AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0301180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301180 MtrunA17_Chr2g0295801 76.941 438 4 2 1 341 712 1149 0.0 649
Msa0301180 MtrunA17_Chr8g0390311 27.556 225 155 4 118 338 1112 1332 1.62e-20 93.2
Msa0301180 MtrunA17_Chr1g0196911 26.891 238 162 7 106 338 1248 1478 4.74e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301180 AT3G06880.2 45.103 439 143 3 1 341 826 1264 1.56e-116 365
Msa0301180 AT3G06880.1 44.037 436 146 3 1 338 826 1261 3.24e-111 351
Msa0301180 AT3G06880.4 41.509 477 143 4 1 341 826 1302 2.99e-109 346
Msa0301180 AT3G06880.3 41.919 396 132 3 1 298 826 1221 6.86e-91 295
Msa0301180 AT3G06880.5 42.025 395 131 3 1 297 826 1220 2.31e-90 294

Find 86 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGTAAGGATTGAAATTT+TGG 0.093262 2_3:-56948318 None:intergenic
GACTGAGAAGCAAAATTAAA+AGG 0.238898 2_3:+56945856 Msa0301180:CDS
CAAGACATTCAAGATTTCTT+TGG 0.273832 2_3:-56947417 None:intergenic
GGAATTGGATGAAAGACTTT+TGG 0.312737 2_3:+56946007 Msa0301180:CDS
CTAATCTTTGTTGTAATACT+AGG 0.322044 2_3:-56948860 None:intergenic
CTCATCAGCAAGCAGCATTC+AGG 0.331709 2_3:+56948400 Msa0301180:CDS
TGCTTCCTCCAACTTCTTGT+AGG 0.336549 2_3:-56948121 None:intergenic
AATATAACACAACACACAAT+AGG 0.339573 2_3:+56948080 Msa0301180:CDS
GCATATGAATTAAATGCATT+TGG 0.350368 2_3:-56948939 None:intergenic
TCCAACACTTATGATACATT+TGG 0.362304 2_3:-56945805 None:intergenic
TAGGCTACAATTGAATTGAT+TGG 0.365098 2_3:-56948151 None:intergenic
TCAGTCCTCTCTCTAAAGTA+TGG 0.365570 2_3:-56945839 None:intergenic
CATTATCTCCTTTGTCAGTA+AGG 0.375083 2_3:-56948331 None:intergenic
TCTGCATCCTGGAGTGGAAT+TGG 0.385128 2_3:+56945992 Msa0301180:CDS
GATCATGGAAAGTTATATAT+TGG 0.387665 2_3:+56947954 Msa0301180:CDS
TACCAATGTCTGTGTGAGTA+TGG 0.391290 2_3:-56949030 None:intergenic
ACAACAAAGATTAGCCAGTA+TGG 0.396432 2_3:+56948869 Msa0301180:three_prime_UTR
TGATTGAATGTAGCACATTT+CGG 0.397994 2_3:+56949073 Msa0301180:three_prime_UTR
TTGGTAATAATTTGAGTAAG+TGG 0.410289 2_3:+56949047 Msa0301180:three_prime_UTR
ATATTCAGATGGATCAATTA+AGG 0.410367 2_3:+56946784 Msa0301180:CDS
GCATCTGAGATTATATTAAG+AGG 0.412127 2_3:+56945957 Msa0301180:CDS
TAATTCATGGAATAACATAT+TGG 0.414711 2_3:-56949335 None:intergenic
CAAGCCACGAGATGGCTATA+AGG 0.415768 2_3:-56945893 None:intergenic
ACTATAGAGCCAATCTCTAT+AGG 0.419557 2_3:-56948170 None:intergenic
CAATTGTAGCCTATAGAGAT+TGG 0.424376 2_3:+56948161 Msa0301180:CDS
GCAGAATTACTGAGGCTGTC+TGG 0.430531 2_3:-56945936 None:intergenic
ACATCAACATTTCAAATTGA+AGG 0.431916 2_3:-56949142 None:intergenic
GTATGAACTCGCTAAGCCTT+TGG 0.433065 2_3:-56948961 None:intergenic
TGCATGTATAATTATGCCTC+AGG 0.435364 2_3:+56946038 Msa0301180:CDS
AATGACTAAGCTTTCCATAC+TGG 0.440278 2_3:-56948883 None:intergenic
ACAGTCCCTTGTAGTATATG+AGG 0.447684 2_3:-56946751 None:intergenic
CACAACACACAATAGGGAAC+TGG 0.469494 2_3:+56948087 Msa0301180:CDS
ACTGAGAAGCAAAATTAAAA+GGG 0.471176 2_3:+56945857 Msa0301180:CDS
ATATAACACAACACACAATA+GGG 0.475647 2_3:+56948081 Msa0301180:CDS
CTTTCATCCAATTCCACTCC+AGG 0.475827 2_3:-56945999 None:intergenic
AGTGCAAGTAAGCATGTTGA+AGG 0.486423 2_3:+56948190 Msa0301180:CDS
ATTGAGCAATTTCTGCATCC+TGG 0.487251 2_3:+56945981 Msa0301180:CDS
GACAAGTAATAAGTGATGTA+AGG 0.489631 2_3:-56948983 None:intergenic
CTTATAGCCATCTCGTGGCT+TGG 0.494099 2_3:+56945894 Msa0301180:CDS
TCAAACCACCTACAAGAAGT+TGG 0.503470 2_3:+56948113 Msa0301180:CDS
AAGTGCATGGCAGTGGATCA+TGG 0.505739 2_3:+56947939 Msa0301180:CDS
TCCAAATGTATCATAAGTGT+TGG 0.505995 2_3:+56945804 Msa0301180:CDS
TTCCTCCAACTTCTTGTAGG+TGG 0.506735 2_3:-56948118 None:intergenic
TGTGCGCGCAAATGATGAAC+TGG 0.509995 2_3:-56947460 None:intergenic
GCATGGGAAGTGCATGGCAG+TGG 0.512378 2_3:+56947932 Msa0301180:CDS
TCTTTGTTGTAATACTAGGC+TGG 0.514010 2_3:-56948856 None:intergenic
TGTAATACTAGGCTGGCAAA+AGG 0.515096 2_3:-56948849 None:intergenic
TACTGAGAAGGGACTAATCA+AGG 0.523834 2_3:+56948664 Msa0301180:CDS
CTGCACAGACTCAAGCATAC+AGG 0.525550 2_3:+56947977 Msa0301180:CDS
GGAGATTATCAGCAGGGAGC+AGG 0.526014 2_3:+56948600 Msa0301180:CDS
TATAATTATGCCTCAGGGAA+AGG 0.526256 2_3:+56946044 Msa0301180:CDS
AGGAGATAATGTGGTAGCCA+TGG 0.528745 2_3:+56948343 Msa0301180:CDS
TCTTGAAGTAATAGTCATGA+AGG 0.536252 2_3:+56947435 Msa0301180:CDS
TTGCTGATGAGCTAGAGATT+AGG 0.547967 2_3:-56948388 None:intergenic
AGGATACAAGCATAGATGTA+TGG 0.550730 2_3:+56945769 Msa0301180:CDS
TAATGTGGTAGCCATGGAAG+TGG 0.552834 2_3:+56948349 Msa0301180:CDS
ATTGAAGTTCTTCTTACAGA+GGG 0.557990 2_3:-56948783 None:intergenic
ATTTCAATCCTTACTGACAA+AGG 0.559066 2_3:+56948323 Msa0301180:CDS
TGTTGAAGGAACAACATTCA+AGG 0.565707 2_3:+56948204 Msa0301180:CDS
GCATTTAATTCATATGCCAA+AGG 0.566467 2_3:+56948945 Msa0301180:three_prime_UTR
GTCTGTGTGAGTATGGTGTC+CGG 0.567392 2_3:-56949023 None:intergenic
CACCATACTCACACAGACAT+TGG 0.567857 2_3:+56949028 Msa0301180:three_prime_UTR
TTGCTCCCTCATATACTACA+AGG 0.567949 2_3:+56946745 Msa0301180:CDS
TTATTCAGTGGATATTCAGA+TGG 0.569900 2_3:+56946773 Msa0301180:CDS
CTCAAACAGATCTGGTTGAG+AGG 0.577396 2_3:+56948560 Msa0301180:intron
TATCGACAAGTGTCAGACAT+TGG 0.579174 2_3:+56949114 Msa0301180:three_prime_UTR
AAGTTGGGGAGATTATCAGC+AGG 0.579209 2_3:+56948593 Msa0301180:CDS
GAAGTCTTCTACCACTTCCA+TGG 0.580259 2_3:-56948360 None:intergenic
CAGTCCCTTGTAGTATATGA+GGG 0.581343 2_3:-56946750 None:intergenic
GCAATTTCTGCATCCTGGAG+TGG 0.582232 2_3:+56945986 Msa0301180:CDS
ATCTTCCATACTTTAGAGAG+AGG 0.583033 2_3:+56945834 Msa0301180:CDS
GTTCATCATTTGCGCGCACA+TGG 0.590944 2_3:+56947463 Msa0301180:CDS
TTGACATCCAAGCCACGAGA+TGG 0.615098 2_3:-56945901 None:intergenic
TACTGACAAAGGAGATAATG+TGG 0.621257 2_3:+56948334 Msa0301180:CDS
TACAAGGGACTGTTATTCAG+TGG 0.624611 2_3:+56946761 Msa0301180:CDS
ATTTGGTTTGTGTCTGACAA+TGG 0.627175 2_3:-56948922 None:intergenic
AATTGAAGTTCTTCTTACAG+AGG 0.627594 2_3:-56948784 None:intergenic
TCAAGTAGCAACGCAGACAC+CGG 0.633837 2_3:+56949004 Msa0301180:three_prime_UTR
AGGTAAGCATGGGAAGTGCA+TGG 0.635419 2_3:+56947926 Msa0301180:CDS
AACCACCTACAAGAAGTTGG+AGG 0.641047 2_3:+56948116 Msa0301180:CDS
GCATGTATAATTATGCCTCA+GGG 0.650931 2_3:+56946039 Msa0301180:CDS
TGCTCCCTCATATACTACAA+GGG 0.675914 2_3:+56946746 Msa0301180:CDS
AGTTGGGGAGATTATCAGCA+GGG 0.676228 2_3:+56948594 Msa0301180:CDS
TCTCAGATGCAGAATTACTG+AGG 0.682745 2_3:-56945944 None:intergenic
ACTGCCTTATAGCCATCTCG+TGG 0.705495 2_3:+56945889 Msa0301180:CDS
AAGGACAATACCTTTCCCTG+AGG 0.763391 2_3:-56946054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAATAACATTTTTTTTA+CGG - chr2_3:56949250-56949269 None:intergenic 10.0%
!!! AAAAAATGTTATTTTTCTTT+TGG + chr2_3:56949253-56949272 Msa0301180:three_prime_UTR 10.0%
!! CAATTATATTATGTAAACTT+AGG - chr2_3:56947046-56947065 None:intergenic 15.0%
!!! ATGATATGATACTTTATTTT+AGG + chr2_3:56948057-56948076 Msa0301180:intron 15.0%
!!! TTTTGGTTAATTTTTTCATA+GGG - chr2_3:56948504-56948523 None:intergenic 15.0%
!!! TGAAATAATAAAACCTGTTT+TGG + chr2_3:56946956-56946975 Msa0301180:intron 20.0%
!!! ACAAAACTATTGTTTTGAAA+AGG + chr2_3:56947149-56947168 Msa0301180:intron 20.0%
!!! AAGGTTAAAACTTTCTTTTA+TGG + chr2_3:56947305-56947324 Msa0301180:intron 20.0%
!! TATTATCTTAGAATTTGAGT+TGG + chr2_3:56947624-56947643 Msa0301180:intron 20.0%
!!! ATTATCTTAGAATTTGAGTT+GGG + chr2_3:56947625-56947644 Msa0301180:intron 20.0%
!!! GAAATAAGAGATATTTTCAA+AGG + chr2_3:56947906-56947925 Msa0301180:CDS 20.0%
!!! GTTTTGGTTAATTTTTTCAT+AGG - chr2_3:56948505-56948524 None:intergenic 20.0%
!! TTAGAGAAATAAATAACAAG+AGG - chr2_3:56948712-56948731 None:intergenic 20.0%
!!! TGTTATTTTTCTTTTGGAAA+AGG + chr2_3:56949259-56949278 Msa0301180:three_prime_UTR 20.0%
! ACTGAGAAGCAAAATTAAAA+GGG + chr2_3:56945857-56945876 Msa0301180:CDS 25.0%
! CCTCATAAAAAAAAATGACA+AGG - chr2_3:56946076-56946095 None:intergenic 25.0%
!!! CCTTGTCATTTTTTTTTATG+AGG + chr2_3:56946073-56946092 Msa0301180:intron 25.0%
! TTTGTTAAGTAACATAACTG+AGG - chr2_3:56946109-56946128 None:intergenic 25.0%
! TAAAGTTGCAATATACCTTA+AGG - chr2_3:56946584-56946603 None:intergenic 25.0%
! ATATTCAGATGGATCAATTA+AGG + chr2_3:56946784-56946803 Msa0301180:CDS 25.0%
! CAAAATAGAAAAATGTTGCT+GGG + chr2_3:56946890-56946909 Msa0301180:intron 25.0%
!!! TAATAAAACCTGTTTTGGTA+CGG + chr2_3:56946961-56946980 Msa0301180:intron 25.0%
! TACAATAACATGCACATAAT+AGG + chr2_3:56947381-56947400 Msa0301180:intron 25.0%
! TACTGAAAAACAAGGAATAA+AGG + chr2_3:56947504-56947523 Msa0301180:CDS 25.0%
! AAAAACAAGGAATAAAGGTA+AGG + chr2_3:56947509-56947528 Msa0301180:intron 25.0%
! TTACTTCATGTCATAAATCA+AGG - chr2_3:56947546-56947565 None:intergenic 25.0%
!! TTTTATTATCCAAGACATGA+AGG - chr2_3:56947817-56947836 None:intergenic 25.0%
! TGTCTTGGATAATAAAAACA+TGG + chr2_3:56947820-56947839 Msa0301180:intron 25.0%
! GTCTTGGATAATAAAAACAT+GGG + chr2_3:56947821-56947840 Msa0301180:intron 25.0%
!! ATATTTTCAAAGGTAAGCAT+GGG + chr2_3:56947916-56947935 Msa0301180:CDS 25.0%
! GATCATGGAAAGTTATATAT+TGG + chr2_3:56947954-56947973 Msa0301180:CDS 25.0%
! AATATAACACAACACACAAT+AGG + chr2_3:56948080-56948099 Msa0301180:CDS 25.0%
! ATATAACACAACACACAATA+GGG + chr2_3:56948081-56948100 Msa0301180:CDS 25.0%
!! TCAGTAAGGATTGAAATTTT+GGG - chr2_3:56948320-56948339 None:intergenic 25.0%
! GCGACATAAATAATAGTATT+AGG - chr2_3:56948438-56948457 None:intergenic 25.0%
!!! AACTTCTTTTTTTTTATCCG+CGG - chr2_3:56948472-56948491 None:intergenic 25.0%
! ACCACAAAAAATAATGTCAT+TGG - chr2_3:56948645-56948664 None:intergenic 25.0%
!! CTAATCTTTGTTGTAATACT+AGG - chr2_3:56948863-56948882 None:intergenic 25.0%
! GCATATGAATTAAATGCATT+TGG - chr2_3:56948942-56948961 None:intergenic 25.0%
!! TTGGTAATAATTTGAGTAAG+TGG + chr2_3:56949047-56949066 Msa0301180:three_prime_UTR 25.0%
! ACATCAACATTTCAAATTGA+AGG - chr2_3:56949145-56949164 None:intergenic 25.0%
TCCAAATGTATCATAAGTGT+TGG + chr2_3:56945804-56945823 Msa0301180:CDS 30.0%
TCCAACACTTATGATACATT+TGG - chr2_3:56945808-56945827 None:intergenic 30.0%
GACTGAGAAGCAAAATTAAA+AGG + chr2_3:56945856-56945875 Msa0301180:CDS 30.0%
! GCATCTGAGATTATATTAAG+AGG + chr2_3:56945957-56945976 Msa0301180:CDS 30.0%
TAAGTAACATAACTGAGGTA+GGG - chr2_3:56946104-56946123 None:intergenic 30.0%
TTAAGTAACATAACTGAGGT+AGG - chr2_3:56946105-56946124 None:intergenic 30.0%
CTTAACAAATGTCATGACAA+TGG + chr2_3:56946120-56946139 Msa0301180:intron 30.0%
TTGCTTTCCTACATGAAAAA+TGG - chr2_3:56946339-56946358 None:intergenic 30.0%
GCAAAAACTAATGCAATTCT+CGG + chr2_3:56946355-56946374 Msa0301180:intron 30.0%
ACTTTCAAACATAACTTGGA+TGG + chr2_3:56946403-56946422 Msa0301180:intron 30.0%
!!! GTTTTTCAAGTGTTACAAGT+TGG - chr2_3:56946495-56946514 None:intergenic 30.0%
TGTTCACACTTAAATCCTTA+AGG + chr2_3:56946566-56946585 Msa0301180:intron 30.0%
TTATTCAGTGGATATTCAGA+TGG + chr2_3:56946773-56946792 Msa0301180:CDS 30.0%
!!! TTTTGCTGACTTAGAGAAAA+TGG - chr2_3:56946875-56946894 None:intergenic 30.0%
GCAAAATAGAAAAATGTTGC+TGG + chr2_3:56946889-56946908 Msa0301180:intron 30.0%
TGACATGTGTTTAAACACTA+TGG - chr2_3:56947012-56947031 None:intergenic 30.0%
CAAGATTCGATCATAGAATT+TGG - chr2_3:56947070-56947089 None:intergenic 30.0%
! TATCTGTTTTCTTTTGAACC+AGG + chr2_3:56947114-56947133 Msa0301180:intron 30.0%
! TTTTGTTAGAACAGATATCC+TGG - chr2_3:56947135-56947154 None:intergenic 30.0%
!!! ACTATTGTTTTGAAAAGGTC+TGG + chr2_3:56947154-56947173 Msa0301180:intron 30.0%
!!! CTATTGTTTTGAAAAGGTCT+GGG + chr2_3:56947155-56947174 Msa0301180:intron 30.0%
!! AAGTTTTAACCTTACCCTTA+TGG - chr2_3:56947298-56947317 None:intergenic 30.0%
ACTCTTGCTAATAGAAATCT+TGG - chr2_3:56947344-56947363 None:intergenic 30.0%
CAAGACATTCAAGATTTCTT+TGG - chr2_3:56947420-56947439 None:intergenic 30.0%
TCTTGAAGTAATAGTCATGA+AGG + chr2_3:56947435-56947454 Msa0301180:CDS 30.0%
TTCGCAATTACTGAAAAACA+AGG + chr2_3:56947496-56947515 Msa0301180:CDS 30.0%
ACCTTCAAGGCAATTTAATA+GGG - chr2_3:56947661-56947680 None:intergenic 30.0%
TACCTTCAAGGCAATTTAAT+AGG - chr2_3:56947662-56947681 None:intergenic 30.0%
ATTAAATTGCCTTGAAGGTA+AGG + chr2_3:56947662-56947681 Msa0301180:intron 30.0%
TCTGAAAATGTGGTTATAAG+TGG - chr2_3:56947696-56947715 None:intergenic 30.0%
! GATATTTTCAAAGGTAAGCA+TGG + chr2_3:56947915-56947934 Msa0301180:CDS 30.0%
!! GTGTTGTTTGACATAGATTA+TGG + chr2_3:56948016-56948035 Msa0301180:intron 30.0%
TAGGCTACAATTGAATTGAT+TGG - chr2_3:56948154-56948173 None:intergenic 30.0%
! AACTTTGCTTTGTTCTTACA+TGG + chr2_3:56948257-56948276 Msa0301180:intron 30.0%
!! ACATGGATGGATTATGATAT+AGG + chr2_3:56948274-56948293 Msa0301180:intron 30.0%
!! GATGGATTATGATATAGGAA+TGG + chr2_3:56948279-56948298 Msa0301180:intron 30.0%
! GTCAGTAAGGATTGAAATTT+TGG - chr2_3:56948321-56948340 None:intergenic 30.0%
ATTTCAATCCTTACTGACAA+AGG + chr2_3:56948323-56948342 Msa0301180:CDS 30.0%
ATCAAATTCTCAAACAGATC+TGG + chr2_3:56948552-56948571 Msa0301180:intron 30.0%
!!! GCCAATGACATTATTTTTTG+TGG + chr2_3:56948641-56948660 Msa0301180:CDS 30.0%
!!! TATTTTTTGTGGTACTGAGA+AGG + chr2_3:56948652-56948671 Msa0301180:CDS 30.0%
!!! ATTTTTTGTGGTACTGAGAA+GGG + chr2_3:56948653-56948672 Msa0301180:CDS 30.0%
! ACATTTCCCAAATTTTCAAC+AGG + chr2_3:56948753-56948772 Msa0301180:intron 30.0%
! CATTTCCCAAATTTTCAACA+GGG + chr2_3:56948754-56948773 Msa0301180:intron 30.0%
ATTGAAGTTCTTCTTACAGA+GGG - chr2_3:56948786-56948805 None:intergenic 30.0%
AATTGAAGTTCTTCTTACAG+AGG - chr2_3:56948787-56948806 None:intergenic 30.0%
GCATTTAATTCATATGCCAA+AGG + chr2_3:56948945-56948964 Msa0301180:three_prime_UTR 30.0%
GACAAGTAATAAGTGATGTA+AGG - chr2_3:56948986-56949005 None:intergenic 30.0%
TGATTGAATGTAGCACATTT+CGG + chr2_3:56949073-56949092 Msa0301180:three_prime_UTR 30.0%
AGGATACAAGCATAGATGTA+TGG + chr2_3:56945769-56945788 Msa0301180:CDS 35.0%
! ATCTTCCATACTTTAGAGAG+AGG + chr2_3:56945834-56945853 Msa0301180:CDS 35.0%
! GGAATTGGATGAAAGACTTT+TGG + chr2_3:56946007-56946026 Msa0301180:CDS 35.0%
TGCATGTATAATTATGCCTC+AGG + chr2_3:56946038-56946057 Msa0301180:CDS 35.0%
GCATGTATAATTATGCCTCA+GGG + chr2_3:56946039-56946058 Msa0301180:CDS 35.0%
TATAATTATGCCTCAGGGAA+AGG + chr2_3:56946044-56946063 Msa0301180:CDS 35.0%
ACTCAACAAATTCTGCTCAT+AGG + chr2_3:56946160-56946179 Msa0301180:intron 35.0%
!!! AAGACAGCCATTTTTCATGT+AGG + chr2_3:56946329-56946348 Msa0301180:intron 35.0%
AAACTAATGCAATTCTCGGA+AGG + chr2_3:56946359-56946378 Msa0301180:intron 35.0%
GACGACTTTCAAACATAACT+TGG + chr2_3:56946399-56946418 Msa0301180:intron 35.0%
TTGCATCACCTTAATCATCA+TGG + chr2_3:56946651-56946670 Msa0301180:intron 35.0%
TCTTACCACCATGATGATTA+AGG - chr2_3:56946662-56946681 None:intergenic 35.0%
TGTTCATACACAAATCCTTG+AGG + chr2_3:56946697-56946716 Msa0301180:intron 35.0%
CACAGAAACTGACATTAGTT+AGG - chr2_3:56946920-56946939 None:intergenic 35.0%
CTAACTAATGTCAGTTTCTG+TGG + chr2_3:56946918-56946937 Msa0301180:intron 35.0%
! TTGAAAAGGTCTGGGATATT+AGG + chr2_3:56947163-56947182 Msa0301180:intron 35.0%
! TGAAAAGGTCTGGGATATTA+GGG + chr2_3:56947164-56947183 Msa0301180:intron 35.0%
!! CACTAGACAGTCTTTTAAGT+GGG + chr2_3:56947259-56947278 Msa0301180:intron 35.0%
GTCCACTGATAAAACCATAA+GGG + chr2_3:56947281-56947300 Msa0301180:intron 35.0%
!!! TACCCTTATGGTTTTATCAG+TGG - chr2_3:56947286-56947305 None:intergenic 35.0%
CTGATAAAACCATAAGGGTA+AGG + chr2_3:56947286-56947305 Msa0301180:intron 35.0%
TAACATGCACATAATAGGTG+TGG + chr2_3:56947386-56947405 Msa0301180:intron 35.0%
ACCCTATTAAATTGCCTTGA+AGG + chr2_3:56947657-56947676 Msa0301180:intron 35.0%
GAAAATGTGGTTATAAGTGG+TGG - chr2_3:56947693-56947712 None:intergenic 35.0%
ACATGAAGGTAGCAAAACTA+TGG - chr2_3:56947803-56947822 None:intergenic 35.0%
!!! TACAGGTTAGTGTTTTTTCC+TGG + chr2_3:56947994-56948013 Msa0301180:intron 35.0%
AATCTATGTCAAACAACACC+AGG - chr2_3:56948015-56948034 None:intergenic 35.0%
CAATTGTAGCCTATAGAGAT+TGG + chr2_3:56948161-56948180 Msa0301180:CDS 35.0%
ACTATAGAGCCAATCTCTAT+AGG - chr2_3:56948173-56948192 None:intergenic 35.0%
TGTTGAAGGAACAACATTCA+AGG + chr2_3:56948204-56948223 Msa0301180:CDS 35.0%
! TTGCTTTGTTCTTACATGGA+TGG + chr2_3:56948261-56948280 Msa0301180:intron 35.0%
CATTATCTCCTTTGTCAGTA+AGG - chr2_3:56948334-56948353 None:intergenic 35.0%
TACTGACAAAGGAGATAATG+TGG + chr2_3:56948334-56948353 Msa0301180:CDS 35.0%
!! CAGTTGATTTTGCGTTGTTT+TGG - chr2_3:56948521-56948540 None:intergenic 35.0%
!! AGAGGAGTACCAAAAAAGTT+GGG + chr2_3:56948578-56948597 Msa0301180:CDS 35.0%
!!! GATAATCTCCCCAACTTTTT+TGG - chr2_3:56948590-56948609 None:intergenic 35.0%
! TCTTTGTTGTAATACTAGGC+TGG - chr2_3:56948859-56948878 None:intergenic 35.0%
! ACAACAAAGATTAGCCAGTA+TGG + chr2_3:56948869-56948888 Msa0301180:three_prime_UTR 35.0%
AATGACTAAGCTTTCCATAC+TGG - chr2_3:56948886-56948905 None:intergenic 35.0%
!! ATTTGGTTTGTGTCTGACAA+TGG - chr2_3:56948925-56948944 None:intergenic 35.0%
!! TCAGTCCTCTCTCTAAAGTA+TGG - chr2_3:56945842-56945861 None:intergenic 40.0%
TCTCAGATGCAGAATTACTG+AGG - chr2_3:56945947-56945966 None:intergenic 40.0%
ATTGAGCAATTTCTGCATCC+TGG + chr2_3:56945981-56946000 Msa0301180:CDS 40.0%
TTCTGCTCATAGGTTCTGTT+TGG + chr2_3:56946170-56946189 Msa0301180:intron 40.0%
CTCATAGGTTCTGTTTGGAT+TGG + chr2_3:56946175-56946194 Msa0301180:intron 40.0%
AAACATAACTTGGATGGCTG+AGG + chr2_3:56946409-56946428 Msa0301180:intron 40.0%
CATCACCTTAATCATCATGG+TGG + chr2_3:56946654-56946673 Msa0301180:intron 40.0%
TTGCTCCCTCATATACTACA+AGG + chr2_3:56946745-56946764 Msa0301180:CDS 40.0%
TGCTCCCTCATATACTACAA+GGG + chr2_3:56946746-56946765 Msa0301180:CDS 40.0%
CAGTCCCTTGTAGTATATGA+GGG - chr2_3:56946753-56946772 None:intergenic 40.0%
ACAGTCCCTTGTAGTATATG+AGG - chr2_3:56946754-56946773 None:intergenic 40.0%
TACAAGGGACTGTTATTCAG+TGG + chr2_3:56946761-56946780 Msa0301180:CDS 40.0%
! GAAAAGGTCTGGGATATTAG+GGG + chr2_3:56947165-56947184 Msa0301180:intron 40.0%
! AAAAGGTCTGGGATATTAGG+GGG + chr2_3:56947166-56947185 Msa0301180:intron 40.0%
CTTAATGTCCCATACAAGAC+TGG - chr2_3:56947199-56947218 None:intergenic 40.0%
! CAGTCTTGTATGGGACATTA+AGG + chr2_3:56947197-56947216 Msa0301180:intron 40.0%
CCACTTAAAAGACTGTCTAG+TGG - chr2_3:56947261-56947280 None:intergenic 40.0%
! CCACTAGACAGTCTTTTAAG+TGG + chr2_3:56947258-56947277 Msa0301180:intron 40.0%
GGTCCACTGATAAAACCATA+AGG + chr2_3:56947280-56947299 Msa0301180:intron 40.0%
GATGTTCAGGTCTGAAAATG+TGG - chr2_3:56947706-56947725 None:intergenic 40.0%
TCGTTGAACCATCCATTATC+AGG - chr2_3:56947748-56947767 None:intergenic 40.0%
! GTTTTGCTACCTTCATGTCT+TGG + chr2_3:56947805-56947824 Msa0301180:intron 40.0%
TCAAACCACCTACAAGAAGT+TGG + chr2_3:56948113-56948132 Msa0301180:CDS 40.0%
AGTGCAAGTAAGCATGTTGA+AGG + chr2_3:56948190-56948209 Msa0301180:CDS 40.0%
TTGCTGATGAGCTAGAGATT+AGG - chr2_3:56948391-56948410 None:intergenic 40.0%
TGTCGCTAAATATAAGTCCG+CGG + chr2_3:56948452-56948471 Msa0301180:intron 40.0%
!! GAGAGGAGTACCAAAAAAGT+TGG + chr2_3:56948577-56948596 Msa0301180:CDS 40.0%
!! GAGGAGTACCAAAAAAGTTG+GGG + chr2_3:56948579-56948598 Msa0301180:CDS 40.0%
TACTGAGAAGGGACTAATCA+AGG + chr2_3:56948664-56948683 Msa0301180:CDS 40.0%
TAACAAGAGGTCAGATGAGT+TGG - chr2_3:56948699-56948718 None:intergenic 40.0%
TCCAGCCCTGTTGAAAATTT+GGG - chr2_3:56948762-56948781 None:intergenic 40.0%
ATCCAGCCCTGTTGAAAATT+TGG - chr2_3:56948763-56948782 None:intergenic 40.0%
TGTAATACTAGGCTGGCAAA+AGG - chr2_3:56948852-56948871 None:intergenic 40.0%
TACCAATGTCTGTGTGAGTA+TGG - chr2_3:56949033-56949052 None:intergenic 40.0%
TATCGACAAGTGTCAGACAT+TGG + chr2_3:56949114-56949133 Msa0301180:three_prime_UTR 40.0%
CTTTCATCCAATTCCACTCC+AGG - chr2_3:56946002-56946021 None:intergenic 45.0%
AAGGACAATACCTTTCCCTG+AGG - chr2_3:56946057-56946076 None:intergenic 45.0%
TAAGCACCTAAGAGACTGCT+TGG + chr2_3:56946222-56946241 Msa0301180:intron 45.0%
AAGCACCTAAGAGACTGCTT+GGG + chr2_3:56946223-56946242 Msa0301180:intron 45.0%
GCAATTCTCGGAAGGAGTAA+AGG + chr2_3:56946367-56946386 Msa0301180:intron 45.0%
GATGGCTGAGGAGTTACATA+GGG + chr2_3:56946421-56946440 Msa0301180:intron 45.0%
CATACACAAATCCTTGAGGC+AGG + chr2_3:56946701-56946720 Msa0301180:intron 45.0%
!!! AACCTGTTTTGGTACGGTTC+AGG + chr2_3:56946967-56946986 Msa0301180:intron 45.0%
!!! ACCTGTTTTGGTACGGTTCA+GGG + chr2_3:56946968-56946987 Msa0301180:intron 45.0%
GTGGATAGTCCTTACCTTCA+AGG - chr2_3:56947674-56947693 None:intergenic 45.0%
CACAACACACAATAGGGAAC+TGG + chr2_3:56948087-56948106 Msa0301180:CDS 45.0%
AACCACCTACAAGAAGTTGG+AGG + chr2_3:56948116-56948135 Msa0301180:CDS 45.0%
TTCCTCCAACTTCTTGTAGG+TGG - chr2_3:56948121-56948140 None:intergenic 45.0%
TGCTTCCTCCAACTTCTTGT+AGG - chr2_3:56948124-56948143 None:intergenic 45.0%
AGGAGATAATGTGGTAGCCA+TGG + chr2_3:56948343-56948362 Msa0301180:CDS 45.0%
TAATGTGGTAGCCATGGAAG+TGG + chr2_3:56948349-56948368 Msa0301180:CDS 45.0%
GAAGTCTTCTACCACTTCCA+TGG - chr2_3:56948363-56948382 None:intergenic 45.0%
CTCAAACAGATCTGGTTGAG+AGG + chr2_3:56948560-56948579 Msa0301180:intron 45.0%
AAGTTGGGGAGATTATCAGC+AGG + chr2_3:56948593-56948612 Msa0301180:CDS 45.0%
AGTTGGGGAGATTATCAGCA+GGG + chr2_3:56948594-56948613 Msa0301180:CDS 45.0%
! TCCCAAATTTTCAACAGGGC+TGG + chr2_3:56948758-56948777 Msa0301180:intron 45.0%
GTATGAACTCGCTAAGCCTT+TGG - chr2_3:56948964-56948983 None:intergenic 45.0%
CACCATACTCACACAGACAT+TGG + chr2_3:56949028-56949047 Msa0301180:three_prime_UTR 45.0%
ACTGCCTTATAGCCATCTCG+TGG + chr2_3:56945889-56945908 Msa0301180:CDS 50.0%
CAAGCCACGAGATGGCTATA+AGG - chr2_3:56945896-56945915 None:intergenic 50.0%
CTTATAGCCATCTCGTGGCT+TGG + chr2_3:56945894-56945913 Msa0301180:CDS 50.0%
TTGACATCCAAGCCACGAGA+TGG - chr2_3:56945904-56945923 None:intergenic 50.0%
GCAGAATTACTGAGGCTGTC+TGG - chr2_3:56945939-56945958 None:intergenic 50.0%
GCAATTTCTGCATCCTGGAG+TGG + chr2_3:56945986-56946005 Msa0301180:CDS 50.0%
TCTGCATCCTGGAGTGGAAT+TGG + chr2_3:56945992-56946011 Msa0301180:CDS 50.0%
GTTCTCCCAAGCAGTCTCTT+AGG - chr2_3:56946231-56946250 None:intergenic 50.0%
GGATGGCTGAGGAGTTACAT+AGG + chr2_3:56946420-56946439 Msa0301180:intron 50.0%
TAAAGTTGCGACCTGCCTCA+AGG - chr2_3:56946715-56946734 None:intergenic 50.0%
!!! CCTGTTTTGGTACGGTTCAG+GGG + chr2_3:56946969-56946988 Msa0301180:intron 50.0%
! GCACTCAGCCAGTCTTGTAT+GGG + chr2_3:56947188-56947207 Msa0301180:intron 50.0%
TGTGCGCGCAAATGATGAAC+TGG - chr2_3:56947463-56947482 None:intergenic 50.0%
GTTCATCATTTGCGCGCACA+TGG + chr2_3:56947463-56947482 Msa0301180:CDS 50.0%
AGGTCGCACTCTAGATGTTC+AGG - chr2_3:56947719-56947738 None:intergenic 50.0%
CATCCATTATCAGGCCACTC+AGG - chr2_3:56947739-56947758 None:intergenic 50.0%
!! CTGAGTGGCCTGATAATGGA+TGG + chr2_3:56947737-56947756 Msa0301180:intron 50.0%
! AGGTAAGCATGGGAAGTGCA+TGG + chr2_3:56947926-56947945 Msa0301180:CDS 50.0%
AAGTGCATGGCAGTGGATCA+TGG + chr2_3:56947939-56947958 Msa0301180:CDS 50.0%
CTGCACAGACTCAAGCATAC+AGG + chr2_3:56947977-56947996 Msa0301180:CDS 50.0%
CTCATCAGCAAGCAGCATTC+AGG + chr2_3:56948400-56948419 Msa0301180:CDS 50.0%
TCAAGTAGCAACGCAGACAC+CGG + chr2_3:56949004-56949023 Msa0301180:three_prime_UTR 50.0%
GTCTGTGTGAGTATGGTGTC+CGG - chr2_3:56949026-56949045 None:intergenic 50.0%
CCCCTGAACCGTACCAAAAC+AGG - chr2_3:56946972-56946991 None:intergenic 55.0%
! GGCACTCAGCCAGTCTTGTA+TGG + chr2_3:56947187-56947206 Msa0301180:intron 55.0%
! CATCTAGAGTGCGACCTGAG+TGG + chr2_3:56947722-56947741 Msa0301180:intron 55.0%
CGACCTGAGTGGCCTGATAA+TGG + chr2_3:56947733-56947752 Msa0301180:intron 55.0%
GGAGATTATCAGCAGGGAGC+AGG + chr2_3:56948600-56948619 Msa0301180:CDS 55.0%
! GCATGGGAAGTGCATGGCAG+TGG + chr2_3:56947932-56947951 Msa0301180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 56945758 56949348 56945758 ID=Msa0301180;Name=Msa0301180
chr2_3 mRNA 56945758 56949348 56945758 ID=Msa0301180-mRNA-1;Parent=Msa0301180;Name=Msa0301180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=7|0.71|0.87|1|0.85|1|8|556|341
chr2_3 exon 56945758 56946065 56945758 ID=Msa0301180-mRNA-1:exon:18311;Parent=Msa0301180-mRNA-1
chr2_3 exon 56946723 56946805 56946723 ID=Msa0301180-mRNA-1:exon:18312;Parent=Msa0301180-mRNA-1
chr2_3 exon 56947403 56947525 56947403 ID=Msa0301180-mRNA-1:exon:18313;Parent=Msa0301180-mRNA-1
chr2_3 exon 56947888 56947998 56947888 ID=Msa0301180-mRNA-1:exon:18314;Parent=Msa0301180-mRNA-1
chr2_3 exon 56948079 56948225 56948079 ID=Msa0301180-mRNA-1:exon:18315;Parent=Msa0301180-mRNA-1
chr2_3 exon 56948296 56948421 56948296 ID=Msa0301180-mRNA-1:exon:18316;Parent=Msa0301180-mRNA-1
chr2_3 exon 56948569 56948685 56948569 ID=Msa0301180-mRNA-1:exon:18317;Parent=Msa0301180-mRNA-1
chr2_3 exon 56948775 56949348 56948775 ID=Msa0301180-mRNA-1:exon:18318;Parent=Msa0301180-mRNA-1
chr2_3 five_prime_UTR 56945758 56945764 56945758 ID=Msa0301180-mRNA-1:five_prime_utr;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56945765 56946065 56945765 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56946723 56946805 56946723 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56947403 56947525 56947403 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56947888 56947998 56947888 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56948079 56948225 56948079 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56948296 56948421 56948296 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56948569 56948685 56948569 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 CDS 56948775 56948792 56948775 ID=Msa0301180-mRNA-1:cds;Parent=Msa0301180-mRNA-1
chr2_3 three_prime_UTR 56948793 56949348 56948793 ID=Msa0301180-mRNA-1:three_prime_utr;Parent=Msa0301180-mRNA-1
Gene Sequence

>Msa0301180

ATGCAGGATACAAGCATAGATGTATGGTGCAGCAAAATTTCCAAATGTATCATAAGTGTTGGAGATTCAATCTTCCATACTTTAGAGAGAGGACTGAGAAGCAAAATTAAAAGGGTTTCTAGAGACTGCCTTATAGCCATCTCGTGGCTTGGATGTCAAATATCAAAAAATCCAGACAGCCTCAGTAATTCTGCATCTGAGATTATATTAAGAGGAATTGAGCAATTTCTGCATCCTGGAGTGGAATTGGATGAAAGACTTTTGGCATGTATGTGCATGTATAATTATGCCTCAGGGAAAGGTCGCAACTTTAGCACATCAGTTTGCTCCCTCATATACTACAAGGGACTGTTATTCAGTGGATATTCAGATGGATCAATTAAGGTGTGGAAAATGAACCAAAGAAATCTTGAATGTCTTGAAGTAATAGTCATGAAGGAACCAGTTCATCATTTGCGCGCACATGGCGAGACAATTTTCGCAATTACTGAAAAACAAGGAATAAAGCTTGTTAACAAATCGAGAGAAATAAGAGATATTTTCAAAGGTAAGCATGGGAAGTGCATGGCAGTGGATCATGGAAAGTTATATATTGGCTGCACAGACTCAAGCATACAGGAATATAACACAACACACAATAGGGAACTGGAAATCAAACCACCTACAAGAAGTTGGAGGAAGCAAAGTAAACCAATCAATTCAATTGTAGCCTATAGAGATTGGCTCTATAGTGCAAGTAAGCATGTTGAAGGAACAACATTCAAGGAATGGAAAAGAAGTGCAAAACCCAAAATTTCAATCCTTACTGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATCTCTAGCTCATCAGCAAGCAGCATTCAGATCTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGATTATCAGCAGGGAGCAGGATAACAAGCATCTATGCTGCCAATGACATTATTTTTTGTGGTACTGAGAAGGGACTAATCAAGGGCTGGATCCCTCTGTAA

Protein sequence

>Msa0301180

MQDTSIDVWCSKISKCIISVGDSIFHTLERGLRSKIKRVSRDCLIAISWLGCQISKNPDSLSNSASEIILRGIEQFLHPGVELDERLLACMCMYNYASGKGRNFSTSVCSLIYYKGLLFSGYSDGSIKVWKMNQRNLECLEVIVMKEPVHHLRAHGETIFAITEKQGIKLVNKSREIRDIFKGKHGKCMAVDHGKLYIGCTDSSIQEYNTTHNRELEIKPPTRSWRKQSKPINSIVAYRDWLYSASKHVEGTTFKEWKRSAKPKISILTDKGDNVVAMEVVEDFLYLISSSSASSIQIWLRGVPKKLGRLSAGSRITSIYAANDIIFCGTEKGLIKGWIPL*