AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423360 MtrunA17_Chr3g0124551 99.692 325 1 0 1 325 1 325 0.0 665
Msa0423360 MtrunA17_Chr4g0063131 37.609 343 149 10 4 325 14 312 1.91e-63 203
Msa0423360 MtrunA17_Chr2g0334241 47.222 144 73 1 31 174 54 194 1.97e-37 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423360 AT2G22120.2 85.583 326 44 2 1 325 1 324 0.0 564
Msa0423360 AT2G22120.1 85.583 326 44 2 1 325 1 324 0.0 561
Msa0423360 AT1G11020.1 41.401 314 127 10 25 325 52 321 7.31e-62 200
Msa0423360 AT1G50440.5 48.936 141 66 3 32 169 60 197 3.67e-39 138
Msa0423360 AT1G50440.4 48.252 143 71 1 32 174 60 199 1.02e-38 137
Msa0423360 AT1G50440.3 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0423360 AT1G50440.3 41.667 84 37 2 241 324 178 249 2.34e-11 63.5
Msa0423360 AT1G50440.1 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0423360 AT1G50440.1 41.667 84 37 2 241 324 178 249 2.34e-11 63.5
Msa0423360 AT1G50440.2 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0423360 AT1G50440.2 41.667 84 37 2 241 324 178 249 2.34e-11 63.5

Find 115 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCTTGCTTGGCCTTTC+TGG -0.016773 3_2:+73184238 Msa0423360:CDS
TATTACCTCACTGGCATATT+TGG 0.173606 3_2:+73183945 Msa0423360:CDS
CATAATGGCTTTGATTGTTC+TGG 0.199353 3_2:+73185073 Msa0423360:CDS
CCACTTACTCCTTGATATAT+TGG 0.218550 3_2:+73186395 Msa0423360:three_prime_UTR
GGTGGTTGTTTGGGAGGTGC+TGG 0.240913 3_2:+73185026 Msa0423360:CDS
TAGATGGTTACCAGCAAAAT+TGG 0.258741 3_2:+73183977 Msa0423360:CDS
TTGGGAGGTGCTGGGGAAGC+AGG 0.268603 3_2:+73185035 Msa0423360:CDS
AATACCCTTATTGAGTAAAA+TGG 0.270630 3_2:+73186520 Msa0423360:three_prime_UTR
GTATACTAATGTAAAGAAAA+TGG 0.288180 3_2:+73186326 Msa0423360:three_prime_UTR
ACTATCACATACTTGCTAAA+AGG 0.302128 3_2:+73185171 Msa0423360:CDS
TTGCCTTGCTTGGCCTTTCT+GGG 0.302492 3_2:+73184239 Msa0423360:CDS
GTGGTTGTTTGGGAGGTGCT+GGG 0.315040 3_2:+73185027 Msa0423360:CDS
AATTGTTGAACATGCTCAAT+TGG 0.315543 3_2:-73186078 None:intergenic
ATCGAGAGTGTTTGGATCAT+TGG 0.320049 3_2:+73182902 Msa0423360:CDS
AATGCTGAATAACATATTAC+AGG 0.335706 3_2:+73186362 Msa0423360:three_prime_UTR
CAGTGTATTGGTGGCAACTA+TGG 0.337443 3_2:+73185124 Msa0423360:CDS
AGAATTATGAATTTGATTAG+AGG 0.338703 3_2:-73181238 None:intergenic
CTATGGTGGGTCAACGGATA+TGG 0.338754 3_2:+73185141 Msa0423360:CDS
TATTTGGTTTATCTAATAGA+TGG 0.346647 3_2:+73183961 Msa0423360:CDS
ACAGAATGTGGTGGTTGTTT+GGG 0.350267 3_2:+73185017 Msa0423360:CDS
AAAATTGGCTTCGTATTCTC+TGG 0.357685 3_2:+73183992 Msa0423360:CDS
AACAGAATGTGGTGGTTGTT+TGG 0.360278 3_2:+73185016 Msa0423360:CDS
TGCCAGGCACTCTTTGTTTG+TGG 0.365795 3_2:+73184952 Msa0423360:CDS
GCTACCATTACTATTCATAA+TGG 0.370651 3_2:+73185058 Msa0423360:CDS
ACATGAACACGCAAATGATA+TGG 0.373142 3_2:-73183728 None:intergenic
ATATGTTCATCGAGAGTGTT+TGG 0.381405 3_2:+73182894 Msa0423360:CDS
CAAATGATATGGAGCCTTGC+AGG 0.383575 3_2:-73183717 None:intergenic
GAAAGATAGGTAGAGGTAGA+AGG 0.386299 3_2:+73181183 Msa0423360:five_prime_UTR
TCGAAGAGTTCGCAATGATT+TGG 0.388817 3_2:+73184282 Msa0423360:CDS
ATAATGGCTTTGATTGTTCT+GGG 0.389717 3_2:+73185074 Msa0423360:CDS
TGTCTTTGTTGCTGTCAACC+TGG 0.404337 3_2:+73184325 Msa0423360:CDS
TTTATTACAAACGGTGAAAT+GGG 0.415105 3_2:-73181049 None:intergenic
AGTTGAATAGAAAGAAAGAT+AGG 0.418929 3_2:+73181170 Msa0423360:five_prime_UTR
GTTCAACAATTGAAAACATT+GGG 0.429700 3_2:+73186090 Msa0423360:CDS
GAAGTACCTTTGCACTTACA+AGG 0.446339 3_2:-73182868 None:intergenic
TGGGAGGTGCTGGGGAAGCA+GGG 0.446534 3_2:+73185036 Msa0423360:CDS
TCCTCGATCGACCTCGAAGC+TGG 0.452350 3_2:+73181374 Msa0423360:CDS
GAAGGATCGACGGGAGGAAG+AGG 0.452406 3_2:-73181353 None:intergenic
GAGAGATGACAGGGTCTGAT+TGG 0.454470 3_2:+73186040 Msa0423360:CDS
CCAATATATCAAGGAGTAAG+TGG 0.457886 3_2:-73186395 None:intergenic
ATTGTTGAACATGCTCAATT+GGG 0.459333 3_2:-73186077 None:intergenic
ACATGCTCAATTGGGAGGGC+TGG 0.464574 3_2:-73186069 None:intergenic
AATCCGGCACTGGATTTGTT+CGG 0.468251 3_2:-73181402 None:intergenic
GGAAAGCAGTAAAAGTCAAA+AGG 0.473277 3_2:+73181075 Msa0423360:five_prime_UTR
CATCAGTTTCGAGACAAATC+CGG 0.477726 3_2:-73181418 None:intergenic
TGGTTGTTTGGGAGGTGCTG+GGG 0.478836 3_2:+73185028 Msa0423360:CDS
CCATTGAAATTGAGCGGAGG+AGG 0.485770 3_2:-73181292 None:intergenic
GACTCATTCAAACTCATAAG+AGG 0.486898 3_2:-73186113 None:intergenic
GTTCGGAAGGACCAGCTTCG+AGG 0.486967 3_2:-73181385 None:intergenic
GTCCACAAACAAAGAGTGCC+TGG 0.491072 3_2:-73184954 None:intergenic
GGATCGACGGGAGGAAGAGG+TGG 0.492231 3_2:-73181350 None:intergenic
GTCTTTGTTGCTGTCAACCT+GGG 0.492579 3_2:+73184326 Msa0423360:CDS
ATGTTGCTGCTGATAGGAAA+TGG 0.495568 3_2:+73183747 Msa0423360:CDS
TGTGCTGACTGTCATTTGCC+AGG 0.495824 3_2:+73184936 Msa0423360:CDS
AAATTGGCTTCGTATTCTCT+GGG 0.495827 3_2:+73183993 Msa0423360:CDS
TTTCGAGACAAATCCGGCAC+TGG 0.502240 3_2:-73181412 None:intergenic
TGTTCAACAATTGAAAACAT+TGG 0.502580 3_2:+73186089 Msa0423360:CDS
TAGAGGTAGAAGGAGGAAGA+AGG 0.505789 3_2:+73181193 Msa0423360:five_prime_UTR
ATAGAAAGAAAGATAGGTAG+AGG 0.507946 3_2:+73181176 Msa0423360:five_prime_UTR
TATGCAGATTATTACCTCAC+TGG 0.509216 3_2:+73183936 Msa0423360:intron
GTGTTCATGTTGCTGCTGAT+AGG 0.512174 3_2:+73183741 Msa0423360:CDS
CTTGATATATTGGTGCTGCC+AGG 0.522999 3_2:+73186405 Msa0423360:three_prime_UTR
AAGTAATGAAGCACCCAGAA+AGG 0.537570 3_2:-73184252 None:intergenic
ACCACCACATTCTGTTGCCA+TGG 0.539867 3_2:-73185009 None:intergenic
GATGTCGATGGAGAGATGAC+AGG 0.540296 3_2:+73186030 Msa0423360:CDS
CAAAGACATAATTCTCTACA+AGG 0.540904 3_2:-73184310 None:intergenic
CCTCCTCCGCTCAATTTCAA+TGG 0.543191 3_2:+73181292 Msa0423360:exon
TGCTCAATTGGGAGGGCTGG+AGG 0.549699 3_2:-73186066 None:intergenic
GTCGATCGAGGAAGGATCGA+CGG 0.549972 3_2:-73181363 None:intergenic
CAGCTTACGAAAACAAAGGT+AGG 0.551469 3_2:-73186179 None:intergenic
GGATCATTGGCGATCTGTCA+AGG 0.559553 3_2:+73182915 Msa0423360:CDS
TAATGTAAAGAAAATGGAAG+AGG 0.560828 3_2:+73186332 Msa0423360:three_prime_UTR
AAAGCCATTATGAATAGTAA+TGG 0.561026 3_2:-73185062 None:intergenic
TGAAGAAAATAACAGTGGCC+TGG 0.564165 3_2:-73186423 None:intergenic
TCGATCGAGGAAGGATCGAC+GGG 0.570169 3_2:-73181362 None:intergenic
CTTCCGAACAAATCCAGTGC+CGG 0.570393 3_2:+73181399 Msa0423360:CDS
CTGGCAGCACCAATATATCA+AGG 0.571297 3_2:-73186404 None:intergenic
GTAGGGCGAGTCTACTTCTA+CGG 0.572314 3_2:-73186161 None:intergenic
TGCTCACTGCACTACCTGCA+AGG 0.573977 3_2:+73183703 Msa0423360:CDS
AAGAGGTGGGACGAGAGGTG+AGG 0.574463 3_2:-73181336 None:intergenic
AGTATTTAACAATAAAATTG+CGG 0.577606 3_2:+73186489 Msa0423360:three_prime_UTR
GGAGGAAGAGGTGGGACGAG+AGG 0.579989 3_2:-73181341 None:intergenic
GTTGAACATGCTCAATTGGG+AGG 0.580202 3_2:-73186074 None:intergenic
TGTGTTGAATTTCTGATACA+CGG 0.580231 3_2:+73186282 Msa0423360:three_prime_UTR
GCACCCAGAAAGGCCAAGCA+AGG 0.580394 3_2:-73184242 None:intergenic
TGCTAAAAGGATGTTAACAA+AGG 0.581562 3_2:+73185184 Msa0423360:CDS
GATCGACGGGAGGAAGAGGT+GGG 0.583686 3_2:-73181349 None:intergenic
TGTATTGGTGGCAACTATGG+TGG 0.584245 3_2:+73185127 Msa0423360:CDS
ATAGCTCCTTGTAAGTGCAA+AGG 0.586353 3_2:+73182862 Msa0423360:CDS
AGATAGGTAGAGGTAGAAGG+AGG 0.587353 3_2:+73181186 Msa0423360:five_prime_UTR
CGGATTTGTCTCGAAACTGA+TGG 0.587776 3_2:+73181419 Msa0423360:CDS
GCTTCGAGGTCGATCGAGGA+AGG 0.591650 3_2:-73181371 None:intergenic
GGTGTCTGATTCTGAGTGAT+CGG 0.596499 3_2:-73181315 None:intergenic
TATGTTGTTGAAGATGTCGA+TGG 0.604679 3_2:+73186018 Msa0423360:CDS
AGCTTACGAAAACAAAGGTA+GGG 0.606339 3_2:-73186178 None:intergenic
CGGCACTGGATTTGTTCGGA+AGG 0.606477 3_2:-73181398 None:intergenic
GAATGTGGTGGTTGTTTGGG+AGG 0.607809 3_2:+73185020 Msa0423360:CDS
ACCAGCTTCGAGGTCGATCG+AGG 0.612461 3_2:-73181375 None:intergenic
CATTGAAATTGAGCGGAGGA+GGG 0.613728 3_2:-73181291 None:intergenic
TAATCTACACTTTCACACAC+AGG 0.620246 3_2:-73181110 None:intergenic
TGGCAACTATGGTGGGTCAA+CGG 0.621902 3_2:+73185135 Msa0423360:CDS
CTGAGCTTCTATTATATATG+CGG 0.622061 3_2:+73184030 Msa0423360:CDS
ATCGAGGAAGGATCGACGGG+AGG 0.639041 3_2:-73181359 None:intergenic
GATCGGCCATTGAAATTGAG+CGG 0.641682 3_2:-73181298 None:intergenic
TTGAACATGCTCAATTGGGA+GGG 0.643417 3_2:-73186073 None:intergenic
ATGTCGATGGAGAGATGACA+GGG 0.646001 3_2:+73186031 Msa0423360:CDS
TGTAATCAAACTGAATTGAG+CGG 0.656179 3_2:-73186249 None:intergenic
AATTGGCTTCGTATTCTCTG+GGG 0.662271 3_2:+73183994 Msa0423360:CDS
GGAACCATGGCAACAGAATG+TGG 0.665999 3_2:+73185005 Msa0423360:CDS
CGGCCATTGAAATTGAGCGG+AGG 0.669127 3_2:-73181295 None:intergenic
AGAACAGCTTACGAAAACAA+AGG 0.678776 3_2:-73186183 None:intergenic
AACAGTGAAGAAAATAACAG+TGG 0.687560 3_2:-73186428 None:intergenic
GTATTGGTGGCAACTATGGT+GGG 0.696502 3_2:+73185128 Msa0423360:CDS
ATAAACCAAATATGCCAGTG+AGG 0.716327 3_2:-73183950 None:intergenic
ACCATGGCAACAGAATGTGG+TGG 0.804367 3_2:+73185008 Msa0423360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATCAAACAAA+TGG - chr3_2:73181544-73181563 None:intergenic 10.0%
!! ATATTGAAATAATTGTTTAT+AGG + chr3_2:73181894-73181913 Msa0423360:intron 10.0%
!! TATTGAAATAATTGTTTATA+GGG + chr3_2:73181895-73181914 Msa0423360:intron 10.0%
!!! TTAACCTTTTTTAAAAATAT+AGG + chr3_2:73182455-73182474 Msa0423360:intron 10.0%
!!! AAGCAATTTTTTTTTTTTTT+GGG + chr3_2:73182726-73182745 Msa0423360:intron 10.0%
!! AAATAAATAAATTAAAACCT+TGG - chr3_2:73184893-73184912 None:intergenic 10.0%
!! ATAAATAAATATGTATCCAT+CGG - chr3_2:73182490-73182509 None:intergenic 15.0%
!!! GAAGCAATTTTTTTTTTTTT+TGG + chr3_2:73182725-73182744 Msa0423360:intron 15.0%
!!! AGCAATTTTTTTTTTTTTTG+GGG + chr3_2:73182727-73182746 Msa0423360:intron 15.0%
!! ATACATTTATACATTACAAT+CGG - chr3_2:73183882-73183901 None:intergenic 15.0%
!! TATATAGATTATCTAATTCA+GGG + chr3_2:73183899-73183918 Msa0423360:intron 15.0%
!! AAATCCTATATAATTAGTAA+AGG + chr3_2:73185362-73185381 Msa0423360:intron 15.0%
!! AATATTAATAATATCAGACA+GGG - chr3_2:73185597-73185616 None:intergenic 15.0%
!! AGTATTTAACAATAAAATTG+CGG + chr3_2:73186489-73186508 Msa0423360:three_prime_UTR 15.0%
!!! CTTTCCTTTTTTATTACAAA+CGG - chr3_2:73181061-73181080 None:intergenic 20.0%
!! AGAATTATGAATTTGATTAG+AGG - chr3_2:73181241-73181260 None:intergenic 20.0%
!! AATAAAAATCAGCAGAATTT+AGG - chr3_2:73181618-73181637 None:intergenic 20.0%
!!! TACAGTAGAATTTCATATTT+TGG + chr3_2:73182158-73182177 Msa0423360:intron 20.0%
!!! AACACTGCTTATTTTAAAAA+GGG + chr3_2:73182241-73182260 Msa0423360:intron 20.0%
!! GCATCAAATTACAAAATTTA+TGG - chr3_2:73182327-73182346 None:intergenic 20.0%
!!! CTAAACAAATTTTTTTACAG+AGG + chr3_2:73182392-73182411 Msa0423360:intron 20.0%
!!! GTGTCCTATATTTTTAAAAA+AGG - chr3_2:73182462-73182481 None:intergenic 20.0%
!!! AATGTCATTTTTAACTTTTC+CGG - chr3_2:73182609-73182628 None:intergenic 20.0%
!! ATTCCTGATTAATTATTACT+AGG + chr3_2:73183061-73183080 Msa0423360:intron 20.0%
!! ATTAATTATTACTAGGAACT+AGG + chr3_2:73183068-73183087 Msa0423360:intron 20.0%
!! ATCATTGTTTAATTAATCAG+TGG - chr3_2:73183168-73183187 None:intergenic 20.0%
!!! ATGTTTACCTTCTTTATTTT+TGG + chr3_2:73183508-73183527 Msa0423360:intron 20.0%
!! CAAATTACCAAAAATAAAGA+AGG - chr3_2:73183518-73183537 None:intergenic 20.0%
!! AAAAATAGACAAAATATCTC+TGG - chr3_2:73183801-73183820 None:intergenic 20.0%
!!! AGATATTTTGTCTATTTTTC+TGG + chr3_2:73183802-73183821 Msa0423360:CDS 20.0%
!! GTATATAGATTATCTAATTC+AGG + chr3_2:73183898-73183917 Msa0423360:intron 20.0%
!!! TATTTGGTTTATCTAATAGA+TGG + chr3_2:73183961-73183980 Msa0423360:CDS 20.0%
!! ATATACAATATCATCATCAT+TGG - chr3_2:73184513-73184532 None:intergenic 20.0%
!!! AAGCACTTTTATATTTTGAA+GGG - chr3_2:73184627-73184646 None:intergenic 20.0%
!! ATTCTAAATAAACAAAGTGA+CGG - chr3_2:73185340-73185359 None:intergenic 20.0%
!! TCTACCTTTACTAATTATAT+AGG - chr3_2:73185369-73185388 None:intergenic 20.0%
!! GAATATTAATAATATCAGAC+AGG - chr3_2:73185598-73185617 None:intergenic 20.0%
!! TATCCTTAATAATAATTGCA+TGG + chr3_2:73185925-73185944 Msa0423360:intron 20.0%
!! GTATACTAATGTAAAGAAAA+TGG + chr3_2:73186326-73186345 Msa0423360:three_prime_UTR 20.0%
!!! TTTTCCATTTTACTCAATAA+GGG - chr3_2:73186527-73186546 None:intergenic 20.0%
!!! ATTTTCCATTTTACTCAATA+AGG - chr3_2:73186528-73186547 None:intergenic 20.0%
! TTCACCGTTTGTAATAAAAA+AGG + chr3_2:73181054-73181073 Msa0423360:five_prime_UTR 25.0%
! AGTTGAATAGAAAGAAAGAT+AGG + chr3_2:73181170-73181189 Msa0423360:five_prime_UTR 25.0%
! TGAAATTCGAAAGTTGAAAA+GGG - chr3_2:73181466-73181485 None:intergenic 25.0%
! ATGAAATTCGAAAGTTGAAA+AGG - chr3_2:73181467-73181486 None:intergenic 25.0%
!! CTTTCGAATTTCATTTTGTT+AGG + chr3_2:73181473-73181492 Msa0423360:intron 25.0%
! ACAATATCTTGATCATTGAT+TGG + chr3_2:73181687-73181706 Msa0423360:intron 25.0%
!! CAATATCTTGATCATTGATT+GGG + chr3_2:73181688-73181707 Msa0423360:intron 25.0%
!! TCCTAACAACATTAGTTTAA+GGG - chr3_2:73181781-73181800 None:intergenic 25.0%
! CATACCTGAACTAATTATAA+CGG - chr3_2:73181809-73181828 None:intergenic 25.0%
! TGAAATAATTGTTTATAGGG+AGG + chr3_2:73181898-73181917 Msa0423360:intron 25.0%
! ACTTCTTAAAGATGATTCTT+GGG - chr3_2:73182057-73182076 None:intergenic 25.0%
!!! AGTAGTTATTTTTACCTAGA+AGG + chr3_2:73182082-73182101 Msa0423360:intron 25.0%
! TACTGTATAATTTCTACACA+TGG - chr3_2:73182145-73182164 None:intergenic 25.0%
!!! CAACACTGCTTATTTTAAAA+AGG + chr3_2:73182240-73182259 Msa0423360:intron 25.0%
! TTTGTAATTTGATGCATTGA+AGG + chr3_2:73182332-73182351 Msa0423360:intron 25.0%
!!! ATTTGAAGATGATTTGGTTT+TGG - chr3_2:73182359-73182378 None:intergenic 25.0%
! CTTGTAATTTGAAGATGATT+TGG - chr3_2:73182365-73182384 None:intergenic 25.0%
! TATATAAATTTCTCGTCGTT+TGG - chr3_2:73182999-73183018 None:intergenic 25.0%
! AAGTTGTTCTTATACTATGA+TGG - chr3_2:73183029-73183048 None:intergenic 25.0%
! GTTCCTAGTAATAATTAATC+AGG - chr3_2:73183067-73183086 None:intergenic 25.0%
! TCATGATATTCAACGAATTA+CGG - chr3_2:73183254-73183273 None:intergenic 25.0%
!!! TTTCGATTTCTTTTGAGAAA+TGG - chr3_2:73183349-73183368 None:intergenic 25.0%
!! GTGTTTTCAATTTTATAACC+TGG + chr3_2:73183537-73183556 Msa0423360:intron 25.0%
! GTATATAATACAGAATATCC+AGG - chr3_2:73183558-73183577 None:intergenic 25.0%
! AGGTAATAATCTGCATAAAA+AGG - chr3_2:73183933-73183952 None:intergenic 25.0%
! CTTATATGATATTCTTATCC+AGG + chr3_2:73184086-73184105 Msa0423360:intron 25.0%
!! AACTGGTAACATTTTATATG+TGG - chr3_2:73184160-73184179 None:intergenic 25.0%
! TCAGTAATTCATAACAAAAC+TGG - chr3_2:73184177-73184196 None:intergenic 25.0%
! TGAATTACTGAATTTCATGT+TGG + chr3_2:73184186-73184205 Msa0423360:intron 25.0%
! AAGCAAGGCAAAAAATAATA+GGG - chr3_2:73184230-73184249 None:intergenic 25.0%
! TTATATATAATGGCAATACC+AGG + chr3_2:73184462-73184481 Msa0423360:intron 25.0%
!!! CAAGCACTTTTATATTTTGA+AGG - chr3_2:73184628-73184647 None:intergenic 25.0%
!!! GTCTATTTTGGTCTAAATTT+TGG + chr3_2:73184728-73184747 Msa0423360:intron 25.0%
! ACATAAATATAAAACTCAGC+TGG + chr3_2:73184783-73184802 Msa0423360:intron 25.0%
! AAAGCCATTATGAATAGTAA+TGG - chr3_2:73185065-73185084 None:intergenic 25.0%
!!! AAGTTTTTGATTGAGATTCT+TGG - chr3_2:73185393-73185412 None:intergenic 25.0%
!! ATTGAAAGGATATTTCTGAT+GGG + chr3_2:73185465-73185484 Msa0423360:intron 25.0%
! TATGTAATAAGGGGAAATTT+GGG - chr3_2:73185696-73185715 None:intergenic 25.0%
! TTTCGGATAGTATGTAATAA+GGG - chr3_2:73185706-73185725 None:intergenic 25.0%
! AAATCAACAATTCAAGACAA+TGG - chr3_2:73185968-73185987 None:intergenic 25.0%
! TGTTCAACAATTGAAAACAT+TGG + chr3_2:73186089-73186108 Msa0423360:CDS 25.0%
! GTTCAACAATTGAAAACATT+GGG + chr3_2:73186090-73186109 Msa0423360:CDS 25.0%
! TAATGTAAAGAAAATGGAAG+AGG + chr3_2:73186332-73186351 Msa0423360:three_prime_UTR 25.0%
! AATGCTGAATAACATATTAC+AGG + chr3_2:73186362-73186381 Msa0423360:three_prime_UTR 25.0%
! AATACCCTTATTGAGTAAAA+TGG + chr3_2:73186520-73186539 Msa0423360:three_prime_UTR 25.0%
ATAGAAAGAAAGATAGGTAG+AGG + chr3_2:73181176-73181195 Msa0423360:five_prime_UTR 30.0%
TGGACTCAAATATAAGCAAA+TGG + chr3_2:73181727-73181746 Msa0423360:intron 30.0%
! CATTAGTTTAAGGGAACTAT+CGG - chr3_2:73181772-73181791 None:intergenic 30.0%
TCCCTTAAACTAATGTTGTT+AGG + chr3_2:73181777-73181796 Msa0423360:intron 30.0%
! CTCCTAACAACATTAGTTTA+AGG - chr3_2:73181782-73181801 None:intergenic 30.0%
ATGACCGTTATAATTAGTTC+AGG + chr3_2:73181802-73181821 Msa0423360:intron 30.0%
CGTTATAATTAGTTCAGGTA+TGG + chr3_2:73181807-73181826 Msa0423360:intron 30.0%
TACACACCCCATAAAAAAAT+TGG - chr3_2:73181875-73181894 None:intergenic 30.0%
TATATATAGCAATAGTCGCA+AGG + chr3_2:73181921-73181940 Msa0423360:intron 30.0%
CACTTCTTAAAGATGATTCT+TGG - chr3_2:73182058-73182077 None:intergenic 30.0%
TCAGAAATGACCTATATTAC+AGG + chr3_2:73182419-73182438 Msa0423360:intron 30.0%
CAGAAATGACCTATATTACA+GGG + chr3_2:73182420-73182439 Msa0423360:intron 30.0%
AGAAATGACCTATATTACAG+GGG + chr3_2:73182421-73182440 Msa0423360:intron 30.0%
TAGTAGTGATGATCAATGAA+TGG - chr3_2:73182653-73182672 None:intergenic 30.0%
ATTATTACTAGGAACTAGGA+AGG + chr3_2:73183072-73183091 Msa0423360:intron 30.0%
TTATTACTAGGAACTAGGAA+GGG + chr3_2:73183073-73183092 Msa0423360:intron 30.0%
CATGATATTCAACGAATTAC+GGG - chr3_2:73183253-73183272 None:intergenic 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG - chr3_2:73183344-73183363 None:intergenic 30.0%
AGAAATCGAAAGATCCATTT+AGG + chr3_2:73183358-73183377 Msa0423360:intron 30.0%
GGCTTCAAAAACTAAACTTT+AGG - chr3_2:73183614-73183633 None:intergenic 30.0%
! TAAGCGTTGTATGTGTTAAA+TGG + chr3_2:73183654-73183673 Msa0423360:intron 30.0%
GACGAAAAAACGAAATTTCA+AGG - chr3_2:73183777-73183796 None:intergenic 30.0%
CTGAGCTTCTATTATATATG+CGG + chr3_2:73184030-73184049 Msa0423360:CDS 30.0%
! GGTAACATTTTATATGTGGA+AGG - chr3_2:73184156-73184175 None:intergenic 30.0%
CAAGCAAGGCAAAAAATAAT+AGG - chr3_2:73184231-73184250 None:intergenic 30.0%
!!! CTATTATTTTTTGCCTTGCT+TGG + chr3_2:73184229-73184248 Msa0423360:CDS 30.0%
CAAAGACATAATTCTCTACA+AGG - chr3_2:73184313-73184332 None:intergenic 30.0%
!! TGTGTTTTTAACAGTGTCAA+AGG - chr3_2:73184381-73184400 None:intergenic 30.0%
ATTGCTTTAGCACAAAATAG+CGG + chr3_2:73184544-73184563 Msa0423360:intron 30.0%
! ACTGCACTTACATTTTGTAA+TGG + chr3_2:73184572-73184591 Msa0423360:intron 30.0%
! CTGCACTTACATTTTGTAAT+GGG + chr3_2:73184573-73184592 Msa0423360:intron 30.0%
TATTATGCCAGAACTATGAT+TGG + chr3_2:73184691-73184710 Msa0423360:intron 30.0%
!!! ATGGTATTTGGTGTCTATTT+TGG + chr3_2:73184716-73184735 Msa0423360:intron 30.0%
TATGTGATGCATCTTATTGT+TGG + chr3_2:73184827-73184846 Msa0423360:intron 30.0%
CTAATGATGATTAATGACCA+AGG + chr3_2:73184873-73184892 Msa0423360:intron 30.0%
GCTACCATTACTATTCATAA+TGG + chr3_2:73185058-73185077 Msa0423360:CDS 30.0%
!! ATAATGGCTTTGATTGTTCT+GGG + chr3_2:73185074-73185093 Msa0423360:CDS 30.0%
! TGGGACTTTTTACAGTAATT+GGG + chr3_2:73185093-73185112 Msa0423360:CDS 30.0%
! TGGGATATTTTACAGTGTAT+TGG + chr3_2:73185112-73185131 Msa0423360:CDS 30.0%
! GATATTTTACAGTGTATTGG+TGG + chr3_2:73185115-73185134 Msa0423360:CDS 30.0%
! ACTATCACATACTTGCTAAA+AGG + chr3_2:73185171-73185190 Msa0423360:CDS 30.0%
TGCTAAAAGGATGTTAACAA+AGG + chr3_2:73185184-73185203 Msa0423360:CDS 30.0%
! GATGTTAACAAAGGTTTGTT+TGG + chr3_2:73185193-73185212 Msa0423360:intron 30.0%
TTTCTCATTTACTGTGTCTT+TGG + chr3_2:73185221-73185240 Msa0423360:intron 30.0%
GCTAATTGCATAAATGCATT+AGG - chr3_2:73185309-73185328 None:intergenic 30.0%
! GATTGAAAGGATATTTCTGA+TGG + chr3_2:73185464-73185483 Msa0423360:intron 30.0%
ATTAATAATATCAGACAGGG+AGG - chr3_2:73185594-73185613 None:intergenic 30.0%
ATGTAATAAGGGGAAATTTG+GGG - chr3_2:73185695-73185714 None:intergenic 30.0%
GTATGTAATAAGGGGAAATT+TGG - chr3_2:73185697-73185716 None:intergenic 30.0%
TTCGGATAGTATGTAATAAG+GGG - chr3_2:73185705-73185724 None:intergenic 30.0%
GTTTCGGATAGTATGTAATA+AGG - chr3_2:73185707-73185726 None:intergenic 30.0%
CTGTGGTACAATTTAGTTAT+GGG + chr3_2:73185849-73185868 Msa0423360:intron 30.0%
GCACCATGCAATTATTATTA+AGG - chr3_2:73185931-73185950 None:intergenic 30.0%
ATTGTTGAACATGCTCAATT+GGG - chr3_2:73186080-73186099 None:intergenic 30.0%
AATTGTTGAACATGCTCAAT+TGG - chr3_2:73186081-73186100 None:intergenic 30.0%
TGTAATCAAACTGAATTGAG+CGG - chr3_2:73186252-73186271 None:intergenic 30.0%
TGTGTTGAATTTCTGATACA+CGG + chr3_2:73186282-73186301 Msa0423360:three_prime_UTR 30.0%
AACAGTGAAGAAAATAACAG+TGG - chr3_2:73186431-73186450 None:intergenic 30.0%
GGAAAGCAGTAAAAGTCAAA+AGG + chr3_2:73181075-73181094 Msa0423360:five_prime_UTR 35.0%
TAATCTACACTTTCACACAC+AGG - chr3_2:73181113-73181132 None:intergenic 35.0%
CTATTATTTCCGATAACCGT+TGG - chr3_2:73181952-73181971 None:intergenic 35.0%
GAAATGACCTATATTACAGG+GGG + chr3_2:73182422-73182441 Msa0423360:intron 35.0%
! TGTTTTACCCCCTGTAATAT+AGG - chr3_2:73182432-73182451 None:intergenic 35.0%
AAATATGTATCCATCGGTGT+TGG - chr3_2:73182484-73182503 None:intergenic 35.0%
CATTCATCCATCTACTATAC+CGG + chr3_2:73182587-73182606 Msa0423360:intron 35.0%
! AACTTTTCCGGTATAGTAGA+TGG - chr3_2:73182597-73182616 None:intergenic 35.0%
ACTCCTTAGACACTTCTATA+GGG - chr3_2:73182691-73182710 None:intergenic 35.0%
TACCTGAGAAGGAAACAAAA+CGG - chr3_2:73182834-73182853 None:intergenic 35.0%
!! TTTTGTTTCCTTCTCAGGTA+GGG + chr3_2:73182834-73182853 Msa0423360:intron 35.0%
!! ATATGTTCATCGAGAGTGTT+TGG + chr3_2:73182894-73182913 Msa0423360:CDS 35.0%
AGTCAGTATCTTAAACTGAC+TGG + chr3_2:73183108-73183127 Msa0423360:intron 35.0%
TGAATATCATGACACTGCAA+AGG + chr3_2:73183262-73183281 Msa0423360:intron 35.0%
AAATGAGCAAGGTATAGACA+GGG - chr3_2:73183468-73183487 None:intergenic 35.0%
TTCTTTGACTGAAATGAGCA+AGG - chr3_2:73183479-73183498 None:intergenic 35.0%
TGCTCATTTCAGTCAAAGAA+AGG + chr3_2:73183479-73183498 Msa0423360:intron 35.0%
TGTTAAATGGTGTACTTTGC+AGG + chr3_2:73183667-73183686 Msa0423360:intron 35.0%
ACATGAACACGCAAATGATA+TGG - chr3_2:73183731-73183750 None:intergenic 35.0%
CAATCGGATAAGTATGTAGA+TGG - chr3_2:73183866-73183885 None:intergenic 35.0%
TATGCAGATTATTACCTCAC+TGG + chr3_2:73183936-73183955 Msa0423360:intron 35.0%
TATTACCTCACTGGCATATT+TGG + chr3_2:73183945-73183964 Msa0423360:CDS 35.0%
ATAAACCAAATATGCCAGTG+AGG - chr3_2:73183953-73183972 None:intergenic 35.0%
TAGATGGTTACCAGCAAAAT+TGG + chr3_2:73183977-73183996 Msa0423360:CDS 35.0%
! AAAATTGGCTTCGTATTCTC+TGG + chr3_2:73183992-73184011 Msa0423360:CDS 35.0%
! AAATTGGCTTCGTATTCTCT+GGG + chr3_2:73183993-73184012 Msa0423360:CDS 35.0%
AAGGAGAAAACTCTGAACTT+GGG - chr3_2:73184137-73184156 None:intergenic 35.0%
! ATGTTGGCATTTTCAAATGC+AGG + chr3_2:73184202-73184221 Msa0423360:intron 35.0%
! TTTTTAACAGTGTCAAAGGC+TGG - chr3_2:73184377-73184396 None:intergenic 35.0%
TTGTGCTAAAGCAATGAGAA+TGG - chr3_2:73184539-73184558 None:intergenic 35.0%
!! TATAAAAGTGCTTGTCGTTC+TGG + chr3_2:73184634-73184653 Msa0423360:intron 35.0%
CTATGATTGGAGATGGTATT+TGG + chr3_2:73184704-73184723 Msa0423360:intron 35.0%
!! CATAATGGCTTTGATTGTTC+TGG + chr3_2:73185073-73185092 Msa0423360:CDS 35.0%
! CTGGGACTTTTTACAGTAAT+TGG + chr3_2:73185092-73185111 Msa0423360:CDS 35.0%
!! AAACAAAGTGACGGATAACT+GGG - chr3_2:73185331-73185350 None:intergenic 35.0%
!! TAAACAAAGTGACGGATAAC+TGG - chr3_2:73185332-73185351 None:intergenic 35.0%
CACTTCAAATCTCGATTGAA+AGG + chr3_2:73185451-73185470 Msa0423360:intron 35.0%
TCACATGCATTGTTCTGTAT+GGG + chr3_2:73185532-73185551 Msa0423360:intron 35.0%
TGTAATAAGGGGAAATTTGG+GGG - chr3_2:73185694-73185713 None:intergenic 35.0%
AAGAAATGGAAGAGCAATAG+GGG - chr3_2:73185828-73185847 None:intergenic 35.0%
GAAGAAATGGAAGAGCAATA+GGG - chr3_2:73185829-73185848 None:intergenic 35.0%
AATTGTACCACAGGAAGAAA+TGG - chr3_2:73185842-73185861 None:intergenic 35.0%
CCATAACTAAATTGTACCAC+AGG - chr3_2:73185851-73185870 None:intergenic 35.0%
CCTGTGGTACAATTTAGTTA+TGG + chr3_2:73185848-73185867 Msa0423360:intron 35.0%
TGGTACAATTTAGTTATGGG+AGG + chr3_2:73185852-73185871 Msa0423360:intron 35.0%
GGTACAATTTAGTTATGGGA+GGG + chr3_2:73185853-73185872 Msa0423360:intron 35.0%
AAAATGTCTGTAATGCTCAC+TGG - chr3_2:73185896-73185915 None:intergenic 35.0%
GACAATGGCAGAATATTTCA+GGG - chr3_2:73185953-73185972 None:intergenic 35.0%
AGACAATGGCAGAATATTTC+AGG - chr3_2:73185954-73185973 None:intergenic 35.0%
! CTGTTGTTACTTCTCATCAT+AGG + chr3_2:73185993-73186012 Msa0423360:intron 35.0%
TATGTTGTTGAAGATGTCGA+TGG + chr3_2:73186018-73186037 Msa0423360:CDS 35.0%
GACTCATTCAAACTCATAAG+AGG - chr3_2:73186116-73186135 None:intergenic 35.0%
AGCTTACGAAAACAAAGGTA+GGG - chr3_2:73186181-73186200 None:intergenic 35.0%
AGAACAGCTTACGAAAACAA+AGG - chr3_2:73186186-73186205 None:intergenic 35.0%
CCAATATATCAAGGAGTAAG+TGG - chr3_2:73186398-73186417 None:intergenic 35.0%
CCACTTACTCCTTGATATAT+TGG + chr3_2:73186395-73186414 Msa0423360:three_prime_UTR 35.0%
GAAAGATAGGTAGAGGTAGA+AGG + chr3_2:73181183-73181202 Msa0423360:five_prime_UTR 40.0%
CATCAGTTTCGAGACAAATC+CGG - chr3_2:73181421-73181440 None:intergenic 40.0%
! TGGGCTTTGATTCGAATTGT+TGG + chr3_2:73181707-73181726 Msa0423360:intron 40.0%
!!! TCAGGGGGCCAATTTTTTTA+TGG + chr3_2:73181864-73181883 Msa0423360:intron 40.0%
!!! CAGGGGGCCAATTTTTTTAT+GGG + chr3_2:73181865-73181884 Msa0423360:intron 40.0%
!!! AGGGGGCCAATTTTTTTATG+GGG + chr3_2:73181866-73181885 Msa0423360:intron 40.0%
ATATAGCAATAGTCGCAAGG+AGG + chr3_2:73181924-73181943 Msa0423360:intron 40.0%
TATAGCAATAGTCGCAAGGA+GGG + chr3_2:73181925-73181944 Msa0423360:intron 40.0%
ACTCAACACATACTCCTTCT+AGG - chr3_2:73182099-73182118 None:intergenic 40.0%
! TAGAAGGAGTATGTGTTGAG+TGG + chr3_2:73182098-73182117 Msa0423360:intron 40.0%
GTTCATGCTTCATAGCTCAA+CGG - chr3_2:73182204-73182223 None:intergenic 40.0%
ATGAAGCATGAACTTCGACA+TGG + chr3_2:73182211-73182230 Msa0423360:intron 40.0%
TGAGCCAATTTCGGTTTACA+GGG - chr3_2:73182284-73182303 None:intergenic 40.0%
TTGAGCCAATTTCGGTTTAC+AGG - chr3_2:73182285-73182304 None:intergenic 40.0%
CTTGTGGTTTGAGCCAATTT+CGG - chr3_2:73182293-73182312 None:intergenic 40.0%
! GAAATTGGCTCAAACCACAA+GGG + chr3_2:73182292-73182311 Msa0423360:intron 40.0%
! AAATTGGCTCAAACCACAAG+GGG + chr3_2:73182293-73182312 Msa0423360:intron 40.0%
!! AAGCCCTATAGAAGTGTCTA+AGG + chr3_2:73182685-73182704 Msa0423360:intron 40.0%
CACTCCTTAGACACTTCTAT+AGG - chr3_2:73182692-73182711 None:intergenic 40.0%
!!! TACCGTTTTGTTTCCTTCTC+AGG + chr3_2:73182829-73182848 Msa0423360:intron 40.0%
!!! GTTTTGTTTCCTTCTCAGGT+AGG + chr3_2:73182833-73182852 Msa0423360:intron 40.0%
TATGAAATCCCTACCTGAGA+AGG - chr3_2:73182845-73182864 None:intergenic 40.0%
ATAGCTCCTTGTAAGTGCAA+AGG + chr3_2:73182862-73182881 Msa0423360:CDS 40.0%
! GAAGTACCTTTGCACTTACA+AGG - chr3_2:73182871-73182890 None:intergenic 40.0%
!! ATCGAGAGTGTTTGGATCAT+TGG + chr3_2:73182902-73182921 Msa0423360:CDS 40.0%
GGGATAGAGAGATAACTGAA+GGG - chr3_2:73183305-73183324 None:intergenic 40.0%
TGGGATAGAGAGATAACTGA+AGG - chr3_2:73183306-73183325 None:intergenic 40.0%
TCAGTTATCTCTCTATCCCA+TGG + chr3_2:73183306-73183325 Msa0423360:intron 40.0%
GAGGATCTCAACTTAACCAT+GGG - chr3_2:73183325-73183344 None:intergenic 40.0%
AGAGGATCTCAACTTAACCA+TGG - chr3_2:73183326-73183345 None:intergenic 40.0%
! GATCCATTTAGGACAGAGAT+AGG + chr3_2:73183369-73183388 Msa0423360:intron 40.0%
GAGAGATAGACACAAATGAG+AGG - chr3_2:73183400-73183419 None:intergenic 40.0%
TCGTTTGGAGAGCTCTATTT+AGG - chr3_2:73183424-73183443 None:intergenic 40.0%
GAGATCCTCTACAATTCGTT+TGG - chr3_2:73183439-73183458 None:intergenic 40.0%
AATGAGCAAGGTATAGACAG+GGG - chr3_2:73183467-73183486 None:intergenic 40.0%
GAAATGAGCAAGGTATAGAC+AGG - chr3_2:73183469-73183488 None:intergenic 40.0%
! AGCAGACTATAAAGTGGGTT+GGG - chr3_2:73183635-73183654 None:intergenic 40.0%
TAGCAGACTATAAAGTGGGT+TGG - chr3_2:73183636-73183655 None:intergenic 40.0%
CGCTTAGCAGACTATAAAGT+GGG - chr3_2:73183640-73183659 None:intergenic 40.0%
ACGCTTAGCAGACTATAAAG+TGG - chr3_2:73183641-73183660 None:intergenic 40.0%
AAATGGTGTACTTTGCAGGA+AGG + chr3_2:73183671-73183690 Msa0423360:intron 40.0%
ATGTTGCTGCTGATAGGAAA+TGG + chr3_2:73183747-73183766 Msa0423360:CDS 40.0%
GAAACAGTTAACCTACAAGC+TGG - chr3_2:73183832-73183851 None:intergenic 40.0%
GTTAACTGTTTCCATCCATC+TGG + chr3_2:73183840-73183859 Msa0423360:intron 40.0%
TAAGTATGTAGATGGCCAGA+TGG - chr3_2:73183858-73183877 None:intergenic 40.0%
! GAATACGAAGCCAATTTTGC+TGG - chr3_2:73183990-73184009 None:intergenic 40.0%
! AATTGGCTTCGTATTCTCTG+GGG + chr3_2:73183994-73184013 Msa0423360:CDS 40.0%
GGAGAAAAGGAGAAAATTCC+TGG - chr3_2:73184107-73184126 None:intergenic 40.0%
AGGAGAAAACTCTGAACTTG+GGG - chr3_2:73184136-73184155 None:intergenic 40.0%
GAAGGAGAAAACTCTGAACT+TGG - chr3_2:73184138-73184157 None:intergenic 40.0%
! AAGTAATGAAGCACCCAGAA+AGG - chr3_2:73184255-73184274 None:intergenic 40.0%
TCGAAGAGTTCGCAATGATT+TGG + chr3_2:73184282-73184301 Msa0423360:CDS 40.0%
! TAAAATCAGTGCTGTTACCC+AGG - chr3_2:73184346-73184365 None:intergenic 40.0%
ACCATCTCCAATCATAGTTC+TGG - chr3_2:73184701-73184720 None:intergenic 40.0%
! TGATTGCACTGCATGTTTTG+AGG + chr3_2:73184977-73184996 Msa0423360:CDS 40.0%
!! GATTGCACTGCATGTTTTGA+GGG + chr3_2:73184978-73184997 Msa0423360:CDS 40.0%
AACAGAATGTGGTGGTTGTT+TGG + chr3_2:73185016-73185035 Msa0423360:CDS 40.0%
ACAGAATGTGGTGGTTGTTT+GGG + chr3_2:73185017-73185036 Msa0423360:CDS 40.0%
GTCACATGCATTGTTCTGTA+TGG + chr3_2:73185531-73185550 Msa0423360:intron 40.0%
CACATGCATTGTTCTGTATG+GGG + chr3_2:73185533-73185552 Msa0423360:intron 40.0%
CAGATGGGACAGAATTGTTT+CGG - chr3_2:73185723-73185742 None:intergenic 40.0%
AACTTGCATATGCAGCAGAT+GGG - chr3_2:73185738-73185757 None:intergenic 40.0%
AAACTTGCATATGCAGCAGA+TGG - chr3_2:73185739-73185758 None:intergenic 40.0%
TGTCACCAAGGATCAACTTT+GGG - chr3_2:73185776-73185795 None:intergenic 40.0%
ATGTCACCAAGGATCAACTT+TGG - chr3_2:73185777-73185796 None:intergenic 40.0%
GGAAGAAATGGAAGAGCAAT+AGG - chr3_2:73185830-73185849 None:intergenic 40.0%
TTGAACATGCTCAATTGGGA+GGG - chr3_2:73186076-73186095 None:intergenic 40.0%
CAGCTTACGAAAACAAAGGT+AGG - chr3_2:73186182-73186201 None:intergenic 40.0%
TGAAGAAAATAACAGTGGCC+TGG - chr3_2:73186426-73186445 None:intergenic 40.0%
AGATAGGTAGAGGTAGAAGG+AGG + chr3_2:73181186-73181205 Msa0423360:five_prime_UTR 45.0%
TAGAGGTAGAAGGAGGAAGA+AGG + chr3_2:73181193-73181212 Msa0423360:five_prime_UTR 45.0%
CATTGAAATTGAGCGGAGGA+GGG - chr3_2:73181294-73181313 None:intergenic 45.0%
GATCGGCCATTGAAATTGAG+CGG - chr3_2:73181301-73181320 None:intergenic 45.0%
GGTGTCTGATTCTGAGTGAT+CGG - chr3_2:73181318-73181337 None:intergenic 45.0%
! AATCCGGCACTGGATTTGTT+CGG - chr3_2:73181405-73181424 None:intergenic 45.0%
CGGATTTGTCTCGAAACTGA+TGG + chr3_2:73181419-73181438 Msa0423360:CDS 45.0%
!! TTCAGGTATGGCTTTGTGAG+AGG + chr3_2:73181819-73181838 Msa0423360:intron 45.0%
!! TCAGGTATGGCTTTGTGAGA+GGG + chr3_2:73181820-73181839 Msa0423360:intron 45.0%
TTTGTGAGAGGGTGAAGTGA+CGG + chr3_2:73181831-73181850 Msa0423360:intron 45.0%
ACATTTACTGACGTACCCCA+GGG - chr3_2:73181990-73182009 None:intergenic 45.0%
TACATTTACTGACGTACCCC+AGG - chr3_2:73181991-73182010 None:intergenic 45.0%
AGTATGTGTTGAGTGGTGCT+TGG + chr3_2:73182105-73182124 Msa0423360:intron 45.0%
GTATGTGTTGAGTGGTGCTT+GGG + chr3_2:73182106-73182125 Msa0423360:intron 45.0%
ACCTCCCTGTAAACCGAAAT+TGG + chr3_2:73182277-73182296 Msa0423360:intron 45.0%
! CGAAATTGGCTCAAACCACA+AGG + chr3_2:73182291-73182310 Msa0423360:intron 45.0%
ATATAGGACACCAACACCGA+TGG + chr3_2:73182471-73182490 Msa0423360:intron 45.0%
GACAGTTGTCTGACGAGTTT+CGG + chr3_2:73182749-73182768 Msa0423360:intron 45.0%
CGATATATCATGCACAGCTC+TGG - chr3_2:73182795-73182814 None:intergenic 45.0%
TTACTAGGAACTAGGAAGGG+TGG + chr3_2:73183076-73183095 Msa0423360:intron 45.0%
! CACTTGTTGACCACTAAGCA+AGG - chr3_2:73183137-73183156 None:intergenic 45.0%
! ACGGGCTAATACACATCGAT+TGG - chr3_2:73183235-73183254 None:intergenic 45.0%
GTGCCTATCTCTGTCCTAAA+TGG - chr3_2:73183375-73183394 None:intergenic 45.0%
GCTCTCCAAACGAATTGTAG+AGG + chr3_2:73183431-73183450 Msa0423360:intron 45.0%
CAAATGATATGGAGCCTTGC+AGG - chr3_2:73183720-73183739 None:intergenic 45.0%
GTGTTCATGTTGCTGCTGAT+AGG + chr3_2:73183741-73183760 Msa0423360:CDS 45.0%
TATGTAGATGGCCAGATGGA+TGG - chr3_2:73183854-73183873 None:intergenic 45.0%
TGTCTTTGTTGCTGTCAACC+TGG + chr3_2:73184325-73184344 Msa0423360:CDS 45.0%
GTCTTTGTTGCTGTCAACCT+GGG + chr3_2:73184326-73184345 Msa0423360:CDS 45.0%
ATAACGACGCTTCAAGCAGA+TGG - chr3_2:73184419-73184438 None:intergenic 45.0%
GTGTAGTGTACGCTAAAACC+TGG - chr3_2:73184483-73184502 None:intergenic 45.0%
GCCAGAACTATGATTGGAGA+TGG + chr3_2:73184697-73184716 Msa0423360:intron 45.0%
! CAGTGTATTGGTGGCAACTA+TGG + chr3_2:73185124-73185143 Msa0423360:CDS 45.0%
! TGTATTGGTGGCAACTATGG+TGG + chr3_2:73185127-73185146 Msa0423360:CDS 45.0%
! GTATTGGTGGCAACTATGGT+GGG + chr3_2:73185128-73185147 Msa0423360:CDS 45.0%
TCAGCTACTAGCGTAACTCT+AGG + chr3_2:73185509-73185528 Msa0423360:intron 45.0%
GGACGAAATGAGGTACGAAT+GGG - chr3_2:73185673-73185692 None:intergenic 45.0%
GAAATTTGGGGGACGAAATG+AGG - chr3_2:73185683-73185702 None:intergenic 45.0%
! CAAGGATCAACTTTGGGAGT+TGG - chr3_2:73185770-73185789 None:intergenic 45.0%
! CAACTCCCAAAGTTGATCCT+TGG + chr3_2:73185768-73185787 Msa0423360:intron 45.0%
TGCTCTTCCATTTCTTCCTG+TGG + chr3_2:73185832-73185851 Msa0423360:intron 45.0%
GTTGAACATGCTCAATTGGG+AGG - chr3_2:73186077-73186096 None:intergenic 45.0%
CTGGCAGCACCAATATATCA+AGG - chr3_2:73186407-73186426 None:intergenic 45.0%
!! CTTGATATATTGGTGCTGCC+AGG + chr3_2:73186405-73186424 Msa0423360:three_prime_UTR 45.0%
!! ATTAACTATATTATATATAA+TGG + chr3_2:73184452-73184471 Msa0423360:intron 5.0%
CCATTGAAATTGAGCGGAGG+AGG - chr3_2:73181295-73181314 None:intergenic 50.0%
CCTCCTCCGCTCAATTTCAA+TGG + chr3_2:73181292-73181311 Msa0423360:exon 50.0%
CTTCCGAACAAATCCAGTGC+CGG + chr3_2:73181399-73181418 Msa0423360:CDS 50.0%
TTTCGAGACAAATCCGGCAC+TGG - chr3_2:73181415-73181434 None:intergenic 50.0%
AGTGACGGTGAAGTAGGTTC+AGG + chr3_2:73181846-73181865 Msa0423360:intron 50.0%
GTGACGGTGAAGTAGGTTCA+GGG + chr3_2:73181847-73181866 Msa0423360:intron 50.0%
TGACGGTGAAGTAGGTTCAG+GGG + chr3_2:73181848-73181867 Msa0423360:intron 50.0%
AAGGAGGGACCAACGGTTAT+CGG + chr3_2:73181940-73181959 Msa0423360:intron 50.0%
AGTCCAGCAGTTCTTAACCC+TGG + chr3_2:73181970-73181989 Msa0423360:intron 50.0%
GTCCAGCAGTTCTTAACCCT+GGG + chr3_2:73181971-73181990 Msa0423360:intron 50.0%
TCCAGCAGTTCTTAACCCTG+GGG + chr3_2:73181972-73181991 Msa0423360:intron 50.0%
GCCAATTTCGGTTTACAGGG+AGG - chr3_2:73182281-73182300 None:intergenic 50.0%
TATGGTACTTTCGCCCCTTG+TGG - chr3_2:73182309-73182328 None:intergenic 50.0%
GTCTGACGAGTTTCGGACAT+CGG + chr3_2:73182756-73182775 Msa0423360:intron 50.0%
TCTGACGAGTTTCGGACATC+GGG + chr3_2:73182757-73182776 Msa0423360:intron 50.0%
GGATCATTGGCGATCTGTCA+AGG + chr3_2:73182915-73182934 Msa0423360:CDS 50.0%
TGACTGGAAGCCTTGCTTAG+TGG + chr3_2:73183124-73183143 Msa0423360:intron 50.0%
!! TTTCTGGCTGTCCAGCTTGT+AGG + chr3_2:73183818-73183837 Msa0423360:intron 50.0%
CTTGGGGCAAGATGGAGAAA+AGG - chr3_2:73184120-73184139 None:intergenic 50.0%
ACTCTGAACTTGGGGCAAGA+TGG - chr3_2:73184128-73184147 None:intergenic 50.0%
! TTTGCCTTGCTTGGCCTTTC+TGG + chr3_2:73184238-73184257 Msa0423360:CDS 50.0%
! TTGCCTTGCTTGGCCTTTCT+GGG + chr3_2:73184239-73184258 Msa0423360:CDS 50.0%
!! TGTGCTGACTGTCATTTGCC+AGG + chr3_2:73184936-73184955 Msa0423360:CDS 50.0%
! TGCCAGGCACTCTTTGTTTG+TGG + chr3_2:73184952-73184971 Msa0423360:CDS 50.0%
!! GTCCACAAACAAAGAGTGCC+TGG - chr3_2:73184957-73184976 None:intergenic 50.0%
!!! ACTGCATGTTTTGAGGGCTG+TGG + chr3_2:73184984-73185003 Msa0423360:CDS 50.0%
!! TTTTGAGGGCTGTGGAACCA+TGG + chr3_2:73184992-73185011 Msa0423360:CDS 50.0%
GGAACCATGGCAACAGAATG+TGG + chr3_2:73185005-73185024 Msa0423360:CDS 50.0%
ACCATGGCAACAGAATGTGG+TGG + chr3_2:73185008-73185027 Msa0423360:CDS 50.0%
ACCACCACATTCTGTTGCCA+TGG - chr3_2:73185012-73185031 None:intergenic 50.0%
GAATGTGGTGGTTGTTTGGG+AGG + chr3_2:73185020-73185039 Msa0423360:CDS 50.0%
!! TGGCAACTATGGTGGGTCAA+CGG + chr3_2:73185135-73185154 Msa0423360:CDS 50.0%
!! CTATGGTGGGTCAACGGATA+TGG + chr3_2:73185141-73185160 Msa0423360:CDS 50.0%
TAGGAGTCAGCAGAACACTC+AGG - chr3_2:73185633-73185652 None:intergenic 50.0%
!! GAATGGGCTGAGTGAGAGTT+TGG - chr3_2:73185657-73185676 None:intergenic 50.0%
GGGACGAAATGAGGTACGAA+TGG - chr3_2:73185674-73185693 None:intergenic 50.0%
ACACTCACGTACTCATGAGG+GGG - chr3_2:73185800-73185819 None:intergenic 50.0%
CACACTCACGTACTCATGAG+GGG - chr3_2:73185801-73185820 None:intergenic 50.0%
GCACACTCACGTACTCATGA+GGG - chr3_2:73185802-73185821 None:intergenic 50.0%
TGCACACTCACGTACTCATG+AGG - chr3_2:73185803-73185822 None:intergenic 50.0%
GTAGGGCGAGTCTACTTCTA+CGG - chr3_2:73186164-73186183 None:intergenic 50.0%
CGGCCATTGAAATTGAGCGG+AGG - chr3_2:73181298-73181317 None:intergenic 55.0%
TCGATCGAGGAAGGATCGAC+GGG - chr3_2:73181365-73181384 None:intergenic 55.0%
GTCGATCGAGGAAGGATCGA+CGG - chr3_2:73181366-73181385 None:intergenic 55.0%
! CGGCACTGGATTTGTTCGGA+AGG - chr3_2:73181401-73181420 None:intergenic 55.0%
GGGTGAAGTGACGGTGAAGT+AGG + chr3_2:73181840-73181859 Msa0423360:intron 55.0%
GACGGTGAAGTAGGTTCAGG+GGG + chr3_2:73181849-73181868 Msa0423360:intron 55.0%
TAGTCGCAAGGAGGGACCAA+CGG + chr3_2:73181933-73181952 Msa0423360:intron 55.0%
ACCCCAGGGTTAAGAACTGC+TGG - chr3_2:73181976-73181995 None:intergenic 55.0%
TGCTCACTGCACTACCTGCA+AGG + chr3_2:73183703-73183722 Msa0423360:CDS 55.0%
!! GTGGTTGTTTGGGAGGTGCT+GGG + chr3_2:73185027-73185046 Msa0423360:CDS 55.0%
!! TGGTTGTTTGGGAGGTGCTG+GGG + chr3_2:73185028-73185047 Msa0423360:CDS 55.0%
GGCTGAGTGAGAGTTTGGCT+AGG - chr3_2:73185652-73185671 None:intergenic 55.0%
TCATGAGGGGGATGTCACCA+AGG - chr3_2:73185788-73185807 None:intergenic 55.0%
ACATGCTCAATTGGGAGGGC+TGG - chr3_2:73186072-73186091 None:intergenic 55.0%
AAGAGGTGGGACGAGAGGTG+AGG - chr3_2:73181339-73181358 None:intergenic 60.0%
GATCGACGGGAGGAAGAGGT+GGG - chr3_2:73181352-73181371 None:intergenic 60.0%
GAAGGATCGACGGGAGGAAG+AGG - chr3_2:73181356-73181375 None:intergenic 60.0%
ATCGAGGAAGGATCGACGGG+AGG - chr3_2:73181362-73181381 None:intergenic 60.0%
GCTTCGAGGTCGATCGAGGA+AGG - chr3_2:73181374-73181393 None:intergenic 60.0%
TCCTCGATCGACCTCGAAGC+TGG + chr3_2:73181374-73181393 Msa0423360:CDS 60.0%
ACCAGCTTCGAGGTCGATCG+AGG - chr3_2:73181378-73181397 None:intergenic 60.0%
GTTCGGAAGGACCAGCTTCG+AGG - chr3_2:73181388-73181407 None:intergenic 60.0%
GCACCCAGAAAGGCCAAGCA+AGG - chr3_2:73184245-73184264 None:intergenic 60.0%
! GGTGGTTGTTTGGGAGGTGC+TGG + chr3_2:73185026-73185045 Msa0423360:CDS 60.0%
TGCTCAATTGGGAGGGCTGG+AGG - chr3_2:73186069-73186088 None:intergenic 60.0%
GGAGGAAGAGGTGGGACGAG+AGG - chr3_2:73181344-73181363 None:intergenic 65.0%
GGATCGACGGGAGGAAGAGG+TGG - chr3_2:73181353-73181372 None:intergenic 65.0%
!! TTGGGAGGTGCTGGGGAAGC+AGG + chr3_2:73185035-73185054 Msa0423360:CDS 65.0%
!! TGGGAGGTGCTGGGGAAGCA+GGG + chr3_2:73185036-73185055 Msa0423360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73181051 73186552 73181051 ID=Msa0423360;Name=Msa0423360
chr3_2 mRNA 73181051 73186552 73181051 ID=Msa0423360-mRNA-1;Parent=Msa0423360;Name=Msa0423360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=239|1|1|1|0.85|0.75|8|430|325
chr3_2 exon 73181051 73181133 73181051 ID=Msa0423360-mRNA-1:exon:18177;Parent=Msa0423360-mRNA-1
chr3_2 exon 73181155 73181440 73181155 ID=Msa0423360-mRNA-1:exon:18178;Parent=Msa0423360-mRNA-1
chr3_2 exon 73182851 73182936 73182851 ID=Msa0423360-mRNA-1:exon:18179;Parent=Msa0423360-mRNA-1
chr3_2 exon 73183689 73183835 73183689 ID=Msa0423360-mRNA-1:exon:18180;Parent=Msa0423360-mRNA-1
chr3_2 exon 73183943 73184051 73183943 ID=Msa0423360-mRNA-1:exon:18181;Parent=Msa0423360-mRNA-1
chr3_2 exon 73184224 73184347 73184224 ID=Msa0423360-mRNA-1:exon:18182;Parent=Msa0423360-mRNA-1
chr3_2 exon 73184932 73185205 73184932 ID=Msa0423360-mRNA-1:exon:18183;Parent=Msa0423360-mRNA-1
chr3_2 exon 73186015 73186552 73186015 ID=Msa0423360-mRNA-1:exon:18184;Parent=Msa0423360-mRNA-1
chr3_2 five_prime_UTR 73181051 73181133 73181051 ID=Msa0423360-mRNA-1:five_prime_utr;Parent=Msa0423360-mRNA-1
chr3_2 five_prime_UTR 73181155 73181310 73181155 ID=Msa0423360-mRNA-1:five_prime_utr;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73181311 73181440 73181311 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73182851 73182936 73182851 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73183689 73183835 73183689 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73183943 73184051 73183943 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73184224 73184347 73184224 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73184932 73185205 73184932 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 CDS 73186015 73186122 73186015 ID=Msa0423360-mRNA-1:cds;Parent=Msa0423360-mRNA-1
chr3_2 three_prime_UTR 73186123 73186552 73186123 ID=Msa0423360-mRNA-1:three_prime_utr;Parent=Msa0423360-mRNA-1
Gene Sequence

>Msa0423360

ATGGCCGATCACTCAGAATCAGACACCTCACCTCTCGTCCCACCTCTTCCTCCCGTCGATCCTTCCTCGATCGACCTCGAAGCTGGTCCTTCCGAACAAATCCAGTGCCGGATTTGTCTCGAAACTGATGGTAGGGATTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTCAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATTTTGTCTATTTTTCTGGCTGTCCAGCTTATTATTACCTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAAAATTGGCTTCGTATTCTCTGGGGTTTTGATAGTGCACTGAGCTTCTATTATATATGCGGAGCCCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGCACTCTTTGTTTGTGGACTGATTGCACTGCATGTTTTGAGGGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACAGTAATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTGGGTCAACGGATATGGCAACGTCACTATCACATACTTGCTAAAAGGATGTTAACAAAGGAGTATGTTGTTGAAGATGTCGATGGAGAGATGACAGGGTCTGATTGGTCTCCTCCAGCCCTCCCAATTGAGCATGTTCAACAATTGAAAACATTGGGCCTCTTATGA

Protein sequence

>Msa0423360

MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLIDGYQQNWLRILWGFDSALSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCLWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPIEHVQQLKTLGLL*