AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094420 MtrunA17_Chr8g0364471 65.775 374 125 2 1 374 1 371 0.0 514
Msa0094420 MtrunA17_Chr7g0235951 63.369 374 134 2 1 374 1 371 5.88e-178 502
Msa0094420 MtrunA17_Chr8g0335411 65.241 374 127 2 1 374 1 371 1.03e-175 496
Msa0094420 MtrunA17_Chr7g0236011 64.706 374 129 2 1 374 1 371 2.49e-170 483
Msa0094420 MtrunA17_Chr7g0247991 64.171 374 131 2 1 374 1 371 1.54e-168 478
Msa0094420 MtrunA17_Chr1g0187821 63.807 373 123 7 8 374 2 368 4.33e-167 474
Msa0094420 MtrunA17_Chr4g0066991 65.067 375 106 4 1 374 1 351 1.08e-165 470
Msa0094420 MtrunA17_Chr1g0187811 59.103 379 139 7 8 374 117 491 2.00e-157 454
Msa0094420 MtrunA17_Chr2g0311701 58.355 377 150 5 1 374 1 373 3.82e-157 449
Msa0094420 MtrunA17_Chr1g0187831 58.378 370 143 6 11 374 8 372 6.70e-155 444
Msa0094420 MtrunA17_Chr4g0055591 58.333 360 135 5 19 374 11 359 2.18e-150 431
Msa0094420 MtrunA17_Chr2g0311681 58.726 361 142 5 17 374 11 367 6.46e-150 431
Msa0094420 MtrunA17_Chr2g0311711 58.310 355 141 5 12 364 10 359 8.03e-148 425
Msa0094420 MtrunA17_Chr2g0311691 57.692 364 147 5 17 377 11 370 6.81e-147 423
Msa0094420 MtrunA17_Chr8g0354241 53.784 370 163 5 8 374 8 372 1.47e-144 417
Msa0094420 MtrunA17_Chr4g0011311 67.931 290 91 1 1 290 1 288 3.39e-143 411
Msa0094420 MtrunA17_Chr8g0354261 53.243 370 165 5 8 374 8 372 1.32e-142 412
Msa0094420 MtrunA17_Chr8g0336851 53.239 355 149 5 22 371 17 359 2.05e-138 401
Msa0094420 MtrunA17_Chr2g0311741 58.559 333 127 5 44 374 2 325 3.91e-137 396
Msa0094420 MtrunA17_Chr8g0336751 53.333 375 168 4 1 374 27 395 5.00e-137 399
Msa0094420 MtrunA17_Chr7g0235981 55.153 359 126 4 16 374 2 325 5.15e-136 394
Msa0094420 MtrunA17_Chr8g0336761 53.279 366 161 6 6 371 4 359 7.84e-136 394
Msa0094420 MtrunA17_Chr8g0348081 53.714 350 155 5 22 371 17 359 2.96e-135 393
Msa0094420 MtrunA17_Chr8g0336861 52.066 363 162 7 14 374 12 364 3.25e-133 388
Msa0094420 MtrunA17_Chr8g0336631 52.861 367 162 7 6 371 4 360 1.62e-132 386
Msa0094420 MtrunA17_Chr8g0362741 65.862 290 82 3 1 290 1 273 1.18e-130 378
Msa0094420 MtrunA17_Chr2g0311831 52.925 359 160 5 18 374 18 369 6.95e-130 380
Msa0094420 MtrunA17_Chr1g0167911 51.412 354 161 6 18 369 5 349 1.30e-129 378
Msa0094420 MtrunA17_Chr8g0336781 51.685 356 154 6 22 371 52 395 5.82e-129 378
Msa0094420 MtrunA17_Chr2g0311761 51.459 377 173 6 1 374 1 370 1.56e-128 376
Msa0094420 MtrunA17_Chr4g0066121 53.274 336 149 6 22 356 17 345 1.25e-125 369
Msa0094420 MtrunA17_Chr2g0311921 50.546 366 159 7 18 374 4 356 6.55e-125 366
Msa0094420 MtrunA17_Chr1g0167951 50.833 360 169 5 15 374 2 353 3.34e-124 364
Msa0094420 MtrunA17_Chr6g0472861 48.525 373 174 5 12 374 7 371 9.28e-122 359
Msa0094420 MtrunA17_Chr7g0225881 48.098 368 180 4 12 374 7 368 7.48e-119 352
Msa0094420 MtrunA17_Chr1g0167961 49.577 355 171 5 18 371 20 367 7.01e-118 349
Msa0094420 MtrunA17_Chr2g0311861 48.925 372 149 7 11 374 7 345 2.16e-114 339
Msa0094420 MtrunA17_Chr1g0184241 46.703 364 182 4 12 374 13 365 1.68e-109 327
Msa0094420 MtrunA17_Chr1g0167931 46.045 354 146 4 18 371 5 313 2.13e-105 315
Msa0094420 MtrunA17_Chr7g0266651 44.538 357 189 5 15 369 6 355 1.64e-98 299
Msa0094420 MtrunA17_Chr1g0161081 43.380 355 189 3 17 369 21 365 8.05e-93 285
Msa0094420 MtrunA17_Chr1g0161111 42.493 353 191 3 17 367 80 422 7.62e-90 279
Msa0094420 MtrunA17_Chr1g0161041 41.972 355 194 3 17 369 44 388 9.47e-88 273
Msa0094420 MtrunA17_Chr8g0336831 49.145 234 105 4 22 249 17 242 2.43e-76 238
Msa0094420 MtrunA17_Chr8g0364161 62.983 181 65 1 1 181 1 179 3.29e-76 236
Msa0094420 MtrunA17_Chr8g0336871 56.425 179 68 3 193 371 1 169 1.05e-61 198
Msa0094420 MtrunA17_Chr8g0336801 58.491 159 62 2 217 375 1 155 6.60e-61 195
Msa0094420 MtrunA17_Chr6g0455481 36.336 333 183 10 42 364 17 330 2.12e-55 187
Msa0094420 MtrunA17_Chr5g0412651 34.641 306 182 7 66 363 37 332 4.11e-54 184
Msa0094420 MtrunA17_Chr7g0235991 53.049 164 75 1 47 210 1 162 6.58e-54 178
Msa0094420 MtrunA17_Chr1g0184111 34.839 310 181 6 64 366 34 329 1.63e-53 182
Msa0094420 MtrunA17_Chr7g0242551 34.626 361 210 10 33 378 15 364 6.99e-53 181
Msa0094420 MtrunA17_Chr1g0184121 36.278 317 167 8 64 366 34 329 9.36e-53 180
Msa0094420 MtrunA17_Chr3g0128001 34.286 315 189 6 66 376 37 337 1.36e-52 179
Msa0094420 MtrunA17_Chr8g0345831 34.768 302 183 4 66 364 41 331 1.85e-52 179
Msa0094420 MtrunA17_Chr4g0006371 34.615 364 203 13 33 372 14 366 4.62e-52 179
Msa0094420 MtrunA17_Chr8g0375571 33.046 348 213 9 32 371 10 345 7.80e-52 178
Msa0094420 MtrunA17_Chr5g0412671 33.758 314 188 8 66 371 37 338 2.30e-51 177
Msa0094420 MtrunA17_Chr3g0109041 32.955 352 211 11 33 372 10 348 3.04e-51 176
Msa0094420 MtrunA17_Chr1g0184101 34.906 318 185 7 64 374 35 337 3.57e-51 176
Msa0094420 MtrunA17_Chr8g0364171 71.560 109 31 0 182 290 18 126 3.82e-51 169
Msa0094420 MtrunA17_Chr4g0045441 34.810 316 173 10 67 360 26 330 4.03e-51 176
Msa0094420 MtrunA17_Chr7g0265221 32.295 353 204 9 28 357 21 361 4.90e-51 177
Msa0094420 MtrunA17_Chr5g0426891 32.628 331 208 7 32 357 3 323 8.18e-51 175
Msa0094420 MtrunA17_Chr1g0179801 31.965 341 205 7 32 357 26 354 3.05e-50 174
Msa0094420 MtrunA17_Chr2g0314391 31.322 348 219 8 32 372 35 369 1.62e-49 172
Msa0094420 MtrunA17_Chr1g0184161 32.407 324 189 7 64 376 35 339 1.97e-49 171
Msa0094420 MtrunA17_Chr8g0336791 44.324 185 89 4 22 200 17 193 3.23e-49 166
Msa0094420 MtrunA17_Chr3g0126741 32.143 336 205 10 31 357 21 342 4.44e-49 171
Msa0094420 MtrunA17_Chr5g0412681 32.704 318 188 7 66 375 32 331 4.64e-49 170
Msa0094420 MtrunA17_Chr5g0421041 31.700 347 215 10 32 372 12 342 1.35e-48 169
Msa0094420 MtrunA17_Chr5g0421011 32.471 348 213 11 32 372 12 344 2.90e-48 169
Msa0094420 MtrunA17_Chr4g0045451 32.508 323 181 10 67 363 26 337 3.00e-48 168
Msa0094420 MtrunA17_Chr5g0437181 33.983 359 206 12 33 376 14 356 5.74e-48 168
Msa0094420 MtrunA17_Chr2g0314381 32.051 312 196 6 63 369 73 373 6.27e-48 169
Msa0094420 MtrunA17_Chr7g0220011 34.810 316 172 11 63 366 35 328 9.43e-48 167
Msa0094420 MtrunA17_Chr1g0162351 32.390 318 182 9 66 360 68 375 9.58e-48 168
Msa0094420 MtrunA17_Chr1g0162321 32.390 318 182 9 66 360 68 375 4.51e-47 166
Msa0094420 MtrunA17_Chr5g0423191 33.746 323 190 10 60 372 36 344 4.62e-47 165
Msa0094420 MtrunA17_Chr5g0420941 31.429 350 218 10 32 374 10 344 5.32e-47 165
Msa0094420 MtrunA17_Chr2g0311631 30.199 351 219 8 32 371 21 356 5.92e-47 165
Msa0094420 MtrunA17_Chr7g0220001 32.899 307 180 9 66 364 40 328 1.21e-46 164
Msa0094420 MtrunA17_Chr5g0420901 30.636 346 220 9 33 372 12 343 2.13e-46 164
Msa0094420 MtrunA17_Chr4g0050031 32.215 298 189 8 64 357 59 347 3.18e-46 164
Msa0094420 MtrunA17_Chr2g0314401 31.728 353 211 13 32 372 16 350 3.88e-46 163
Msa0094420 MtrunA17_Chr8g0375701 32.514 366 213 12 22 372 5 351 4.94e-46 162
Msa0094420 MtrunA17_Chr3g0113641 33.437 323 193 10 64 376 47 357 7.18e-46 162
Msa0094420 MtrunA17_Chr5g0423221 30.226 354 214 13 32 372 36 369 1.18e-45 162
Msa0094420 MtrunA17_Chr8g0375671 28.902 346 230 7 33 372 18 353 1.84e-45 161
Msa0094420 MtrunA17_Chr5g0423201 30.460 348 221 9 32 372 12 345 2.23e-45 161
Msa0094420 MtrunA17_Chr1g0184151 32.063 315 198 6 66 376 37 339 2.24e-45 160
Msa0094420 MtrunA17_Chr5g0421091 30.836 347 219 10 33 372 11 343 4.06e-45 160
Msa0094420 MtrunA17_Chr2g0319491 31.361 338 189 10 49 371 11 320 7.14e-45 159
Msa0094420 MtrunA17_Chr1g0162191 30.267 337 214 9 41 369 20 343 7.67e-45 159
Msa0094420 MtrunA17_Chr1g0162361 31.420 331 187 9 53 360 9 322 7.79e-45 159
Msa0094420 MtrunA17_Chr8g0365241 30.435 345 215 9 32 367 22 350 8.49e-45 159
Msa0094420 MtrunA17_Chr5g0420981 29.825 342 222 8 32 367 17 346 9.83e-45 159
Msa0094420 MtrunA17_Chr7g0265351 31.546 317 192 6 63 372 35 333 1.92e-44 158
Msa0094420 MtrunA17_Chr4g0045431 33.754 317 175 12 67 360 26 330 3.33e-44 157
Msa0094420 MtrunA17_Chr5g0423251 31.054 351 214 11 32 372 12 344 3.60e-44 157
Msa0094420 MtrunA17_Chr4g0045411 31.562 320 189 10 66 365 29 338 3.65e-44 157
Msa0094420 MtrunA17_Chr4g0045471 31.611 329 185 11 61 360 14 331 4.46e-44 157
Msa0094420 MtrunA17_Chr5g0421101 29.944 354 214 11 32 372 12 344 7.37e-44 157
Msa0094420 MtrunA17_Chr8g0375601 29.060 351 225 10 33 372 11 348 7.53e-44 157
Msa0094420 MtrunA17_Chr3g0093761 31.624 351 212 9 32 372 17 349 1.20e-43 156
Msa0094420 MtrunA17_Chr5g0420951 28.857 350 225 9 32 372 17 351 1.29e-43 156
Msa0094420 MtrunA17_Chr5g0439011 33.333 306 170 12 65 357 3 287 1.11e-42 153
Msa0094420 MtrunA17_Chr7g0239101 28.286 350 218 11 33 369 20 349 1.22e-42 154
Msa0094420 MtrunA17_Chr3g0121141 32.343 303 173 12 66 358 3 283 2.96e-42 151
Msa0094420 MtrunA17_Chr3g0093741 29.261 352 220 8 32 372 17 350 3.47e-42 152
Msa0094420 MtrunA17_Chr1g0167921 53.435 131 53 2 174 296 39 169 6.17e-42 146
Msa0094420 MtrunA17_Chr7g0239111 31.494 308 181 12 67 363 55 343 8.81e-42 151
Msa0094420 MtrunA17_Chr2g0332191 33.036 336 180 12 67 382 52 362 9.94e-42 152
Msa0094420 MtrunA17_Chr3g0102041 32.982 285 181 6 48 326 20 300 1.43e-41 150
Msa0094420 MtrunA17_Chr7g0239821 29.787 329 201 12 66 385 63 370 1.70e-41 151
Msa0094420 MtrunA17_Chr2g0289341 31.818 308 182 11 66 362 3 293 2.11e-41 149
Msa0094420 MtrunA17_Chr3g0093751 29.714 350 221 7 32 372 17 350 2.44e-41 150
Msa0094420 MtrunA17_Chr3g0125201 33.840 263 155 9 65 319 1 252 4.09e-41 148
Msa0094420 MtrunA17_Chr2g0296371 30.448 335 207 9 33 356 17 336 2.19e-40 148
Msa0094420 MtrunA17_Chr5g0398291 29.330 358 225 10 33 373 8 354 3.91e-40 147
Msa0094420 MtrunA17_Chr5g0423211 29.714 350 222 11 32 372 12 346 6.58e-40 146
Msa0094420 MtrunA17_Chr8g0371921 31.908 304 191 7 48 342 20 316 2.23e-39 145
Msa0094420 MtrunA17_Chr7g0239121 31.013 316 185 12 67 369 51 346 2.46e-39 145
Msa0094420 MtrunA17_Chr5g0405411 32.792 308 183 9 48 342 20 316 2.62e-39 145
Msa0094420 MtrunA17_Chr8g0371931 30.921 304 194 7 48 342 20 316 5.78e-39 144
Msa0094420 MtrunA17_Chr3g0145171 30.909 330 204 9 49 372 39 350 7.66e-39 143
Msa0094420 MtrunA17_Chr3g0087031 30.448 335 209 11 43 368 34 353 1.01e-38 143
Msa0094420 MtrunA17_Chr2g0311751 49.645 141 67 2 44 182 2 140 1.26e-38 137
Msa0094420 MtrunA17_Chr4g0045461 32.615 325 183 10 67 366 26 339 1.73e-38 143
Msa0094420 MtrunA17_Chr8g0375681 32.364 275 173 6 103 372 15 281 8.79e-38 139
Msa0094420 MtrunA17_Chr7g0250511 28.399 331 217 8 35 358 16 333 9.21e-38 140
Msa0094420 MtrunA17_Chr8g0370711 31.511 311 189 9 49 352 39 332 1.89e-37 140
Msa0094420 MtrunA17_Chr1g0168001 40.351 171 93 4 18 182 5 172 4.74e-37 133
Msa0094420 MtrunA17_Chr8g0370721 30.631 333 205 12 49 374 39 352 6.97e-37 138
Msa0094420 MtrunA17_Chr7g0232161 31.690 284 168 9 33 303 25 295 8.16e-36 134
Msa0094420 MtrunA17_Chr3g0114861 29.706 340 213 7 33 363 6 328 1.32e-35 134
Msa0094420 MtrunA17_Chr5g0420721 35.160 219 130 5 159 372 35 246 4.12e-35 131
Msa0094420 MtrunA17_Chr6g0474391 27.778 324 205 6 48 351 36 350 1.84e-34 132
Msa0094420 MtrunA17_Chr4g0064781 29.747 316 195 10 65 372 48 344 2.63e-34 131
Msa0094420 MtrunA17_Chr1g0204181 27.353 340 219 6 54 378 46 372 9.12e-34 130
Msa0094420 MtrunA17_Chr6g0488511 30.303 264 163 8 65 319 1 252 8.27e-33 125
Msa0094420 MtrunA17_Chr7g0239091 28.302 318 203 9 44 357 136 432 1.93e-32 128
Msa0094420 MtrunA17_Chr3g0126761 40.449 178 96 5 182 357 44 213 2.16e-32 123
Msa0094420 MtrunA17_Chr5g0424201 27.434 339 214 10 38 363 14 333 3.54e-32 125
Msa0094420 MtrunA17_Chr3g0145181 29.866 298 195 6 61 352 43 332 3.64e-32 125
Msa0094420 MtrunA17_Chr1g0191201 28.395 324 203 9 57 365 42 351 8.00e-32 125
Msa0094420 MtrunA17_Chr3g0145201 29.870 308 202 6 51 352 668 967 8.70e-32 129
Msa0094420 MtrunA17_Chr8g0351101 29.730 333 209 10 28 348 17 336 1.63e-31 124
Msa0094420 MtrunA17_Chr3g0105281 30.522 249 144 7 67 303 34 265 5.04e-30 119
Msa0094420 MtrunA17_Chr5g0424211 26.994 326 200 10 38 346 12 316 6.65e-30 119
Msa0094420 MtrunA17_Chr7g0239071 28.669 293 184 10 91 372 19 297 1.75e-28 114
Msa0094420 MtrunA17_Chr2g0314371 30.153 262 152 6 63 297 48 305 3.40e-28 114
Msa0094420 MtrunA17_Chr3g0125421 28.065 310 193 9 65 358 34 329 6.92e-28 113
Msa0094420 MtrunA17_Chr5g0394071 36.416 173 97 2 184 356 4 163 1.03e-27 108
Msa0094420 MtrunA17_Chr3g0092531 28.344 314 201 9 67 372 6 303 1.42e-27 112
Msa0094420 MtrunA17_Chr4g0068891 30.065 306 174 11 67 356 20 301 1.65e-27 112
Msa0094420 MtrunA17_Chr3g0114871 27.636 275 171 7 44 306 18 276 4.85e-27 109
Msa0094420 MtrunA17_Chr1g0161101 41.176 170 86 2 167 336 346 501 1.13e-26 112
Msa0094420 MtrunA17_Chr3g0130391 28.662 314 186 11 59 351 56 352 1.65e-26 110
Msa0094420 MtrunA17_Chr1g0148771 28.105 306 184 8 67 362 63 342 3.41e-26 108
Msa0094420 MtrunA17_Chr5g0407731 27.907 301 178 10 67 356 33 305 1.36e-25 106
Msa0094420 MtrunA17_Chr2g0285931 27.476 313 177 11 67 356 28 313 2.56e-25 105
Msa0094420 MtrunA17_Chr8g0389941 28.529 340 184 13 56 365 30 340 2.62e-25 106
Msa0094420 MtrunA17_Chr8g0384461 25.737 373 235 11 28 378 6 358 3.38e-25 106
Msa0094420 MtrunA17_Chr6g0486831 27.744 328 188 12 69 365 20 329 3.72e-25 105
Msa0094420 MtrunA17_Chr4g0055911 26.706 337 202 11 59 372 1 315 5.59e-25 104
Msa0094420 MtrunA17_Chr5g0407781 27.726 321 182 11 66 369 4 291 7.88e-25 103
Msa0094420 MtrunA17_Chr7g0252371 69.048 84 25 1 185 267 1 84 2.57e-24 97.1
Msa0094420 MtrunA17_Chr8g0384481 28.779 344 196 13 56 374 46 365 2.64e-24 103
Msa0094420 MtrunA17_Chr4g0037611 35.542 166 93 4 192 356 1 153 5.78e-24 98.6
Msa0094420 MtrunA17_Chr4g0075471 39.535 129 72 4 230 357 32 155 1.56e-23 96.7
Msa0094420 MtrunA17_Chr7g0233661 38.194 144 88 1 207 350 1 143 3.47e-23 95.5
Msa0094420 MtrunA17_Chr5g0420881 34.247 146 88 4 228 372 2 140 5.53e-23 94.7
Msa0094420 MtrunA17_Chr2g0319521 38.182 110 68 0 181 290 15 124 2.98e-21 89.4
Msa0094420 MtrunA17_Chr1g0158021 27.753 227 147 9 63 282 45 261 5.15e-21 92.0
Msa0094420 MtrunA17_Chr4g0055871 24.847 326 197 12 59 362 1 300 5.91e-21 93.2
Msa0094420 MtrunA17_Chr1g0170631 31.111 180 112 6 182 358 3 173 6.63e-21 90.5
Msa0094420 MtrunA17_Chr1g0194321 25.852 352 180 13 65 374 18 330 1.24e-20 92.8
Msa0094420 MtrunA17_Chr2g0313111 26.059 307 193 11 66 361 27 310 1.46e-20 92.4
Msa0094420 MtrunA17_Chr1g0158011 27.347 245 162 7 108 348 1 233 2.34e-20 90.5
Msa0094420 MtrunA17_Chr8g0358941 26.761 284 183 10 94 361 44 318 2.64e-20 91.7
Msa0094420 MtrunA17_Chr8g0348951 28.571 315 183 14 66 360 4 296 3.06e-20 91.3
Msa0094420 MtrunA17_Chr8g0336841 54.878 82 33 2 290 371 9 86 4.51e-20 84.7
Msa0094420 MtrunA17_Chr4g0064771 32.787 183 112 6 187 367 31 204 6.01e-20 87.8
Msa0094420 MtrunA17_Chr3g0092581 32.778 180 111 6 195 372 4 175 1.25e-19 86.3
Msa0094420 MtrunA17_Chr4g0053251 28.136 295 159 12 66 324 7 284 2.88e-19 88.6
Msa0094420 MtrunA17_Chr2g0311611 47.143 70 30 1 228 290 2 71 5.33e-18 78.2
Msa0094420 MtrunA17_Chr7g0219991 38.889 108 62 3 183 288 249 354 6.29e-17 82.0
Msa0094420 MtrunA17_Chr7g0247741 26.814 317 190 11 61 360 5 296 1.37e-16 80.5
Msa0094420 MtrunA17_Chr4g0052251 23.512 336 208 11 47 362 13 319 1.94e-16 80.1
Msa0094420 MtrunA17_Chr2g0293931 28.708 209 128 8 185 381 10 209 3.14e-16 77.4
Msa0094420 MtrunA17_Chr8g0375581 38.372 86 52 1 203 287 1 86 1.10e-14 69.3
Msa0094420 MtrunA17_Chr2g0311821 46.875 96 43 3 71 164 11 100 3.23e-14 69.3
Msa0094420 MtrunA17_Chr4g0004071 22.050 322 227 9 67 380 9 314 8.33e-14 72.0
Msa0094420 MtrunA17_Chr8g0375661 26.852 108 76 2 32 138 17 122 2.28e-11 62.4
Msa0094420 MtrunA17_Chr5g0420891 28.387 155 99 5 33 182 12 159 2.73e-11 62.0
Msa0094420 MtrunA17_Chr8g0375641 25.166 151 108 4 32 180 17 164 8.73e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094420 AT5G59540.1 53.168 363 160 6 13 371 5 361 3.99e-139 403
Msa0094420 AT5G59530.1 53.951 367 156 8 13 374 4 362 1.03e-136 397
Msa0094420 AT1G04350.1 52.514 358 159 4 17 371 6 355 6.81e-136 395
Msa0094420 AT1G06620.1 52.793 358 162 4 15 371 9 360 1.13e-135 394
Msa0094420 AT2G30840.1 52.893 363 165 2 14 374 2 360 8.75e-131 382
Msa0094420 AT1G06650.2 49.591 367 173 4 14 374 7 367 1.17e-128 377
Msa0094420 AT1G06640.1 50.546 366 169 4 16 375 9 368 3.10e-126 370
Msa0094420 AT5G43450.1 50.000 362 170 4 13 371 4 357 1.61e-125 369
Msa0094420 AT2G30840.3 51.791 363 163 3 14 374 2 354 5.90e-125 367
Msa0094420 AT1G03410.2 50.712 351 163 6 16 362 3 347 3.69e-124 365
Msa0094420 AT1G03410.1 50.712 351 163 6 16 362 40 384 6.81e-124 365
Msa0094420 AT2G25450.1 49.020 357 177 3 16 372 4 355 1.47e-122 361
Msa0094420 AT2G30830.1 50.139 361 170 5 16 374 4 356 3.43e-122 360
Msa0094420 AT1G04380.1 52.108 332 145 5 42 371 21 340 5.86e-120 353
Msa0094420 AT1G03400.1 49.854 343 157 4 16 356 3 332 2.37e-119 352
Msa0094420 AT5G43440.1 48.476 361 174 6 19 374 10 363 1.11e-118 351
Msa0094420 AT1G06645.1 47.382 382 181 7 2 374 7 377 3.38e-118 350
Msa0094420 AT3G61400.1 47.564 349 166 6 18 356 10 351 1.81e-116 346
Msa0094420 AT1G03400.2 46.092 371 157 5 16 356 3 360 6.59e-113 337
Msa0094420 AT1G06620.2 52.899 276 127 2 15 289 9 282 2.72e-107 319
Msa0094420 AT5G59540.2 50.709 282 133 4 13 290 5 284 9.71e-105 313
Msa0094420 AT2G30840.2 53.597 278 127 1 14 289 2 279 4.10e-103 309
Msa0094420 AT1G06650.1 49.823 283 133 3 14 290 7 286 1.15e-101 306
Msa0094420 AT5G43450.2 49.826 287 137 2 13 296 4 286 1.40e-100 302
Msa0094420 AT1G06640.2 48.993 298 136 4 16 300 9 303 1.54e-100 303
Msa0094420 AT1G06640.3 50.890 281 129 3 16 290 9 286 1.99e-99 299
Msa0094420 AT5G43440.2 48.551 276 134 4 19 289 10 282 2.80e-93 283
Msa0094420 AT3G61400.2 47.350 283 135 5 18 290 10 288 3.88e-93 283
Msa0094420 AT1G04380.2 50.996 251 113 3 42 290 21 263 9.55e-89 271
Msa0094420 AT4G10490.1 33.526 346 213 6 37 376 11 345 2.41e-60 201
Msa0094420 AT4G10500.1 35.514 321 192 5 60 376 37 346 3.00e-60 200
Msa0094420 AT5G24530.1 35.260 346 205 8 36 374 5 338 1.82e-57 193
Msa0094420 AT3G13610.1 33.423 371 213 12 15 372 8 357 3.23e-57 192
Msa0094420 AT1G55290.1 33.994 353 201 9 32 372 25 357 3.37e-57 192
Msa0094420 AT2G36690.2 32.840 338 206 7 30 357 18 344 4.24e-53 182
Msa0094420 AT2G36690.1 32.840 338 206 7 30 357 18 344 4.24e-53 182
Msa0094420 AT3G12900.1 31.395 344 221 7 32 372 21 352 2.39e-51 177
Msa0094420 AT1G78550.1 32.945 343 209 11 38 372 23 352 8.95e-50 173
Msa0094420 AT4G16330.2 34.286 315 179 10 66 372 66 360 9.50e-50 173
Msa0094420 AT2G38240.1 31.956 363 217 11 23 372 2 347 1.25e-49 172
Msa0094420 AT4G25310.1 33.038 339 205 10 41 372 26 349 3.28e-48 169
Msa0094420 AT3G11180.1 33.505 388 220 13 1 372 29 394 6.71e-48 169
Msa0094420 AT3G11180.2 33.871 372 208 13 1 356 29 378 1.61e-47 168
Msa0094420 AT5G05600.1 31.129 363 231 9 19 372 13 365 7.33e-47 166
Msa0094420 AT3G19000.1 32.432 333 186 10 58 363 19 339 1.59e-46 164
Msa0094420 AT1G17020.1 31.395 344 215 9 38 372 23 354 4.67e-46 163
Msa0094420 AT4G25300.1 31.686 344 213 11 38 372 22 352 6.20e-45 160
Msa0094420 AT1G17010.1 29.825 342 217 9 41 372 26 354 5.05e-44 158
Msa0094420 AT1G62380.1 32.714 269 164 9 62 324 2 259 1.69e-41 150
Msa0094420 AT3G21420.1 32.059 340 201 11 33 356 17 342 3.34e-41 150
Msa0094420 AT2G44800.1 30.252 357 210 13 19 358 2 336 3.42e-41 150
Msa0094420 AT4G22880.1 29.446 343 221 9 33 361 7 342 3.86e-41 150
Msa0094420 AT4G22880.2 29.446 343 221 9 33 361 7 342 3.86e-41 150
Msa0094420 AT4G22880.3 29.446 343 221 9 33 361 7 342 3.86e-41 150
Msa0094420 AT3G51240.1 33.333 300 178 7 39 326 10 299 1.14e-40 149
Msa0094420 AT1G05010.1 33.086 269 156 6 66 324 3 257 3.30e-40 147
Msa0094420 AT3G19010.1 31.034 319 176 10 67 360 28 327 6.64e-40 146
Msa0094420 AT3G19010.4 31.034 319 176 10 67 360 28 327 6.64e-40 146
Msa0094420 AT1G12010.1 32.721 272 165 10 64 329 4 263 1.76e-39 144
Msa0094420 AT1G77330.1 30.519 308 179 12 65 358 1 287 2.59e-39 144
Msa0094420 AT1G78550.2 30.824 279 178 7 100 372 5 274 9.61e-39 141
Msa0094420 AT4G21200.1 31.757 296 176 7 65 356 40 313 4.75e-38 141
Msa0094420 AT3G19000.2 31.250 256 148 7 58 290 19 269 2.62e-37 137
Msa0094420 AT3G60290.1 30.645 310 186 8 60 358 45 336 3.13e-37 139
Msa0094420 AT5G08640.2 29.487 312 185 8 66 363 42 332 9.25e-37 137
Msa0094420 AT5G08640.1 29.487 312 185 8 66 363 42 332 9.25e-37 137
Msa0094420 AT3G55970.1 31.268 339 207 13 33 356 14 341 1.02e-36 138
Msa0094420 AT5G05600.2 30.357 280 185 6 19 290 13 290 8.52e-36 134
Msa0094420 AT4G16330.1 33.945 218 129 5 159 372 48 254 9.47e-36 133
Msa0094420 AT1G50960.1 29.642 307 197 7 54 358 27 316 3.32e-35 134
Msa0094420 AT4G25420.1 27.760 317 206 6 60 365 54 358 5.99e-35 134
Msa0094420 AT1G15550.1 32.278 316 171 13 66 365 56 344 3.30e-34 131
Msa0094420 AT4G25310.2 28.994 338 192 10 41 372 26 321 2.24e-33 128
Msa0094420 AT5G07480.1 28.803 309 186 9 67 358 44 335 2.84e-33 129
Msa0094420 AT3G19010.3 29.967 307 165 12 67 360 28 297 7.78e-33 127
Msa0094420 AT5G63590.1 30.323 310 175 9 63 352 10 298 1.54e-32 125
Msa0094420 AT5G20400.1 28.662 314 206 8 65 372 43 344 2.61e-32 126
Msa0094420 AT1G80330.1 30.931 333 182 13 66 375 48 355 3.86e-32 125
Msa0094420 AT2G19590.1 30.325 277 165 10 59 324 3 262 2.87e-31 122
Msa0094420 AT1G60980.1 28.228 333 203 8 65 378 55 370 4.20e-31 123
Msa0094420 AT5G12270.1 27.479 353 231 10 30 372 18 355 7.55e-31 122
Msa0094420 AT3G55970.2 31.868 273 167 10 33 290 14 282 5.10e-30 118
Msa0094420 AT4G25420.2 29.032 248 161 4 60 296 54 297 5.40e-30 118
Msa0094420 AT5G20550.1 28.387 310 198 10 54 352 31 327 1.92e-29 118
Msa0094420 AT5G07200.1 28.968 252 165 3 65 304 56 305 2.30e-29 118
Msa0094420 AT3G19010.2 29.070 258 146 7 67 299 28 273 3.65e-29 116
Msa0094420 AT1G80340.1 28.981 314 188 10 60 360 43 334 7.18e-29 116
Msa0094420 AT3G51240.2 39.073 151 89 2 178 326 66 215 9.67e-29 114
Msa0094420 AT4G25300.2 35.567 194 116 5 181 372 72 258 1.82e-28 113
Msa0094420 AT5G51810.1 25.846 325 216 6 65 378 61 371 5.72e-28 114
Msa0094420 AT5G63600.1 25.796 314 192 10 63 362 29 315 1.96e-27 112
Msa0094420 AT5G54000.2 27.517 298 198 9 65 355 44 330 3.34e-27 112
Msa0094420 AT4G21690.1 31.190 311 170 16 67 357 47 333 1.04e-26 110
Msa0094420 AT1G49390.1 27.619 315 208 10 65 372 43 344 1.07e-26 110
Msa0094420 AT5G63600.2 25.714 315 192 11 63 362 29 316 2.73e-26 108
Msa0094420 AT5G63595.1 27.686 242 153 4 63 304 21 240 4.23e-26 107
Msa0094420 AT3G47190.1 28.662 314 166 12 54 337 18 303 1.14e-25 107
Msa0094420 AT5G58660.1 26.174 298 173 6 59 324 26 308 1.26e-25 107
Msa0094420 AT5G51810.2 28.333 240 154 4 65 293 61 293 1.43e-25 106
Msa0094420 AT1G44090.1 28.939 311 191 9 61 355 57 353 3.13e-25 107
Msa0094420 AT1G30040.1 26.266 316 187 11 66 362 30 318 2.02e-24 103
Msa0094420 AT1G78440.1 27.184 309 192 12 67 361 18 307 1.20e-23 101
Msa0094420 AT5G63580.2 28.151 238 143 5 66 290 18 240 2.91e-23 98.6
Msa0094420 AT5G63580.1 28.632 234 139 5 66 286 18 236 2.93e-23 98.6
Msa0094420 AT2G19590.2 30.638 235 139 9 101 324 26 247 3.76e-23 99.4
Msa0094420 AT5G54000.1 27.413 259 172 8 104 355 1 250 2.09e-22 96.7
Msa0094420 AT1G49390.2 27.174 276 183 9 104 372 1 265 8.86e-22 95.1
Msa0094420 AT4G23340.1 29.450 309 188 10 63 360 6 295 1.25e-21 95.5
Msa0094420 AT3G46490.1 25.959 339 207 10 54 365 3 324 1.59e-20 92.4
Msa0094420 AT3G46500.5 27.492 331 199 13 54 362 3 314 2.31e-20 92.0
Msa0094420 AT5G07480.2 30.526 190 117 6 176 358 45 226 5.18e-20 89.4
Msa0094420 AT5G43935.1 24.756 307 173 12 67 357 19 283 7.34e-20 90.1
Msa0094420 AT2G34555.1 27.554 323 171 15 67 362 27 313 9.20e-20 90.5
Msa0094420 AT1G47990.1 28.013 307 182 14 67 356 15 299 1.81e-19 89.4
Msa0094420 AT5G58660.2 25.468 267 152 8 56 290 23 274 1.90e-19 88.6
Msa0094420 AT1G35190.2 26.866 335 178 14 59 365 1 296 2.20e-19 89.0
Msa0094420 AT3G50210.4 29.703 303 172 13 66 333 7 303 6.06e-19 87.8
Msa0094420 AT3G50210.1 29.703 303 172 13 66 333 7 303 6.06e-19 87.8
Msa0094420 AT3G50210.3 29.703 303 172 13 66 333 7 303 6.06e-19 87.8
Msa0094420 AT1G35190.1 26.608 342 193 13 59 365 1 319 2.19e-18 86.3
Msa0094420 AT3G49630.1 28.369 282 178 8 67 326 9 288 2.02e-17 83.6
Msa0094420 AT1G02400.1 27.564 312 180 15 66 356 23 309 5.80e-17 82.0
Msa0094420 AT3G49630.3 28.000 275 180 7 68 326 12 284 7.05e-17 82.0
Msa0094420 AT4G16765.6 29.064 203 127 6 169 362 47 241 1.25e-16 79.7
Msa0094420 AT4G16765.1 29.064 203 127 6 169 362 47 241 1.25e-16 79.7
Msa0094420 AT4G16765.2 29.064 203 127 6 169 362 47 241 1.25e-16 79.7
Msa0094420 AT3G49620.1 25.510 294 190 9 55 324 23 311 2.15e-16 80.9
Msa0094420 AT4G23340.2 32.967 182 107 7 187 360 3 177 1.59e-15 75.5
Msa0094420 AT3G46490.2 25.180 278 172 8 54 304 3 271 1.78e-15 77.4
Msa0094420 AT3G46500.4 29.348 184 114 5 187 362 3 178 5.65e-15 73.6
Msa0094420 AT3G46500.10 28.643 199 125 6 172 362 51 240 1.18e-14 73.9
Msa0094420 AT3G46500.1 28.643 199 125 6 172 362 51 240 1.18e-14 73.9
Msa0094420 AT4G16765.5 34.109 129 72 4 239 362 75 195 1.22e-14 72.8
Msa0094420 AT2G06960.1 34.328 134 67 4 230 363 33 145 2.32e-14 70.9
Msa0094420 AT4G16765.3 29.630 189 116 6 169 348 47 227 2.98e-14 72.4
Msa0094420 AT3G46500.7 26.246 301 180 12 54 323 3 292 7.64e-14 72.4
Msa0094420 AT3G46480.1 32.061 131 76 3 240 365 155 277 2.68e-13 70.5
Msa0094420 AT1G52820.1 23.220 323 217 9 65 374 10 314 1.85e-12 68.6

Find 83 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATTAGCTTCCTCTAAT+TGG 0.221971 1_2:-77618538 None:intergenic
ATTATTTATTATTCCAATAT+TGG 0.228107 1_2:+77618944 Msa0094420:CDS
AAGAATTGCCTCAAGTATTT+AGG 0.231549 1_2:+77619041 Msa0094420:CDS
TGAGGCAATTCTTCTGGTTT+TGG 0.234939 1_2:-77619031 None:intergenic
TTCTACATACAAACCAATAT+TGG 0.244625 1_2:-77618957 None:intergenic
TTGATTCCATATTGTGTTAG+AGG 0.264876 1_2:+77618456 Msa0094420:five_prime_UTR
GTAACTAGAAACCACATATA+TGG 0.284266 1_2:-77620967 None:intergenic
GTCTTGGATGAGATGATTAA+TGG 0.307431 1_2:+77618851 Msa0094420:CDS
GAACTTGAAGACCACCAATT+TGG 0.309658 1_2:-77619605 None:intergenic
GAAGTTTCATCAAAGATTTA+TGG 0.309751 1_2:+77620130 Msa0094420:CDS
AATACTTGAGGCAATTCTTC+TGG 0.322461 1_2:-77619037 None:intergenic
AAGAAAATCCACCAGTCTAT+AGG 0.322522 1_2:+77620176 Msa0094420:CDS
GCTATTTGGAGAGACTCTTT+TGG 0.335560 1_2:+77618986 Msa0094420:CDS
TCTGATGTCAGTTCCTTGAT+AGG 0.338133 1_2:-77620154 None:intergenic
ATCTCATCCAAGACATTAAT+AGG 0.339754 1_2:-77618842 None:intergenic
GCTTCCTCTAATTGGTTTGT+TGG 0.363296 1_2:-77618530 None:intergenic
TCCTGAACCAGAGTTAACTA+TGG 0.366026 1_2:+77619533 Msa0094420:CDS
AGAAAATCCACCAGTCTATA+GGG 0.381819 1_2:+77620177 Msa0094420:CDS
TGGAATTCCTATTAATGTCT+TGG 0.396054 1_2:+77618835 Msa0094420:CDS
CCCATAGTTAACTCTGGTTC+AGG 0.399949 1_2:-77619534 None:intergenic
AAGTTCTTCATGAGAATCAA+TGG 0.405916 1_2:+77619622 Msa0094420:CDS
TCGATCCAACTTGAGTATTC+CGG 0.418237 1_2:+77618700 Msa0094420:CDS
TTCTTCCAGGTGATTAATCA+TGG 0.428736 1_2:+77618815 Msa0094420:CDS
GAGTTATTGTCAGAGGCTCT+TGG 0.433628 1_2:+77619435 Msa0094420:CDS
GTCTTGCCACCAAGTCATAA+AGG 0.444437 1_2:+77620058 Msa0094420:CDS
ATCTTTGATGAAACTTCAGT+TGG 0.445378 1_2:-77620124 None:intergenic
TTTCGTCAGTGTTTATCATC+GGG 0.458703 1_2:+77620036 Msa0094420:CDS
GAAACCAACAAACCAATTAG+AGG 0.462049 1_2:+77618526 Msa0094420:CDS
ATCCGCATGACGGAGCAAAT+AGG 0.465610 1_2:-77620909 None:intergenic
CTAGTTTCATATAAAGATGA+TGG 0.465743 1_2:+77618502 Msa0094420:exon
CTTGGTCCTTTATGACTTGG+TGG 0.465957 1_2:-77620064 None:intergenic
TCATAAAGGACCAAGAGTTT+CGG 0.474992 1_2:+77620072 Msa0094420:CDS
GAATCGAAAGCTGGTGTAAG+AGG 0.475343 1_2:+77618599 Msa0094420:CDS
TAACTAGAAACCACATATAT+GGG 0.477030 1_2:-77620966 None:intergenic
ACTCTTGGTCCTTTATGACT+TGG 0.484558 1_2:-77620067 None:intergenic
GGTATTCTAAAGCTCTCTAG+TGG 0.485439 1_2:+77620791 Msa0094420:intron
CATAAAAGTTGCAGAATACA+TGG 0.494667 1_2:+77620201 Msa0094420:CDS
ATTTCGTCAGTGTTTATCAT+CGG 0.496785 1_2:+77620035 Msa0094420:CDS
TCTGTACCCATAGTTAACTC+TGG 0.498596 1_2:-77619540 None:intergenic
TGGTTTCTAGTTACGAAGGT+TGG 0.500399 1_2:+77620976 Msa0094420:CDS
GCATGATGGAAGCTCTAAGT+TGG 0.506991 1_2:+77620243 Msa0094420:CDS
TGTTTATTTCACAACTTGAA+AGG 0.507400 1_2:-77620268 None:intergenic
GTTAATGTTCCTCCTCTACA+TGG 0.507555 1_2:+77619645 Msa0094420:CDS
AGTTCTTCATGAGAATCAAT+GGG 0.512480 1_2:+77619623 Msa0094420:CDS
CAATCATGCTATGCGTATTG+AGG 0.519638 1_2:+77618754 Msa0094420:CDS
AAAGATTTATGGTCCTATCA+AGG 0.521209 1_2:+77620141 Msa0094420:CDS
GCTATGCGTATTGAGGTAAT+CGG 0.522096 1_2:+77618761 Msa0094420:CDS
GTTAACTCTGGTTCAGGACA+TGG 0.527310 1_2:-77619528 None:intergenic
ATGAACAAGACGTTGTTGAA+AGG 0.535111 1_2:+77618888 Msa0094420:CDS
AACCTATTTGCTCCGTCATG+CGG 0.535468 1_2:+77620907 Msa0094420:CDS
ACCTTTGATGAATCGAAAGC+TGG 0.535722 1_2:+77618590 Msa0094420:CDS
GAATTCCATGATTAATCACC+TGG 0.536258 1_2:-77618820 None:intergenic
AAACTAGCTACCGAAACTCT+TGG 0.537755 1_2:-77620082 None:intergenic
TTTATGTCCCTATAGACTGG+TGG 0.549958 1_2:-77620184 None:intergenic
TATGACCGGAATACTCAAGT+TGG 0.552151 1_2:-77618705 None:intergenic
ACCAGCTTTCGATTCATCAA+AGG 0.554563 1_2:-77618591 None:intergenic
ATGGAATCAAAAGCTGTGTA+TGG 0.555178 1_2:-77618443 None:intergenic
AAAGAATTGAGTTGTGCTGA+AGG 0.563547 1_2:+77619477 Msa0094420:CDS
GTAAGAGGTCTTATAGAGTC+CGG 0.564520 1_2:+77618614 Msa0094420:CDS
GGTTTCTCGACCCATATATG+TGG 0.568608 1_2:+77620956 Msa0094420:CDS
GGAGCTCTTGTTGTCAACAT+AGG 0.574451 1_2:+77619666 Msa0094420:CDS
AGATGATTAATGGAATTCGT+AGG 0.577218 1_2:+77618861 Msa0094420:CDS
GCGTGGAATCTTTGTTACAC+CGG 0.579338 1_2:-77618633 None:intergenic
TCCAAGAAAATAATGTCACT+CGG 0.595147 1_2:+77619399 Msa0094420:CDS
CCTGAACCAGAGTTAACTAT+GGG 0.596970 1_2:+77619534 Msa0094420:CDS
GTATTCTAAAGCTCTCTAGT+GGG 0.605243 1_2:+77620792 Msa0094420:intron
AAATAATACCTAAATACTTG+AGG 0.619921 1_2:-77619049 None:intergenic
ATGGTGGTGAATTAAAATGA+AGG 0.622257 1_2:-77618424 None:intergenic
TATGTGGTTTCTAGTTACGA+AGG 0.624150 1_2:+77620972 Msa0094420:CDS
ACAACAAGAGCTCCATGTAG+AGG 0.625496 1_2:-77619657 None:intergenic
CCTTCTGAGACTACTTCAAG+TGG 0.632183 1_2:+77620875 Msa0094420:CDS
CCACTTGAAGTAGTCTCAGA+AGG 0.632258 1_2:-77620875 None:intergenic
CAGTGTTGTTCAATGTGTCA+CGG 0.634706 1_2:-77618664 None:intergenic
ATGTCTTTGAGATCTATGAC+CGG 0.638913 1_2:-77618719 None:intergenic
CTAGTGGGTGTTGAAGATTG+TGG 0.641338 1_2:+77620807 Msa0094420:CDS
GTGTCACGGTAGAACATGCG+TGG 0.641455 1_2:-77618650 None:intergenic
AAAATGCATGCAAAGATTGG+GGG 0.645357 1_2:+77618792 Msa0094420:CDS
ACAAGAGCTCCATGTAGAGG+AGG 0.657858 1_2:-77619654 None:intergenic
GGAGCAAATAGGTTCGTCGA+CGG 0.675187 1_2:-77620898 None:intergenic
AACCACAGTGATCCGCATGA+CGG 0.679578 1_2:-77620919 None:intergenic
CTCCGTCATGCGGATCACTG+TGG 0.688001 1_2:+77620917 Msa0094420:CDS
AACTCTGGTTCAGGACATGG+CGG 0.690066 1_2:-77619525 None:intergenic
GAATCAAAAGCTGTGTATGG+TGG 0.698493 1_2:-77618440 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTATTATTCCAATAT+TGG + chr1_2:77618944-77618963 Msa0094420:CDS 10.0%
!!! TTTTTTTTAAAATAGTTTAG+TGG + chr1_2:77619103-77619122 Msa0094420:intron 10.0%
!! ATTTCAATTATATAAACTAA+AGG + chr1_2:77619289-77619308 Msa0094420:intron 10.0%
!!! CATATTTTAAACTTTTATTT+TGG + chr1_2:77619315-77619334 Msa0094420:intron 10.0%
!!! TATTTTAAACTTTTATTTTG+GGG + chr1_2:77619317-77619336 Msa0094420:intron 10.0%
!!! AAATTTATAAGTTTGATTTT+TGG - chr1_2:77620303-77620322 None:intergenic 10.0%
!!! ATTTTATTATAATTTTGGAT+TGG - chr1_2:77620746-77620765 None:intergenic 10.0%
!!! CTTTGAAAATTAAAAAATTG+CGG + chr1_2:77619174-77619193 Msa0094420:intron 15.0%
!! TTTGAAAATTAAAAAATTGC+GGG + chr1_2:77619175-77619194 Msa0094420:intron 15.0%
!!! TTTACAAGTAAAGTATTTAA+TGG + chr1_2:77619695-77619714 Msa0094420:intron 15.0%
!!! ACTATAGACTTTTTTTTTTT+TGG + chr1_2:77619720-77619739 Msa0094420:intron 15.0%
!! TTGGAAAAAAATAAATAAAG+TGG + chr1_2:77620574-77620593 Msa0094420:intron 15.0%
!!! AATTACATAGATTATTTTAG+CGG + chr1_2:77620620-77620639 Msa0094420:intron 15.0%
!!! GGTACATTTTATTATAATTT+TGG - chr1_2:77620751-77620770 None:intergenic 15.0%
!!! ATTTTCCTTATCTCTTTAAA+AGG + chr1_2:77618385-77618404 Msa0094420:five_prime_UTR 20.0%
!!! TAATTTTCTTTGTCAAATCA+CGG - chr1_2:77618928-77618947 None:intergenic 20.0%
!! AAATAATACCTAAATACTTG+AGG - chr1_2:77619052-77619071 None:intergenic 20.0%
!!! TTTATAAGTTTGATTTTTGG+TGG - chr1_2:77620300-77620319 None:intergenic 20.0%
!! AAAACATTATTTCAATCTTC+AGG - chr1_2:77620341-77620360 None:intergenic 20.0%
!! CATTTCATAAGGTTATTATT+AGG + chr1_2:77620502-77620521 Msa0094420:intron 20.0%
!!! ATATTTTATTTTGAGTGATC+AGG + chr1_2:77620646-77620665 Msa0094420:intron 20.0%
! CTAGTTTCATATAAAGATGA+TGG + chr1_2:77618502-77618521 Msa0094420:exon 25.0%
!! TTCAACTTTTCTATCATAAC+TGG - chr1_2:77618564-77618583 None:intergenic 25.0%
! TTAAAAATGCATGCAAAGAT+TGG + chr1_2:77618789-77618808 Msa0094420:CDS 25.0%
! TAAAAATGCATGCAAAGATT+GGG + chr1_2:77618790-77618809 Msa0094420:CDS 25.0%
! TTCTACATACAAACCAATAT+TGG - chr1_2:77618960-77618979 None:intergenic 25.0%
! ATGTAGAAAAATCTGCTATT+TGG + chr1_2:77618972-77618991 Msa0094420:CDS 25.0%
!!! ATGAGTTTTATTAGTAGTAC+TGG + chr1_2:77619256-77619275 Msa0094420:intron 25.0%
!! ATACTTTTACAAGACCAAAT+TGG + chr1_2:77619591-77619610 Msa0094420:CDS 25.0%
!!! TATTACTATTGCACTTTTTG+AGG + chr1_2:77619862-77619881 Msa0094420:intron 25.0%
! GAAGTTTCATCAAAGATTTA+TGG + chr1_2:77620130-77620149 Msa0094420:CDS 25.0%
! TGTTTATTTCACAACTTGAA+AGG - chr1_2:77620271-77620290 None:intergenic 25.0%
! TACAGCATAAAATAGCTAAA+AGG - chr1_2:77620376-77620395 None:intergenic 25.0%
! ATTAGGTCCCATTATTAATA+AGG + chr1_2:77620519-77620538 Msa0094420:intron 25.0%
! TTGGCAACCTTATTAATAAT+GGG - chr1_2:77620529-77620548 None:intergenic 25.0%
! AGAATACCCAAATTAATAGA+GGG - chr1_2:77620779-77620798 None:intergenic 25.0%
! TAGAATACCCAAATTAATAG+AGG - chr1_2:77620780-77620799 None:intergenic 25.0%
! TAACTAGAAACCACATATAT+GGG - chr1_2:77620969-77620988 None:intergenic 25.0%
!! TAGAGCCTTTTAAAGAGATA+AGG - chr1_2:77618393-77618412 None:intergenic 30.0%
! ATGGTGGTGAATTAAAATGA+AGG - chr1_2:77618427-77618446 None:intergenic 30.0%
TTGATTCCATATTGTGTTAG+AGG + chr1_2:77618456-77618475 Msa0094420:five_prime_UTR 30.0%
! AATCATTAGCTTCCTCTAAT+TGG - chr1_2:77618541-77618560 None:intergenic 30.0%
!!! CTTTGCATGCATTTTTAAGT+TGG - chr1_2:77618787-77618806 None:intergenic 30.0%
AAAAATGCATGCAAAGATTG+GGG + chr1_2:77618791-77618810 Msa0094420:CDS 30.0%
TGGAATTCCTATTAATGTCT+TGG + chr1_2:77618835-77618854 Msa0094420:CDS 30.0%
ATCTCATCCAAGACATTAAT+AGG - chr1_2:77618845-77618864 None:intergenic 30.0%
AGATGATTAATGGAATTCGT+AGG + chr1_2:77618861-77618880 Msa0094420:CDS 30.0%
AAGAATTGCCTCAAGTATTT+AGG + chr1_2:77619041-77619060 Msa0094420:CDS 30.0%
TTGATATCTTAAGAGCTCTA+GGG - chr1_2:77619214-77619233 None:intergenic 30.0%
TTTGATATCTTAAGAGCTCT+AGG - chr1_2:77619215-77619234 None:intergenic 30.0%
TCCAAGAAAATAATGTCACT+CGG + chr1_2:77619399-77619418 Msa0094420:CDS 30.0%
!!! ACTTTTTGAGTTATTGTCAG+AGG + chr1_2:77619428-77619447 Msa0094420:CDS 30.0%
AAGTTCTTCATGAGAATCAA+TGG + chr1_2:77619622-77619641 Msa0094420:CDS 30.0%
AGTTCTTCATGAGAATCAAT+GGG + chr1_2:77619623-77619642 Msa0094420:CDS 30.0%
ATTTCGTCAGTGTTTATCAT+CGG + chr1_2:77620035-77620054 Msa0094420:CDS 30.0%
ATCTTTGATGAAACTTCAGT+TGG - chr1_2:77620127-77620146 None:intergenic 30.0%
AAAGATTTATGGTCCTATCA+AGG + chr1_2:77620141-77620160 Msa0094420:CDS 30.0%
CATAAAAGTTGCAGAATACA+TGG + chr1_2:77620201-77620220 Msa0094420:CDS 30.0%
!!! ATGGACAATCGTTTTAAGAA+GGG + chr1_2:77620220-77620239 Msa0094420:CDS 30.0%
!! ATGTAAATGACGCTTGTTAT+TGG - chr1_2:77620407-77620426 None:intergenic 30.0%
!! GTTTTGGTCAACATTTCATA+AGG + chr1_2:77620491-77620510 Msa0094420:intron 30.0%
CTTGGCAACCTTATTAATAA+TGG - chr1_2:77620530-77620549 None:intergenic 30.0%
AACATAAACGTCACATTGAT+AGG - chr1_2:77620554-77620573 None:intergenic 30.0%
! TCAATGTGACGTTTATGTTT+TGG + chr1_2:77620555-77620574 Msa0094420:intron 30.0%
AAAGTGGAGTTTATGTTTAG+TGG + chr1_2:77620590-77620609 Msa0094420:intron 30.0%
!! TTTTGAGTGATCAGGTAAAT+TGG + chr1_2:77620654-77620673 Msa0094420:intron 30.0%
!!! TGTGGTTCTTTTAAGATATG+TGG + chr1_2:77620935-77620954 Msa0094420:CDS 30.0%
GTAACTAGAAACCACATATA+TGG - chr1_2:77620970-77620989 None:intergenic 30.0%
ATGGAATCAAAAGCTGTGTA+TGG - chr1_2:77618446-77618465 None:intergenic 35.0%
! GTTTTGCCTCTAACACAATA+TGG - chr1_2:77618465-77618484 None:intergenic 35.0%
GAAACCAACAAACCAATTAG+AGG + chr1_2:77618526-77618545 Msa0094420:CDS 35.0%
!! ATGTCTTTGAGATCTATGAC+CGG - chr1_2:77618722-77618741 None:intergenic 35.0%
AAAATGCATGCAAAGATTGG+GGG + chr1_2:77618792-77618811 Msa0094420:CDS 35.0%
TTCTTCCAGGTGATTAATCA+TGG + chr1_2:77618815-77618834 Msa0094420:CDS 35.0%
GAATTCCATGATTAATCACC+TGG - chr1_2:77618823-77618842 None:intergenic 35.0%
GTCTTGGATGAGATGATTAA+TGG + chr1_2:77618851-77618870 Msa0094420:CDS 35.0%
ATGAACAAGACGTTGTTGAA+AGG + chr1_2:77618888-77618907 Msa0094420:CDS 35.0%
AATACTTGAGGCAATTCTTC+TGG - chr1_2:77619040-77619059 None:intergenic 35.0%
! TCCGAGTGACATTATTTTCT+TGG - chr1_2:77619403-77619422 None:intergenic 35.0%
! CAGCACAACTCAATTCTTTT+AGG - chr1_2:77619476-77619495 None:intergenic 35.0%
! AAAGAATTGAGTTGTGCTGA+AGG + chr1_2:77619477-77619496 Msa0094420:CDS 35.0%
! GCTGAAGGACTTTTTATTCA+AGG + chr1_2:77619492-77619511 Msa0094420:CDS 35.0%
! CTTTTACAAGACCAAATTGG+TGG + chr1_2:77619594-77619613 Msa0094420:CDS 35.0%
TTACTACCACTAAATGAGTC+TGG + chr1_2:77619905-77619924 Msa0094420:intron 35.0%
TTTCGTCAGTGTTTATCATC+GGG + chr1_2:77620036-77620055 Msa0094420:CDS 35.0%
TCATAAAGGACCAAGAGTTT+CGG + chr1_2:77620072-77620091 Msa0094420:CDS 35.0%
AAGAAAATCCACCAGTCTAT+AGG + chr1_2:77620176-77620195 Msa0094420:CDS 35.0%
AGAAAATCCACCAGTCTATA+GGG + chr1_2:77620177-77620196 Msa0094420:CDS 35.0%
! ACTTTTATGTCCCTATAGAC+TGG - chr1_2:77620190-77620209 None:intergenic 35.0%
!!! CATGGACAATCGTTTTAAGA+AGG + chr1_2:77620219-77620238 Msa0094420:CDS 35.0%
!!! TGGACAATCGTTTTAAGAAG+GGG + chr1_2:77620221-77620240 Msa0094420:CDS 35.0%
AGCAATAACACAACCTTGAT+TGG + chr1_2:77620430-77620449 Msa0094420:intron 35.0%
AACCTTGATTGGATGTTGTA+AGG + chr1_2:77620441-77620460 Msa0094420:intron 35.0%
AACCTTACAACATCCAATCA+AGG - chr1_2:77620446-77620465 None:intergenic 35.0%
GTTATAGACTTGTGTAGTTG+TGG + chr1_2:77620469-77620488 Msa0094420:intron 35.0%
CTACGACCCTCTATTAATTT+GGG + chr1_2:77620770-77620789 Msa0094420:intron 35.0%
!! GTATTCTAAAGCTCTCTAGT+GGG + chr1_2:77620792-77620811 Msa0094420:intron 35.0%
!! TATGTGGTTTCTAGTTACGA+AGG + chr1_2:77620972-77620991 Msa0094420:CDS 35.0%
GAATCAAAAGCTGTGTATGG+TGG - chr1_2:77618443-77618462 None:intergenic 40.0%
!! GCTTCCTCTAATTGGTTTGT+TGG - chr1_2:77618533-77618552 None:intergenic 40.0%
ACCTTTGATGAATCGAAAGC+TGG + chr1_2:77618590-77618609 Msa0094420:CDS 40.0%
ACCAGCTTTCGATTCATCAA+AGG - chr1_2:77618594-77618613 None:intergenic 40.0%
! GTAAGAGGTCTTATAGAGTC+CGG + chr1_2:77618614-77618633 Msa0094420:CDS 40.0%
! CAGTGTTGTTCAATGTGTCA+CGG - chr1_2:77618667-77618686 None:intergenic 40.0%
TCGATCCAACTTGAGTATTC+CGG + chr1_2:77618700-77618719 Msa0094420:CDS 40.0%
TATGACCGGAATACTCAAGT+TGG - chr1_2:77618708-77618727 None:intergenic 40.0%
CAATCATGCTATGCGTATTG+AGG + chr1_2:77618754-77618773 Msa0094420:CDS 40.0%
GCTATGCGTATTGAGGTAAT+CGG + chr1_2:77618761-77618780 Msa0094420:CDS 40.0%
! GCTATTTGGAGAGACTCTTT+TGG + chr1_2:77618986-77619005 Msa0094420:CDS 40.0%
! AGACTCTTTTGGATGTACCA+TGG + chr1_2:77618997-77619016 Msa0094420:CDS 40.0%
!!! TCTTCTGGTTTTGGTGGATT+AGG - chr1_2:77619025-77619044 None:intergenic 40.0%
!!! TGAGGCAATTCTTCTGGTTT+TGG - chr1_2:77619034-77619053 None:intergenic 40.0%
TCCTGAACCAGAGTTAACTA+TGG + chr1_2:77619533-77619552 Msa0094420:CDS 40.0%
CCTGAACCAGAGTTAACTAT+GGG + chr1_2:77619534-77619553 Msa0094420:CDS 40.0%
TCTGTACCCATAGTTAACTC+TGG - chr1_2:77619543-77619562 None:intergenic 40.0%
GAACTTGAAGACCACCAATT+TGG - chr1_2:77619608-77619627 None:intergenic 40.0%
GTTAATGTTCCTCCTCTACA+TGG + chr1_2:77619645-77619664 Msa0094420:CDS 40.0%
ACTAGTCCAGACTCATTTAG+TGG - chr1_2:77619914-77619933 None:intergenic 40.0%
ACTCTTGGTCCTTTATGACT+TGG - chr1_2:77620070-77620089 None:intergenic 40.0%
AAACTAGCTACCGAAACTCT+TGG - chr1_2:77620085-77620104 None:intergenic 40.0%
TCTGATGTCAGTTCCTTGAT+AGG - chr1_2:77620157-77620176 None:intergenic 40.0%
TTTATGTCCCTATAGACTGG+TGG - chr1_2:77620187-77620206 None:intergenic 40.0%
GATTGGATGTTGTAAGGTTG+TGG + chr1_2:77620447-77620466 Msa0094420:intron 40.0%
! GACTTGTGTAGTTGTGGTTT+TGG + chr1_2:77620475-77620494 Msa0094420:intron 40.0%
AACGTCACATTGATAGGACT+TGG - chr1_2:77620548-77620567 None:intergenic 40.0%
CCAAATTAATAGAGGGTCGT+AGG - chr1_2:77620772-77620791 None:intergenic 40.0%
CCTACGACCCTCTATTAATT+TGG + chr1_2:77620769-77620788 Msa0094420:intron 40.0%
!! GGTATTCTAAAGCTCTCTAG+TGG + chr1_2:77620791-77620810 Msa0094420:intron 40.0%
!! CTCGTTTTGTTACTGACACA+AGG + chr1_2:77620831-77620850 Msa0094420:CDS 40.0%
!! GTTTTGTTACTGACACAAGG+TGG + chr1_2:77620834-77620853 Msa0094420:CDS 40.0%
!! TGGTTTCTAGTTACGAAGGT+TGG + chr1_2:77620976-77620995 Msa0094420:CDS 40.0%
GAATCGAAAGCTGGTGTAAG+AGG + chr1_2:77618599-77618618 Msa0094420:CDS 45.0%
GCGTGGAATCTTTGTTACAC+CGG - chr1_2:77618636-77618655 None:intergenic 45.0%
!!! TTTTGGTGGATTAGGAGCCA+TGG - chr1_2:77619017-77619036 None:intergenic 45.0%
!!! GGCAATTCTTCTGGTTTTGG+TGG - chr1_2:77619031-77619050 None:intergenic 45.0%
GAGTTATTGTCAGAGGCTCT+TGG + chr1_2:77619435-77619454 Msa0094420:CDS 45.0%
! GTTAACTCTGGTTCAGGACA+TGG - chr1_2:77619531-77619550 None:intergenic 45.0%
! CCCATAGTTAACTCTGGTTC+AGG - chr1_2:77619537-77619556 None:intergenic 45.0%
ACAACAAGAGCTCCATGTAG+AGG - chr1_2:77619660-77619679 None:intergenic 45.0%
! GGAGCTCTTGTTGTCAACAT+AGG + chr1_2:77619666-77619685 Msa0094420:CDS 45.0%
GTCTTGCCACCAAGTCATAA+AGG + chr1_2:77620058-77620077 Msa0094420:CDS 45.0%
! CTTGGTCCTTTATGACTTGG+TGG - chr1_2:77620067-77620086 None:intergenic 45.0%
!!! CGTTTTAAGAAGGGGCATGA+TGG + chr1_2:77620229-77620248 Msa0094420:CDS 45.0%
!! GCATGATGGAAGCTCTAAGT+TGG + chr1_2:77620243-77620262 Msa0094420:CDS 45.0%
!! CTAGTGGGTGTTGAAGATTG+TGG + chr1_2:77620807-77620826 Msa0094420:CDS 45.0%
CCACTTGAAGTAGTCTCAGA+AGG - chr1_2:77620878-77620897 None:intergenic 45.0%
!! CCTTCTGAGACTACTTCAAG+TGG + chr1_2:77620875-77620894 Msa0094420:CDS 45.0%
AACCTATTTGCTCCGTCATG+CGG + chr1_2:77620907-77620926 Msa0094420:CDS 45.0%
GGTTTCTCGACCCATATATG+TGG + chr1_2:77620956-77620975 Msa0094420:CDS 45.0%
!!! ATATTTTAAACTTTTATTTT+GGG + chr1_2:77619316-77619335 Msa0094420:intron 5.0%
CAAAGATTGGGGGTTCTTCC+AGG + chr1_2:77618802-77618821 Msa0094420:CDS 50.0%
! AACTCTGGTTCAGGACATGG+CGG - chr1_2:77619528-77619547 None:intergenic 50.0%
ACAAGAGCTCCATGTAGAGG+AGG - chr1_2:77619657-77619676 None:intergenic 50.0%
GGAGCAAATAGGTTCGTCGA+CGG - chr1_2:77620901-77620920 None:intergenic 50.0%
! ATCCGCATGACGGAGCAAAT+AGG - chr1_2:77620912-77620931 None:intergenic 50.0%
AACCACAGTGATCCGCATGA+CGG - chr1_2:77620922-77620941 None:intergenic 50.0%
GTGTCACGGTAGAACATGCG+TGG - chr1_2:77618653-77618672 None:intergenic 55.0%
!! CTTAAGAGCTCTAGGGACGC+AGG - chr1_2:77619207-77619226 None:intergenic 55.0%
CTCCGTCATGCGGATCACTG+TGG + chr1_2:77620917-77620936 Msa0094420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77618382 77621013 77618382 ID=Msa0094420;Name=Msa0094420
chr1_2 mRNA 77618382 77621013 77618382 ID=Msa0094420-mRNA-1;Parent=Msa0094420;Name=Msa0094420-mRNA-1;_AED=0.22;_eAED=0.22;_QI=136|0.66|0.5|1|1|1|4|0|444
chr1_2 exon 77618382 77619062 77618382 ID=Msa0094420-mRNA-1:exon:27527;Parent=Msa0094420-mRNA-1
chr1_2 exon 77619380 77619701 77619380 ID=Msa0094420-mRNA-1:exon:27528;Parent=Msa0094420-mRNA-1
chr1_2 exon 77620019 77620275 77620019 ID=Msa0094420-mRNA-1:exon:27529;Parent=Msa0094420-mRNA-1
chr1_2 exon 77620803 77621013 77620803 ID=Msa0094420-mRNA-1:exon:27530;Parent=Msa0094420-mRNA-1
chr1_2 five_prime_UTR 77618382 77618517 77618382 ID=Msa0094420-mRNA-1:five_prime_utr;Parent=Msa0094420-mRNA-1
chr1_2 CDS 77618518 77619062 77618518 ID=Msa0094420-mRNA-1:cds;Parent=Msa0094420-mRNA-1
chr1_2 CDS 77619380 77619701 77619380 ID=Msa0094420-mRNA-1:cds;Parent=Msa0094420-mRNA-1
chr1_2 CDS 77620019 77620275 77620019 ID=Msa0094420-mRNA-1:cds;Parent=Msa0094420-mRNA-1
chr1_2 CDS 77620803 77621013 77620803 ID=Msa0094420-mRNA-1:cds;Parent=Msa0094420-mRNA-1
Gene Sequence

>Msa0094420

ATGATGGTGAAACCAACAAACCAATTAGAGGAAGCTAATGATTCCAGTTATGATAGAAAAGTTGAAGTGACAACCTTTGATGAATCGAAAGCTGGTGTAAGAGGTCTTATAGAGTCCGGTGTAACAAAGATTCCACGCATGTTCTACCGTGACACATTGAACAACACTGAACATTTAGTCAATCGATCCAACTTGAGTATTCCGGTCATAGATCTCAAAGACATACACAACAATATCAATCATGCTATGCGTATTGAGGTAATCGGCCAACTTAAAAATGCATGCAAAGATTGGGGGTTCTTCCAGGTGATTAATCATGGAATTCCTATTAATGTCTTGGATGAGATGATTAATGGAATTCGTAGGTTTCATGAACAAGACGTTGTTGAAAGGAAAAAATTTTACAACCGTGATTTGACAAAGAAAATTATTTATTATTCCAATATTGGTTTGTATGTAGAAAAATCTGCTATTTGGAGAGACTCTTTTGGATGTACCATGGCTCCTAATCCACCAAAACCAGAAGAATTGCCTCAAGTATTTAGAGACATTATAATAGAATATTCCAAGAAAATAATGTCACTCGGATCTACACTTTTTGAGTTATTGTCAGAGGCTCTTGGCTTGAATTCATCTTACCTAAAAGAATTGAGTTGTGCTGAAGGACTTTTTATTCAAGGTCATTATTATCCGCCATGTCCTGAACCAGAGTTAACTATGGGTACAGACAAGCACGCTGATTCTAGCTTCATGACAATACTTTTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATGAGAATCAATGGGTTAATGTTCCTCCTCTACATGGAGCTCTTGTTGTCAACATAGGAGATCTTTTACAACTTATAACAAATGACAATTTCGTCAGTGTTTATCATCGGGTCTTGCCACCAAGTCATAAAGGACCAAGAGTTTCGGTAGCTAGTTTCTTTGCAAATTCTCATGATCCAACTGAAGTTTCATCAAAGATTTATGGTCCTATCAAGGAACTGACATCAGAAGAAAATCCACCAGTCTATAGGGACATAAAAGTTGCAGAATACATGGACAATCGTTTTAAGAAGGGGCATGATGGAAGCTCTAAGTTGGAGCCTTTCAACTCTCTAGTGGGTGTTGAAGATTGTGGTCTCGTTTTGTTACTGACACAAGGTGGTGTACACTTTCAGCGTCACCTTCTGAGACTACTTCAAGTGGCCGTCGACGAACCTATTTGCTCCGTCATGCGGATCACTGTGGTTCTTTTAAGATATGTGGTTTCTCGACCCATATATGTGGTTTCTAGTTACGAAGGTTGGAGTGAGTTCAGTTGA
Protein sequence

>Msa0094420

MMVKPTNQLEEANDSSYDRKVEVTTFDESKAGVRGLIESGVTKIPRMFYRDTLNNTEHLVNRSNLSIPVIDLKDIHNNINHAMRIEVIGQLKNACKDWGFFQVINHGIPINVLDEMINGIRRFHEQDVVERKKFYNRDLTKKIIYYSNIGLYVEKSAIWRDSFGCTMAPNPPKPEELPQVFRDIIIEYSKKIMSLGSTLFELLSEALGLNSSYLKELSCAEGLFIQGHYYPPCPEPELTMGTDKHADSSFMTILLQDQIGGLQVLHENQWVNVPPLHGALVVNIGDLLQLITNDNFVSVYHRVLPPSHKGPRVSVASFFANSHDPTEVSSKIYGPIKELTSEENPPVYRDIKVAEYMDNRFKKGHDGSSKLEPFNSLVGVEDCGLVLLLTQGGVHFQRHLLRLLQVAVDEPICSVMRITVVLLRYVVSRPIYVVSSYEGWSEFS*