GGG - chr1_3:47097176-47097195 Msa0121320:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47092469 47098432 47092469 ID=Msa0121320;Name=Msa0121320
chr1_3 mRNA 47092469 47098432 47092469 ID=Msa0121320-mRNA-1;Parent=Msa0121320;Name=Msa0121320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=100|0.83|0.85|1|0.83|0.85|7|230|271
chr1_3 exon 47092469 47092779 47092469 ID=Msa0121320-mRNA-1:exon:14202;Parent=Msa0121320-mRNA-1
chr1_3 exon 47093986 47094039 47093986 ID=Msa0121320-mRNA-1:exon:14201;Parent=Msa0121320-mRNA-1
chr1_3 exon 47094322 47094462 47094322 ID=Msa0121320-mRNA-1:exon:14200;Parent=Msa0121320-mRNA-1
chr1_3 exon 47094563 47094677 47094563 ID=Msa0121320-mRNA-1:exon:14199;Parent=Msa0121320-mRNA-1
chr1_3 exon 47095906 47096012 47095906 ID=Msa0121320-mRNA-1:exon:14198;Parent=Msa0121320-mRNA-1
chr1_3 exon 47097899 47098116 47097899 ID=Msa0121320-mRNA-1:exon:14197;Parent=Msa0121320-mRNA-1
chr1_3 exon 47098233 47098432 47098233 ID=Msa0121320-mRNA-1:exon:14196;Parent=Msa0121320-mRNA-1
chr1_3 five_prime_UTR 47098333 47098432 47098333 ID=Msa0121320-mRNA-1:five_prime_utr;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47098233 47098332 47098233 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47097899 47098116 47097899 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47095906 47096012 47095906 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47094563 47094677 47094563 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47094322 47094462 47094322 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47093986 47094039 47093986 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 CDS 47092699 47092779 47092699 ID=Msa0121320-mRNA-1:cds;Parent=Msa0121320-mRNA-1
chr1_3 three_prime_UTR 47092469 47092698 47092469 ID=Msa0121320-mRNA-1:three_prime_utr;Parent=Msa0121320-mRNA-1
Gene Sequence

>Msa0121320

ATGAAGCACCAAAAAATACTCAAAAAATTCCTTCCAAATCTATTAATACTAGCAACTATCCTAATCCTTTGCACAACAAGGACAATAGCACAAGAAGTTGAGGATGAGCATGAATTTGATTACACAAAAGGTAGCAAAATAGGCCCCTCACATTGGGGTAAAATCAAGAAGGAATGGGCAACATGTAATGATGGGAAAATGCAATCTCCAATTGATATGTCAAGCCATAGAGTGAGGGTGGTGCCAAAGTTAGGAAAATTAAAGAGGCACTATAAGCCCCACAATGCTACTATTAAAAATAGAGGTCATGATATTGAGGTGAAATGGAAGGAAGATGCTGGATCAATAAATATCAATGGTACAGAGTTTTTTCTGCATCAATGTCATTGGCACGCACCTTCTGAACACACCATCAATGGCAGGAGGTATGACCTTGAGCTACACATGGTCCATGAAAGTGCAAAAGTAAACGGGAAGAGTAAGATAGCTGTTATTGGTCTAATGTATAAAATTGGTCGACCAGATCGTGTTCTCAGCAAGTTGTCAAAATACATAAAAACCATGGTGGATAATGAAGTTGAAAGGAGCATTGGGGTGTTTGATCCTTCAGAAATCAAGTTGGGTGGCAAGAAGTACTACAGATACATAGGCTCCCTTACTGTCCCTCCTTGCACTGAAGGTATAAGAAGTGTTTCAAGAGGGCAGTTGGAGTTACTAAGAGAAGCTGTCCATGATCATGCAGAGAAGAATGCAAGACCTGTTCAACTCCTGAATAGAAGAGAGATACAACTCTATGGCCCAAAACGAAAGGAATGA

Protein sequence

>Msa0121320

MKHQKILKKFLPNLLILATILILCTTRTIAQEVEDEHEFDYTKGSKIGPSHWGKIKKEWATCNDGKMQSPIDMSSHRVRVVPKLGKLKRHYKPHNATIKNRGHDIEVKWKEDAGSININGTEFFLHQCHWHAPSEHTINGRRYDLELHMVHESAKVNGKSKIAVIGLMYKIGRPDRVLSKLSKYIKTMVDNEVERSIGVFDPSEIKLGGKKYYRYIGSLTVPPCTEGIRSVSRGQLELLREAVHDHAEKNARPVQLLNRREIQLYGPKRKE*