AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1183010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183010 MtrunA17_Chr8g0336681 88.150 346 36 4 1 342 1 345 0.0 582
Msa1183010 MtrunA17_Chr2g0333621 43.787 338 163 8 1 335 1 314 6.97e-70 221
Msa1183010 MtrunA17_Chr2g0333641 39.759 332 173 8 1 331 1 306 2.10e-61 199
Msa1183010 MtrunA17_Chr7g0249811 43.609 266 118 4 73 337 99 333 1.30e-59 194
Msa1183010 MtrunA17_Chr4g0002801 40.510 353 168 10 1 333 1 331 2.21e-59 194
Msa1183010 MtrunA17_Chr4g0002781 39.045 356 188 7 1 333 1 350 3.22e-58 191
Msa1183010 MtrunA17_Chr5g0400661 40.476 252 131 5 98 332 85 334 4.89e-50 170
Msa1183010 MtrunA17_Chr2g0333611 46.766 201 86 5 143 336 33 219 7.14e-49 163
Msa1183010 MtrunA17_Chr5g0400621 47.668 193 93 2 137 328 140 325 8.56e-48 164
Msa1183010 MtrunA17_Chr2g0280161 48.066 181 85 3 150 328 173 346 1.35e-47 164
Msa1183010 MtrunA17_Chr4g0054561 46.524 187 88 4 147 331 148 324 2.43e-47 162
Msa1183010 MtrunA17_Chr4g0054551 45.989 187 89 4 147 331 148 324 4.32e-46 159
Msa1183010 MtrunA17_Chr4g0049331 47.753 178 83 3 153 328 134 303 1.54e-45 157
Msa1183010 MtrunA17_Chr4g0054581 34.637 358 190 11 8 327 18 369 2.34e-43 154
Msa1183010 MtrunA17_Chr6g0468491 37.255 306 156 10 27 328 32 305 3.42e-42 149
Msa1183010 MtrunA17_Chr5g0400671 32.647 340 190 9 1 332 15 323 7.85e-42 148
Msa1183010 MtrunA17_Chr2g0333541 47.541 183 90 4 147 328 87 264 1.18e-39 141
Msa1183010 MtrunA17_Chr2g0307131 38.528 231 118 5 109 333 140 352 6.46e-39 141
Msa1183010 MtrunA17_Chr2g0307141 40.957 188 98 3 153 335 182 361 1.28e-37 138
Msa1183010 MtrunA17_Chr4g0033291 37.879 198 114 2 136 333 137 325 6.71e-37 135
Msa1183010 MtrunA17_Chr4g0033391 38.308 201 115 1 142 342 135 326 3.27e-36 133
Msa1183010 MtrunA17_Chr7g0225901 42.941 170 87 4 146 313 80 241 2.20e-35 129
Msa1183010 MtrunA17_Chr4g0054571 39.844 256 130 8 90 333 87 330 7.60e-35 130
Msa1183010 MtrunA17_Chr4g0033281 34.940 249 138 5 90 333 93 322 1.16e-31 121
Msa1183010 MtrunA17_Chr4g0054621 34.555 191 112 2 138 328 156 333 1.09e-30 119
Msa1183010 MtrunA17_Chr6g0468461 35.526 228 118 4 88 312 110 311 2.70e-30 118
Msa1183010 MtrunA17_Chr5g0400641 40.994 161 87 3 157 316 1 154 4.76e-30 112
Msa1183010 MtrunA17_Chr7g0233441 38.816 152 77 3 177 328 57 192 3.70e-28 108
Msa1183010 MtrunA17_Chr8g0336671 70.886 79 19 3 120 197 1 76 5.11e-28 104
Msa1183010 MtrunA17_Chr4g0002851 37.500 152 71 2 177 328 65 192 1.61e-26 104
Msa1183010 MtrunA17_Chr4g0002831 39.024 164 82 5 166 328 54 200 2.41e-25 101
Msa1183010 MtrunA17_Chr1g0185621 28.082 146 91 2 154 291 475 614 1.40e-13 71.6
Msa1183010 MtrunA17_Chr8g0346161 24.051 158 115 2 139 296 276 428 6.71e-12 66.2
Msa1183010 MtrunA17_Chr7g0252041 29.299 157 105 3 156 306 288 444 1.28e-11 65.5
Msa1183010 MtrunA17_Chr8g0366751 26.630 184 100 4 133 296 441 609 1.37e-11 65.5
Msa1183010 MtrunA17_Chr5g0411341 27.059 170 117 2 133 296 472 640 2.94e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183010 AT4G37850.2 44.898 196 95 4 140 331 138 324 1.96e-46 160
Msa1183010 AT4G37850.1 44.898 196 95 4 140 331 138 324 1.96e-46 160
Msa1183010 AT2G22770.1 41.117 197 107 2 146 333 124 320 4.88e-43 151
Msa1183010 AT2G22760.1 44.693 179 91 4 153 328 118 291 3.78e-41 146
Msa1183010 AT2G22750.2 42.149 242 130 5 95 331 65 301 2.39e-39 141
Msa1183010 AT2G22750.5 42.149 242 130 5 95 331 89 325 3.19e-39 142
Msa1183010 AT2G22750.3 42.149 242 130 5 95 331 93 329 3.45e-39 142
Msa1183010 AT2G22750.1 42.149 242 129 6 95 331 65 300 7.23e-38 137
Msa1183010 AT2G22750.4 42.149 242 129 6 95 331 93 328 8.26e-38 138
Msa1183010 AT2G22760.2 43.827 162 84 3 153 312 118 274 1.49e-35 130
Msa1183010 AT4G17880.1 26.000 200 140 3 97 296 361 552 9.02e-13 69.7
Msa1183010 AT4G29930.1 27.273 176 112 5 155 315 55 229 1.77e-12 67.0
Msa1183010 AT5G46760.1 26.554 177 127 3 121 296 381 555 1.82e-12 68.6
Msa1183010 AT1G63650.3 28.000 175 107 5 130 289 382 552 4.00e-12 67.8
Msa1183010 AT1G63650.1 28.000 175 107 5 130 289 382 552 4.00e-12 67.8
Msa1183010 AT1G63650.2 28.000 175 107 5 130 289 382 552 4.00e-12 67.8
Msa1183010 AT4G29930.2 26.543 162 102 3 155 315 55 200 4.13e-12 65.5
Msa1183010 AT1G12860.2 30.128 156 99 3 156 306 269 419 4.51e-12 67.0
Msa1183010 AT1G12860.1 28.916 166 108 3 156 316 269 429 4.57e-12 67.0
Msa1183010 AT4G09820.1 27.972 143 75 3 146 287 355 470 5.36e-12 67.0
Msa1183010 AT4G29930.6 26.061 165 102 3 155 315 55 203 7.08e-12 64.7
Msa1183010 AT1G32640.1 28.402 169 104 3 136 297 434 592 1.33e-11 66.2
Msa1183010 AT2G46510.1 41.096 73 43 0 136 208 377 449 2.54e-11 65.1
Msa1183010 AT4G29930.3 26.590 173 111 5 155 312 55 226 3.66e-11 63.2
Msa1183010 AT4G29930.7 26.590 173 111 5 155 312 55 226 3.66e-11 63.2
Msa1183010 AT2G16910.1 27.097 155 97 3 156 294 316 470 4.54e-11 64.3
Msa1183010 AT3G26744.6 29.114 158 104 4 155 306 308 463 5.67e-11 63.9
Msa1183010 AT3G26744.1 29.114 158 104 4 155 306 308 463 6.61e-11 63.9
Msa1183010 AT3G26744.4 29.114 158 104 4 155 306 308 463 6.61e-11 63.9
Msa1183010 AT3G26744.2 29.114 158 104 4 155 306 308 463 6.61e-11 63.9
Msa1183010 AT5G41315.2 26.630 184 106 6 130 289 423 601 7.19e-11 63.9
Msa1183010 AT5G41315.3 26.630 184 106 6 130 289 420 598 7.23e-11 63.9
Msa1183010 AT5G41315.1 26.630 184 106 6 130 289 415 593 7.89e-11 63.5
Msa1183010 AT4G29930.5 25.786 159 101 3 155 312 55 197 8.08e-11 62.0

Find 86 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTGGATTTCTTCTT+TGG 0.193974 8_1:-18184163 Msa1183010:intron
TGGAAAATTTGTGGGAAAAT+TGG 0.196003 8_1:-18184176 Msa1183010:CDS
GAAGAACATGTGATACTATT+AGG 0.204535 8_1:+18183730 None:intergenic
AGAGTTTCTTCTTAGATTCT+TGG 0.212913 8_1:+18183636 None:intergenic
TGTCATATAGATTCCTCTTT+TGG 0.216258 8_1:-18178887 Msa1183010:three_prime_UTR
AGTAGCAGTGTCTTGCCTTT+TGG 0.235787 8_1:-18180951 Msa1183010:CDS
GGATGTTCTGGTCAGATTAA+TGG 0.246169 8_1:-18181006 Msa1183010:CDS
GCTAGAATACATCTTTGAAT+TGG 0.263259 8_1:-18184246 Msa1183010:five_prime_UTR
TATCACATGTTCTTCTATTA+TGG 0.274658 8_1:-18183722 Msa1183010:CDS
CTCCTCTATTGTGGAAGCTT+GGG 0.310037 8_1:+18181160 None:intergenic
ACATTATGGCTGAGAGAAAA+AGG 0.316242 8_1:-18183597 Msa1183010:CDS
CCCTCTTGGAATAATATCTA+TGG 0.320492 8_1:+18181099 None:intergenic
AAGAACATGTGATACTATTA+GGG 0.345185 8_1:+18183731 None:intergenic
AAACCGACATAAACAAGAAT+TGG 0.346505 8_1:+18179137 None:intergenic
AATATTGTTAAAATATTGTA+TGG 0.351091 8_1:+18183918 None:intergenic
GTCCGGAATTCTTATATGAT+TGG 0.353354 8_1:-18184279 Msa1183010:five_prime_UTR
TGGTGACAAATCTCCCTCTT+TGG 0.360825 8_1:-18184016 Msa1183010:CDS
TCTCCTCTATTGTGGAAGCT+TGG 0.367214 8_1:+18181159 None:intergenic
TGAATCCCAATGTACATGTT+TGG 0.373282 8_1:-18184359 None:intergenic
ACTCAAAATATTGTTGTTCA+AGG 0.374555 8_1:+18183687 None:intergenic
TGAGAAACAAAAGGATGTTC+TGG 0.375096 8_1:-18181018 Msa1183010:CDS
GACCAATCATATAAGAATTC+CGG 0.391661 8_1:+18184277 None:intergenic
CTAGAATACATCTTTGAATT+GGG 0.398618 8_1:-18184245 Msa1183010:five_prime_UTR
AGCGTGAATGATCTAGTTAA+TGG 0.408638 8_1:-18179229 Msa1183010:CDS
AGGCAGATGAAGGTGAGATT+TGG 0.409209 8_1:-18178993 Msa1183010:three_prime_UTR
AGAATGTGCTCTTGAATTGT+GGG 0.413080 8_1:+18183874 None:intergenic
AGAGATACAAGATCACATTA+TGG 0.415532 8_1:-18183611 Msa1183010:CDS
TTCTTTGGATGGAAAATTTG+TGG 0.420188 8_1:-18184185 Msa1183010:exon
TTGAGTGTATGTTTCTTGTC+CGG 0.423361 8_1:-18184296 Msa1183010:five_prime_UTR
TTAACTAACCTTCTTCAATC+CGG 0.424112 8_1:+18183528 None:intergenic
ATAATGATAATATTTCTTAG+AGG 0.424597 8_1:-18179174 Msa1183010:exon
ATGTATAAAGCTATGTATGA+TGG 0.433061 8_1:-18179072 Msa1183010:three_prime_UTR
GAGAATGTGCTCTTGAATTG+TGG 0.434126 8_1:+18183873 None:intergenic
AACCCTAGGTAGTTCCCTCT+TGG 0.443975 8_1:+18181085 None:intergenic
TTTGTTTGTTTGTAATGAAA+GGG 0.455439 8_1:-18179046 Msa1183010:three_prime_UTR
TCTTTGGATGGAAAATTTGT+GGG 0.456128 8_1:-18184184 Msa1183010:exon
ATTTGTTTGTTTGTAATGAA+AGG 0.467962 8_1:-18179047 Msa1183010:three_prime_UTR
ATCCCAAGCTTCCACAATAG+AGG 0.477093 8_1:-18181162 Msa1183010:CDS
CATTTACATATAGACTGATA+AGG 0.479352 8_1:-18181294 Msa1183010:intron
ATGTGAAACAACTTCAAGAA+AGG 0.479598 8_1:-18181244 Msa1183010:CDS
AACCTTCTTCAATCCGGGTA+TGG 0.482099 8_1:+18183534 None:intergenic
AAAAGTTACAATCATTGCTC+AGG 0.483463 8_1:-18180916 Msa1183010:intron
GATTAATGTATGATAAGATT+TGG 0.484478 8_1:-18178967 Msa1183010:three_prime_UTR
AGCTAGAGAATCATAACAAA+AGG 0.486256 8_1:-18181214 Msa1183010:CDS
ATAGACAAGGAAATTCTCAT+TGG 0.487223 8_1:-18181050 Msa1183010:CDS
AATACATCTTTGAATTGGGC+AGG 0.489122 8_1:-18184241 Msa1183010:five_prime_UTR
TAACTAACCTTCTTCAATCC+GGG 0.489242 8_1:+18183529 None:intergenic
TTTAGAGTGGATGTTCCAAA+AGG 0.493560 8_1:+18180936 None:intergenic
GATAGCTTCTTGAAGTATGT+AGG 0.500256 8_1:+18181271 None:intergenic
ATGACCCTTGCTTCAACCCT+AGG 0.508087 8_1:+18181071 None:intergenic
CCTCCAATTCTTGTTTATGT+CGG 0.514798 8_1:-18179140 Msa1183010:three_prime_UTR
AATTATGTTCTTGAGAAATG+AGG 0.519126 8_1:+18183827 None:intergenic
GCATTGTCTGCCACCATACC+CGG 0.522189 8_1:-18183547 Msa1183010:CDS
TGGCCTGCGGCAAAATCTCA+TGG 0.524286 8_1:-18179209 Msa1183010:CDS
TTCCAAGAGGGAACTACCTA+GGG 0.525124 8_1:-18181087 Msa1183010:CDS
AATCCATTGTGAGAAACAAA+AGG 0.526613 8_1:-18181027 Msa1183010:CDS
TGTGAAACAACTTCAAGAAA+GGG 0.529417 8_1:-18181243 Msa1183010:CDS
CACCATACCCGGATTGAAGA+AGG 0.530151 8_1:-18183536 Msa1183010:intron
CCGACATAAACAAGAATTGG+AGG 0.531310 8_1:+18179140 None:intergenic
AACTACCTAGGGTTGAAGCA+AGG 0.539098 8_1:-18181076 Msa1183010:CDS
ATTCCAAGAGGGAACTACCT+AGG 0.539100 8_1:-18181088 Msa1183010:CDS
TGTATAAAGCTATGTATGAT+GGG 0.542335 8_1:-18179071 Msa1183010:three_prime_UTR
TAATGATAATATTTCTTAGA+GGG 0.544633 8_1:-18179173 Msa1183010:exon
ATTATGTTCTTGAGAAATGA+GGG 0.546811 8_1:+18183828 None:intergenic
TTCTTGAGAAATGAGGGAGT+TGG 0.554351 8_1:+18183834 None:intergenic
TTTATGATGTGCTGGTTGGG+TGG 0.563787 8_1:-18178921 Msa1183010:three_prime_UTR
ACTACCTAGGGTTGAAGCAA+GGG 0.564338 8_1:-18181075 Msa1183010:CDS
AAACTTGTCTTCATCCAAAG+AGG 0.569979 8_1:+18184002 None:intergenic
GGAGACAAGTTCTTAGTGAG+AGG 0.572609 8_1:-18183576 Msa1183010:CDS
GAGAATCATAACAAAAGGAA+AGG 0.572712 8_1:-18181209 Msa1183010:CDS
TTGGAATATTATCCATCTAA+CGG 0.576637 8_1:-18184340 Msa1183010:five_prime_UTR
AAATTGAGAGAACTCTAGCT+AGG 0.578084 8_1:+18184208 None:intergenic
CTTCTTCAATCCGGGTATGG+TGG 0.579713 8_1:+18183537 None:intergenic
AAGGACAAAATGTATTGAGA+AGG 0.581821 8_1:+18183778 None:intergenic
GAATGTGCTCTTGAATTGTG+GGG 0.587676 8_1:+18183875 None:intergenic
AAGAAACATACACTCAAATG+TGG 0.603823 8_1:+18184302 None:intergenic
AACTTGTCTTCATCCAAAGA+GGG 0.612368 8_1:+18184003 None:intergenic
ACCATAGATATTATTCCAAG+AGG 0.614334 8_1:-18181100 Msa1183010:CDS
TCCATGTTATAGGAAATGGT+TGG 0.616814 8_1:-18184036 Msa1183010:intron
CCATAGATATTATTCCAAGA+GGG 0.619879 8_1:-18181099 Msa1183010:CDS
CATGTGATACTATTAGGGGA+AGG 0.627114 8_1:+18183736 None:intergenic
TTGAGAGAACTCTAGCTAGG+AGG 0.662972 8_1:+18184211 None:intergenic
TGAAGCAAGGGTCATAGACA+AGG 0.670455 8_1:-18181063 Msa1183010:CDS
ATGATCTAGTTAATGGCCTG+CGG 0.675515 8_1:-18179222 Msa1183010:CDS
AGAACATGTGATACTATTAG+GGG 0.711176 8_1:+18183732 None:intergenic
AATGTGCTCTTGAATTGTGG+GGG 0.711306 8_1:+18183876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAAATAATAAAAT+TGG + chr8_1:18181634-18181653 None:intergenic 0.0%
!! AATATTGTTAAAATATTGTA+TGG + chr8_1:18179300-18179319 None:intergenic 10.0%
!!! TTTTTTTTTTACCAAATAAT+GGG + chr8_1:18179992-18180011 None:intergenic 10.0%
!!! TTTTTTTTTTTACCAAATAA+TGG + chr8_1:18179993-18180012 None:intergenic 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + chr8_1:18180616-18180635 None:intergenic 10.0%
!!! TTTTTTTTTTTTCTTCAAAA+AGG - chr8_1:18181103-18181122 Msa1183010:CDS 10.0%
!! AGAAAAATGTATAAATAAAA+GGG + chr8_1:18182766-18182785 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+AGG + chr8_1:18182767-18182786 None:intergenic 10.0%
!!! TTTTTTAAACATAAACTTTA+AGG - chr8_1:18182998-18183017 Msa1183010:intron 10.0%
!!! TTTTTAAACATAAACTTTAA+GGG - chr8_1:18182999-18183018 Msa1183010:intron 10.0%
!!! TTTTGATGATTTTATTTTTA+AGG - chr8_1:18183193-18183212 Msa1183010:intron 10.0%
!! TTATTATTTCAATTGTATAA+AGG + chr8_1:18183657-18183676 None:intergenic 10.0%
!! TTATATATCAATGATATTGA+GGG + chr8_1:18179727-18179746 None:intergenic 15.0%
!! TTTATATATCAATGATATTG+AGG + chr8_1:18179728-18179747 None:intergenic 15.0%
!! TACACAGAAAAAAAAAAAAA+AGG + chr8_1:18179897-18179916 None:intergenic 15.0%
!! TAGTAATTTACAACATAAAA+TGG - chr8_1:18180114-18180133 Msa1183010:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr8_1:18182669-18182688 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr8_1:18180640-18180659 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr8_1:18180639-18180658 Msa1183010:intron 15.0%
!! TTGAAGAAAAAAAAAAAAAG+TGG + chr8_1:18181101-18181120 None:intergenic 15.0%
!!! AAAAAAAACATATTCTGAAA+AGG - chr8_1:18181268-18181287 Msa1183010:CDS 15.0%
!!! AATTTTTGTCAAAATTACAA+CGG + chr8_1:18181474-18181493 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr8_1:18182427-18182446 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr8_1:18182428-18182447 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr8_1:18182566-18182585 Msa1183010:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr8_1:18182669-18182688 Msa1183010:intron 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr8_1:18182803-18182822 Msa1183010:intron 15.0%
!!! ATTTCATTTTCCAATATAAT+TGG - chr8_1:18182852-18182871 Msa1183010:intron 15.0%
!! ATTATTCAAATATTACTCTT+TGG + chr8_1:18183243-18183262 None:intergenic 15.0%
!! TAACTAAATGTATCTTTATA+CGG + chr8_1:18183289-18183308 None:intergenic 15.0%
!! GAATTAAGAGAAATTTAATA+TGG - chr8_1:18183544-18183563 Msa1183010:CDS 15.0%
!!! GTTTTAATCAAAATATAAGA+AGG - chr8_1:18183748-18183767 Msa1183010:CDS 15.0%
!! TATTCAAAATTAAAGAACTT+TGG + chr8_1:18183776-18183795 None:intergenic 15.0%
!!! TAATTTTAAGTATTGATTCA+TGG - chr8_1:18183825-18183844 Msa1183010:CDS 15.0%
!! ATAATGATAATATTTCTTAG+AGG - chr8_1:18184041-18184060 Msa1183010:intron 15.0%
!! TAATGATAATATTTCTTAGA+GGG - chr8_1:18184042-18184061 Msa1183010:intron 15.0%
!! TAAATCTAAATACAAAAAAG+AGG - chr8_1:18184202-18184221 Msa1183010:five_prime_UTR 15.0%
!! AATAAATTATTGAACACATG+TGG + chr8_1:18179804-18179823 None:intergenic 20.0%
!! GTTCATAAAACTAATTGAAA+GGG + chr8_1:18179875-18179894 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTGTACAA+TGG - chr8_1:18179900-18179919 Msa1183010:intron 20.0%
!! GAAAATACTAGAATAGATAT+TGG - chr8_1:18180034-18180053 Msa1183010:intron 20.0%
!!! ATTTCTTTATTGGTTGTTAA+CGG + chr8_1:18180365-18180384 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr8_1:18182629-18182648 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr8_1:18180630-18180649 Msa1183010:intron 20.0%
!!! TTGCTTTTAAAATGTATGTT+TGG + chr8_1:18180945-18180964 None:intergenic 20.0%
!!! TTATACAAATTTTGTTCAAG+TGG + chr8_1:18181568-18181587 None:intergenic 20.0%
!! AAATTGGCTAGTAATATTAA+GGG + chr8_1:18181618-18181637 None:intergenic 20.0%
!! AAAATTGGCTAGTAATATTA+AGG + chr8_1:18181619-18181638 None:intergenic 20.0%
!! AAAGTTATATAAAGAACACA+AGG + chr8_1:18181853-18181872 None:intergenic 20.0%
!!! GACACTTATTTTTAGAAAAT+GGG + chr8_1:18182358-18182377 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr8_1:18182629-18182648 Msa1183010:intron 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr8_1:18182802-18182821 Msa1183010:intron 20.0%
!! GAAATTGTTTCAATAAAATG+TGG + chr8_1:18182882-18182901 None:intergenic 20.0%
!! AATCATCAAAAAAAGAAGAA+AGG + chr8_1:18183184-18183203 None:intergenic 20.0%
!! AATAATCAAAAACAACCTTT+AGG - chr8_1:18183257-18183276 Msa1183010:intron 20.0%
!!! AAGGACTATATACTTATTTT+TGG + chr8_1:18183909-18183928 None:intergenic 20.0%
!! AGCATATTTAGAAATTTCAA+AGG + chr8_1:18183928-18183947 None:intergenic 20.0%
!!! AAGTTTGTAGAAATTTTGTT+TGG - chr8_1:18184103-18184122 Msa1183010:intron 20.0%
!! ATTTGTTTGTTTGTAATGAA+AGG - chr8_1:18184168-18184187 Msa1183010:CDS 20.0%
!! TTTGTTTGTTTGTAATGAAA+GGG - chr8_1:18184169-18184188 Msa1183010:CDS 20.0%
!! GATTAATGTATGATAAGATT+TGG - chr8_1:18184248-18184267 Msa1183010:five_prime_UTR 20.0%
! TTGGAATATTATCCATCTAA+CGG - chr8_1:18178875-18178894 Msa1183010:three_prime_UTR 25.0%
!!! TTTTAATTTCTACCGTTAGA+TGG + chr8_1:18178890-18178909 None:intergenic 25.0%
! CTAGAATACATCTTTGAATT+GGG - chr8_1:18178970-18178989 Msa1183010:three_prime_UTR 25.0%
! ATTATGTTCTTGAGAAATGA+GGG + chr8_1:18179390-18179409 None:intergenic 25.0%
! AATTATGTTCTTGAGAAATG+AGG + chr8_1:18179391-18179410 None:intergenic 25.0%
! AAGAACATGTGATACTATTA+GGG + chr8_1:18179487-18179506 None:intergenic 25.0%
! TATCACATGTTCTTCTATTA+TGG - chr8_1:18179493-18179512 Msa1183010:intron 25.0%
!! ACTCAAAATATTGTTGTTCA+AGG + chr8_1:18179531-18179550 None:intergenic 25.0%
!! GTTCTTTTCTTAATTGTCTT+TGG + chr8_1:18179560-18179579 None:intergenic 25.0%
! GGTTCATAAAACTAATTGAA+AGG + chr8_1:18179876-18179895 None:intergenic 25.0%
! GGTTTCAAAATGATATGATT+CGG + chr8_1:18180247-18180266 None:intergenic 25.0%
! ACAATGAATAATTGATGTCA+TGG + chr8_1:18181410-18181429 None:intergenic 25.0%
! TTATATGATTGTCAGAATCA+CGG - chr8_1:18181444-18181463 Msa1183010:intron 25.0%
! ATATAAAGAACACAAGGTAA+AGG + chr8_1:18181847-18181866 None:intergenic 25.0%
! CATTTACATATAGACTGATA+AGG - chr8_1:18181921-18181940 Msa1183010:intron 25.0%
!!! AATGATTGTAACTTTTAGAG+TGG + chr8_1:18182295-18182314 None:intergenic 25.0%
!!! GGACACTTATTTTTAGAAAA+TGG + chr8_1:18182359-18182378 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr8_1:18182380-18182399 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr8_1:18182381-18182400 None:intergenic 25.0%
!!! AAATGACACTCATTTTGAAA+CGG + chr8_1:18182460-18182479 None:intergenic 25.0%
!!! TTCAAAATGAGTGTCATTTT+AGG - chr8_1:18182461-18182480 Msa1183010:intron 25.0%
!!! AATAGTTGATAAGGATAGTT+TGG + chr8_1:18182543-18182562 None:intergenic 25.0%
! AAACTATCCTTATCAACTAT+TGG - chr8_1:18182542-18182561 Msa1183010:intron 25.0%
!! AAACTAACCAATAGTTGATA+AGG + chr8_1:18182552-18182571 None:intergenic 25.0%
! TGTATAAATAAAAGGGAAAG+TGG + chr8_1:18182759-18182778 None:intergenic 25.0%
!! TCATTTTCCAATATAATTGG+AGG - chr8_1:18182855-18182874 Msa1183010:intron 25.0%
! AAATTATTTCAAGATGACCA+TGG + chr8_1:18183154-18183173 None:intergenic 25.0%
! ATGTACGAGTTTCATAAAAA+AGG + chr8_1:18183508-18183527 None:intergenic 25.0%
! TTAAAACCATCAATTGATGT+CGG + chr8_1:18183735-18183754 None:intergenic 25.0%
!!! ACTAGATATTTTAATGACGA+TGG + chr8_1:18183806-18183825 None:intergenic 25.0%
!!! TTTTAAGTATTGATTCATGG+TGG - chr8_1:18183828-18183847 Msa1183010:CDS 25.0%
! ATGTATAAAGCTATGTATGA+TGG - chr8_1:18184143-18184162 Msa1183010:intron 25.0%
! TGTATAAAGCTATGTATGAT+GGG - chr8_1:18184144-18184163 Msa1183010:intron 25.0%
!!! ATGATTATTTTATGATGTGC+TGG - chr8_1:18184286-18184305 Msa1183010:five_prime_UTR 25.0%
! ATAAACGAAAAATCCAAAAG+AGG + chr8_1:18184344-18184363 None:intergenic 25.0%
AAGAAACATACACTCAAATG+TGG + chr8_1:18178916-18178935 None:intergenic 30.0%
GACCAATCATATAAGAATTC+CGG + chr8_1:18178941-18178960 None:intergenic 30.0%
GCTAGAATACATCTTTGAAT+TGG - chr8_1:18178969-18178988 Msa1183010:three_prime_UTR 30.0%
! GAGTTCTCTCAATTTTTCTT+TGG - chr8_1:18179015-18179034 Msa1183010:three_prime_UTR 30.0%
! TCTCTCAATTTTTCTTTGGA+TGG - chr8_1:18179019-18179038 Msa1183010:three_prime_UTR 30.0%
TTCTTTGGATGGAAAATTTG+TGG - chr8_1:18179030-18179049 Msa1183010:three_prime_UTR 30.0%
TCTTTGGATGGAAAATTTGT+GGG - chr8_1:18179031-18179050 Msa1183010:three_prime_UTR 30.0%
TGGAAAATTTGTGGGAAAAT+TGG - chr8_1:18179039-18179058 Msa1183010:three_prime_UTR 30.0%
GGAAAATTGGATTTCTTCTT+TGG - chr8_1:18179052-18179071 Msa1183010:three_prime_UTR 30.0%
!! TGCTTACTTTTCCATGTTAT+AGG - chr8_1:18179169-18179188 Msa1183010:exon 30.0%
! CTTTTCCATGTTATAGGAAA+TGG - chr8_1:18179175-18179194 Msa1183010:exon 30.0%
! ACAATCATGTTTCTCTTTTG+AGG - chr8_1:18179253-18179272 Msa1183010:CDS 30.0%
! CAATCATGTTTCTCTTTTGA+GGG - chr8_1:18179254-18179273 Msa1183010:intron 30.0%
AAGGACAAAATGTATTGAGA+AGG + chr8_1:18179440-18179459 None:intergenic 30.0%
! TTTCACACTTGAGTTTTCAA+AGG + chr8_1:18179459-18179478 None:intergenic 30.0%
AGAACATGTGATACTATTAG+GGG + chr8_1:18179486-18179505 None:intergenic 30.0%
GAAGAACATGTGATACTATT+AGG + chr8_1:18179488-18179507 None:intergenic 30.0%
!!! TGTTGTTCAAGGTTGTTTTT+TGG + chr8_1:18179520-18179539 None:intergenic 30.0%
AGAGTTTCTTCTTAGATTCT+TGG + chr8_1:18179582-18179601 None:intergenic 30.0%
AGAGATACAAGATCACATTA+TGG - chr8_1:18179604-18179623 Msa1183010:intron 30.0%
TTAACTAACCTTCTTCAATC+CGG + chr8_1:18179690-18179709 None:intergenic 30.0%
AATAGATATTGGAATGAGCT+TGG - chr8_1:18180045-18180064 Msa1183010:intron 30.0%
!!! TCATTTTGAAACCTTGATCA+AGG - chr8_1:18180254-18180273 Msa1183010:intron 30.0%
ACACGATACGATTTCTTTAT+TGG + chr8_1:18180375-18180394 None:intergenic 30.0%
! TGTGCAGAGTATTAATTGAA+GGG + chr8_1:18180587-18180606 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr8_1:18180721-18180740 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr8_1:18180722-18180741 Msa1183010:intron 30.0%
CATATGAAAGAAAGTGAGTT+AGG - chr8_1:18180762-18180781 Msa1183010:intron 30.0%
!!! TTGGTTTCACTTTTGAAACA+AGG + chr8_1:18181033-18181052 None:intergenic 30.0%
TGACATTGTGAATGATTGAT+TGG + chr8_1:18181052-18181071 None:intergenic 30.0%
! TTGACGCTTTGTTAAAATTG+AGG + chr8_1:18181197-18181216 None:intergenic 30.0%
!! GATAAAGTGCTGAAATGAAA+AGG + chr8_1:18181357-18181376 None:intergenic 30.0%
! ACAAATTTTGTTCAAGTGGT+TGG + chr8_1:18181564-18181583 None:intergenic 30.0%
ACCTATATCTTAGTTAGACA+TGG - chr8_1:18181587-18181606 Msa1183010:intron 30.0%
ACCATGTCTAACTAAGATAT+AGG + chr8_1:18181591-18181610 None:intergenic 30.0%
ATGTGAAACAACTTCAAGAA+AGG - chr8_1:18181971-18181990 Msa1183010:intron 30.0%
TGTGAAACAACTTCAAGAAA+GGG - chr8_1:18181972-18181991 Msa1183010:intron 30.0%
AGCTAGAGAATCATAACAAA+AGG - chr8_1:18182001-18182020 Msa1183010:intron 30.0%
GAGAATCATAACAAAAGGAA+AGG - chr8_1:18182006-18182025 Msa1183010:intron 30.0%
ACCATAGATATTATTCCAAG+AGG - chr8_1:18182115-18182134 Msa1183010:intron 30.0%
CCATAGATATTATTCCAAGA+GGG - chr8_1:18182116-18182135 Msa1183010:intron 30.0%
ATAGACAAGGAAATTCTCAT+TGG - chr8_1:18182165-18182184 Msa1183010:intron 30.0%
AATCCATTGTGAGAAACAAA+AGG - chr8_1:18182188-18182207 Msa1183010:intron 30.0%
AAAAGTTACAATCATTGCTC+AGG - chr8_1:18182299-18182318 Msa1183010:intron 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG - chr8_1:18182591-18182610 Msa1183010:intron 30.0%
! TGTGCAAAGTATTAATTGGA+GGG - chr8_1:18182595-18182614 Msa1183010:intron 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr8_1:18182807-18182826 Msa1183010:intron 30.0%
GGTAACAGTACATACAAATA+TGG - chr8_1:18183362-18183381 Msa1183010:intron 30.0%
GGAAACGAAGAGAAAAAAAA+AGG + chr8_1:18183434-18183453 None:intergenic 30.0%
! TTTTGGTACAAATCATCGTA+GGG + chr8_1:18183892-18183911 None:intergenic 30.0%
!! TTTTTGGTACAAATCATCGT+AGG + chr8_1:18183893-18183912 None:intergenic 30.0%
!!! CAAGAATTGGAGGTTTTATT+TGG + chr8_1:18184068-18184087 None:intergenic 30.0%
AAACCGACATAAACAAGAAT+TGG + chr8_1:18184081-18184100 None:intergenic 30.0%
!! TTATTTTATGATGTGCTGGT+TGG - chr8_1:18184290-18184309 Msa1183010:five_prime_UTR 30.0%
!!! TATTTTATGATGTGCTGGTT+GGG - chr8_1:18184291-18184310 Msa1183010:five_prime_UTR 30.0%
! TGTCATATAGATTCCTCTTT+TGG - chr8_1:18184328-18184347 Msa1183010:five_prime_UTR 30.0%
TTGAGTGTATGTTTCTTGTC+CGG - chr8_1:18178919-18178938 Msa1183010:three_prime_UTR 35.0%
GTCCGGAATTCTTATATGAT+TGG - chr8_1:18178936-18178955 Msa1183010:three_prime_UTR 35.0%
AATACATCTTTGAATTGGGC+AGG - chr8_1:18178974-18178993 Msa1183010:three_prime_UTR 35.0%
AAATTGAGAGAACTCTAGCT+AGG + chr8_1:18179010-18179029 None:intergenic 35.0%
TCCATGTTATAGGAAATGGT+TGG - chr8_1:18179179-18179198 Msa1183010:CDS 35.0%
ACCAACCATTTCCTATAACA+TGG + chr8_1:18179183-18179202 None:intergenic 35.0%
AACTTGTCTTCATCCAAAGA+GGG + chr8_1:18179215-18179234 None:intergenic 35.0%
AAACTTGTCTTCATCCAAAG+AGG + chr8_1:18179216-18179235 None:intergenic 35.0%
AGAATGTGCTCTTGAATTGT+GGG + chr8_1:18179344-18179363 None:intergenic 35.0%
ACATTATGGCTGAGAGAAAA+AGG - chr8_1:18179618-18179637 Msa1183010:intron 35.0%
TAACTAACCTTCTTCAATCC+GGG + chr8_1:18179689-18179708 None:intergenic 35.0%
CTCGATCATAAAGTCATAGT+TGG + chr8_1:18179943-18179962 None:intergenic 35.0%
ACTATGACTTTATGATCGAG+TGG - chr8_1:18179943-18179962 Msa1183010:intron 35.0%
CTTGCTTACTACCCATTATT+TGG - chr8_1:18179978-18179997 Msa1183010:intron 35.0%
GAGAGAATAGGTGTAAACAA+AGG - chr8_1:18180395-18180414 Msa1183010:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr8_1:18182695-18182714 None:intergenic 35.0%
! GTGTGCAGAGTATTAATTGA+AGG + chr8_1:18180588-18180607 None:intergenic 35.0%
ACAAAACCTACCCTATTACA+AGG - chr8_1:18181131-18181150 Msa1183010:CDS 35.0%
CAAAACCTACCCTATTACAA+GGG - chr8_1:18181132-18181151 Msa1183010:CDS 35.0%
ATGTCATGGTAGTAAGTATG+TGG + chr8_1:18181396-18181415 None:intergenic 35.0%
TGGCTAGTAATATTAAGGGA+TGG + chr8_1:18181614-18181633 None:intergenic 35.0%
GATAGCTTCTTGAAGTATGT+AGG + chr8_1:18181947-18181966 None:intergenic 35.0%
! TGTACTTTTCTCCTCTATTG+TGG + chr8_1:18182067-18182086 None:intergenic 35.0%
CCCTCTTGGAATAATATCTA+TGG + chr8_1:18182119-18182138 None:intergenic 35.0%
!! CATCCTTTTGTTTCTCACAA+TGG + chr8_1:18182194-18182213 None:intergenic 35.0%
TGAGAAACAAAAGGATGTTC+TGG - chr8_1:18182197-18182216 Msa1183010:intron 35.0%
! TTTAGAGTGGATGTTCCAAA+AGG + chr8_1:18182282-18182301 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr8_1:18182345-18182364 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+AGG - chr8_1:18182594-18182613 Msa1183010:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr8_1:18182695-18182714 Msa1183010:intron 35.0%
ATGTGGACCTCCAATTATAT+TGG + chr8_1:18182865-18182884 None:intergenic 35.0%
AGATAGGAGAAAAGCTGAAA+AGG - chr8_1:18183091-18183110 Msa1183010:intron 35.0%
GATAGGAGAAAAGCTGAAAA+GGG - chr8_1:18183092-18183111 Msa1183010:intron 35.0%
ATAGGAGAAAAGCTGAAAAG+GGG - chr8_1:18183093-18183112 Msa1183010:intron 35.0%
TTAGAAAAAGAGAGCTTCCA+TGG - chr8_1:18183134-18183153 Msa1183010:intron 35.0%
TTTATACGGATGTGTCCTAA+AGG + chr8_1:18183275-18183294 None:intergenic 35.0%
TTCTCTTCGTTTCCTCATAA+TGG - chr8_1:18183440-18183459 Msa1183010:intron 35.0%
AGAGTTTAAGGACCATTATG+AGG + chr8_1:18183455-18183474 None:intergenic 35.0%
ACAGTACTTGCAAGAGTTTA+AGG + chr8_1:18183467-18183486 None:intergenic 35.0%
TAGACCACTTATAATGAACG+TGG + chr8_1:18183571-18183590 None:intergenic 35.0%
ATTGAACCGACATCAATTGA+TGG - chr8_1:18183726-18183745 Msa1183010:CDS 35.0%
TTTGGTACAAATCATCGTAG+GGG + chr8_1:18183891-18183910 None:intergenic 35.0%
CTTTAGCTATATCATGCAGA+TGG - chr8_1:18183946-18183965 Msa1183010:CDS 35.0%
AGCGTGAATGATCTAGTTAA+TGG - chr8_1:18183986-18184005 Msa1183010:CDS 35.0%
! CCTCCAATTCTTGTTTATGT+CGG - chr8_1:18184075-18184094 Msa1183010:intron 35.0%
TACAAAAAAGAGGCAGATGA+AGG - chr8_1:18184212-18184231 Msa1183010:five_prime_UTR 35.0%
AATGTGCTCTTGAATTGTGG+GGG + chr8_1:18179342-18179361 None:intergenic 40.0%
GAATGTGCTCTTGAATTGTG+GGG + chr8_1:18179343-18179362 None:intergenic 40.0%
GAGAATGTGCTCTTGAATTG+TGG + chr8_1:18179345-18179364 None:intergenic 40.0%
TTCTTGAGAAATGAGGGAGT+TGG + chr8_1:18179384-18179403 None:intergenic 40.0%
CATGTGATACTATTAGGGGA+AGG + chr8_1:18179482-18179501 None:intergenic 40.0%
GAAACCTTGATCAAGGAATG+TGG - chr8_1:18180261-18180280 Msa1183010:intron 40.0%
ATCACCACATTCCTTGATCA+AGG + chr8_1:18180268-18180287 None:intergenic 40.0%
ATCGTATCGTGTGAGAGAAT+AGG - chr8_1:18180383-18180402 Msa1183010:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_1:18180726-18180745 Msa1183010:intron 40.0%
CTTCAACTAAAAATGCGTCG+TGG + chr8_1:18180870-18180889 None:intergenic 40.0%
ACCTCAGTTCCCTTGTAATA+GGG + chr8_1:18181144-18181163 None:intergenic 40.0%
TTCAGAAACATGTGATGTGG+TGG + chr8_1:18181240-18181259 None:intergenic 40.0%
CCTTTCAGAAACATGTGATG+TGG + chr8_1:18181243-18181262 None:intergenic 40.0%
! CCACATCACATGTTTCTGAA+AGG - chr8_1:18181240-18181259 Msa1183010:CDS 40.0%
CAATTAGCAGTTTGGCATGA+TGG + chr8_1:18181322-18181341 None:intergenic 40.0%
GAGCATGACAATTAGCAGTT+TGG + chr8_1:18181330-18181349 None:intergenic 40.0%
! AGTGCTGAAATGAAAAGGAG+AGG + chr8_1:18181352-18181371 None:intergenic 40.0%
GATCAAGTATATGCGTGCTT+TGG + chr8_1:18181542-18181561 None:intergenic 40.0%
GGATGTTCTGGTCAGATTAA+TGG - chr8_1:18182209-18182228 Msa1183010:intron 40.0%
AATAATTATTCCCTCCGTCC+CGG - chr8_1:18182323-18182342 Msa1183010:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr8_1:18182344-18182363 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_1:18180726-18180745 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + chr8_1:18182457-18182476 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_1:18180726-18180745 Msa1183010:intron 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr8_1:18182810-18182829 Msa1183010:intron 40.0%
ATTGAGTGTGACAAGAGAGA+GGG - chr8_1:18183062-18183081 Msa1183010:intron 40.0%
AGAGAGAGGGAAAACAAGAT+AGG - chr8_1:18183075-18183094 Msa1183010:intron 40.0%
TGGACCACGTTCATTATAAG+TGG - chr8_1:18183564-18183583 Msa1183010:CDS 40.0%
ATGATCTAGTTAATGGCCTG+CGG - chr8_1:18183993-18184012 Msa1183010:CDS 40.0%
CCGACATAAACAAGAATTGG+AGG + chr8_1:18184078-18184097 None:intergenic 40.0%
TTGAGAGAACTCTAGCTAGG+AGG + chr8_1:18179007-18179026 None:intergenic 45.0%
TGGTGACAAATCTCCCTCTT+TGG - chr8_1:18179199-18179218 Msa1183010:CDS 45.0%
GGAGACAAGTTCTTAGTGAG+AGG - chr8_1:18179639-18179658 Msa1183010:intron 45.0%
AACCTTCTTCAATCCGGGTA+TGG + chr8_1:18179684-18179703 None:intergenic 45.0%
GTGTACAATGGTACGTAGCA+AGG - chr8_1:18179912-18179931 Msa1183010:intron 45.0%
TACAATGGTACGTAGCAAGG+AGG - chr8_1:18179915-18179934 Msa1183010:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_1:18180725-18180744 Msa1183010:intron 45.0%
CAGTTCCCTTGTAATAGGGT+AGG + chr8_1:18181140-18181159 None:intergenic 45.0%
ACCCTATTACAAGGGAACTG+AGG - chr8_1:18181140-18181159 Msa1183010:CDS 45.0%
GACCTCAGTTCCCTTGTAAT+AGG + chr8_1:18181145-18181164 None:intergenic 45.0%
ATTACAAGGGAACTGAGGTC+TGG - chr8_1:18181145-18181164 Msa1183010:CDS 45.0%
! GTTTGGCATGATGGTGAAGA+GGG + chr8_1:18181313-18181332 None:intergenic 45.0%
! AGTTTGGCATGATGGTGAAG+AGG + chr8_1:18181314-18181333 None:intergenic 45.0%
ATCCCAAGCTTCCACAATAG+AGG - chr8_1:18182053-18182072 Msa1183010:intron 45.0%
CTCCTCTATTGTGGAAGCTT+GGG + chr8_1:18182058-18182077 None:intergenic 45.0%
TCTCCTCTATTGTGGAAGCT+TGG + chr8_1:18182059-18182078 None:intergenic 45.0%
ATTCCAAGAGGGAACTACCT+AGG - chr8_1:18182127-18182146 Msa1183010:intron 45.0%
TTCCAAGAGGGAACTACCTA+GGG - chr8_1:18182128-18182147 Msa1183010:intron 45.0%
AACTACCTAGGGTTGAAGCA+AGG - chr8_1:18182139-18182158 Msa1183010:intron 45.0%
ACTACCTAGGGTTGAAGCAA+GGG - chr8_1:18182140-18182159 Msa1183010:intron 45.0%
TGAAGCAAGGGTCATAGACA+AGG - chr8_1:18182152-18182171 Msa1183010:intron 45.0%
! AGTAGCAGTGTCTTGCCTTT+TGG - chr8_1:18182264-18182283 Msa1183010:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_1:18180725-18180744 Msa1183010:intron 45.0%
GATTGAGTGTGACAAGAGAG+AGG - chr8_1:18183061-18183080 Msa1183010:intron 45.0%
! ATCGTAGGGGAGTTTTCAGT+AGG + chr8_1:18183878-18183897 None:intergenic 45.0%
! ATTCCATGAGATTTTGCCGC+AGG + chr8_1:18184012-18184031 None:intergenic 45.0%
AGGCAGATGAAGGTGAGATT+TGG - chr8_1:18184222-18184241 Msa1183010:five_prime_UTR 45.0%
!! TTTATGATGTGCTGGTTGGG+TGG - chr8_1:18184294-18184313 Msa1183010:five_prime_UTR 45.0%
!!! TATTTATTTTTTATTAAAGT+TGG + chr8_1:18181753-18181772 None:intergenic 5.0%
!!! GTAATATTAAAATAATTTTT+TGG - chr8_1:18182938-18182957 Msa1183010:intron 5.0%
!! AAAAAGAATTATTATTAAAT+TGG - chr8_1:18183341-18183360 Msa1183010:intron 5.0%
CTTCTTCAATCCGGGTATGG+TGG + chr8_1:18179681-18179700 None:intergenic 50.0%
CACCATACCCGGATTGAAGA+AGG - chr8_1:18179679-18179698 Msa1183010:intron 50.0%
AACCCTAGGTAGTTCCCTCT+TGG + chr8_1:18182133-18182152 None:intergenic 50.0%
ATGACCCTTGCTTCAACCCT+AGG + chr8_1:18182147-18182166 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr8_1:18182340-18182359 None:intergenic 50.0%
GCATTGTCTGCCACCATACC+CGG - chr8_1:18179668-18179687 Msa1183010:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr8_1:18182336-18182355 None:intergenic 55.0%
TGGCCTGCGGCAAAATCTCA+TGG - chr8_1:18184006-18184025 Msa1183010:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr8_1:18182337-18182356 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 18178867 18184370 18178867 ID=Msa1183010;Name=Msa1183010
chr8_1 mRNA 18178867 18184370 18178867 ID=Msa1183010-mRNA-1;Parent=Msa1183010;Name=Msa1183010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=171|1|1|1|0.66|0.5|4|310|342
chr8_1 exon 18178867 18179272 18178867 ID=Msa1183010-mRNA-1:exon:6923;Parent=Msa1183010-mRNA-1
chr8_1 exon 18180917 18181303 18180917 ID=Msa1183010-mRNA-1:exon:6922;Parent=Msa1183010-mRNA-1
chr8_1 exon 18183537 18184046 18183537 ID=Msa1183010-mRNA-1:exon:6921;Parent=Msa1183010-mRNA-1
chr8_1 exon 18184164 18184370 18184164 ID=Msa1183010-mRNA-1:exon:6920;Parent=Msa1183010-mRNA-1
chr8_1 five_prime_UTR 18184200 18184370 18184200 ID=Msa1183010-mRNA-1:five_prime_utr;Parent=Msa1183010-mRNA-1
chr8_1 CDS 18184164 18184199 18184164 ID=Msa1183010-mRNA-1:cds;Parent=Msa1183010-mRNA-1
chr8_1 CDS 18183537 18184046 18183537 ID=Msa1183010-mRNA-1:cds;Parent=Msa1183010-mRNA-1
chr8_1 CDS 18180917 18181303 18180917 ID=Msa1183010-mRNA-1:cds;Parent=Msa1183010-mRNA-1
chr8_1 CDS 18179177 18179272 18179177 ID=Msa1183010-mRNA-1:cds;Parent=Msa1183010-mRNA-1
chr8_1 three_prime_UTR 18178867 18179176 18178867 ID=Msa1183010-mRNA-1:three_prime_utr;Parent=Msa1183010-mRNA-1
Gene Sequence

>Msa1183010

ATGGAAAATTTGTGGGAAAATTGGATTTCTTCTTTGGAAATGGTTGGTGACAAATCTCCCTCTTTGGATGAAGACAAGTTTCAACAAGAGAATATGCAACAATCATGTTTCTCTTTTGAGGGTGATAATTCTCAATCTTCAACCATACAATATTTTAACAATATTTTAGATAATGTTTGTGTCACCCCCACAATTCAAGAGCACATTCTCAAGAATAGCAATAGTTCCAACTCCCTCATTTCTCAAGAACATAATTGTGCTACTAATTCACAAAAATTAGCACCTTCTCAATACATTTTGTCCTTTGAAAACTCAAGTGTGAAACCTTCCCCTAATAGTATCACATGTTCTTCTATTATGGTCCAAAAAACAACCTTGAACAACAATATTTTGAGTGAATTACCAAAGACAATTAAGAAAAGAACCAAGAATCTAAGAAGAAACTCTTCAGAGATACAAGATCACATTATGGCTGAGAGAAAAAGGAGACAAGTTCTTAGTGAGAGGTTCATAGCATTGTCTGCCACCATACCCGGATTGAAGAAGACTGATAAGGCCTACATACTTCAAGAAGCTATCAATTATGTGAAACAACTTCAAGAAAGGGTAAATGAGCTAGAGAATCATAACAAAAGGAAAGGAGATTCAGTAATATTCATCAAGAAATCCCAAGCTTCCACAATAGAGGAGAAAAGTACATCATGTGAAGAGAATTCTGATAATGATGACCATAGATATTATTCCAAGAGGGAACTACCTAGGGTTGAAGCAAGGGTCATAGACAAGGAAATTCTCATTGGAATCCATTGTGAGAAACAAAAGGATGTTCTGGTCAGATTAATGGCTTTGCTTCAAAATCTTCATCTATCTCTTGCTAGTAGCAGTGTCTTGCCTTTTGGAACATCCACTCTAAAAGTTACAATCATTGCTCAGATGGATGATGAATATTGCATGAGCGTGAATGATCTAGTTAATGGCCTGCGGCAAAATCTCATGGAATCACGTGACAATAATGATAATATTTCTTAG
Protein sequence

>Msa1183010

MENLWENWISSLEMVGDKSPSLDEDKFQQENMQQSCFSFEGDNSQSSTIQYFNNILDNVCVTPTIQEHILKNSNSSNSLISQEHNCATNSQKLAPSQYILSFENSSVKPSPNSITCSSIMVQKTTLNNNILSELPKTIKKRTKNLRRNSSEIQDHIMAERKRRQVLSERFIALSATIPGLKKTDKAYILQEAINYVKQLQERVNELENHNKRKGDSVIFIKKSQASTIEEKSTSCEENSDNDDHRYYSKRELPRVEARVIDKEILIGIHCEKQKDVLVRLMALLQNLHLSLASSSVLPFGTSTLKVTIIAQMDDEYCMSVNDLVNGLRQNLMESRDNNDNIS*