AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177850 MtrunA17_Chr8g0348521 93.438 701 22 1 1 677 1 701 0.0 1321
Msa1177850 MtrunA17_Chr8g0348531 82.833 699 92 4 6 677 19 716 0.0 1063
Msa1177850 MtrunA17_Chr1g0202741 51.705 704 311 8 1 677 1 702 0.0 729
Msa1177850 MtrunA17_Chr1g0202731 51.705 704 311 7 1 677 6 707 0.0 721
Msa1177850 MtrunA17_Chr8g0349071 95.710 303 12 1 208 509 1 303 0.0 588
Msa1177850 MtrunA17_Chr2g0291481 32.558 688 386 17 44 675 73 738 2.99e-106 339
Msa1177850 MtrunA17_Chr4g0058571 32.568 697 402 17 13 662 30 705 2.17e-100 323
Msa1177850 MtrunA17_Chr8g0349061 94.531 128 7 0 1 128 1 128 5.92e-78 245
Msa1177850 MtrunA17_Chr8g0349081 96.694 121 4 0 557 677 1 121 3.11e-75 237
Msa1177850 MtrunA17_Chr4g0061441 30.000 210 106 7 239 421 473 668 8.94e-20 94.4
Msa1177850 MtrunA17_Chr8g0387591 29.808 208 114 6 244 422 559 763 1.22e-19 94.0
Msa1177850 MtrunA17_Chr8g0385411 27.273 220 121 7 244 430 520 733 1.24e-17 87.4
Msa1177850 MtrunA17_Chr3g0131401 26.818 220 122 8 244 430 541 754 5.41e-17 85.5
Msa1177850 MtrunA17_Chr3g0131381 26.512 215 117 6 244 422 534 743 7.95e-17 85.1
Msa1177850 MtrunA17_Chr2g0301511 28.230 209 117 7 244 422 548 753 1.39e-16 84.3
Msa1177850 MtrunA17_Chr1g0192121 25.561 223 128 7 235 422 500 719 7.19e-16 81.6
Msa1177850 MtrunA17_Chr7g0272591 24.171 211 125 6 244 422 524 731 5.87e-15 79.0
Msa1177850 MtrunA17_Chr3g0131361 25.877 228 121 7 244 431 522 741 4.51e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177850 AT1G01580.2 57.910 708 256 9 6 677 102 803 0.0 796
Msa1177850 AT1G01580.1 57.910 708 256 9 6 677 24 725 0.0 796
Msa1177850 AT1G01590.1 52.101 714 290 13 1 677 6 704 0.0 722
Msa1177850 AT1G23020.2 52.143 700 290 9 6 677 35 717 0.0 707
Msa1177850 AT1G23020.6 52.143 700 290 9 6 677 12 694 0.0 706
Msa1177850 AT1G23020.1 52.211 701 287 11 6 677 35 716 0.0 704
Msa1177850 AT1G23020.5 52.211 701 287 11 6 677 35 716 0.0 704
Msa1177850 AT1G23020.4 52.211 701 287 11 6 677 12 693 0.0 702
Msa1177850 AT1G23020.3 52.211 701 287 11 6 677 12 693 0.0 702
Msa1177850 AT1G23020.7 52.217 699 287 10 6 677 12 690 0.0 702
Msa1177850 AT5G23990.2 49.360 703 317 8 6 677 5 699 0.0 684
Msa1177850 AT5G23980.1 49.075 703 319 8 6 677 5 699 0.0 678
Msa1177850 AT5G23990.1 46.696 681 326 8 6 677 5 657 0.0 622
Msa1177850 AT5G23990.3 52.878 556 251 5 131 677 14 567 0.0 600
Msa1177850 AT5G50160.1 29.932 735 413 19 18 676 19 727 2.58e-103 331
Msa1177850 AT5G49730.1 31.456 728 421 21 8 675 27 736 7.77e-100 322
Msa1177850 AT5G49740.1 30.345 725 435 18 8 675 34 745 3.65e-98 318
Msa1177850 AT5G49740.3 30.175 686 419 16 8 646 34 706 1.51e-94 308
Msa1177850 AT5G49730.2 34.638 511 287 11 8 478 27 530 3.46e-92 296
Msa1177850 AT5G49740.2 34.051 511 292 11 8 478 34 539 9.92e-90 290
Msa1177850 AT5G50160.2 31.004 558 312 14 172 676 11 548 1.05e-85 280
Msa1177850 AT1G19230.1 29.762 252 141 6 237 457 536 782 1.79e-23 106
Msa1177850 AT1G19230.2 29.762 252 141 6 237 457 562 808 2.10e-23 106
Msa1177850 AT1G64060.1 30.342 234 128 8 244 448 565 792 1.12e-20 97.8
Msa1177850 AT4G25090.1 28.708 209 121 6 244 427 484 689 2.04e-20 96.7
Msa1177850 AT4G25090.2 28.708 209 121 6 244 427 472 677 2.63e-20 96.3
Msa1177850 AT5G47910.1 27.751 209 118 6 244 422 554 759 2.13e-18 90.5
Msa1177850 AT1G09090.2 29.148 223 121 8 234 422 465 684 4.03e-18 89.4
Msa1177850 AT5G51060.1 26.364 220 124 8 244 431 531 744 4.48e-17 86.3
Msa1177850 AT4G11230.1 29.268 205 104 7 279 465 597 778 1.29e-16 84.7
Msa1177850 AT5G07390.2 27.358 212 118 6 244 422 490 698 2.40e-16 83.6
Msa1177850 AT5G07390.1 27.358 212 118 6 244 422 522 730 2.60e-16 83.6
Msa1177850 AT3G45810.1 26.638 229 123 6 236 422 497 722 5.20e-12 69.7

Find 151 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATATTCTCGGATCCTTTA+AGG 0.086839 8_1:+10273871 Msa1177850:CDS
ATTGGTGGTGCTGTTGTTTA+TGG 0.155757 8_1:+10270116 Msa1177850:CDS
GATTTGATCCTACCAATTTC+TGG 0.166442 8_1:+10273588 Msa1177850:CDS
CCCTAGTTTCTACCTCTTCT+TGG 0.174450 8_1:+10272644 Msa1177850:CDS
AGTGTGGGAGTTCTTGTTTC+AGG 0.196177 8_1:+10274276 Msa1177850:CDS
TGTTACTTCTAATAGTAAAT+TGG 0.207270 8_1:+10273018 Msa1177850:CDS
GTTGCATCAAGTATCATATT+TGG 0.222234 8_1:+10271621 Msa1177850:CDS
AAGGCTGATCCTACCTATTT+TGG 0.222309 8_1:+10270210 Msa1177850:CDS
TGGGGATGAATTGGAGTATC+TGG 0.239412 8_1:-10273678 None:intergenic
TCATCTGTGCTACCAATATT+TGG 0.246300 8_1:+10271584 Msa1177850:CDS
CTATTAGAAGTAACAGTAAA+TGG 0.254634 8_1:-10273010 None:intergenic
TGTTCTTGAATGAAGAAATT+AGG 0.262375 8_1:-10273545 None:intergenic
TCATTAAATGTGGAGGAAAT+TGG 0.269799 8_1:+10273062 Msa1177850:CDS
CAAAGTTGGAGTATCAAATT+TGG 0.274753 8_1:+10272458 Msa1177850:CDS
TTTCAAGTGTAGCTGTCTTA+TGG 0.275222 8_1:+10273937 Msa1177850:CDS
TTGGTGGTGCTGTTGTTTAT+GGG 0.276486 8_1:+10270117 Msa1177850:CDS
TATACCTTGTGCACCAAAAT+AGG 0.277983 8_1:-10270223 None:intergenic
GTTGCATCCATTTGCTCATC+TGG 0.279872 8_1:+10274321 Msa1177850:CDS
ATGTTTAGGAACGCCCTTAA+AGG 0.285074 8_1:-10273885 None:intergenic
AGATGTAGACCTTAGGTAAT+TGG 0.289379 8_1:-10273173 None:intergenic
ATCATCTTCCTAATTATAAT+CGG 0.294324 8_1:+10273801 Msa1177850:CDS
ATTTATTGCAGATGTTGATA+TGG 0.295928 8_1:+10272433 Msa1177850:intron
TTGGCTTAAGCCATAGAGTT+TGG 0.301650 8_1:-10273698 None:intergenic
TTGCAACCATTCCCAAAATT+AGG 0.301865 8_1:+10272520 Msa1177850:CDS
TGTTCATTGCACTTCTTGTT+TGG 0.302432 8_1:+10270669 Msa1177850:CDS
ACTTCCTGCCTCATTTGTTT+AGG 0.308433 8_1:-10274300 None:intergenic
GGAGAGATATCTTTGCTTGC+TGG 0.309354 8_1:+10272483 Msa1177850:CDS
TCAATCTATAATAAGGTTAT+TGG 0.310440 8_1:+10270098 Msa1177850:CDS
AACCGTCCAATGCTTGTAAA+AGG 0.316685 8_1:+10270602 Msa1177850:CDS
ATGTCACATGTGCCAGAAAT+TGG 0.325741 8_1:-10273600 None:intergenic
TGTAGAACTCAACTTCTCTA+AGG 0.326624 8_1:+10272743 Msa1177850:CDS
TGGCTTAAGCCATAGAGTTT+GGG 0.327218 8_1:-10273697 None:intergenic
TCCTAAGGTTCTTACAATCT+AGG 0.329173 8_1:+10272676 Msa1177850:CDS
TAATGACCCCGATTATAATT+AGG 0.337889 8_1:-10273809 None:intergenic
GTGAGGCTCAATCTATAATA+AGG 0.341776 8_1:+10270091 Msa1177850:CDS
AGTCTTGTTAATAGCTACTT+TGG 0.343222 8_1:+10270396 Msa1177850:CDS
CAAATTTGATACTCCAACTT+TGG 0.350831 8_1:-10272457 None:intergenic
ATATCTGTTGAAGGTCCTTA+TGG 0.351254 8_1:+10273139 Msa1177850:CDS
AGTTGTATAGTGTGGGAATA+TGG 0.354213 8_1:+10271504 Msa1177850:CDS
GCTTGCTGGTTTGTTCTTGT+GGG 0.356226 8_1:+10272497 Msa1177850:CDS
ATTGGTTCATCGGATGGATT+TGG 0.364051 8_1:-10273717 None:intergenic
CAATTCATCCCCAAACTCTA+TGG 0.364176 8_1:+10273688 Msa1177850:CDS
GCTATTAACAAGACTGGAAA+AGG 0.367862 8_1:-10270388 None:intergenic
CTTTCAAATCCTTCGCCTAT+CGG 0.368684 8_1:+10273106 Msa1177850:CDS
TGCTTGCTGGTTTGTTCTTG+TGG 0.371299 8_1:+10272496 Msa1177850:CDS
GTCTTGTTAATAGCTACTTT+GGG 0.378957 8_1:+10270397 Msa1177850:CDS
AATATTCTCGGATCCTTTAA+GGG 0.379920 8_1:+10273872 Msa1177850:CDS
ATCTAGGTGCGGTGTTCGTT+TGG 0.380156 8_1:+10272692 Msa1177850:CDS
GTTAGATTGAAAGTATTTGT+AGG 0.381101 8_1:-10270165 None:intergenic
GGAATATGGTTAGGTCTTGT+TGG 0.389598 8_1:+10271518 Msa1177850:CDS
GAAGAAATTAGGACAATGTT+TGG 0.390489 8_1:-10273534 None:intergenic
GAAGCCACCAATGTGCATTA+TGG 0.392459 8_1:+10274089 Msa1177850:CDS
CACATATTACTAGCATGTTT+AGG 0.401415 8_1:-10273899 None:intergenic
CATAGAGTTTGGGGATGAAT+TGG 0.401457 8_1:-10273687 None:intergenic
CCAAACACTTGGCTTTGGCT+TGG 0.403131 8_1:+10273756 Msa1177850:CDS
TAGGTCCAAACACTTGGCTT+TGG 0.411996 8_1:+10273751 Msa1177850:CDS
TTTGCACAATCAGTCGTAAT+GGG 0.416566 8_1:+10270555 Msa1177850:intron
TCTTGTTGGGAACATATGTT+TGG 0.419914 8_1:+10271532 Msa1177850:CDS
TCATCTTCCTAATTATAATC+GGG 0.424758 8_1:+10273802 Msa1177850:CDS
GGACCTAACATAGCATGTAT+TGG 0.425959 8_1:-10273735 None:intergenic
GAACCAATACATGCTATGTT+AGG 0.426876 8_1:+10273732 Msa1177850:CDS
CCAAGCCAAAGCCAAGTGTT+TGG 0.427284 8_1:-10273756 None:intergenic
TTTATGAACATTACACTTGT+GGG 0.427345 8_1:-10272956 None:intergenic
TCAGAAGTGAGGCCAAATAT+TGG 0.428860 8_1:-10271596 None:intergenic
GAATTTGTTACATCATCCAT+TGG 0.432515 8_1:+10271681 Msa1177850:CDS
GCTTCAACAAGGGACTGATA+TGG 0.444092 8_1:-10274071 None:intergenic
ATCAAGTATCATATTTGGCT+TGG 0.445757 8_1:+10271626 Msa1177850:CDS
AGCGAAACAGATTCAGAACT+TGG 0.447743 8_1:+10273980 Msa1177850:CDS
GCGAAGGATTTGAAAGCAAC+TGG 0.456692 8_1:-10273099 None:intergenic
TAATATTCAACTCCAAATTG+AGG 0.460431 8_1:+10273626 Msa1177850:CDS
GCATTATAAATCGTTGAACT+TGG 0.460573 8_1:-10274026 None:intergenic
AACTAAACCAGATGAGCAAA+TGG 0.468218 8_1:-10274328 None:intergenic
AAGCATTGGACGGTTCCATA+TGG 0.468549 8_1:-10270594 None:intergenic
AAAGTAGCTATTAACAAGAC+TGG 0.468699 8_1:-10270394 None:intergenic
GAATATGGTTAGGTCTTGTT+GGG 0.469125 8_1:+10271519 Msa1177850:CDS
GCAAGAGAAGTTGTATAGTG+TGG 0.469438 8_1:+10271496 Msa1177850:CDS
ACCTAGATTGTAAGAACCTT+AGG 0.470013 8_1:-10272677 None:intergenic
CGCCTTGGAATATCTGTTGA+AGG 0.470730 8_1:+10273130 Msa1177850:CDS
CTATGTTAGGTCCAAACACT+TGG 0.472681 8_1:+10273745 Msa1177850:CDS
CATAGCATGTATTGGTTCAT+CGG 0.476192 8_1:-10273727 None:intergenic
CACATTGGTGGCTTCAACAA+GGG 0.482039 8_1:-10274081 None:intergenic
AGACTGGAAAAGGGTACATA+AGG 0.483849 8_1:-10270378 None:intergenic
AATTTGTTACATCATCCATT+GGG 0.484395 8_1:+10271682 Msa1177850:CDS
GTGTGATGTATGCCTCAATT+TGG 0.484646 8_1:-10273638 None:intergenic
TATAGTGTGGGAATATGGTT+AGG 0.492943 8_1:+10271509 Msa1177850:CDS
TTGGTTGAAGCAGGTCCATA+AGG 0.493515 8_1:-10273154 None:intergenic
CATTGCAACTTTGATATGCT+TGG 0.494130 8_1:-10272983 None:intergenic
CTTAGGTAATTGGTTGAAGC+AGG 0.494748 8_1:-10273163 None:intergenic
CCTTCGCCTATCGGTCGCCT+TGG 0.496053 8_1:+10273115 Msa1177850:CDS
TAACACGAATGCAATATTCT+CGG 0.497622 8_1:+10273860 Msa1177850:CDS
ACCAAGAAGAGGTAGAAACT+AGG 0.499474 8_1:-10272645 None:intergenic
GTTGGAGTATCAAATTTGGC+TGG 0.503021 8_1:+10272462 Msa1177850:CDS
CCAAGAAGAGGTAGAAACTA+GGG 0.503705 8_1:-10272644 None:intergenic
TCTTGGTTGATCGTTTCCTA+AGG 0.507895 8_1:+10272661 Msa1177850:CDS
ATCTATAATAAGGTTATTGG+TGG 0.512827 8_1:+10270101 Msa1177850:CDS
AGAAACATGGGACAACCATA+TGG 0.513216 8_1:+10270579 Msa1177850:CDS
ATTTATGAACATTACACTTG+TGG 0.514646 8_1:-10272957 None:intergenic
GAAATAAAAGGGTCAAGTGT+GGG 0.514862 8_1:+10274261 Msa1177850:CDS
GCATGTATTGGTTCATCGGA+TGG 0.517956 8_1:-10273723 None:intergenic
ATATTTGGCCTCACTTCTGA+AGG 0.519844 8_1:+10271599 Msa1177850:CDS
CAAGAGAAGTTGTATAGTGT+GGG 0.522227 8_1:+10271497 Msa1177850:CDS
TGAAATAAAAGGGTCAAGTG+TGG 0.526303 8_1:+10274260 Msa1177850:CDS
CATTCGTGTTATGATCGATC+GGG 0.527325 8_1:-10273848 None:intergenic
AGGGAGCATAGTGAAGGAAA+AGG 0.527997 8_1:-10272625 None:intergenic
GATATTCCAAGGCGACCGAT+AGG 0.539195 8_1:-10273121 None:intergenic
TTGACCATAATGCACATTGG+TGG 0.539301 8_1:-10274093 None:intergenic
CTAAGTGTTGTCATTAAATG+TGG 0.546157 8_1:+10273052 Msa1177850:CDS
TTTCAGGACCTAAACAAATG+AGG 0.546452 8_1:+10274292 Msa1177850:CDS
GGCTTAAGCCATAGAGTTTG+GGG 0.548872 8_1:-10273696 None:intergenic
ATGTTGATATGGACCAAAGT+TGG 0.550286 8_1:+10272444 Msa1177850:CDS
GCATTCGTGTTATGATCGAT+CGG 0.552112 8_1:-10273849 None:intergenic
CAAATACTTTCAATCTAACA+TGG 0.552175 8_1:+10270169 Msa1177850:CDS
ACAGATGATCCACGTGTCAC+CGG 0.553412 8_1:-10271569 None:intergenic
AAACAGATTCAGAACTTGGA+AGG 0.559017 8_1:+10273984 Msa1177850:CDS
AGTCGTAATGGGAAGAAACA+TGG 0.559139 8_1:+10270566 Msa1177850:intron
CTGCTTCAACCAATTACCTA+AGG 0.570182 8_1:+10273164 Msa1177850:CDS
AGGACCTAAACAAATGAGGC+AGG 0.570464 8_1:+10274296 Msa1177850:CDS
TTGGCTTGGACACATGCTCA+TGG 0.581558 8_1:+10271640 Msa1177850:CDS
GTGATGGTGAGTGGAGGAAG+TGG 0.581992 8_1:+10273444 Msa1177850:CDS
CTCAACTTCTCTAAGGGACA+TGG 0.582348 8_1:+10272750 Msa1177850:CDS
CAAGCATATCAAAGTTGCAA+TGG 0.585060 8_1:+10272984 Msa1177850:CDS
ATGCTTGTAAAAGGACCACT+TGG 0.586115 8_1:+10270611 Msa1177850:CDS
GTAGAACTCAACTTCTCTAA+GGG 0.587760 8_1:+10272744 Msa1177850:CDS
TTTGATTAGTAGATGCCCAA+TGG 0.593677 8_1:-10271697 None:intergenic
AGATGATGAAGATTATGTAG+AGG 0.593678 8_1:-10272578 None:intergenic
AATTAGGAAGATGATGAATG+AGG 0.596393 8_1:-10273793 None:intergenic
GCACATTGGTGGCTTCAACA+AGG 0.598989 8_1:-10274082 None:intergenic
GACCTTCAACAGATATTCCA+AGG 0.601000 8_1:-10273132 None:intergenic
CTATTAACAAGACTGGAAAA+GGG 0.605183 8_1:-10270387 None:intergenic
GACACACTTGTGATGGTGAG+TGG 0.610694 8_1:+10273435 Msa1177850:CDS
CCTTGTGCACCAAAATAGGT+AGG 0.611441 8_1:-10270219 None:intergenic
AGGTAGGATCAGCCTTGCCA+CGG 0.616622 8_1:-10270203 None:intergenic
AGTGTTGTCATTAAATGTGG+AGG 0.622671 8_1:+10273055 Msa1177850:CDS
CATCTTCCTAATTATAATCG+GGG 0.623767 8_1:+10273803 Msa1177850:CDS
GTTGAACTTGGTGAGACTGT+TGG 0.624890 8_1:-10274014 None:intergenic
CACATGTGCCAGAAATTGGT+AGG 0.631801 8_1:-10273596 None:intergenic
AACAGATTCAGAACTTGGAA+GGG 0.636327 8_1:+10273985 Msa1177850:CDS
GTTGCCTAAAATCCGTGGCA+AGG 0.637448 8_1:+10270191 Msa1177850:CDS
GGAAACGATCAACCAAGAAG+AGG 0.638587 8_1:-10272656 None:intergenic
CAACAAGGGACTGATATGGA+AGG 0.639217 8_1:-10274067 None:intergenic
GTCGTAATGGGAAGAAACAT+GGG 0.641838 8_1:+10270567 Msa1177850:intron
ATCTACTAATCAAATGTCAG+AGG 0.642524 8_1:+10271706 Msa1177850:CDS
GAAACTAGGGAGCATAGTGA+AGG 0.643522 8_1:-10272631 None:intergenic
ACATGGTTGCCTAAAATCCG+TGG 0.645823 8_1:+10270186 Msa1177850:CDS
TCTTTGACCATAATGCACAT+TGG 0.653833 8_1:-10274096 None:intergenic
GTGATAGAAACAATTCCAAG+TGG 0.660807 8_1:-10270626 None:intergenic
TGATGCAACCTTCAGAAGTG+AGG 0.667104 8_1:-10271607 None:intergenic
CAGGCATGACACACTTGTGA+TGG 0.673949 8_1:+10273428 Msa1177850:intron
TTGAGTTCTACACCTTCACA+AGG 0.680447 8_1:-10272732 None:intergenic
AGGTTCTTACAATCTAGGTG+CGG 0.708377 8_1:+10272681 Msa1177850:CDS
ACACTTGTGATGGTGAGTGG+AGG 0.758886 8_1:+10273438 Msa1177850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTGTTTTTATTTTTTATTA+AGG - chr8_1:10271027-10271046 None:intergenic 10.0%
!!! AATACAATATTTTTAGTAAT+TGG - chr8_1:10271253-10271272 None:intergenic 10.0%
!! AAAATTTCCTTATTAAAAAA+TGG + chr8_1:10272336-10272355 Msa1177850:intron 10.0%
!!! ACATTTTCCATTTTTTAATA+AGG - chr8_1:10272346-10272365 None:intergenic 15.0%
!! ACAATATAAAGACAAAAATA+AGG - chr8_1:10272387-10272406 None:intergenic 15.0%
!! TCAAATAAATTAATTCGAAT+AGG - chr8_1:10272809-10272828 None:intergenic 15.0%
!! TCTCTAATAATTGAAAAAAA+CGG - chr8_1:10273477-10273496 None:intergenic 15.0%
!! TCAATCTATAATAAGGTTAT+TGG + chr8_1:10270098-10270117 Msa1177850:CDS 20.0%
!!! TTATGGGTTTTATTATGATT+TGG + chr8_1:10270133-10270152 Msa1177850:CDS 20.0%
!!! CATATAATTGTTCTTATTTC+AGG + chr8_1:10270346-10270365 Msa1177850:intron 20.0%
!!! AAATAATCTTGTTTACGAAA+AGG + chr8_1:10270860-10270879 Msa1177850:intron 20.0%
!! TCTTATCATACCTATTAATT+AGG + chr8_1:10270896-10270915 Msa1177850:intron 20.0%
!! TGATTCAAAACCTAATTAAT+AGG - chr8_1:10270909-10270928 None:intergenic 20.0%
!! AATATTATCAGTTTGATTCT+TGG + chr8_1:10270975-10270994 Msa1177850:intron 20.0%
!! AAGATTAATTATGAAGTTGA+CGG - chr8_1:10271057-10271076 None:intergenic 20.0%
!! TATTGAATTAATTGCATTTG+TGG + chr8_1:10271167-10271186 Msa1177850:intron 20.0%
!!! CATAACTTTTCACAATATTT+TGG - chr8_1:10271218-10271237 None:intergenic 20.0%
!!! TTACCTGTGATTTTTTTTTT+TGG + chr8_1:10271775-10271794 Msa1177850:intron 20.0%
!! TAACCAAAAAAAAAAATCAC+AGG - chr8_1:10271781-10271800 None:intergenic 20.0%
!! TAACTCTTAAATTAAATCAC+AGG - chr8_1:10271809-10271828 None:intergenic 20.0%
!! TTAATCTTAATCTTACTCTT+GGG - chr8_1:10271833-10271852 None:intergenic 20.0%
!! TTTAATCTTAATCTTACTCT+TGG - chr8_1:10271834-10271853 None:intergenic 20.0%
!! AAAAGTCAATATTCAATCTA+AGG - chr8_1:10272100-10272119 None:intergenic 20.0%
!!! GGAAATTTTTTATGTGAATT+GGG - chr8_1:10272325-10272344 None:intergenic 20.0%
!!! AGGAAATTTTTTATGTGAAT+TGG - chr8_1:10272326-10272345 None:intergenic 20.0%
!!! TTTATATTGTATTTAGCTCA+CGG + chr8_1:10272397-10272416 Msa1177850:intron 20.0%
!!! AAGAATTTTCTCCTAATTTT+GGG - chr8_1:10272534-10272553 None:intergenic 20.0%
!!! AAAGAATTTTCTCCTAATTT+TGG - chr8_1:10272535-10272554 None:intergenic 20.0%
!!! TGTTACTTCTAATAGTAAAT+TGG + chr8_1:10273018-10273037 Msa1177850:CDS 20.0%
!! ACGTAAAAAGTTTAAACAAT+CGG + chr8_1:10273233-10273252 Msa1177850:intron 20.0%
!! ATCATCTTCCTAATTATAAT+CGG + chr8_1:10273801-10273820 Msa1177850:CDS 20.0%
!!! GACTTCTTTTTGAAATAAAA+GGG + chr8_1:10274250-10274269 Msa1177850:CDS 20.0%
! ATCTATAATAAGGTTATTGG+TGG + chr8_1:10270101-10270120 Msa1177850:CDS 25.0%
!!! GTTAGATTGAAAGTATTTGT+AGG - chr8_1:10270168-10270187 None:intergenic 25.0%
! CAAATACTTTCAATCTAACA+TGG + chr8_1:10270169-10270188 Msa1177850:CDS 25.0%
! AAATAGGGATAACTAGATTA+AGG - chr8_1:10270494-10270513 None:intergenic 25.0%
! ATTAGAGTATAGCACAAATA+GGG - chr8_1:10270509-10270528 None:intergenic 25.0%
! AATTAGAGTATAGCACAAAT+AGG - chr8_1:10270510-10270529 None:intergenic 25.0%
! TTTACAACTTATTTGCACAT+CGG + chr8_1:10270695-10270714 Msa1177850:intron 25.0%
! TAAAACAGTCTCAAAAATAG+CGG + chr8_1:10270721-10270740 Msa1177850:intron 25.0%
!!! ACATGGTATTTTTAAGGTTT+AGG - chr8_1:10271088-10271107 None:intergenic 25.0%
! TAAACCTTAAAAATACCATG+TGG + chr8_1:10271087-10271106 Msa1177850:intron 25.0%
! TAGGATGTTTAACCTTTAAT+AGG - chr8_1:10271121-10271140 None:intergenic 25.0%
! AAGGTTAAACATCCTAATTA+CGG + chr8_1:10271125-10271144 Msa1177850:intron 25.0%
!!! AATTTGTTACATCATCCATT+GGG + chr8_1:10271682-10271701 Msa1177850:CDS 25.0%
! ATCAATTATAATCAAGACCA+AGG + chr8_1:10271739-10271758 Msa1177850:intron 25.0%
! AAAAAAATCACAGGTAAGTA+GGG - chr8_1:10271772-10271791 None:intergenic 25.0%
! AAAAAAAATCACAGGTAAGT+AGG - chr8_1:10271773-10271792 None:intergenic 25.0%
! CTTAAATTAAATCACAGGTA+AGG - chr8_1:10271804-10271823 None:intergenic 25.0%
!! TACATTTTCTTAGCAACAAA+AGG - chr8_1:10271884-10271903 None:intergenic 25.0%
! AGTCAAAGCAAAACTTTATA+TGG - chr8_1:10272020-10272039 None:intergenic 25.0%
!! TTATATTGTATTTAGCTCAC+GGG + chr8_1:10272398-10272417 Msa1177850:intron 25.0%
! TCTGCAATAAATTAAAGTCA+TGG - chr8_1:10272425-10272444 None:intergenic 25.0%
! ATTTATTGCAGATGTTGATA+TGG + chr8_1:10272433-10272452 Msa1177850:intron 25.0%
! TTATCTTAAAGTAAACTCGT+AGG + chr8_1:10272782-10272801 Msa1177850:intron 25.0%
! GAGCTTAAAGAAATTACTTA+TGG + chr8_1:10272857-10272876 Msa1177850:intron 25.0%
!!! TAATGTGATATGTTTTTTGC+AGG + chr8_1:10272920-10272939 Msa1177850:intron 25.0%
!!! AATGTGATATGTTTTTTGCA+GGG + chr8_1:10272921-10272940 Msa1177850:intron 25.0%
! TTTATGAACATTACACTTGT+GGG - chr8_1:10272959-10272978 None:intergenic 25.0%
! ATTTATGAACATTACACTTG+TGG - chr8_1:10272960-10272979 None:intergenic 25.0%
! CTATTAGAAGTAACAGTAAA+TGG - chr8_1:10273013-10273032 None:intergenic 25.0%
! TACATCTTATCTATATCGAA+GGG + chr8_1:10273189-10273208 Msa1177850:intron 25.0%
! TAGGGTTTAATTCATATAGA+CGG - chr8_1:10273318-10273337 None:intergenic 25.0%
!!! AATTATTTCTGCAAAGCAAA+AGG - chr8_1:10273368-10273387 None:intergenic 25.0%
! TGTTCTTGAATGAAGAAATT+AGG - chr8_1:10273548-10273567 None:intergenic 25.0%
! TAATATTCAACTCCAAATTG+AGG + chr8_1:10273626-10273645 Msa1177850:CDS 25.0%
! TCATCTTCCTAATTATAATC+GGG + chr8_1:10273802-10273821 Msa1177850:CDS 25.0%
! GTTCAATTCATAGAGATAAA+TGG - chr8_1:10274211-10274230 None:intergenic 25.0%
!!! AACTCACTCTTTTTTTTAAC+AGG + chr8_1:10274228-10274247 Msa1177850:intron 25.0%
!!! GGACTTCTTTTTGAAATAAA+AGG + chr8_1:10274249-10274268 Msa1177850:intron 25.0%
!! TTGAATCAATCAGTTTTACT+TGG + chr8_1:10274364-10274383 Msa1177850:CDS 25.0%
CTATTAACAAGACTGGAAAA+GGG - chr8_1:10270390-10270409 None:intergenic 30.0%
AAAGTAGCTATTAACAAGAC+TGG - chr8_1:10270397-10270416 None:intergenic 30.0%
!! AGTCTTGTTAATAGCTACTT+TGG + chr8_1:10270396-10270415 Msa1177850:CDS 30.0%
! GTCTTGTTAATAGCTACTTT+GGG + chr8_1:10270397-10270416 Msa1177850:CDS 30.0%
!!! GCTCTCATTTGATGATTTTT+TGG - chr8_1:10270443-10270462 None:intergenic 30.0%
CTTGGAGTTGTCTATATAAA+AGG + chr8_1:10270993-10271012 Msa1177850:intron 30.0%
!! ACAACCACATGGTATTTTTA+AGG - chr8_1:10271094-10271113 None:intergenic 30.0%
TTAAAAATACCATGTGGTTG+TGG + chr8_1:10271093-10271112 Msa1177850:intron 30.0%
TTAAACATCCTAATTACGGT+TGG + chr8_1:10271129-10271148 Msa1177850:intron 30.0%
TAAACATCCTAATTACGGTT+GGG + chr8_1:10271130-10271149 Msa1177850:intron 30.0%
ATAGTTGAAGAAACAACGTA+TGG + chr8_1:10271277-10271296 Msa1177850:intron 30.0%
TGTGCTGTAATGTTATATTG+TGG + chr8_1:10271456-10271475 Msa1177850:intron 30.0%
!!! TTTGGCATTCTTGTTTTTTC+CGG + chr8_1:10271550-10271569 Msa1177850:CDS 30.0%
GTTGCATCAAGTATCATATT+TGG + chr8_1:10271621-10271640 Msa1177850:CDS 30.0%
ATCAAGTATCATATTTGGCT+TGG + chr8_1:10271626-10271645 Msa1177850:CDS 30.0%
!! GAATTTGTTACATCATCCAT+TGG + chr8_1:10271681-10271700 Msa1177850:CDS 30.0%
ATCTACTAATCAAATGTCAG+AGG + chr8_1:10271706-10271725 Msa1177850:CDS 30.0%
GATTGAACACTCGAATAAAT+CGG + chr8_1:10272070-10272089 Msa1177850:intron 30.0%
AATTAAAGAGGTCATTCTGT+TGG - chr8_1:10272169-10272188 None:intergenic 30.0%
AGATCACTCACTAATTAAAG+AGG - chr8_1:10272181-10272200 None:intergenic 30.0%
TATTAACACTCGATGAACAA+TGG + chr8_1:10272212-10272231 Msa1177850:intron 30.0%
TTACAGATCACTTACTAAAG+AGG - chr8_1:10272243-10272262 None:intergenic 30.0%
! TTTTATGTGAATTGGGCTTT+AGG - chr8_1:10272318-10272337 None:intergenic 30.0%
! TATATTGTATTTAGCTCACG+GGG + chr8_1:10272399-10272418 Msa1177850:intron 30.0%
CAAATTTGATACTCCAACTT+TGG - chr8_1:10272460-10272479 None:intergenic 30.0%
! CAAAGTTGGAGTATCAAATT+TGG + chr8_1:10272458-10272477 Msa1177850:CDS 30.0%
!! TTTTCTCCTAATTTTGGGAA+TGG - chr8_1:10272529-10272548 None:intergenic 30.0%
AGATGATGAAGATTATGTAG+AGG - chr8_1:10272581-10272600 None:intergenic 30.0%
! CTAAGTGTTGTCATTAAATG+TGG + chr8_1:10273052-10273071 Msa1177850:CDS 30.0%
TCATTAAATGTGGAGGAAAT+TGG + chr8_1:10273062-10273081 Msa1177850:CDS 30.0%
ATAGATAAGATGTAGACCTT+AGG - chr8_1:10273183-10273202 None:intergenic 30.0%
CTACATCTTATCTATATCGA+AGG + chr8_1:10273188-10273207 Msa1177850:intron 30.0%
! AAAGTTTAAACAATCGGCTT+CGG + chr8_1:10273239-10273258 Msa1177850:intron 30.0%
CTGATAAAAAAACACACGAT+TGG - chr8_1:10273275-10273294 None:intergenic 30.0%
!!! CAATCGTGTGTTTTTTTATC+AGG + chr8_1:10273273-10273292 Msa1177850:intron 30.0%
!! CAAACTAGTGTTTTGCTATA+GGG - chr8_1:10273336-10273355 None:intergenic 30.0%
!! TCAAACTAGTGTTTTGCTAT+AGG - chr8_1:10273337-10273356 None:intergenic 30.0%
!! CTTTTGTTTGTTCTTCTATC+AGG + chr8_1:10273409-10273428 Msa1177850:intron 30.0%
GAAGAAATTAGGACAATGTT+TGG - chr8_1:10273537-10273556 None:intergenic 30.0%
AATTAGGAAGATGATGAATG+AGG - chr8_1:10273796-10273815 None:intergenic 30.0%
CATCTTCCTAATTATAATCG+GGG + chr8_1:10273803-10273822 Msa1177850:CDS 30.0%
TAATGACCCCGATTATAATT+AGG - chr8_1:10273812-10273831 None:intergenic 30.0%
TAACACGAATGCAATATTCT+CGG + chr8_1:10273860-10273879 Msa1177850:CDS 30.0%
AATATTCTCGGATCCTTTAA+GGG + chr8_1:10273872-10273891 Msa1177850:CDS 30.0%
CACATATTACTAGCATGTTT+AGG - chr8_1:10273902-10273921 None:intergenic 30.0%
GCATTATAAATCGTTGAACT+TGG - chr8_1:10274029-10274048 None:intergenic 30.0%
!!! GATGACTTACTTTTAAGATC+AGG - chr8_1:10274122-10274141 None:intergenic 30.0%
GTGAGGCTCAATCTATAATA+AGG + chr8_1:10270091-10270110 Msa1177850:CDS 35.0%
TATACCTTGTGCACCAAAAT+AGG - chr8_1:10270226-10270245 None:intergenic 35.0%
ATGAACGCAAGCATACAAAA+AGG - chr8_1:10270284-10270303 None:intergenic 35.0%
GCTATTAACAAGACTGGAAA+AGG - chr8_1:10270391-10270410 None:intergenic 35.0%
! TTTTGCACAATCAGTCGTAA+TGG + chr8_1:10270554-10270573 Msa1177850:intron 35.0%
TTTGCACAATCAGTCGTAAT+GGG + chr8_1:10270555-10270574 Msa1177850:intron 35.0%
GTGATAGAAACAATTCCAAG+TGG - chr8_1:10270629-10270648 None:intergenic 35.0%
TGTTCATTGCACTTCTTGTT+TGG + chr8_1:10270669-10270688 Msa1177850:CDS 35.0%
TATCGTTGCTAAGTGTTTGA+GGG - chr8_1:10270780-10270799 None:intergenic 35.0%
ATATCGTTGCTAAGTGTTTG+AGG - chr8_1:10270781-10270800 None:intergenic 35.0%
CAAGAGAAGTTGTATAGTGT+GGG + chr8_1:10271497-10271516 Msa1177850:CDS 35.0%
AGTTGTATAGTGTGGGAATA+TGG + chr8_1:10271504-10271523 Msa1177850:CDS 35.0%
TATAGTGTGGGAATATGGTT+AGG + chr8_1:10271509-10271528 Msa1177850:CDS 35.0%
!! GAATATGGTTAGGTCTTGTT+GGG + chr8_1:10271519-10271538 Msa1177850:CDS 35.0%
TCTTGTTGGGAACATATGTT+TGG + chr8_1:10271532-10271551 Msa1177850:CDS 35.0%
TCATCTGTGCTACCAATATT+TGG + chr8_1:10271584-10271603 Msa1177850:CDS 35.0%
! ATGGCAATTTTCACAACTCA+TGG + chr8_1:10271659-10271678 Msa1177850:CDS 35.0%
TTTGATTAGTAGATGCCCAA+TGG - chr8_1:10271700-10271719 None:intergenic 35.0%
AAAAACCTTCATACCCCATA+AGG + chr8_1:10272122-10272141 Msa1177850:intron 35.0%
! AGTTGAACTGACTTCCTTAT+GGG - chr8_1:10272139-10272158 None:intergenic 35.0%
! AAGTTGAACTGACTTCCTTA+TGG - chr8_1:10272140-10272159 None:intergenic 35.0%
ATGTTGATATGGACCAAAGT+TGG + chr8_1:10272444-10272463 Msa1177850:CDS 35.0%
TTGCAACCATTCCCAAAATT+AGG + chr8_1:10272520-10272539 Msa1177850:CDS 35.0%
TCCTAAGGTTCTTACAATCT+AGG + chr8_1:10272676-10272695 Msa1177850:CDS 35.0%
ACCTAGATTGTAAGAACCTT+AGG - chr8_1:10272680-10272699 None:intergenic 35.0%
TGTAGAACTCAACTTCTCTA+AGG + chr8_1:10272743-10272762 Msa1177850:CDS 35.0%
GTAGAACTCAACTTCTCTAA+GGG + chr8_1:10272744-10272763 Msa1177850:CDS 35.0%
CATTGCAACTTTGATATGCT+TGG - chr8_1:10272986-10273005 None:intergenic 35.0%
CAAGCATATCAAAGTTGCAA+TGG + chr8_1:10272984-10273003 Msa1177850:CDS 35.0%
!! ATGACAACACTTAGCTTTTC+TGG - chr8_1:10273046-10273065 None:intergenic 35.0%
AGTGTTGTCATTAAATGTGG+AGG + chr8_1:10273055-10273074 Msa1177850:CDS 35.0%
ATATCTGTTGAAGGTCCTTA+TGG + chr8_1:10273139-10273158 Msa1177850:CDS 35.0%
AGATGTAGACCTTAGGTAAT+TGG - chr8_1:10273176-10273195 None:intergenic 35.0%
GATTTGATCCTACCAATTTC+TGG + chr8_1:10273588-10273607 Msa1177850:CDS 35.0%
!! CATAGCATGTATTGGTTCAT+CGG - chr8_1:10273730-10273749 None:intergenic 35.0%
GAACCAATACATGCTATGTT+AGG + chr8_1:10273732-10273751 Msa1177850:CDS 35.0%
CAATATTCTCGGATCCTTTA+AGG + chr8_1:10273871-10273890 Msa1177850:CDS 35.0%
! TTTCAAGTGTAGCTGTCTTA+TGG + chr8_1:10273937-10273956 Msa1177850:CDS 35.0%
AAACAGATTCAGAACTTGGA+AGG + chr8_1:10273984-10274003 Msa1177850:CDS 35.0%
AACAGATTCAGAACTTGGAA+GGG + chr8_1:10273985-10274004 Msa1177850:CDS 35.0%
TCTTTGACCATAATGCACAT+TGG - chr8_1:10274099-10274118 None:intergenic 35.0%
TGAAATAAAAGGGTCAAGTG+TGG + chr8_1:10274260-10274279 Msa1177850:CDS 35.0%
GAAATAAAAGGGTCAAGTGT+GGG + chr8_1:10274261-10274280 Msa1177850:CDS 35.0%
TTTCAGGACCTAAACAAATG+AGG + chr8_1:10274292-10274311 Msa1177850:CDS 35.0%
AACTAAACCAGATGAGCAAA+TGG - chr8_1:10274331-10274350 None:intergenic 35.0%
!! ATTGGTGGTGCTGTTGTTTA+TGG + chr8_1:10270116-10270135 Msa1177850:CDS 40.0%
!! TTGGTGGTGCTGTTGTTTAT+GGG + chr8_1:10270117-10270136 Msa1177850:CDS 40.0%
! AAGGCTGATCCTACCTATTT+TGG + chr8_1:10270210-10270229 Msa1177850:CDS 40.0%
! AGACTGGAAAAGGGTACATA+AGG - chr8_1:10270381-10270400 None:intergenic 40.0%
! AGTCGTAATGGGAAGAAACA+TGG + chr8_1:10270566-10270585 Msa1177850:intron 40.0%
! GTCGTAATGGGAAGAAACAT+GGG + chr8_1:10270567-10270586 Msa1177850:intron 40.0%
AGAAACATGGGACAACCATA+TGG + chr8_1:10270579-10270598 Msa1177850:CDS 40.0%
AACCGTCCAATGCTTGTAAA+AGG + chr8_1:10270602-10270621 Msa1177850:CDS 40.0%
!!! GTCCTTTTACAAGCATTGGA+CGG - chr8_1:10270607-10270626 None:intergenic 40.0%
! AGTGGTCCTTTTACAAGCAT+TGG - chr8_1:10270611-10270630 None:intergenic 40.0%
ATGCTTGTAAAAGGACCACT+TGG + chr8_1:10270611-10270630 Msa1177850:CDS 40.0%
TCAAAAATAGCGGCAGAGTA+CGG + chr8_1:10270731-10270750 Msa1177850:intron 40.0%
TAATAGGTACCACAACCACA+TGG - chr8_1:10271105-10271124 None:intergenic 40.0%
GTGGTTGTGGTACCTATTAA+AGG + chr8_1:10271106-10271125 Msa1177850:intron 40.0%
TTGCAAACCCAACCGTAATT+AGG - chr8_1:10271140-10271159 None:intergenic 40.0%
GCAAGAGAAGTTGTATAGTG+TGG + chr8_1:10271496-10271515 Msa1177850:CDS 40.0%
! GGAATATGGTTAGGTCTTGT+TGG + chr8_1:10271518-10271537 Msa1177850:CDS 40.0%
TCAGAAGTGAGGCCAAATAT+TGG - chr8_1:10271599-10271618 None:intergenic 40.0%
ATATTTGGCCTCACTTCTGA+AGG + chr8_1:10271599-10271618 Msa1177850:CDS 40.0%
AAGAGTTAATCCGCTTGAGT+TGG + chr8_1:10271907-10271926 Msa1177850:intron 40.0%
CATCATCAAACCAACTCAAG+CGG - chr8_1:10271920-10271939 None:intergenic 40.0%
! GTTGAACTGACTTCCTTATG+GGG - chr8_1:10272138-10272157 None:intergenic 40.0%
!! ATTGGGCTTTAGGCTAAGTA+AGG - chr8_1:10272308-10272327 None:intergenic 40.0%
! GTTGGAGTATCAAATTTGGC+TGG + chr8_1:10272462-10272481 Msa1177850:CDS 40.0%
CCAAGAAGAGGTAGAAACTA+GGG - chr8_1:10272647-10272666 None:intergenic 40.0%
ACCAAGAAGAGGTAGAAACT+AGG - chr8_1:10272648-10272667 None:intergenic 40.0%
TCTTGGTTGATCGTTTCCTA+AGG + chr8_1:10272661-10272680 Msa1177850:CDS 40.0%
AGGTTCTTACAATCTAGGTG+CGG + chr8_1:10272681-10272700 Msa1177850:CDS 40.0%
! TCTCGTATTTTGCCTTGTGA+AGG + chr8_1:10272720-10272739 Msa1177850:CDS 40.0%
TTGAGTTCTACACCTTCACA+AGG - chr8_1:10272735-10272754 None:intergenic 40.0%
CTTTCAAATCCTTCGCCTAT+CGG + chr8_1:10273106-10273125 Msa1177850:CDS 40.0%
GACCTTCAACAGATATTCCA+AGG - chr8_1:10273135-10273154 None:intergenic 40.0%
CTTAGGTAATTGGTTGAAGC+AGG - chr8_1:10273166-10273185 None:intergenic 40.0%
CTGCTTCAACCAATTACCTA+AGG + chr8_1:10273164-10273183 Msa1177850:CDS 40.0%
ATGTCACATGTGCCAGAAAT+TGG - chr8_1:10273603-10273622 None:intergenic 40.0%
GTGTGATGTATGCCTCAATT+TGG - chr8_1:10273641-10273660 None:intergenic 40.0%
CATAGAGTTTGGGGATGAAT+TGG - chr8_1:10273690-10273709 None:intergenic 40.0%
CAATTCATCCCCAAACTCTA+TGG + chr8_1:10273688-10273707 Msa1177850:CDS 40.0%
TGGCTTAAGCCATAGAGTTT+GGG - chr8_1:10273700-10273719 None:intergenic 40.0%
TTGGCTTAAGCCATAGAGTT+TGG - chr8_1:10273701-10273720 None:intergenic 40.0%
! ATTGGTTCATCGGATGGATT+TGG - chr8_1:10273720-10273739 None:intergenic 40.0%
GGACCTAACATAGCATGTAT+TGG - chr8_1:10273738-10273757 None:intergenic 40.0%
CTATGTTAGGTCCAAACACT+TGG + chr8_1:10273745-10273764 Msa1177850:CDS 40.0%
CATTCGTGTTATGATCGATC+GGG - chr8_1:10273851-10273870 None:intergenic 40.0%
GCATTCGTGTTATGATCGAT+CGG - chr8_1:10273852-10273871 None:intergenic 40.0%
ATGTTTAGGAACGCCCTTAA+AGG - chr8_1:10273888-10273907 None:intergenic 40.0%
AGCGAAACAGATTCAGAACT+TGG + chr8_1:10273980-10273999 Msa1177850:CDS 40.0%
TTGACCATAATGCACATTGG+TGG - chr8_1:10274096-10274115 None:intergenic 40.0%
ACTTCCTGCCTCATTTGTTT+AGG - chr8_1:10274303-10274322 None:intergenic 40.0%
ACATGGTTGCCTAAAATCCG+TGG + chr8_1:10270186-10270205 Msa1177850:CDS 45.0%
CCTTGTGCACCAAAATAGGT+AGG - chr8_1:10270222-10270241 None:intergenic 45.0%
!!! CCTACCTATTTTGGTGCACA+AGG + chr8_1:10270219-10270238 Msa1177850:CDS 45.0%
!! AAGCATTGGACGGTTCCATA+TGG - chr8_1:10270597-10270616 None:intergenic 45.0%
!!! TTGTTTTTTCCGGTGACACG+TGG + chr8_1:10271560-10271579 Msa1177850:CDS 45.0%
TGATGCAACCTTCAGAAGTG+AGG - chr8_1:10271610-10271629 None:intergenic 45.0%
GACTCCCAGCATGTCTATTT+CGG + chr8_1:10271985-10272004 Msa1177850:intron 45.0%
TCCACCGAAATAGACATGCT+GGG - chr8_1:10271992-10272011 None:intergenic 45.0%
TTAAATGAGACCCCCACAAG+TGG + chr8_1:10272040-10272059 Msa1177850:intron 45.0%
GACTTCCTTATGGGGTATGA+AGG - chr8_1:10272130-10272149 None:intergenic 45.0%
GGAGAGATATCTTTGCTTGC+TGG + chr8_1:10272483-10272502 Msa1177850:CDS 45.0%
!! TGCTTGCTGGTTTGTTCTTG+TGG + chr8_1:10272496-10272515 Msa1177850:CDS 45.0%
!! GCTTGCTGGTTTGTTCTTGT+GGG + chr8_1:10272497-10272516 Msa1177850:CDS 45.0%
! AGGGAGCATAGTGAAGGAAA+AGG - chr8_1:10272628-10272647 None:intergenic 45.0%
! GAAACTAGGGAGCATAGTGA+AGG - chr8_1:10272634-10272653 None:intergenic 45.0%
CCCTAGTTTCTACCTCTTCT+TGG + chr8_1:10272644-10272663 Msa1177850:CDS 45.0%
GGAAACGATCAACCAAGAAG+AGG - chr8_1:10272659-10272678 None:intergenic 45.0%
! CTCAACTTCTCTAAGGGACA+TGG + chr8_1:10272750-10272769 Msa1177850:CDS 45.0%
GCGAAGGATTTGAAAGCAAC+TGG - chr8_1:10273102-10273121 None:intergenic 45.0%
CGCCTTGGAATATCTGTTGA+AGG + chr8_1:10273130-10273149 Msa1177850:CDS 45.0%
TTGGTTGAAGCAGGTCCATA+AGG - chr8_1:10273157-10273176 None:intergenic 45.0%
CACATGTGCCAGAAATTGGT+AGG - chr8_1:10273599-10273618 None:intergenic 45.0%
! TGGGGATGAATTGGAGTATC+TGG - chr8_1:10273681-10273700 None:intergenic 45.0%
GGCTTAAGCCATAGAGTTTG+GGG - chr8_1:10273699-10273718 None:intergenic 45.0%
!! GCATGTATTGGTTCATCGGA+TGG - chr8_1:10273726-10273745 None:intergenic 45.0%
TAGGTCCAAACACTTGGCTT+TGG + chr8_1:10273751-10273770 Msa1177850:CDS 45.0%
! GTTGAACTTGGTGAGACTGT+TGG - chr8_1:10274017-10274036 None:intergenic 45.0%
CAACAAGGGACTGATATGGA+AGG - chr8_1:10274070-10274089 None:intergenic 45.0%
GCTTCAACAAGGGACTGATA+TGG - chr8_1:10274074-10274093 None:intergenic 45.0%
! CACATTGGTGGCTTCAACAA+GGG - chr8_1:10274084-10274103 None:intergenic 45.0%
GAAGCCACCAATGTGCATTA+TGG + chr8_1:10274089-10274108 Msa1177850:CDS 45.0%
! AGTGTGGGAGTTCTTGTTTC+AGG + chr8_1:10274276-10274295 Msa1177850:CDS 45.0%
AGGACCTAAACAAATGAGGC+AGG + chr8_1:10274296-10274315 Msa1177850:CDS 45.0%
GTTGCATCCATTTGCTCATC+TGG + chr8_1:10274321-10274340 Msa1177850:CDS 45.0%
GTTGCCTAAAATCCGTGGCA+AGG + chr8_1:10270191-10270210 Msa1177850:CDS 50.0%
! TCAGCCTTGCCACGGATTTT+AGG - chr8_1:10270198-10270217 None:intergenic 50.0%
ACAGATGATCCACGTGTCAC+CGG - chr8_1:10271572-10271591 None:intergenic 50.0%
!! TTGGCTTGGACACATGCTCA+TGG + chr8_1:10271640-10271659 Msa1177850:CDS 50.0%
GTAAGTAGGGATCATCGCCT+TGG - chr8_1:10271759-10271778 None:intergenic 50.0%
TCCCAGCATGTCTATTTCGG+TGG + chr8_1:10271988-10272007 Msa1177850:intron 50.0%
GTCCACCGAAATAGACATGC+TGG - chr8_1:10271993-10272012 None:intergenic 50.0%
GCATGTCTATTTCGGTGGAC+TGG + chr8_1:10271993-10272012 Msa1177850:intron 50.0%
AATCTCACCGACCACTTGTG+GGG - chr8_1:10272054-10272073 None:intergenic 50.0%
CAATCTCACCGACCACTTGT+GGG - chr8_1:10272055-10272074 None:intergenic 50.0%
TCAATCTCACCGACCACTTG+TGG - chr8_1:10272056-10272075 None:intergenic 50.0%
AGAGGTCATTCTGTTGGCAG+CGG - chr8_1:10272163-10272182 None:intergenic 50.0%
ATCTAGGTGCGGTGTTCGTT+TGG + chr8_1:10272692-10272711 Msa1177850:CDS 50.0%
GATATTCCAAGGCGACCGAT+AGG - chr8_1:10273124-10273143 None:intergenic 50.0%
CAGGCATGACACACTTGTGA+TGG + chr8_1:10273428-10273447 Msa1177850:intron 50.0%
! GACACACTTGTGATGGTGAG+TGG + chr8_1:10273435-10273454 Msa1177850:CDS 50.0%
! ACACTTGTGATGGTGAGTGG+AGG + chr8_1:10273438-10273457 Msa1177850:CDS 50.0%
CCAAGCCAAAGCCAAGTGTT+TGG - chr8_1:10273759-10273778 None:intergenic 50.0%
!! CCAAACACTTGGCTTTGGCT+TGG + chr8_1:10273756-10273775 Msa1177850:CDS 50.0%
! GCACATTGGTGGCTTCAACA+AGG - chr8_1:10274085-10274104 None:intergenic 50.0%
AGGTAGGATCAGCCTTGCCA+CGG - chr8_1:10270206-10270225 None:intergenic 55.0%
ATGAGACCCCCACAAGTGGT+CGG + chr8_1:10272044-10272063 Msa1177850:intron 55.0%
ATCTCACCGACCACTTGTGG+GGG - chr8_1:10272053-10272072 None:intergenic 55.0%
! GTGATGGTGAGTGGAGGAAG+TGG + chr8_1:10273444-10273463 Msa1177850:CDS 55.0%
CCAAGGCGACCGATAGGCGA+AGG - chr8_1:10273118-10273137 None:intergenic 65.0%
CCTTCGCCTATCGGTCGCCT+TGG + chr8_1:10273115-10273134 Msa1177850:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10270084 10274389 10270084 ID=Msa1177850;Name=Msa1177850
chr8_1 mRNA 10270084 10274389 10270084 ID=Msa1177850-mRNA-1;Parent=Msa1177850;Name=Msa1177850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|8|0|677
chr8_1 exon 10270084 10270240 10270084 ID=Msa1177850-mRNA-1:exon:3537;Parent=Msa1177850-mRNA-1
chr8_1 exon 10270368 10270473 10270368 ID=Msa1177850-mRNA-1:exon:3538;Parent=Msa1177850-mRNA-1
chr8_1 exon 10270568 10270690 10270568 ID=Msa1177850-mRNA-1:exon:3539;Parent=Msa1177850-mRNA-1
chr8_1 exon 10271493 10271727 10271493 ID=Msa1177850-mRNA-1:exon:3540;Parent=Msa1177850-mRNA-1
chr8_1 exon 10272444 10272771 10272444 ID=Msa1177850-mRNA-1:exon:3541;Parent=Msa1177850-mRNA-1
chr8_1 exon 10272942 10273185 10272942 ID=Msa1177850-mRNA-1:exon:3542;Parent=Msa1177850-mRNA-1
chr8_1 exon 10273431 10274131 10273431 ID=Msa1177850-mRNA-1:exon:3543;Parent=Msa1177850-mRNA-1
chr8_1 exon 10274250 10274389 10274250 ID=Msa1177850-mRNA-1:exon:3544;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10270084 10270240 10270084 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10270368 10270473 10270368 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10270568 10270690 10270568 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10271493 10271727 10271493 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10272444 10272771 10272444 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10272942 10273185 10272942 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10273431 10274131 10273431 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
chr8_1 CDS 10274250 10274389 10274250 ID=Msa1177850-mRNA-1:cds;Parent=Msa1177850-mRNA-1
Gene Sequence

>Msa1177850

ATGGCTCGTGAGGCTCAATCTATAATAAGGTTATTGGTGGTGCTGTTGTTTATGGGTTTTATTATGATTTGGATAATGATGCCTACAAATACTTTCAATCTAACATGGTTGCCTAAAATCCGTGGCAAGGCTGATCCTACCTATTTTGGTGCACAAGGTGAAACGATCCTTATGTACCCTTTTCCAGTCTTGTTAATAGCTACTTTGGGATGTGTCTATCTACACATAGCCAAAAAATCATCAAATGAGAGCAACATAGAAATTCGTAATGGGAAGAAACATGGGACAACCATATGGAACCGTCCAATGCTTGTAAAAGGACCACTTGGAATTGTTTCTATCACAGAGATAGCATTCTTGCTCATGTTCATTGCACTTCTTGTTTGTGAGCAAGAGAAGTTGTATAGTGTGGGAATATGGTTAGGTCTTGTTGGGAACATATGTTTGGCATTCTTGTTTTTTCCGGTGACACGTGGATCATCTGTGCTACCAATATTTGGCCTCACTTCTGAAGGTTGCATCAAGTATCATATTTGGCTTGGACACATGCTCATGGCAATTTTCACAACTCATGGAATTTGTTACATCATCCATTGGGCATCTACTAATCAAATGTCAGAGATGTTGATATGGACCAAAGTTGGAGTATCAAATTTGGCTGGAGAGATATCTTTGCTTGCTGGTTTGTTCTTGTGGGTTGCAACCATTCCCAAAATTAGGAGAAAATTCTTTGAGCTCTTTTTTTACACTCATTACCTCTACATAATCTTCATCATCTTCTACATATTTCATGTTGACATTTCCTTTTCCTTCACTATGCTCCCTAGTTTCTACCTCTTCTTGGTTGATCGTTTCCTAAGGTTCTTACAATCTAGGTGCGGTGTTCGTTTGGTTTCATCTCGTATTTTGCCTTGTGAAGGTGTAGAACTCAACTTCTCTAAGGGACATGGGTTGACTTATAATCCCACAAGTGTAATGTTCATAAATGTACCAAGCATATCAAAGTTGCAATGGCATCCATTTACTGTTACTTCTAATAGTAAATTGGAACCAGAAAAGCTAAGTGTTGTCATTAAATGTGGAGGAAATTGGACACAGAAGCTCTACCAGTTGCTTTCAAATCCTTCGCCTATCGGTCGCCTTGGAATATCTGTTGAAGGTCCTTATGGACCTGCTTCAACCAATTACCTAAGGCATGACACACTTGTGATGGTGAGTGGAGGAAGTGGTATCACACCGTTTTTTTCAATTATTAGAGAGCTAATATATCTTAGCAATACATTCAAATGCAAGACACCAAACATTGTCCTAATTTCTTCATTCAAGAACACTTCATGTCTATCAATGCTAGATTTGATCCTACCAATTTCTGGCACATGTGACATTTCTAATATTCAACTCCAAATTGAGGCATACATCACACGAGACAAAGAGTTTAAACCAGATACTCCAATTCATCCCCAAACTCTATGGCTTAAGCCAAATCCATCCGATGAACCAATACATGCTATGTTAGGTCCAAACACTTGGCTTTGGCTTGGTGCAATAATCACATCCTCATTCATCATCTTCCTAATTATAATCGGGGTCATTACTCGTTACTACATTTTCCCGATCGATCATAACACGAATGCAATATTCTCGGATCCTTTAAGGGCGTTCCTAAACATGCTAGTAATATGTGTGTCGATAGCTGTTGTTTCAAGTGTAGCTGTCTTATGGAACAAACAAAATGCTAAAGAAGCGAAACAGATTCAGAACTTGGAAGGGTCATCACCAACAGTCTCACCAAGTTCAACGATTTATAATGCAGATAGAGAATTAGAAAGCCTTCCATATCAGTCCCTTGTTGAAGCCACCAATGTGCATTATGGTCAAAGACCTGATCTTAAAAGACTTCTTTTTGAAATAAAAGGGTCAAGTGTGGGAGTTCTTGTTTCAGGACCTAAACAAATGAGGCAGGAAGTTGCATCCATTTGCTCATCTGGTTTAGTTGAAAATTTGCATTTTGAATCAATCAGTTTTACTTGGTAA
Protein sequence

>Msa1177850

MAREAQSIIRLLVVLLFMGFIMIWIMMPTNTFNLTWLPKIRGKADPTYFGAQGETILMYPFPVLLIATLGCVYLHIAKKSSNESNIEIRNGKKHGTTIWNRPMLVKGPLGIVSITEIAFLLMFIALLVCEQEKLYSVGIWLGLVGNICLAFLFFPVTRGSSVLPIFGLTSEGCIKYHIWLGHMLMAIFTTHGICYIIHWASTNQMSEMLIWTKVGVSNLAGEISLLAGLFLWVATIPKIRRKFFELFFYTHYLYIIFIIFYIFHVDISFSFTMLPSFYLFLVDRFLRFLQSRCGVRLVSSRILPCEGVELNFSKGHGLTYNPTSVMFINVPSISKLQWHPFTVTSNSKLEPEKLSVVIKCGGNWTQKLYQLLSNPSPIGRLGISVEGPYGPASTNYLRHDTLVMVSGGSGITPFFSIIRELIYLSNTFKCKTPNIVLISSFKNTSCLSMLDLILPISGTCDISNIQLQIEAYITRDKEFKPDTPIHPQTLWLKPNPSDEPIHAMLGPNTWLWLGAIITSSFIIFLIIIGVITRYYIFPIDHNTNAIFSDPLRAFLNMLVICVSIAVVSSVAVLWNKQNAKEAKQIQNLEGSSPTVSPSSTIYNADRELESLPYQSLVEATNVHYGQRPDLKRLLFEIKGSSVGVLVSGPKQMRQEVASICSSGLVENLHFESISFTW*