AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385900 MtrunA17_Chr3g0129351 96.096 333 13 0 1 333 1 333 0.0 660
Msa1385900 MtrunA17_Chr7g0263181 37.011 281 152 6 60 324 100 371 3.14e-51 174
Msa1385900 MtrunA17_Chr8g0375201 38.743 191 117 0 115 305 107 297 1.36e-41 147
Msa1385900 MtrunA17_Chr1g0182131 33.333 210 134 4 104 310 132 338 2.85e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385900 AT4G39470.1 54.513 277 120 2 62 333 66 341 1.20e-102 305
Msa1385900 AT3G18420.1 36.992 246 142 4 74 306 55 300 2.58e-42 149
Msa1385900 AT2G37400.1 39.896 193 115 1 123 314 129 321 7.38e-38 138
Msa1385900 AT3G53560.1 40.000 195 112 2 123 314 129 321 2.19e-37 137
Msa1385900 AT3G53560.2 39.320 206 119 3 112 314 167 369 4.24e-37 137
Msa1385900 AT5G02590.1 39.691 194 115 2 115 307 120 312 5.18e-37 135
Msa1385900 AT3G09490.1 35.814 215 130 3 92 303 84 293 1.65e-30 118

Find 90 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 tig0020778:+101946 Msa1385900:CDS
TGTTGATTCCGCTGAAATTT+TGG 0.194421 tig0020778:+101727 Msa1385900:CDS
AACAAGTGCATAGTGATAAA+TGG 0.214256 tig0020778:-101553 None:intergenic
TAAGGCTAAAGGATTGTATT+TGG 0.219222 tig0020778:+101937 Msa1385900:CDS
GAGCTTTCTCCTATGGTGTT+TGG 0.260274 tig0020778:-104592 None:intergenic
ATACAGTCTTCTAGATAAAA+AGG 0.263949 tig0020778:+103662 Msa1385900:CDS
AGCTTTCTCCTATGGTGTTT+GGG 0.278495 tig0020778:-104591 None:intergenic
AAGCAATCTGAATTGTGAAT+TGG 0.312107 tig0020778:+104668 Msa1385900:three_prime_UTR
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 tig0020778:-101584 None:intergenic
AGAAGGGAATTGGGGAGATA+TGG 0.336995 tig0020778:-101461 None:intergenic
TGGTTGTGTATGGGAAAATT+AGG 0.344777 tig0020778:+101798 Msa1385900:CDS
GTGTGCTTTGCAGGGTGATT+TGG 0.355123 tig0020778:+103370 Msa1385900:intron
CCCTTCTGTGGAAACTCTTC+AGG 0.358106 tig0020778:-103726 None:intergenic
AGCCTCCACTCAACCTCATT+TGG 0.359412 tig0020778:-101875 None:intergenic
TGGAGGGTGTTAATGGAGTA+AGG 0.398543 tig0020778:-101577 None:intergenic
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 tig0020778:-101471 None:intergenic
CGTGGCAAAAGAAGGGAATT+GGG 0.418032 tig0020778:-101470 None:intergenic
AGGAAAGTGCACAGATCAAT+TGG 0.421291 tig0020778:-104522 None:intergenic
AATTCCTTCTGAAACTGTAC+TGG 0.436247 tig0020778:-103789 None:intergenic
GAATTGGGATAGATATGTTA+TGG 0.437245 tig0020778:+104684 Msa1385900:three_prime_UTR
AGCAATCTGAATTGTGAATT+GGG 0.443446 tig0020778:+104669 Msa1385900:three_prime_UTR
TGATGACCAGATTGGTTACC+AGG 0.455806 tig0020778:-104629 None:intergenic
TATTTACTTGATGACCAGAT+TGG 0.467712 tig0020778:-104637 None:intergenic
ACAAGTGCATAGTGATAAAT+GGG 0.468344 tig0020778:-101552 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 tig0020778:+101788 Msa1385900:CDS
TTGCAGGGTGATTTGGAGGA+GGG 0.472903 tig0020778:+103377 Msa1385900:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 tig0020778:+103208 Msa1385900:CDS
CCAAGCTGAGCTTTCTCCTA+TGG 0.478295 tig0020778:-104599 None:intergenic
TACGAATTCGTGGCAAAAGA+AGG 0.481369 tig0020778:-101478 None:intergenic
TTTGCAGGGTGATTTGGAGG+AGG 0.482427 tig0020778:+103376 Msa1385900:intron
GGTTGAAGTGAAATTGATAA+GGG 0.483895 tig0020778:-101512 None:intergenic
AGTGAACCTGGTAACCAATC+TGG 0.485601 tig0020778:+104623 Msa1385900:three_prime_UTR
TGCACAAATGCGTGTTGTAC+AGG 0.487235 tig0020778:+103239 Msa1385900:CDS
TGCTTTGCAGGGTGATTTGG+AGG 0.487354 tig0020778:+103373 Msa1385900:intron
AAAAGAGTGTAAAATCAATT+GGG 0.495076 tig0020778:-104713 None:intergenic
GATATCACCTTAGCAGCAAA+AGG 0.497307 tig0020778:+103759 Msa1385900:CDS
TTCAGCATTTCAAATACAGC+AGG 0.497693 tig0020778:-103150 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 tig0020778:+101919 Msa1385900:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 tig0020778:+101789 Msa1385900:CDS
GATCCGCTGATGCGAGTCAA+GGG 0.502120 tig0020778:+104486 Msa1385900:three_prime_UTR
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 tig0020778:+101837 Msa1385900:CDS
TGGTTGAAGTGAAATTGATA+AGG 0.510289 tig0020778:-101513 None:intergenic
AATTGGGATAGATATGTTAT+GGG 0.523293 tig0020778:+104685 Msa1385900:three_prime_UTR
GCTCAGCTTGGTAGTGAACC+TGG 0.526391 tig0020778:+104611 Msa1385900:three_prime_UTR
GGATCCGCTGATGCGAGTCA+AGG 0.534583 tig0020778:+104485 Msa1385900:three_prime_UTR
AAACTCACCTGGCAAAGATA+AGG 0.536373 tig0020778:-103449 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 tig0020778:+101926 Msa1385900:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 tig0020778:+101905 Msa1385900:CDS
AAACACAGTTGTTGTCAAAG+AGG 0.536808 tig0020778:+104558 Msa1385900:three_prime_UTR
GCCTGAAGAGTTTCCACAGA+AGG 0.536929 tig0020778:+103725 Msa1385900:CDS
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 tig0020778:+101778 Msa1385900:CDS
GGATAGATATGTTATGGGAT+AGG 0.544147 tig0020778:+104690 Msa1385900:three_prime_UTR
TATTAATGAAAACAAAGTTA+CGG 0.545367 tig0020778:+103191 Msa1385900:CDS
GGTACTGAAACTGCAAAAGC+GGG 0.549723 tig0020778:-101701 None:intergenic
TAGTCTTTCCCAAACACCAT+AGG 0.557118 tig0020778:+104583 Msa1385900:three_prime_UTR
CCTGAAGAGTTTCCACAGAA+GGG 0.557973 tig0020778:+103726 Msa1385900:CDS
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 tig0020778:-101611 None:intergenic
ATTCCTTCTGAAACTGTACT+GGG 0.561008 tig0020778:-103788 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 tig0020778:+101904 Msa1385900:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 tig0020778:+101862 Msa1385900:CDS
TCATCAAGAAATCCCTTCTG+TGG 0.572197 tig0020778:-103738 None:intergenic
TTGTTGCAGATACGAATTCG+TGG 0.574634 tig0020778:-101488 None:intergenic
TGAAGAGCTCTAACAAGAAG+AGG 0.582607 tig0020778:-101977 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 tig0020778:+101870 Msa1385900:CDS
CTTCTCCTCCAAAATTTCAG+CGG 0.586302 tig0020778:-101735 None:intergenic
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 tig0020778:-101477 None:intergenic
AACCCCTTGACTCGCATCAG+CGG 0.589559 tig0020778:-104489 None:intergenic
CCATAGGAGAAAGCTCAGCT+TGG 0.594126 tig0020778:+104599 Msa1385900:three_prime_UTR
GGAGGGTGTTAATGGAGTAA+GGG 0.597017 tig0020778:-101576 None:intergenic
AGGTACTGAAACTGCAAAAG+CGG 0.602398 tig0020778:-101702 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 tig0020778:+101850 Msa1385900:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 tig0020778:-101597 None:intergenic
ATCCCCAGTACAGTTTCAGA+AGG 0.615032 tig0020778:+103785 Msa1385900:CDS
GAAGGATTCAAGAAATGTTG+AGG 0.622010 tig0020778:+101766 Msa1385900:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 tig0020778:+101804 Msa1385900:CDS
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 tig0020778:-101593 None:intergenic
ATCCGCTGATGCGAGTCAAG+GGG 0.635859 tig0020778:+104487 Msa1385900:three_prime_UTR
ATTTCAGCGGAATCAACAGA+AGG 0.638207 tig0020778:-101722 None:intergenic
GTGTATGGGAAAATTAGGAG+AGG 0.651978 tig0020778:+101803 Msa1385900:CDS
AGATAAGGCCTAAAATCTCG+AGG 0.652081 tig0020778:-103434 None:intergenic
GTGGCAAAAGAAGGGAATTG+GGG 0.656867 tig0020778:-101469 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 tig0020778:+103155 Msa1385900:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 tig0020778:-101594 None:intergenic
ATAGTGATAAATGGGTAGCA+CGG 0.676425 tig0020778:-101544 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 tig0020778:+101873 Msa1385900:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 tig0020778:+103194 Msa1385900:CDS
GAGATATGGTTTGAACTCTG+AGG 0.695791 tig0020778:-101447 None:intergenic
CTCTGAGGAGATGAAGAGAG+TGG 0.713127 tig0020778:-101432 None:intergenic
TTCCTTCTGAAACTGTACTG+GGG 0.733749 tig0020778:-103787 None:intergenic
CATTGTGTTATGAGACAATG+GGG 0.737873 tig0020778:+101906 Msa1385900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGATTAGAAATT+TGG + tig0020778:102123-102142 Msa1385900:intron 15.0%
!!! TAATACAATTACTATTTTGA+CGG - tig0020778:102997-103016 None:intergenic 15.0%
!! TATTAATGAAAACAAAGTTA+CGG + tig0020778:103191-103210 Msa1385900:CDS 15.0%
!!! TTATTTTCAAAACAATTTCT+TGG - tig0020778:104244-104263 None:intergenic 15.0%
!! AATAATTGTAGAAAAAAACT+CGG + tig0020778:104463-104482 Msa1385900:intron 15.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG + tig0020778:101644-101663 Msa1385900:CDS 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG + tig0020778:101645-101664 Msa1385900:CDS 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG + tig0020778:102019-102038 Msa1385900:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG + tig0020778:102073-102092 Msa1385900:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG + tig0020778:102096-102115 Msa1385900:intron 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG - tig0020778:102579-102598 None:intergenic 20.0%
!! AAATAAAGAGTTAAGAACTT+AGG - tig0020778:102580-102599 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG - tig0020778:102684-102703 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG + tig0020778:102753-102772 Msa1385900:intron 20.0%
!!! TAATATAGTTCTGTAAGATA+TGG + tig0020778:103564-103583 Msa1385900:intron 20.0%
!! CAATACAATAATTTCATGAA+TGG - tig0020778:103610-103629 None:intergenic 20.0%
!!! ATTTTTACCTTTCCTATTTT+TGG - tig0020778:103833-103852 None:intergenic 20.0%
!! AATAGGAAAGGTAAAAATAT+AGG + tig0020778:103835-103854 Msa1385900:intron 20.0%
!! AATAAAGAACTACTTATTGT+AGG + tig0020778:104259-104278 Msa1385900:intron 20.0%
!! ATAATTGTAGAAAAAAACTC+GGG + tig0020778:104464-104483 Msa1385900:intron 20.0%
!!! AAAAGAGTGTAAAATCAATT+GGG - tig0020778:104716-104735 None:intergenic 20.0%
!!! AAAAAGAGTGTAAAATCAAT+TGG - tig0020778:104717-104736 None:intergenic 20.0%
!! TTTTCGTCATTCATTCAAAA+TGG + tig0020778:101394-101413 Msa1385900:exon 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG - tig0020778:101630-101649 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG + tig0020778:101946-101965 Msa1385900:CDS 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG + tig0020778:101954-101973 Msa1385900:CDS 25.0%
! TTTGATGGAATTATGAATGT+TGG + tig0020778:102034-102053 Msa1385900:intron 25.0%
!!! ACATTGATAATTGTTGACTT+AGG + tig0020778:102159-102178 Msa1385900:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG + tig0020778:102160-102179 Msa1385900:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG + tig0020778:102215-102234 Msa1385900:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG + tig0020778:102216-102235 Msa1385900:intron 25.0%
!!! TGTTTTTTCATAAGTTATCG+TGG - tig0020778:102302-102321 None:intergenic 25.0%
! ATGCAATCATATTTGCATAA+AGG - tig0020778:102528-102547 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG - tig0020778:102742-102761 None:intergenic 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG - tig0020778:102796-102815 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG + tig0020778:102795-102814 Msa1385900:intron 25.0%
! AATCTGAATCCAAAGTAAAA+TGG - tig0020778:102893-102912 None:intergenic 25.0%
!!! GTCTTTTTGGAGTAATTATT+TGG + tig0020778:103333-103352 Msa1385900:intron 25.0%
! AGAACAAAAATTAAAGTCAG+AGG - tig0020778:103504-103523 None:intergenic 25.0%
! ATGTTAAAAGAATATGTTGC+AGG + tig0020778:103632-103651 Msa1385900:intron 25.0%
! TGTTAAAAGAATATGTTGCA+GGG + tig0020778:103633-103652 Msa1385900:intron 25.0%
! ATACAGTCTTCTAGATAAAA+AGG + tig0020778:103662-103681 Msa1385900:CDS 25.0%
!! TCAATTTTCTGACCAAAAAT+AGG + tig0020778:103818-103837 Msa1385900:CDS 25.0%
!!! TGTGTTTCACATTTTTAAGT+AGG + tig0020778:104094-104113 Msa1385900:intron 25.0%
! AGGATTAGAAAGAATAAAAG+AGG + tig0020778:104279-104298 Msa1385900:intron 25.0%
! GGATTAGAAAGAATAAAAGA+GGG + tig0020778:104280-104299 Msa1385900:intron 25.0%
! AATTGGGATAGATATGTTAT+GGG + tig0020778:104685-104704 Msa1385900:three_prime_UTR 25.0%
!! AGTAGATTAAAAAGCATATG+CGG - tig0020778:104742-104761 None:intergenic 25.0%
GGTTGAAGTGAAATTGATAA+GGG - tig0020778:101515-101534 None:intergenic 30.0%
TGGTTGAAGTGAAATTGATA+AGG - tig0020778:101516-101535 None:intergenic 30.0%
ACAAGTGCATAGTGATAAAT+GGG - tig0020778:101555-101574 None:intergenic 30.0%
AACAAGTGCATAGTGATAAA+TGG - tig0020778:101556-101575 None:intergenic 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG - tig0020778:101614-101633 None:intergenic 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG + tig0020778:101742-101761 Msa1385900:CDS 30.0%
TAAGGCTAAAGGATTGTATT+TGG + tig0020778:101937-101956 Msa1385900:CDS 30.0%
AATATGATTGCATGTTGACA+TGG + tig0020778:102535-102554 Msa1385900:intron 30.0%
TAAAACCCATGTATGAATTC+TGG + tig0020778:102626-102645 Msa1385900:intron 30.0%
AACATCCAGAATTCATACAT+GGG - tig0020778:102634-102653 None:intergenic 30.0%
TTGAGCCTTAGTATGTATTT+CGG + tig0020778:102709-102728 Msa1385900:intron 30.0%
TACTTTGGATTCAGATTTGA+AGG + tig0020778:102896-102915 Msa1385900:intron 30.0%
! GGTAAATTGATTTCATGACA+TGG - tig0020778:103025-103044 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG + tig0020778:103025-103044 Msa1385900:intron 30.0%
! TGTATTTGAAATGCTGAACA+AGG + tig0020778:103155-103174 Msa1385900:CDS 30.0%
TAATGAAAACAAAGTTACGG+AGG + tig0020778:103194-103213 Msa1385900:CDS 30.0%
! AACCATGAACAATGTCTTTT+TGG + tig0020778:103320-103339 Msa1385900:intron 30.0%
! ATCAAAATCCTCGAGATTTT+AGG + tig0020778:103426-103445 Msa1385900:CDS 30.0%
TTTCTGACCAAAAATAGGAA+AGG + tig0020778:103823-103842 Msa1385900:exon 30.0%
TAAAGTAAGATGTAGACAAG+AGG + tig0020778:103958-103977 Msa1385900:intron 30.0%
AAAGTAAGATGTAGACAAGA+GGG + tig0020778:103959-103978 Msa1385900:intron 30.0%
TCATAGCATTTCTCAATCAA+CGG - tig0020778:104161-104180 None:intergenic 30.0%
AGAAATGCTATGAGAAATGT+TGG + tig0020778:104168-104187 Msa1385900:intron 30.0%
TCAATGACTCTATTGTAGAA+GGG - tig0020778:104327-104346 None:intergenic 30.0%
ATCAATGACTCTATTGTAGA+AGG - tig0020778:104328-104347 None:intergenic 30.0%
! AGGACACAATTAATTTTGAG+GGG - tig0020778:104410-104429 None:intergenic 30.0%
! GAGGACACAATTAATTTTGA+GGG - tig0020778:104411-104430 None:intergenic 30.0%
! TGAGGACACAATTAATTTTG+AGG - tig0020778:104412-104431 None:intergenic 30.0%
CAAAATTAATTGTGTCCTCA+AGG + tig0020778:104412-104431 Msa1385900:intron 30.0%
TTTAATAGATTGCAACCTTG+AGG - tig0020778:104430-104449 None:intergenic 30.0%
!!! AACAACTGTGTTTTGATAAG+TGG - tig0020778:104551-104570 None:intergenic 30.0%
! TATTTACTTGATGACCAGAT+TGG - tig0020778:104640-104659 None:intergenic 30.0%
AAGCAATCTGAATTGTGAAT+TGG + tig0020778:104668-104687 Msa1385900:three_prime_UTR 30.0%
AGCAATCTGAATTGTGAATT+GGG + tig0020778:104669-104688 Msa1385900:three_prime_UTR 30.0%
GAATTGGGATAGATATGTTA+TGG + tig0020778:104684-104703 Msa1385900:three_prime_UTR 30.0%
ATAGTGATAAATGGGTAGCA+CGG - tig0020778:101547-101566 None:intergenic 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG - tig0020778:101587-101606 None:intergenic 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG - tig0020778:101600-101619 None:intergenic 35.0%
!!! TGTTGATTCCGCTGAAATTT+TGG + tig0020778:101727-101746 Msa1385900:CDS 35.0%
GAAGGATTCAAGAAATGTTG+AGG + tig0020778:101766-101785 Msa1385900:CDS 35.0%
AAATGTTGAGGCTCTTAAAG+TGG + tig0020778:101778-101797 Msa1385900:CDS 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG + tig0020778:101789-101808 Msa1385900:CDS 35.0%
TGGTTGTGTATGGGAAAATT+AGG + tig0020778:101798-101817 Msa1385900:CDS 35.0%
TGTATGGGAAAATTAGGAGA+GGG + tig0020778:101804-101823 Msa1385900:CDS 35.0%
TGCATTGTGTTATGAGACAA+TGG + tig0020778:101904-101923 Msa1385900:CDS 35.0%
GCATTGTGTTATGAGACAAT+GGG + tig0020778:101905-101924 Msa1385900:CDS 35.0%
CATTGTGTTATGAGACAATG+GGG + tig0020778:101906-101925 Msa1385900:CDS 35.0%
!! TTGTTGACTTAGGGTTTGTT+TGG + tig0020778:102169-102188 Msa1385900:intron 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG + tig0020778:102426-102445 Msa1385900:intron 35.0%
! GATTGGTAATCATGGCTATT+AGG + tig0020778:102443-102462 Msa1385900:intron 35.0%
CAACATCCAGAATTCATACA+TGG - tig0020778:102635-102654 None:intergenic 35.0%
TGAGCCTTAGTATGTATTTC+GGG + tig0020778:102710-102729 Msa1385900:intron 35.0%
TCTTCCCGAAATACATACTA+AGG - tig0020778:102717-102736 None:intergenic 35.0%
TTAGTATGTATTTCGGGAAG+AGG + tig0020778:102716-102735 Msa1385900:intron 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG + tig0020778:102823-102842 Msa1385900:intron 35.0%
CTGAATCCAAAGTAAAATGG+CGG - tig0020778:102890-102909 None:intergenic 35.0%
TTTGGATTCAGATTTGAAGG+TGG + tig0020778:102899-102918 Msa1385900:intron 35.0%
TTTGCTAGATGCTTCTTTGA+CGG + tig0020778:102922-102941 Msa1385900:intron 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG - tig0020778:102987-103006 None:intergenic 35.0%
AACAAACAAATTGAGTGTCC+TGG - tig0020778:103046-103065 None:intergenic 35.0%
! AGTGATACTCTCTTTTCTAC+AGG + tig0020778:103092-103111 Msa1385900:intron 35.0%
! GTGATACTCTCTTTTCTACA+GGG + tig0020778:103093-103112 Msa1385900:intron 35.0%
GTGATGCACAAAAACAATGA+GGG + tig0020778:103126-103145 Msa1385900:CDS 35.0%
TTCAGCATTTCAAATACAGC+AGG - tig0020778:103153-103172 None:intergenic 35.0%
TTACGGAGGAGAGAAATATA+AGG + tig0020778:103208-103227 Msa1385900:CDS 35.0%
AACTCGTAGTAGATAAGCAA+AGG - tig0020778:103293-103312 None:intergenic 35.0%
CTCCAAAAAGACATTGTTCA+TGG - tig0020778:103325-103344 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG + tig0020778:103361-103380 Msa1385900:intron 35.0%
TAACATATGTGTGCTTTGCA+GGG + tig0020778:103362-103381 Msa1385900:intron 35.0%
CAGTCTTCTAGATAAAAAGG+AGG + tig0020778:103665-103684 Msa1385900:CDS 35.0%
!! ATTCCTTCTGAAACTGTACT+GGG - tig0020778:103791-103810 None:intergenic 35.0%
!! AATTCCTTCTGAAACTGTAC+TGG - tig0020778:103792-103811 None:intergenic 35.0%
TTCCCTTTATTCTAATGTCC+TGG + tig0020778:104375-104394 Msa1385900:intron 35.0%
CACCAGGACATTAGAATAAA+GGG - tig0020778:104380-104399 None:intergenic 35.0%
TCACCAGGACATTAGAATAA+AGG - tig0020778:104381-104400 None:intergenic 35.0%
AAACACAGTTGTTGTCAAAG+AGG + tig0020778:104558-104577 Msa1385900:three_prime_UTR 35.0%
GGATAGATATGTTATGGGAT+AGG + tig0020778:104690-104709 Msa1385900:three_prime_UTR 35.0%
GAGATATGGTTTGAACTCTG+AGG - tig0020778:101450-101469 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG - tig0020778:101480-101499 None:intergenic 40.0%
TACGAATTCGTGGCAAAAGA+AGG - tig0020778:101481-101500 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG - tig0020778:101491-101510 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG - tig0020778:101596-101615 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG - tig0020778:101597-101616 None:intergenic 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG - tig0020778:101705-101724 None:intergenic 40.0%
ATTTCAGCGGAATCAACAGA+AGG - tig0020778:101725-101744 None:intergenic 40.0%
! TGATTCCGCTGAAATTTTGG+AGG + tig0020778:101730-101749 Msa1385900:CDS 40.0%
CTTCTCCTCCAAAATTTCAG+CGG - tig0020778:101738-101757 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG + tig0020778:101788-101807 Msa1385900:CDS 40.0%
GTGTATGGGAAAATTAGGAG+AGG + tig0020778:101803-101822 Msa1385900:CDS 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG + tig0020778:101837-101856 Msa1385900:CDS 40.0%
! TGTGAAGAGGTTGATTGATG+AGG + tig0020778:101850-101869 Msa1385900:CDS 40.0%
GATTGATGAGGAACCAAATG+AGG + tig0020778:101862-101881 Msa1385900:CDS 40.0%
! GACAATGGGGTATTTGAGTA+AGG + tig0020778:101919-101938 Msa1385900:CDS 40.0%
GGGTATTTGAGTAAGGCTAA+AGG + tig0020778:101926-101945 Msa1385900:CDS 40.0%
! TGAAGAGCTCTAACAAGAAG+AGG - tig0020778:101980-101999 None:intergenic 40.0%
AAGTTATCGTGGAGAGCTTA+TGG - tig0020778:102291-102310 None:intergenic 40.0%
! GTGTTGCTGATTGGTAATCA+TGG + tig0020778:102435-102454 Msa1385900:intron 40.0%
TATGACGCTTGTCAAAACAC+CGG - tig0020778:102860-102879 None:intergenic 40.0%
!! TGAACACCGCCATTTTACTT+TGG + tig0020778:102881-102900 Msa1385900:intron 40.0%
! ACTCTCTTTTCTACAGGGTT+TGG + tig0020778:103098-103117 Msa1385900:intron 40.0%
! TTTTCTACAGGGTTTGGCTA+TGG + tig0020778:103104-103123 Msa1385900:intron 40.0%
GGTGATGCACAAAAACAATG+AGG + tig0020778:103125-103144 Msa1385900:CDS 40.0%
AGATAAGGCCTAAAATCTCG+AGG - tig0020778:103437-103456 None:intergenic 40.0%
!! TTTTAGGCCTTATCTTTGCC+AGG + tig0020778:103442-103461 Msa1385900:CDS 40.0%
AAACTCACCTGGCAAAGATA+AGG - tig0020778:103452-103471 None:intergenic 40.0%
GATTTGCATACAAACTCACC+TGG - tig0020778:103463-103482 None:intergenic 40.0%
TCATCAAGAAATCCCTTCTG+TGG - tig0020778:103741-103760 None:intergenic 40.0%
GATATCACCTTAGCAGCAAA+AGG + tig0020778:103759-103778 Msa1385900:CDS 40.0%
!! TTCCTTCTGAAACTGTACTG+GGG - tig0020778:103790-103809 None:intergenic 40.0%
AGCACATCACACTCTTGTAA+AGG + tig0020778:103906-103925 Msa1385900:intron 40.0%
ACTAACAGCACACTCTTGTT+AGG + tig0020778:104216-104235 Msa1385900:intron 40.0%
TGTAGAAGGGAAACCCATAA+AGG - tig0020778:104314-104333 None:intergenic 40.0%
! AGGAAAGTGCACAGATCAAT+TGG - tig0020778:104525-104544 None:intergenic 40.0%
TAGTCTTTCCCAAACACCAT+AGG + tig0020778:104583-104602 Msa1385900:three_prime_UTR 40.0%
AGCTTTCTCCTATGGTGTTT+GGG - tig0020778:104594-104613 None:intergenic 40.0%
AGAAGGGAATTGGGGAGATA+TGG - tig0020778:101464-101483 None:intergenic 45.0%
GTGGCAAAAGAAGGGAATTG+GGG - tig0020778:101472-101491 None:intergenic 45.0%
CGTGGCAAAAGAAGGGAATT+GGG - tig0020778:101473-101492 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG - tig0020778:101474-101493 None:intergenic 45.0%
! TGGGTAGCACGGAATTTTGA+TGG - tig0020778:101536-101555 None:intergenic 45.0%
!! GGAGGGTGTTAATGGAGTAA+GGG - tig0020778:101579-101598 None:intergenic 45.0%
!! TGGAGGGTGTTAATGGAGTA+AGG - tig0020778:101580-101599 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG - tig0020778:101704-101723 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG + tig0020778:101748-101767 Msa1385900:CDS 45.0%
AGGAACCAAATGAGGTTGAG+TGG + tig0020778:101870-101889 Msa1385900:CDS 45.0%
AACCAAATGAGGTTGAGTGG+AGG + tig0020778:101873-101892 Msa1385900:CDS 45.0%
GATGAATATTAGACGGCGCT+AGG + tig0020778:102760-102779 Msa1385900:intron 45.0%
! GCTTCTTTGACGGCATTTTG+TGG + tig0020778:102932-102951 Msa1385900:intron 45.0%
TGCACAAATGCGTGTTGTAC+AGG + tig0020778:103239-103258 Msa1385900:CDS 45.0%
CCTGAAGAGTTTCCACAGAA+GGG + tig0020778:103726-103745 Msa1385900:CDS 45.0%
! GGATGTTCCTTTTGCTGCTA+AGG - tig0020778:103769-103788 None:intergenic 45.0%
ATCCCCAGTACAGTTTCAGA+AGG + tig0020778:103785-103804 Msa1385900:CDS 45.0%
! AGATGTAGACAAGAGGGTAC+TGG + tig0020778:103965-103984 Msa1385900:intron 45.0%
CTCCAAACCATGCACTACAA+GGG - tig0020778:104035-104054 None:intergenic 45.0%
ACTCCAAACCATGCACTACA+AGG - tig0020778:104036-104055 None:intergenic 45.0%
! AGTCCGAGATTTTGCTTGTC+TGG + tig0020778:104053-104072 Msa1385900:intron 45.0%
GAGCCAGACAAGCAAAATCT+CGG - tig0020778:104059-104078 None:intergenic 45.0%
AGAGGGAGATCTCTCCTTTA+TGG + tig0020778:104297-104316 Msa1385900:intron 45.0%
GAGGGAGATCTCTCCTTTAT+GGG + tig0020778:104298-104317 Msa1385900:intron 45.0%
TTTGAGGGGATTGTATCACC+AGG - tig0020778:104396-104415 None:intergenic 45.0%
!!! TGTGTTTTGATAAGTGGCGC+AGG - tig0020778:104545-104564 None:intergenic 45.0%
GAGCTTTCTCCTATGGTGTT+TGG - tig0020778:104595-104614 None:intergenic 45.0%
AGTGAACCTGGTAACCAATC+TGG + tig0020778:104623-104642 Msa1385900:three_prime_UTR 45.0%
! TGATGACCAGATTGGTTACC+AGG - tig0020778:104632-104651 None:intergenic 45.0%
! CTCTGAGGAGATGAAGAGAG+TGG - tig0020778:101435-101454 None:intergenic 50.0%
AGCCTCCACTCAACCTCATT+TGG - tig0020778:101878-101897 None:intergenic 50.0%
GCTTGTCAAAACACCGGTCA+CGG - tig0020778:102854-102873 None:intergenic 50.0%
GTGTGCTTTGCAGGGTGATT+TGG + tig0020778:103370-103389 Msa1385900:intron 50.0%
! TGCTTTGCAGGGTGATTTGG+AGG + tig0020778:103373-103392 Msa1385900:intron 50.0%
! TTTGCAGGGTGATTTGGAGG+AGG + tig0020778:103376-103395 Msa1385900:intron 50.0%
! TTGCAGGGTGATTTGGAGGA+GGG + tig0020778:103377-103396 Msa1385900:intron 50.0%
GCCTGAAGAGTTTCCACAGA+AGG + tig0020778:103725-103744 Msa1385900:CDS 50.0%
CCCTTCTGTGGAAACTCTTC+AGG - tig0020778:103729-103748 None:intergenic 50.0%
TTGCTAGCCCTTGTAGTGCA+TGG + tig0020778:104025-104044 Msa1385900:intron 50.0%
AGCCCTTGTAGTGCATGGTT+TGG + tig0020778:104030-104049 Msa1385900:intron 50.0%
CCAAGCTGAGCTTTCTCCTA+TGG - tig0020778:104602-104621 None:intergenic 50.0%
CCATAGGAGAAAGCTCAGCT+TGG + tig0020778:104599-104618 Msa1385900:three_prime_UTR 50.0%
TTAAATGGCGACGCCGTGAC+CGG + tig0020778:102838-102857 Msa1385900:intron 55.0%
GATCCGCTGATGCGAGTCAA+GGG + tig0020778:104486-104505 Msa1385900:three_prime_UTR 55.0%
ATCCGCTGATGCGAGTCAAG+GGG + tig0020778:104487-104506 Msa1385900:three_prime_UTR 55.0%
! AACCCCTTGACTCGCATCAG+CGG - tig0020778:104492-104511 None:intergenic 55.0%
!! GCTCAGCTTGGTAGTGAACC+TGG + tig0020778:104611-104630 Msa1385900:three_prime_UTR 55.0%
GGATCCGCTGATGCGAGTCA+AGG + tig0020778:104485-104504 Msa1385900:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0020778 gene 101392 104772 101392 ID=Msa1385900;Name=Msa1385900
tig0020778 mRNA 101392 104772 101392 ID=Msa1385900-mRNA-1;Parent=Msa1385900;Name=Msa1385900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=21|1|1|1|0.75|0.6|5|304|333
tig0020778 exon 101392 102000 101392 ID=Msa1385900-mRNA-1:exon:9850;Parent=Msa1385900-mRNA-1
tig0020778 exon 103114 103260 103114 ID=Msa1385900-mRNA-1:exon:9851;Parent=Msa1385900-mRNA-1
tig0020778 exon 103383 103463 103383 ID=Msa1385900-mRNA-1:exon:9852;Parent=Msa1385900-mRNA-1
tig0020778 exon 103654 103844 103654 ID=Msa1385900-mRNA-1:exon:9853;Parent=Msa1385900-mRNA-1
tig0020778 exon 104474 104772 104474 ID=Msa1385900-mRNA-1:exon:9854;Parent=Msa1385900-mRNA-1
tig0020778 five_prime_UTR 101392 101412 101392 ID=Msa1385900-mRNA-1:five_prime_utr;Parent=Msa1385900-mRNA-1
tig0020778 CDS 101413 102000 101413 ID=Msa1385900-mRNA-1:cds;Parent=Msa1385900-mRNA-1
tig0020778 CDS 103114 103260 103114 ID=Msa1385900-mRNA-1:cds;Parent=Msa1385900-mRNA-1
tig0020778 CDS 103383 103463 103383 ID=Msa1385900-mRNA-1:cds;Parent=Msa1385900-mRNA-1
tig0020778 CDS 103654 103839 103654 ID=Msa1385900-mRNA-1:cds;Parent=Msa1385900-mRNA-1
tig0020778 three_prime_UTR 103840 103844 103840 ID=Msa1385900-mRNA-1:three_prime_utr;Parent=Msa1385900-mRNA-1
tig0020778 three_prime_UTR 104474 104772 104474 ID=Msa1385900-mRNA-1:three_prime_utr;Parent=Msa1385900-mRNA-1
Gene Sequence

>Msa1385900

ATGGCTTCTACTGCAACAACCACTCTCTTCATCTCCTCAGAGTTCAAACCATATCTCCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAACAAACCCTTATCAATTTCACTTCAACCATCAAAATTCCGTGCTACCCATTTATCACTATGCACTTGTTCCCTTACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCCGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTCTTGTTAGAGCTCTTCATGGTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCTATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCGTGTTGTACAGGGTGATTTGGAGGAGGGCTTGAAAAGATGTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATCTTTGCCAGGGAATAATATACAGTCTTCTAGATAAAAAGGAGGAAGCTGCAAAACAGTTTGAAACATATCAAGCTCTTGTGCCTGAAGAGTTTCCACAGAAGGGATTTCTTGATGATATCACCTTAGCAGCAAAAGGAACATCCCCAGTACAGTTTCAGAAGGAATTCAGAAATCAATTTTCTGACCAAAAATAG

Protein sequence

>Msa1385900

MASTATTTLFISSEFKPYLPNSLLLPRIRICNKPLSISLQPSKFRATHLSLCTCSLTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLVRALHGLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMRVVQGDLEEGLKRCQDLIDQNPRDFRPYLCQGIIYSLLDKKEEAAKQFETYQALVPEEFPQKGFLDDITLAAKGTSPVQFQKEFRNQFSDQK*