AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235190 MtrunA17_Chr8g0336681 88.728 346 34 4 1 342 1 345 0.0 585
Msa1235190 MtrunA17_Chr2g0333621 43.787 338 163 8 1 335 1 314 6.68e-70 221
Msa1235190 MtrunA17_Chr2g0333641 39.759 332 173 8 1 331 1 306 1.11e-62 202
Msa1235190 MtrunA17_Chr7g0249811 36.639 363 174 8 1 337 1 333 2.05e-60 197
Msa1235190 MtrunA17_Chr4g0002801 40.510 353 168 10 1 333 1 331 7.82e-59 192
Msa1235190 MtrunA17_Chr4g0002781 38.655 357 188 8 1 333 1 350 4.46e-57 189
Msa1235190 MtrunA17_Chr5g0400661 40.476 252 131 5 98 332 85 334 3.75e-50 170
Msa1235190 MtrunA17_Chr2g0333611 46.766 201 86 5 143 336 33 219 4.27e-49 164
Msa1235190 MtrunA17_Chr5g0400621 47.668 193 93 2 137 328 140 325 3.95e-48 165
Msa1235190 MtrunA17_Chr2g0280161 48.066 181 85 3 150 328 173 346 4.03e-48 165
Msa1235190 MtrunA17_Chr4g0054561 46.524 187 88 4 147 331 148 324 2.40e-47 162
Msa1235190 MtrunA17_Chr4g0054551 45.989 187 89 4 147 331 148 324 3.28e-46 159
Msa1235190 MtrunA17_Chr4g0049331 47.753 178 83 3 153 328 134 303 9.86e-46 158
Msa1235190 MtrunA17_Chr4g0054581 34.637 358 192 10 8 328 18 370 3.98e-44 155
Msa1235190 MtrunA17_Chr6g0468491 37.255 306 156 10 27 328 32 305 2.89e-42 149
Msa1235190 MtrunA17_Chr5g0400671 32.647 340 190 9 1 332 15 323 1.21e-41 147
Msa1235190 MtrunA17_Chr2g0333541 46.154 182 94 3 147 328 87 264 6.88e-40 142
Msa1235190 MtrunA17_Chr2g0307131 38.095 231 119 5 109 333 140 352 1.16e-38 140
Msa1235190 MtrunA17_Chr2g0307141 40.957 188 98 3 153 335 182 361 1.05e-37 138
Msa1235190 MtrunA17_Chr4g0033291 37.879 198 114 2 136 333 137 325 4.96e-37 135
Msa1235190 MtrunA17_Chr4g0033391 38.308 201 115 1 142 342 135 326 1.04e-36 134
Msa1235190 MtrunA17_Chr7g0225901 42.941 170 87 4 146 313 80 241 1.44e-35 129
Msa1235190 MtrunA17_Chr4g0054571 40.234 256 129 8 90 333 87 330 3.25e-35 130
Msa1235190 MtrunA17_Chr4g0033281 34.940 249 138 5 90 333 93 322 1.25e-31 121
Msa1235190 MtrunA17_Chr4g0054621 34.555 191 112 2 138 328 156 333 7.20e-31 119
Msa1235190 MtrunA17_Chr6g0468461 35.526 228 118 4 88 312 110 311 2.34e-30 118
Msa1235190 MtrunA17_Chr5g0400641 40.994 161 87 3 157 316 1 154 5.63e-30 112
Msa1235190 MtrunA17_Chr8g0336671 70.886 79 19 3 120 197 1 76 4.90e-28 104
Msa1235190 MtrunA17_Chr7g0233441 39.474 152 76 2 177 328 57 192 1.97e-27 106
Msa1235190 MtrunA17_Chr4g0002851 38.158 152 70 2 177 328 65 192 4.35e-26 103
Msa1235190 MtrunA17_Chr4g0002831 39.634 164 81 4 166 328 54 200 1.56e-24 99.4
Msa1235190 MtrunA17_Chr1g0185621 27.778 144 94 2 154 291 475 614 3.72e-13 70.5
Msa1235190 MtrunA17_Chr8g0346161 24.051 158 115 2 139 296 276 428 8.34e-12 65.9
Msa1235190 MtrunA17_Chr7g0252041 29.299 157 105 3 156 306 288 444 1.63e-11 65.1
Msa1235190 MtrunA17_Chr5g0411341 27.059 170 117 2 133 296 472 640 1.65e-11 65.5
Msa1235190 MtrunA17_Chr8g0366751 27.326 172 114 3 133 296 441 609 2.83e-11 64.7
Msa1235190 MtrunA17_Chr1g0211081 26.111 180 108 3 139 296 305 481 5.58e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235190 AT4G37850.2 44.898 196 95 4 140 331 138 324 8.87e-47 161
Msa1235190 AT4G37850.1 44.898 196 95 4 140 331 138 324 8.87e-47 161
Msa1235190 AT2G22770.1 41.117 197 107 2 146 333 124 320 7.59e-43 151
Msa1235190 AT2G22760.1 44.693 179 91 4 153 328 118 291 3.82e-41 145
Msa1235190 AT2G22750.2 41.736 242 131 5 95 331 65 301 3.35e-39 141
Msa1235190 AT2G22750.5 41.736 242 131 5 95 331 89 325 4.50e-39 141
Msa1235190 AT2G22750.3 41.736 242 131 5 95 331 93 329 5.40e-39 141
Msa1235190 AT2G22750.4 41.736 242 130 6 95 331 93 328 1.13e-37 137
Msa1235190 AT2G22750.1 41.736 242 130 6 95 331 65 300 1.15e-37 137
Msa1235190 AT2G22760.2 43.827 162 84 3 153 312 118 274 1.43e-35 131
Msa1235190 AT4G17880.1 26.000 200 140 3 97 296 361 552 3.45e-13 70.9
Msa1235190 AT4G29930.1 28.492 179 106 7 155 315 55 229 5.75e-13 68.6
Msa1235190 AT5G46760.1 26.554 177 127 3 121 296 381 555 6.24e-13 70.1
Msa1235190 AT1G63650.3 27.586 174 109 4 130 289 382 552 4.38e-12 67.4
Msa1235190 AT1G63650.1 27.586 174 109 4 130 289 382 552 4.38e-12 67.4
Msa1235190 AT1G63650.2 27.586 174 109 4 130 289 382 552 4.38e-12 67.4
Msa1235190 AT1G32640.1 28.402 169 104 3 136 297 434 592 4.70e-12 67.4
Msa1235190 AT4G09820.1 27.820 133 70 2 155 287 364 470 4.72e-12 67.4
Msa1235190 AT1G12860.2 30.128 156 99 3 156 306 269 419 5.17e-12 67.0
Msa1235190 AT4G29930.2 26.543 162 102 3 155 315 55 200 5.19e-12 65.1
Msa1235190 AT5G41315.3 26.776 183 107 5 130 289 420 598 5.36e-12 67.4
Msa1235190 AT1G12860.1 28.916 166 108 3 156 316 269 429 6.00e-12 67.0
Msa1235190 AT5G41315.2 26.776 183 107 5 130 289 423 601 6.27e-12 67.0
Msa1235190 AT5G41315.1 26.776 183 107 5 130 289 415 593 6.75e-12 67.0
Msa1235190 AT4G29930.6 26.061 165 102 3 155 315 55 203 8.32e-12 64.7
Msa1235190 AT4G29930.3 27.841 176 105 7 155 312 55 226 1.24e-11 64.7
Msa1235190 AT4G29930.7 27.841 176 105 7 155 312 55 226 1.24e-11 64.7
Msa1235190 AT2G46510.1 41.096 73 43 0 136 208 377 449 2.78e-11 65.1
Msa1235190 AT3G26744.1 29.114 158 104 4 155 306 308 463 6.21e-11 63.9
Msa1235190 AT3G26744.4 29.114 158 104 4 155 306 308 463 6.21e-11 63.9
Msa1235190 AT3G26744.2 29.114 158 104 4 155 306 308 463 6.21e-11 63.9
Msa1235190 AT3G26744.6 29.114 158 104 4 155 306 308 463 6.26e-11 63.9
Msa1235190 AT4G29930.5 25.786 159 101 3 155 312 55 197 9.49e-11 61.6

Find 89 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGGATGGAAAATTTA+TGG 0.109787 8_2:+12996230 Msa1235190:exon
TGGAAAATTTATGGGAAAAT+TGG 0.123911 8_2:+12996239 Msa1235190:CDS
GGAAAATTGGATTTCTTCTT+TGG 0.172020 8_2:+12996252 Msa1235190:CDS
GAAGAACATGTGACACTATT+AGG 0.173209 8_2:-12996683 None:intergenic
AGAGTTTCTTCTTAGATTCT+TGG 0.212913 8_2:-12996777 None:intergenic
TGTCATATAGATTCCTCTTT+TGG 0.216258 8_2:+13001244 Msa1235190:three_prime_UTR
AGTAGCAGTGTCTTGCCTTT+TGG 0.235787 8_2:+12999458 Msa1235190:CDS
GGATGTTCTGGTCAGATTAA+TGG 0.246169 8_2:+12999403 Msa1235190:CDS
TGTCACATGTTCTTCTATTA+TGG 0.264783 8_2:+12996691 Msa1235190:CDS
CTCCTCTATTGTGGAAGCTT+GGG 0.310037 8_2:-12999249 None:intergenic
GCTAGAAGCCATCTTTGAAT+TGG 0.310979 8_2:+12996169 Msa1235190:five_prime_UTR
ACATTATGGCTGAGAGAAAA+AGG 0.316242 8_2:+12996816 Msa1235190:CDS
CCCTCTTGGAATAATATCTA+TGG 0.320492 8_2:-12999310 None:intergenic
TCTTTGGATGGAAAATTTAT+GGG 0.339096 8_2:+12996231 Msa1235190:exon
AAACCGACATAAACAAGAAT+TGG 0.346505 8_2:-13000994 None:intergenic
AATATTGTTAAAATATTGTA+TGG 0.351091 8_2:-12996495 None:intergenic
TGGTGACAAATCTCCCTCTT+TGG 0.360825 8_2:+12996397 Msa1235190:CDS
AAGAACATGTGACACTATTA+GGG 0.364487 8_2:-12996682 None:intergenic
TCTCCTCTATTGTGGAAGCT+TGG 0.367214 8_2:-12999250 None:intergenic
TGAATCCAAATGTACATGTT+TGG 0.371006 8_2:+12996056 None:intergenic
ACTCAAAATATTGTTGTTCA+AGG 0.374555 8_2:-12996726 None:intergenic
TGAGAAACAAAAGGATGTTC+TGG 0.375096 8_2:+12999391 Msa1235190:CDS
AGAATGTTCTCTTGAATTGT+GGG 0.399894 8_2:-12996539 None:intergenic
AGCGTGAATGATCTAGTTAA+TGG 0.408638 8_2:+13000902 Msa1235190:CDS
AGGCAGATGAAGGTGAGATT+TGG 0.409209 8_2:+13001138 Msa1235190:three_prime_UTR
GACCAATCATCTAAGAATTC+CGG 0.409667 8_2:-12996138 None:intergenic
CAGGAAACATACACTCAAAT+GGG 0.412210 8_2:-12996114 None:intergenic
AGAGATACAAGATCACATTA+TGG 0.415532 8_2:+12996802 Msa1235190:CDS
GTCCGGAATTCTTAGATGAT+TGG 0.416610 8_2:+12996136 Msa1235190:five_prime_UTR
GAGAATGTTCTCTTGAATTG+TGG 0.419754 8_2:-12996540 None:intergenic
TTAACTAACCTTCTTCAATC+CGG 0.424112 8_2:-12996885 None:intergenic
ATAATGATAATATTTCTTAG+AGG 0.424597 8_2:+13000957 Msa1235190:CDS
CTAGAAGCCATCTTTGAATT+GGG 0.429577 8_2:+12996170 Msa1235190:five_prime_UTR
ACAGGAAACATACACTCAAA+TGG 0.432299 8_2:-12996115 None:intergenic
ATGTATAAAGCTATGTATGA+TGG 0.433061 8_2:+13001059 Msa1235190:three_prime_UTR
AACCCTAGGTAGTTCCCTCT+TGG 0.443975 8_2:-12999324 None:intergenic
TTTGTTTGTTTGTAATGAAA+GGG 0.455439 8_2:+13001085 Msa1235190:three_prime_UTR
ATTTGTTTGTTTGTAATGAA+AGG 0.467962 8_2:+13001084 Msa1235190:three_prime_UTR
TTGAGTGTATGTTTCCTGTC+CGG 0.470026 8_2:+12996119 Msa1235190:five_prime_UTR
GTGCCTGCCCAATTCAAAGA+TGG 0.473650 8_2:-12996177 None:intergenic
ATCCCAAGCTTCCACAATAG+AGG 0.477093 8_2:+12999247 Msa1235190:CDS
CATTTACATATAGACTGATA+AGG 0.479352 8_2:+12999115 Msa1235190:intron
ATGTGAAACAACTTCAAGAA+AGG 0.479598 8_2:+12999165 Msa1235190:CDS
AACCTTCTTCAATCCGGGTA+TGG 0.482099 8_2:-12996879 None:intergenic
AAAAGTTACAATCATTGCTC+AGG 0.483463 8_2:+12999493 Msa1235190:CDS
GATTAATGTATGATAAGATT+TGG 0.484478 8_2:+13001164 Msa1235190:three_prime_UTR
AGCTAGAGAATCATAACAAA+AGG 0.486256 8_2:+12999195 Msa1235190:CDS
ATAGACAAGGAAATTCTCAT+TGG 0.487223 8_2:+12999359 Msa1235190:CDS
TAACTAACCTTCTTCAATCC+GGG 0.489242 8_2:-12996884 None:intergenic
AAGCCATCTTTGAATTGGGC+AGG 0.489610 8_2:+12996174 Msa1235190:five_prime_UTR
TTTAGAGTGGATGTTCCAAA+AGG 0.493560 8_2:-12999473 None:intergenic
GATAGCTTCTTGAAGTATGT+AGG 0.500256 8_2:-12999138 None:intergenic
ATGACCCTTGCTTCAACCCT+AGG 0.508087 8_2:-12999338 None:intergenic
CCTCCAATTCTTGTTTATGT+CGG 0.514798 8_2:+13000991 Msa1235190:three_prime_UTR
AATTATGTTCTTGAGAAATG+AGG 0.519126 8_2:-12996586 None:intergenic
GCATTGTCTGCCACCATACC+CGG 0.522189 8_2:+12996866 Msa1235190:CDS
TGGCCTGCGGCAAAATCTCA+TGG 0.524286 8_2:+13000922 Msa1235190:CDS
TTCCAAGAGGGAACTACCTA+GGG 0.525124 8_2:+12999322 Msa1235190:CDS
AATCCATTGTGAGAAACAAA+AGG 0.526613 8_2:+12999382 Msa1235190:CDS
TGTGAAACAACTTCAAGAAA+GGG 0.529417 8_2:+12999166 Msa1235190:CDS
CACCATACCCGGATTGAAGA+AGG 0.530151 8_2:+12996877 Msa1235190:CDS
CCGACATAAACAAGAATTGG+AGG 0.531310 8_2:-13000991 None:intergenic
AACTACCTAGGGTTGAAGCA+AGG 0.539098 8_2:+12999333 Msa1235190:CDS
ATTCCAAGAGGGAACTACCT+AGG 0.539100 8_2:+12999321 Msa1235190:CDS
TGTATAAAGCTATGTATGAT+GGG 0.542335 8_2:+13001060 Msa1235190:three_prime_UTR
TAATGATAATATTTCTTAGA+GGG 0.544633 8_2:+13000958 Msa1235190:exon
ATTATGTTCTTGAGAAATGA+GGG 0.546811 8_2:-12996585 None:intergenic
TTCTTGAGAAATGAGGGAGT+TGG 0.554351 8_2:-12996579 None:intergenic
ATCATCTAAGAATTCCGGAC+AGG 0.557419 8_2:-12996133 None:intergenic
AAATTTAGAGAACTCTAGCT+AGG 0.560456 8_2:-12996207 None:intergenic
TTTATGATGTGCTGGTTGGG+TGG 0.563787 8_2:+13001210 Msa1235190:three_prime_UTR
ACTACCTAGGGTTGAAGCAA+GGG 0.564338 8_2:+12999334 Msa1235190:CDS
AAACTTGTCTTCATCCAAAG+AGG 0.569979 8_2:-12996411 None:intergenic
GGAGACAAGTTCTTAGTGAG+AGG 0.572609 8_2:+12996837 Msa1235190:CDS
GAATGTTCTCTTGAATTGTG+GGG 0.574490 8_2:-12996538 None:intergenic
CTTCTTCAATCCGGGTATGG+TGG 0.579713 8_2:-12996876 None:intergenic
AAAGACAAAATGTATTGAGA+AGG 0.581821 8_2:-12996635 None:intergenic
TTGGAGTATTCTCCATCTAA+CGG 0.593483 8_2:+12996075 Msa1235190:five_prime_UTR
AACTTGTCTTCATCCAAAGA+GGG 0.612368 8_2:-12996410 None:intergenic
ACCATAGATATTATTCCAAG+AGG 0.614334 8_2:+12999309 Msa1235190:CDS
TCCATGTTATAGGAAATGGT+TGG 0.616814 8_2:+12996377 Msa1235190:intron
CATGTGACACTATTAGGGGA+AGG 0.617663 8_2:-12996677 None:intergenic
CCATAGATATTATTCCAAGA+GGG 0.619879 8_2:+12999310 Msa1235190:CDS
TTTAGAGAACTCTAGCTAGG+AGG 0.626794 8_2:-12996204 None:intergenic
AATGTTCTCTTGAATTGTGG+GGG 0.666781 8_2:-12996537 None:intergenic
TGAAGCAAGGGTCATAGACA+AGG 0.670455 8_2:+12999346 Msa1235190:CDS
ATGATCTAGTTAATGGCCTG+CGG 0.675515 8_2:+13000909 Msa1235190:CDS
AGGAAACATACACTCAAATG+GGG 0.693946 8_2:-12996113 None:intergenic
AGAACATGTGACACTATTAG+GGG 0.723595 8_2:-12996681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAAAATAATAAAAT+TGG - chr8_2:12998828-12998847 None:intergenic 0.0%
!! AATATTGTTAAAATATTGTA+TGG - chr8_2:12996498-12996517 None:intergenic 10.0%
!!! TTTTTTTTTTACCAAATAAT+GGG - chr8_2:12997190-12997209 None:intergenic 10.0%
!!! TTTTTTTTTTTACCAAATAA+TGG - chr8_2:12997191-12997210 None:intergenic 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG - chr8_2:12997814-12997833 None:intergenic 10.0%
!! AAATTATCATTATTAACTAT+TGG - chr8_2:12997838-12997857 None:intergenic 10.0%
!! AATAGTTAATAATGATAATT+TGG + chr8_2:12997837-12997856 Msa1235190:intron 10.0%
!!! TTTTTTTTTTTTCTTCAAAA+AGG + chr8_2:12998301-12998320 Msa1235190:intron 10.0%
!! AGAAAAATGTATAAATAAAA+GGG - chr8_2:12999685-12999704 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+AGG - chr8_2:12999686-12999705 None:intergenic 10.0%
!!! TTTTTTAAACATAAACTTTA+AGG + chr8_2:12999917-12999936 Msa1235190:intron 10.0%
!!! TTTTTAAACATAAACTTTAA+GGG + chr8_2:12999918-12999937 Msa1235190:intron 10.0%
!!! TTTTGATGATTTTATTTTTA+AGG + chr8_2:13000112-13000131 Msa1235190:intron 10.0%
!! TTATTATTTCAATTGTATAA+AGG - chr8_2:13000575-13000594 None:intergenic 10.0%
!! TTATATATCAATGATATTGA+GGG - chr8_2:12996925-12996944 None:intergenic 15.0%
!! TTTATATATCAATGATATTG+AGG - chr8_2:12996926-12996945 None:intergenic 15.0%
!!! TAGTAATTTTCAACATAAAA+TGG + chr8_2:12997313-12997332 Msa1235190:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr8_2:12997711-12997730 None:intergenic 15.0%
!! TTGAAGAAAAAAAAAAAAAG+TGG - chr8_2:12998299-12998318 None:intergenic 15.0%
!!! AAAAAAAACATATTCTGAAA+AGG + chr8_2:12998466-12998485 Msa1235190:intron 15.0%
!!! AATTTTTGTCAAAATTACAA+CGG - chr8_2:12998668-12998687 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr8_2:12999621-12999640 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr8_2:12999622-12999641 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG + chr8_2:12999722-12999741 Msa1235190:intron 15.0%
!!! ATTTCATTTTCCAATATAAT+TGG + chr8_2:12999771-12999790 Msa1235190:intron 15.0%
!! ATTATTCAAATATTACTCTT+TGG - chr8_2:13000162-13000181 None:intergenic 15.0%
!! TAACTAAATGTATCTTTATA+CGG - chr8_2:13000208-13000227 None:intergenic 15.0%
!! GAATTAAGAGAAATTTAATA+TGG + chr8_2:13000462-13000481 Msa1235190:intron 15.0%
!!! GTTTTAATCAAAATATAAGA+AGG + chr8_2:13000666-13000685 Msa1235190:intron 15.0%
!! TATTCAAAATTAAAGAACTT+TGG - chr8_2:13000694-13000713 None:intergenic 15.0%
!!! TAATTTTAAGTATTGATTCA+TGG + chr8_2:13000743-13000762 Msa1235190:intron 15.0%
!!! AAAGACTATATACTTATTTT+TGG - chr8_2:13000827-13000846 None:intergenic 15.0%
!! ATAATGATAATATTTCTTAG+AGG + chr8_2:13000957-13000976 Msa1235190:CDS 15.0%
!! TAATGATAATATTTCTTAGA+GGG + chr8_2:13000958-13000977 Msa1235190:exon 15.0%
!! TAAATCTAAATACAAAAAAG+AGG + chr8_2:13001118-13001137 Msa1235190:three_prime_UTR 15.0%
!! AATAAATTATTGAACACATG+TGG - chr8_2:12997004-12997023 None:intergenic 20.0%
!! GTTCATAAAACTAATTGAAA+GGG - chr8_2:12997075-12997094 None:intergenic 20.0%
!! TGTACACAGAAAAAAAAAAA+AGG - chr8_2:12997097-12997116 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTGTACAA+TGG + chr8_2:12997098-12997117 Msa1235190:intron 20.0%
!! GAAAATACTAGAATAGATAT+TGG + chr8_2:12997233-12997252 Msa1235190:intron 20.0%
!!! ATTTCTTTATTGGTTGTTAA+CGG - chr8_2:12997563-12997582 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr8_2:12997751-12997770 None:intergenic 20.0%
!!! TTGCTTTTAAAATGTATGTT+TGG - chr8_2:12998143-12998162 None:intergenic 20.0%
!!! TTATACAAATTTTGTTCAAG+TGG - chr8_2:12998762-12998781 None:intergenic 20.0%
!! AAATTGGCTAGTAATATTAA+GGG - chr8_2:12998812-12998831 None:intergenic 20.0%
!! AAAATTGGCTAGTAATATTA+AGG - chr8_2:12998813-12998832 None:intergenic 20.0%
!! AAAGTTATATAAAGAACACA+AGG - chr8_2:12999047-12999066 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr8_2:12999552-12999571 None:intergenic 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr8_2:12999574-12999593 None:intergenic 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr8_2:12999575-12999594 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG + chr8_2:12999721-12999740 Msa1235190:intron 20.0%
!! GAAATTGTTTCAATAAAATG+TGG - chr8_2:12999801-12999820 None:intergenic 20.0%
!! AATCATCAAAAAAAGAAGAA+AGG - chr8_2:13000103-13000122 None:intergenic 20.0%
!! AATAATCAAAAACAACCTTT+AGG + chr8_2:13000176-13000195 Msa1235190:intron 20.0%
!!! AAGTTTGTAGAAATTTTGTT+TGG + chr8_2:13001019-13001038 Msa1235190:three_prime_UTR 20.0%
!! ATTTGTTTGTTTGTAATGAA+AGG + chr8_2:13001084-13001103 Msa1235190:three_prime_UTR 20.0%
!! TTTGTTTGTTTGTAATGAAA+GGG + chr8_2:13001085-13001104 Msa1235190:three_prime_UTR 20.0%
!! GATTAATGTATGATAAGATT+TGG + chr8_2:13001164-13001183 Msa1235190:three_prime_UTR 20.0%
!!! TTTTAATTTCTACCGTTAGA+TGG - chr8_2:12996090-12996109 None:intergenic 25.0%
!! GAGTTCTCTAAATTTTTCTT+TGG + chr8_2:12996215-12996234 Msa1235190:five_prime_UTR 25.0%
!! TCTCTAAATTTTTCTTTGGA+TGG + chr8_2:12996219-12996238 Msa1235190:exon 25.0%
! TTCTTTGGATGGAAAATTTA+TGG + chr8_2:12996230-12996249 Msa1235190:exon 25.0%
! TCTTTGGATGGAAAATTTAT+GGG + chr8_2:12996231-12996250 Msa1235190:exon 25.0%
! TGGAAAATTTATGGGAAAAT+TGG + chr8_2:12996239-12996258 Msa1235190:CDS 25.0%
! ATTATGTTCTTGAGAAATGA+GGG - chr8_2:12996588-12996607 None:intergenic 25.0%
! AATTATGTTCTTGAGAAATG+AGG - chr8_2:12996589-12996608 None:intergenic 25.0%
! AAAGACAAAATGTATTGAGA+AGG - chr8_2:12996638-12996657 None:intergenic 25.0%
!! ACTCAAAATATTGTTGTTCA+AGG - chr8_2:12996729-12996748 None:intergenic 25.0%
!! GTTCTTTTCTTAATTGTCTT+TGG - chr8_2:12996758-12996777 None:intergenic 25.0%
! GGTTCATAAAACTAATTGAA+AGG - chr8_2:12997076-12997095 None:intergenic 25.0%
! GGTTTCAAAATGATATGATT+CGG - chr8_2:12997446-12997465 None:intergenic 25.0%
! CATATGAAAGAAAGTAAGTT+AGG + chr8_2:12997960-12997979 Msa1235190:intron 25.0%
! ACAATGAATAATTGATGTCA+TGG - chr8_2:12998604-12998623 None:intergenic 25.0%
! TTATATGATTGTCAGAATCA+CGG + chr8_2:12998638-12998657 Msa1235190:intron 25.0%
! ATATAAAGAACACAAGGTAA+AGG - chr8_2:12999041-12999060 None:intergenic 25.0%
! CATTTACATATAGACTGATA+AGG + chr8_2:12999115-12999134 Msa1235190:intron 25.0%
!!! AATGATTGTAACTTTTAGAG+TGG - chr8_2:12999489-12999508 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr8_2:12999553-12999572 None:intergenic 25.0%
! TGTATAAATAAAAGGGAAAG+TGG - chr8_2:12999678-12999697 None:intergenic 25.0%
!! TCATTTTCCAATATAATTGG+AGG + chr8_2:12999774-12999793 Msa1235190:intron 25.0%
! AAATTATTTCAAGATGACCA+TGG - chr8_2:13000073-13000092 None:intergenic 25.0%
! ATGTACGAGTTTCATAAAAA+AGG - chr8_2:13000426-13000445 None:intergenic 25.0%
! TTAAAACCATCAATTGATGT+CGG - chr8_2:13000653-13000672 None:intergenic 25.0%
!!! ACTAGATATTTTAATGACGA+TGG - chr8_2:13000724-13000743 None:intergenic 25.0%
!!! TTTTAAGTATTGATTCATGG+TGG + chr8_2:13000746-13000765 Msa1235190:intron 25.0%
! ATGTATAAAGCTATGTATGA+TGG + chr8_2:13001059-13001078 Msa1235190:three_prime_UTR 25.0%
! TGTATAAAGCTATGTATGAT+GGG + chr8_2:13001060-13001079 Msa1235190:three_prime_UTR 25.0%
!!! ATGATTATTTTATGATGTGC+TGG + chr8_2:13001202-13001221 Msa1235190:three_prime_UTR 25.0%
! ATAAACGAAAAATCCAAAAG+AGG - chr8_2:13001260-13001279 None:intergenic 25.0%
AAATTTAGAGAACTCTAGCT+AGG - chr8_2:12996210-12996229 None:intergenic 30.0%
GGAAAATTGGATTTCTTCTT+TGG + chr8_2:12996252-12996271 Msa1235190:CDS 30.0%
!! TGCTTACTTTTCCATGTTAT+AGG + chr8_2:12996367-12996386 Msa1235190:intron 30.0%
! CTTTTCCATGTTATAGGAAA+TGG + chr8_2:12996373-12996392 Msa1235190:intron 30.0%
! ACAATCATGTTTCTCTTTTG+AGG + chr8_2:12996451-12996470 Msa1235190:CDS 30.0%
! CAATCATGTTTCTCTTTTGA+GGG + chr8_2:12996452-12996471 Msa1235190:CDS 30.0%
AGAATGTTCTCTTGAATTGT+GGG - chr8_2:12996542-12996561 None:intergenic 30.0%
AAGAACATGTGACACTATTA+GGG - chr8_2:12996685-12996704 None:intergenic 30.0%
TGTCACATGTTCTTCTATTA+TGG + chr8_2:12996691-12996710 Msa1235190:CDS 30.0%
!!! TGTTGTTCAAGGTTGTTTTT+TGG - chr8_2:12996718-12996737 None:intergenic 30.0%
AGAGTTTCTTCTTAGATTCT+TGG - chr8_2:12996780-12996799 None:intergenic 30.0%
AGAGATACAAGATCACATTA+TGG + chr8_2:12996802-12996821 Msa1235190:CDS 30.0%
TTAACTAACCTTCTTCAATC+CGG - chr8_2:12996888-12996907 None:intergenic 30.0%
AATAGATATTGGAATGAGCT+TGG + chr8_2:12997244-12997263 Msa1235190:intron 30.0%
!!! TCATTTTGAAACCTTGATCA+AGG + chr8_2:12997453-12997472 Msa1235190:intron 30.0%
ACACGATACGATTTCTTTAT+TGG - chr8_2:12997573-12997592 None:intergenic 30.0%
! TGTGCAGAGTATTAATTGAA+GGG - chr8_2:12997785-12997804 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr8_2:12997919-12997938 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr8_2:12997920-12997939 Msa1235190:intron 30.0%
!!! TTGGTTTCACTTTTGAAACA+AGG - chr8_2:12998231-12998250 None:intergenic 30.0%
TGACATTGTGAATGATTGAT+TGG - chr8_2:12998250-12998269 None:intergenic 30.0%
! TTGACGCTTTGTTAAAATTG+AGG - chr8_2:12998395-12998414 None:intergenic 30.0%
!! GATAAAGTGCTGAAATGAAA+AGG - chr8_2:12998555-12998574 None:intergenic 30.0%
! ACAAATTTTGTTCAAGTGGT+TGG - chr8_2:12998758-12998777 None:intergenic 30.0%
ACCTATATCTTAGTTAGACA+TGG + chr8_2:12998781-12998800 Msa1235190:intron 30.0%
ACCATGTCTAACTAAGATAT+AGG - chr8_2:12998785-12998804 None:intergenic 30.0%
ATGTGAAACAACTTCAAGAA+AGG + chr8_2:12999165-12999184 Msa1235190:CDS 30.0%
TGTGAAACAACTTCAAGAAA+GGG + chr8_2:12999166-12999185 Msa1235190:CDS 30.0%
AGCTAGAGAATCATAACAAA+AGG + chr8_2:12999195-12999214 Msa1235190:CDS 30.0%
ACCATAGATATTATTCCAAG+AGG + chr8_2:12999309-12999328 Msa1235190:CDS 30.0%
CCATAGATATTATTCCAAGA+GGG + chr8_2:12999310-12999329 Msa1235190:CDS 30.0%
ATAGACAAGGAAATTCTCAT+TGG + chr8_2:12999359-12999378 Msa1235190:CDS 30.0%
AATCCATTGTGAGAAACAAA+AGG + chr8_2:12999382-12999401 Msa1235190:CDS 30.0%
AAAAGTTACAATCATTGCTC+AGG + chr8_2:12999493-12999512 Msa1235190:CDS 30.0%
TTGTGTCAATTAAATTGGGA+CGG + chr8_2:12999726-12999745 Msa1235190:intron 30.0%
GGTAACAGTACATACAAATA+TGG + chr8_2:13000281-13000300 Msa1235190:intron 30.0%
GGAAACGAAGAGAAAAAAAA+AGG - chr8_2:13000352-13000371 None:intergenic 30.0%
! TTTTGGTACAAATCATCGTA+GGG - chr8_2:13000810-13000829 None:intergenic 30.0%
!! TTTTTGGTACAAATCATCGT+AGG - chr8_2:13000811-13000830 None:intergenic 30.0%
!!! CAAGAATTGGAGGTTTTATT+TGG - chr8_2:13000984-13001003 None:intergenic 30.0%
AAACCGACATAAACAAGAAT+TGG - chr8_2:13000997-13001016 None:intergenic 30.0%
!! TTATTTTATGATGTGCTGGT+TGG + chr8_2:13001206-13001225 Msa1235190:three_prime_UTR 30.0%
!!! TATTTTATGATGTGCTGGTT+GGG + chr8_2:13001207-13001226 Msa1235190:three_prime_UTR 30.0%
! TGTCATATAGATTCCTCTTT+TGG + chr8_2:13001244-13001263 Msa1235190:three_prime_UTR 30.0%
! TTGGAGTATTCTCCATCTAA+CGG + chr8_2:12996075-12996094 Msa1235190:five_prime_UTR 35.0%
AGGAAACATACACTCAAATG+GGG - chr8_2:12996116-12996135 None:intergenic 35.0%
CAGGAAACATACACTCAAAT+GGG - chr8_2:12996117-12996136 None:intergenic 35.0%
ACAGGAAACATACACTCAAA+TGG - chr8_2:12996118-12996137 None:intergenic 35.0%
GACCAATCATCTAAGAATTC+CGG - chr8_2:12996141-12996160 None:intergenic 35.0%
CTAGAAGCCATCTTTGAATT+GGG + chr8_2:12996170-12996189 Msa1235190:five_prime_UTR 35.0%
TCCATGTTATAGGAAATGGT+TGG + chr8_2:12996377-12996396 Msa1235190:intron 35.0%
ACCAACCATTTCCTATAACA+TGG - chr8_2:12996381-12996400 None:intergenic 35.0%
AACTTGTCTTCATCCAAAGA+GGG - chr8_2:12996413-12996432 None:intergenic 35.0%
AAACTTGTCTTCATCCAAAG+AGG - chr8_2:12996414-12996433 None:intergenic 35.0%
AATGTTCTCTTGAATTGTGG+GGG - chr8_2:12996540-12996559 None:intergenic 35.0%
GAATGTTCTCTTGAATTGTG+GGG - chr8_2:12996541-12996560 None:intergenic 35.0%
GAGAATGTTCTCTTGAATTG+TGG - chr8_2:12996543-12996562 None:intergenic 35.0%
AGAACATGTGACACTATTAG+GGG - chr8_2:12996684-12996703 None:intergenic 35.0%
GAAGAACATGTGACACTATT+AGG - chr8_2:12996686-12996705 None:intergenic 35.0%
ACATTATGGCTGAGAGAAAA+AGG + chr8_2:12996816-12996835 Msa1235190:CDS 35.0%
TAACTAACCTTCTTCAATCC+GGG - chr8_2:12996887-12996906 None:intergenic 35.0%
CTCGATCATAAAGTCATAGT+TGG - chr8_2:12997141-12997160 None:intergenic 35.0%
ACTATGACTTTATGATCGAG+TGG + chr8_2:12997141-12997160 Msa1235190:intron 35.0%
CTTGCTTACTACCCATTATT+TGG + chr8_2:12997176-12997195 Msa1235190:intron 35.0%
GAGAGAATAGGTGTAAACAA+AGG + chr8_2:12997593-12997612 Msa1235190:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr8_2:12997685-12997704 None:intergenic 35.0%
! GTGTGCAGAGTATTAATTGA+AGG - chr8_2:12997786-12997805 None:intergenic 35.0%
ACAAAACCTACCCTATTACA+AGG + chr8_2:12998329-12998348 Msa1235190:intron 35.0%
CAAAACCTACCCTATTACAA+GGG + chr8_2:12998330-12998349 Msa1235190:intron 35.0%
ATTGATGTCATGGTAGTATG+TGG - chr8_2:12998594-12998613 None:intergenic 35.0%
TGGCTAGTAATATTAAGGGA+TGG - chr8_2:12998808-12998827 None:intergenic 35.0%
GATAGCTTCTTGAAGTATGT+AGG - chr8_2:12999141-12999160 None:intergenic 35.0%
! TGTACTTTTCTCCTCTATTG+TGG - chr8_2:12999261-12999280 None:intergenic 35.0%
CCCTCTTGGAATAATATCTA+TGG - chr8_2:12999313-12999332 None:intergenic 35.0%
!! CATCCTTTTGTTTCTCACAA+TGG - chr8_2:12999388-12999407 None:intergenic 35.0%
TGAGAAACAAAAGGATGTTC+TGG + chr8_2:12999391-12999410 Msa1235190:CDS 35.0%
! TTTAGAGTGGATGTTCCAAA+AGG - chr8_2:12999476-12999495 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr8_2:12999539-12999558 None:intergenic 35.0%
ATGTGGACCTCCAATTATAT+TGG - chr8_2:12999784-12999803 None:intergenic 35.0%
AGATAGGAGAAAAGCTGAAA+AGG + chr8_2:13000010-13000029 Msa1235190:intron 35.0%
GATAGGAGAAAAGCTGAAAA+GGG + chr8_2:13000011-13000030 Msa1235190:intron 35.0%
ATAGGAGAAAAGCTGAAAAG+GGG + chr8_2:13000012-13000031 Msa1235190:intron 35.0%
TTAGAAAAAGAGAGCTTCCA+TGG + chr8_2:13000053-13000072 Msa1235190:intron 35.0%
TTTATACGGATGTGTCCTAA+AGG - chr8_2:13000194-13000213 None:intergenic 35.0%
TTCTCTTCGTTTCCTCATAA+TGG + chr8_2:13000358-13000377 Msa1235190:intron 35.0%
AGAGTTTAAGGACCATTATG+AGG - chr8_2:13000373-13000392 None:intergenic 35.0%
ACAGTACTTGCAAGAGTTTA+AGG - chr8_2:13000385-13000404 None:intergenic 35.0%
TAGACCACTTATAATGAACG+TGG - chr8_2:13000489-13000508 None:intergenic 35.0%
ATTGAACCGACATCAATTGA+TGG + chr8_2:13000644-13000663 Msa1235190:intron 35.0%
TCATCTTTATAAGTGGTCTG+TGG - chr8_2:13000773-13000792 None:intergenic 35.0%
CAGTAGGTCATCTTTATAAG+TGG - chr8_2:13000780-13000799 None:intergenic 35.0%
TTTGGTACAAATCATCGTAG+GGG - chr8_2:13000809-13000828 None:intergenic 35.0%
CTTTAGCTATATCATGCAGA+TGG + chr8_2:13000862-13000881 Msa1235190:intron 35.0%
AGCGTGAATGATCTAGTTAA+TGG + chr8_2:13000902-13000921 Msa1235190:CDS 35.0%
! CCTCCAATTCTTGTTTATGT+CGG + chr8_2:13000991-13001010 Msa1235190:three_prime_UTR 35.0%
TACAAAAAAGAGGCAGATGA+AGG + chr8_2:13001128-13001147 Msa1235190:three_prime_UTR 35.0%
TTGAGTGTATGTTTCCTGTC+CGG + chr8_2:12996119-12996138 Msa1235190:five_prime_UTR 40.0%
ATCATCTAAGAATTCCGGAC+AGG - chr8_2:12996136-12996155 None:intergenic 40.0%
GTCCGGAATTCTTAGATGAT+TGG + chr8_2:12996136-12996155 Msa1235190:five_prime_UTR 40.0%
GCTAGAAGCCATCTTTGAAT+TGG + chr8_2:12996169-12996188 Msa1235190:five_prime_UTR 40.0%
TTTAGAGAACTCTAGCTAGG+AGG - chr8_2:12996207-12996226 None:intergenic 40.0%
TTCTTGAGAAATGAGGGAGT+TGG - chr8_2:12996582-12996601 None:intergenic 40.0%
GAAACCTTGATCAAGGAATG+TGG + chr8_2:12997460-12997479 Msa1235190:intron 40.0%
ATCACCACATTCCTTGATCA+AGG - chr8_2:12997467-12997486 None:intergenic 40.0%
ATCGTATCGTGTGAGAGAAT+AGG + chr8_2:12997581-12997600 Msa1235190:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_2:12997924-12997943 Msa1235190:intron 40.0%
CTTCAACTAAAAATGCGTCG+TGG - chr8_2:12998068-12998087 None:intergenic 40.0%
ACCTCAGTTCCCTTGTAATA+GGG - chr8_2:12998342-12998361 None:intergenic 40.0%
TTCAGAAACATGTGATGTGG+TGG - chr8_2:12998438-12998457 None:intergenic 40.0%
CCTTTCAGAAACATGTGATG+TGG - chr8_2:12998441-12998460 None:intergenic 40.0%
! CCACATCACATGTTTCTGAA+AGG + chr8_2:12998438-12998457 Msa1235190:intron 40.0%
CAATTAGCAGTTTGGCATGA+TGG - chr8_2:12998520-12998539 None:intergenic 40.0%
GAGCATGACAATTAGCAGTT+TGG - chr8_2:12998528-12998547 None:intergenic 40.0%
! AGTGCTGAAATGAAAAGGAG+AGG - chr8_2:12998550-12998569 None:intergenic 40.0%
GATCAAGTATATGCGTGCTT+TGG - chr8_2:12998736-12998755 None:intergenic 40.0%
GGATGTTCTGGTCAGATTAA+TGG + chr8_2:12999403-12999422 Msa1235190:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr8_2:12999538-12999557 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG + chr8_2:12999729-12999748 Msa1235190:intron 40.0%
ATTGAGTGTGACAAGAGAGA+GGG + chr8_2:12999981-13000000 Msa1235190:intron 40.0%
AGAGAGAGGGAAAACAAGAT+AGG + chr8_2:12999994-13000013 Msa1235190:intron 40.0%
TGGACCACGTTCATTATAAG+TGG + chr8_2:13000482-13000501 Msa1235190:intron 40.0%
ATGATCTAGTTAATGGCCTG+CGG + chr8_2:13000909-13000928 Msa1235190:CDS 40.0%
CCGACATAAACAAGAATTGG+AGG - chr8_2:13000994-13001013 None:intergenic 40.0%
AAGCCATCTTTGAATTGGGC+AGG + chr8_2:12996174-12996193 Msa1235190:five_prime_UTR 45.0%
TGGTGACAAATCTCCCTCTT+TGG + chr8_2:12996397-12996416 Msa1235190:CDS 45.0%
CATGTGACACTATTAGGGGA+AGG - chr8_2:12996680-12996699 None:intergenic 45.0%
GGAGACAAGTTCTTAGTGAG+AGG + chr8_2:12996837-12996856 Msa1235190:CDS 45.0%
AACCTTCTTCAATCCGGGTA+TGG - chr8_2:12996882-12996901 None:intergenic 45.0%
GTGTACAATGGTACGTAGCA+AGG + chr8_2:12997110-12997129 Msa1235190:intron 45.0%
TACAATGGTACGTAGCAAGG+AGG + chr8_2:12997113-12997132 Msa1235190:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr8_2:12997923-12997942 Msa1235190:intron 45.0%
CAGTTCCCTTGTAATAGGGT+AGG - chr8_2:12998338-12998357 None:intergenic 45.0%
ACCCTATTACAAGGGAACTG+AGG + chr8_2:12998338-12998357 Msa1235190:intron 45.0%
GACCTCAGTTCCCTTGTAAT+AGG - chr8_2:12998343-12998362 None:intergenic 45.0%
ATTACAAGGGAACTGAGGTC+TGG + chr8_2:12998343-12998362 Msa1235190:intron 45.0%
ATCCCAAGCTTCCACAATAG+AGG + chr8_2:12999247-12999266 Msa1235190:CDS 45.0%
CTCCTCTATTGTGGAAGCTT+GGG - chr8_2:12999252-12999271 None:intergenic 45.0%
TCTCCTCTATTGTGGAAGCT+TGG - chr8_2:12999253-12999272 None:intergenic 45.0%
ATTCCAAGAGGGAACTACCT+AGG + chr8_2:12999321-12999340 Msa1235190:CDS 45.0%
TTCCAAGAGGGAACTACCTA+GGG + chr8_2:12999322-12999341 Msa1235190:CDS 45.0%
AACTACCTAGGGTTGAAGCA+AGG + chr8_2:12999333-12999352 Msa1235190:CDS 45.0%
ACTACCTAGGGTTGAAGCAA+GGG + chr8_2:12999334-12999353 Msa1235190:CDS 45.0%
TGAAGCAAGGGTCATAGACA+AGG + chr8_2:12999346-12999365 Msa1235190:CDS 45.0%
! AGTAGCAGTGTCTTGCCTTT+TGG + chr8_2:12999458-12999477 Msa1235190:CDS 45.0%
AATAATTACTCCCTCCGTCC+CGG + chr8_2:12999517-12999536 Msa1235190:intron 45.0%
GATTGAGTGTGACAAGAGAG+AGG + chr8_2:12999980-12999999 Msa1235190:intron 45.0%
! ATCGTAGGGGAGTTTTCAGT+AGG - chr8_2:13000796-13000815 None:intergenic 45.0%
! ATTCCATGAGATTTTGCCGC+AGG - chr8_2:13000928-13000947 None:intergenic 45.0%
AGGCAGATGAAGGTGAGATT+TGG + chr8_2:13001138-13001157 Msa1235190:three_prime_UTR 45.0%
!! TTTATGATGTGCTGGTTGGG+TGG + chr8_2:13001210-13001229 Msa1235190:three_prime_UTR 45.0%
!!! TATTTATTTTTTATTAAAGT+TGG - chr8_2:12998947-12998966 None:intergenic 5.0%
!!! GTAATATTAAAATAATTTTT+TGG + chr8_2:12999857-12999876 Msa1235190:intron 5.0%
!! AAAAAGAATTATTATTAAAT+TGG + chr8_2:13000260-13000279 Msa1235190:intron 5.0%
GTGCCTGCCCAATTCAAAGA+TGG - chr8_2:12996180-12996199 None:intergenic 50.0%
CTTCTTCAATCCGGGTATGG+TGG - chr8_2:12996879-12996898 None:intergenic 50.0%
CACCATACCCGGATTGAAGA+AGG + chr8_2:12996877-12996896 Msa1235190:CDS 50.0%
! GTTTGGCATGATGGCGAAGA+GGG - chr8_2:12998511-12998530 None:intergenic 50.0%
! AGTTTGGCATGATGGCGAAG+AGG - chr8_2:12998512-12998531 None:intergenic 50.0%
AACCCTAGGTAGTTCCCTCT+TGG - chr8_2:12999327-12999346 None:intergenic 50.0%
ATGACCCTTGCTTCAACCCT+AGG - chr8_2:12999341-12999360 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr8_2:12999534-12999553 None:intergenic 50.0%
GCATTGTCTGCCACCATACC+CGG + chr8_2:12996866-12996885 Msa1235190:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr8_2:12999530-12999549 None:intergenic 55.0%
TGGCCTGCGGCAAAATCTCA+TGG + chr8_2:13000922-13000941 Msa1235190:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG - chr8_2:12999531-12999550 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 12996067 13001286 12996067 ID=Msa1235190;Name=Msa1235190
chr8_2 mRNA 12996067 13001286 12996067 ID=Msa1235190-mRNA-1;Parent=Msa1235190;Name=Msa1235190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=171|1|1|1|0.66|0.5|4|310|342
chr8_2 exon 12996067 12996273 12996067 ID=Msa1235190-mRNA-1:exon:5047;Parent=Msa1235190-mRNA-1
chr8_2 exon 12996389 12996898 12996389 ID=Msa1235190-mRNA-1:exon:5048;Parent=Msa1235190-mRNA-1
chr8_2 exon 12999128 12999514 12999128 ID=Msa1235190-mRNA-1:exon:5049;Parent=Msa1235190-mRNA-1
chr8_2 exon 13000881 13001286 13000881 ID=Msa1235190-mRNA-1:exon:5050;Parent=Msa1235190-mRNA-1
chr8_2 five_prime_UTR 12996067 12996237 12996067 ID=Msa1235190-mRNA-1:five_prime_utr;Parent=Msa1235190-mRNA-1
chr8_2 CDS 12996238 12996273 12996238 ID=Msa1235190-mRNA-1:cds;Parent=Msa1235190-mRNA-1
chr8_2 CDS 12996389 12996898 12996389 ID=Msa1235190-mRNA-1:cds;Parent=Msa1235190-mRNA-1
chr8_2 CDS 12999128 12999514 12999128 ID=Msa1235190-mRNA-1:cds;Parent=Msa1235190-mRNA-1
chr8_2 CDS 13000881 13000976 13000881 ID=Msa1235190-mRNA-1:cds;Parent=Msa1235190-mRNA-1
chr8_2 three_prime_UTR 13000977 13001286 13000977 ID=Msa1235190-mRNA-1:three_prime_utr;Parent=Msa1235190-mRNA-1
Gene Sequence

>Msa1235190

ATGGAAAATTTATGGGAAAATTGGATTTCTTCTTTGGAAATGGTTGGTGACAAATCTCCCTCTTTGGATGAAGACAAGTTTCAACAAGAGAATATGCAACAATCATGTTTCTCTTTTGAGGGTGATAATTCTCAATCTTCAACCATACAATATTTTAACAATATTTTAGATAATGTTTGTGTCACCCCCACAATTCAAGAGAACATTCTCAAGAATAGCAATAGTTCCAACTCCCTCATTTCTCAAGAACATAATTGTGCTACTAATTCACAAAAATTAGCACCTTCTCAATACATTTTGTCTTTTGAAAACTCAAGTGTGAAACCTTCCCCTAATAGTGTCACATGTTCTTCTATTATGGTCCAAAAAACAACCTTGAACAACAATATTTTGAGTGAATTACCAAAGACAATTAAGAAAAGAACCAAGAATCTAAGAAGAAACTCTTCAGAGATACAAGATCACATTATGGCTGAGAGAAAAAGGAGACAAGTTCTTAGTGAGAGGTTCATAGCATTGTCTGCCACCATACCCGGATTGAAGAAGACTGATAAGGCCTACATACTTCAAGAAGCTATCAATTATGTGAAACAACTTCAAGAAAGGGTAAATGAGCTAGAGAATCATAACAAAAGGAAAAGAGATTCAGTAATATTCATCAAGAAATCCCAAGCTTCCACAATAGAGGAGAAAAGTACATCATGTGAAGAGAATTCTGATAATGATGACCATAGATATTATTCCAAGAGGGAACTACCTAGGGTTGAAGCAAGGGTCATAGACAAGGAAATTCTCATTGGAATCCATTGTGAGAAACAAAAGGATGTTCTGGTCAGATTAATGGCTTTGCTTCAAAATCTTCATCTATCTCTTGCTAGTAGCAGTGTCTTGCCTTTTGGAACATCCACTCTAAAAGTTACAATCATTGCTCAGATGGATGATGAATATTGCATGAGCGTGAATGATCTAGTTAATGGCCTGCGGCAAAATCTCATGGAATCACGTGACAATAATGATAATATTTCTTAG
Protein sequence

>Msa1235190

MENLWENWISSLEMVGDKSPSLDEDKFQQENMQQSCFSFEGDNSQSSTIQYFNNILDNVCVTPTIQENILKNSNSSNSLISQEHNCATNSQKLAPSQYILSFENSSVKPSPNSVTCSSIMVQKTTLNNNILSELPKTIKKRTKNLRRNSSEIQDHIMAERKRRQVLSERFIALSATIPGLKKTDKAYILQEAINYVKQLQERVNELENHNKRKRDSVIFIKKSQASTIEEKSTSCEENSDNDDHRYYSKRELPRVEARVIDKEILIGIHCEKQKDVLVRLMALLQNLHLSLASSSVLPFGTSTLKVTIIAQMDDEYCMSVNDLVNGLRQNLMESRDNNDNIS*