AlfalfaGEDB | Msa0116670

M. sativa cultivar zhongmu-4 / Msa0116670

KEGG: K02973
GO: -
PFAM: PF00164.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116670	sp\|Q9M5Z9\|RS23_EUPES	99.296	142	1	0	1	142	1	142	4.61e-100	286

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116670	A0A445FI55	100.000	142	0	0	1	142	97	238	1.30e-98	292

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0116670	0.879711	9.973093e-70	-8.615850e-47
Msa0002790	Msa0116670	0.901227	3.315513e-78	-8.615850e-47
Msa0003780	Msa0116670	0.802222	6.213832e-49	-8.615850e-47
Msa0022970	Msa0116670	0.898349	5.787514e-77	-8.615850e-47
Msa0027260	Msa0116670	0.842244	2.910421e-58	-8.615850e-47
Msa0029180	Msa0116670	0.804056	2.593785e-49	-8.615850e-47
Msa0032780	Msa0116670	0.821828	3.280022e-53	-8.615850e-47
Msa0032810	Msa0116670	0.838461	2.837025e-57	-8.615850e-47
Msa0040690	Msa0116670	0.810791	9.671831e-51	-8.615850e-47
Msa0042280	Msa0116670	0.805748	1.149380e-49	-8.615850e-47
Msa0042480	Msa0116670	0.804906	1.724778e-49	-8.615850e-47
Msa0044890	Msa0116670	0.813518	2.457642e-51	-8.615850e-47
Msa0045730	Msa0116670	0.852033	6.020035e-61	-8.615850e-47
Msa0047160	Msa0116670	0.844248	8.501030e-59	-8.615850e-47
Msa0048180	Msa0116670	0.862045	6.688990e-64	-8.615850e-47
Msa0055180	Msa0116670	0.801596	8.355030e-49	-8.615850e-47
Msa0060990	Msa0116670	0.808389	3.172926e-50	-8.615850e-47
Msa0068970	Msa0116670	0.814454	1.528079e-51	-8.615850e-47
Msa0074030	Msa0116670	0.957241	4.357057e-115	-8.615850e-47
Msa0074320	Msa0116670	0.811559	6.590983e-51	-8.615850e-47
Msa0076040	Msa0116670	0.803721	3.045368e-49	-8.615850e-47
Msa0077530	Msa0116670	0.832758	7.874099e-56	-8.615850e-47
Msa0085780	Msa0116670	0.830291	3.190555e-55	-8.615850e-47
Msa0086750	Msa0116670	0.841720	4.003587e-58	-8.615850e-47
Msa0091880	Msa0116670	0.812611	3.886120e-51	-8.615850e-47
Msa0094470	Msa0116670	0.833793	4.348090e-56	-8.615850e-47
Msa0097600	Msa0116670	0.809472	1.860753e-50	-8.615850e-47
Msa0116130	Msa0116670	0.897216	1.743735e-76	-8.615850e-47
Msa0116670	Msa0118710	0.874752	5.282294e-68	-8.615850e-47
Msa0116670	Msa0128860	0.858982	5.666558e-63	-8.615850e-47
Msa0116670	Msa0129660	0.815968	7.044155e-52	-8.615850e-47
Msa0116670	Msa0133540	0.905721	3.182359e-80	-8.615850e-47
Msa0116670	Msa0138920	0.800515	1.390323e-48	-8.615850e-47
Msa0116670	Msa0146340	0.830373	3.046921e-55	-8.615850e-47
Msa0116670	Msa0163760	0.821225	4.520954e-53	-8.615850e-47
Msa0116670	Msa0167480	0.877043	8.621177e-69	-8.615850e-47
Msa0116670	Msa0172900	0.823983	1.032215e-53	-8.615850e-47
Msa0116670	Msa0173530	0.999403	6.472640e-309	-8.615850e-47
Msa0116670	Msa0174730	0.856392	3.319454e-62	-8.615850e-47
Msa0116670	Msa0180020	0.831162	1.951870e-55	-8.615850e-47
Msa0116670	Msa0181490	0.896295	4.230842e-76	-8.615850e-47
Msa0116670	Msa0181610	0.813227	2.847366e-51	-8.615850e-47
Msa0116670	Msa0183090	0.808940	2.418702e-50	-8.615850e-47
Msa0116670	Msa0187690	0.811578	6.526397e-51	-8.615850e-47
Msa0116670	Msa0187930	0.851305	9.680483e-61	-8.615850e-47
Msa0116670	Msa0188350	0.807968	3.900815e-50	-8.615850e-47
Msa0116670	Msa0189700	0.829264	5.672752e-55	-8.615850e-47
Msa0116670	Msa0192230	0.801303	9.595635e-49	-8.615850e-47
Msa0116670	Msa0194540	0.850882	1.273683e-60	-8.615850e-47
Msa0116670	Msa0202020	0.828876	7.043868e-55	-8.615850e-47
Msa0116670	Msa0210360	0.888784	4.343223e-73	-8.615850e-47
Msa0116670	Msa0218720	0.812964	3.251861e-51	-8.615850e-47
Msa0116670	Msa0218830	0.908108	2.451578e-81	-8.615850e-47
Msa0116670	Msa0219120	0.859009	5.562806e-63	-8.615850e-47
Msa0116670	Msa0221030	0.902507	9.036502e-79	-8.615850e-47
Msa0116670	Msa0222730	0.836638	8.320406e-57	-8.615850e-47
Msa0116670	Msa0230490	0.879411	1.274077e-69	-8.615850e-47
Msa0116670	Msa0230520	0.828915	6.893637e-55	-8.615850e-47
Msa0116670	Msa0231100	0.861233	1.184680e-63	-8.615850e-47
Msa0116670	Msa0232010	0.822724	2.032614e-53	-8.615850e-47
Msa0116670	Msa0232080	0.824521	7.716050e-54	-8.615850e-47
Msa0116670	Msa0244780	0.856696	2.701316e-62	-8.615850e-47
Msa0116670	Msa0257450	0.830577	2.716164e-55	-8.615850e-47
Msa0116670	Msa0258850	0.851717	7.401055e-61	-8.615850e-47
Msa0116670	Msa0262480	0.888538	5.402421e-73	-8.615850e-47
Msa0116670	Msa0264010	0.849033	4.192681e-60	-8.615850e-47
Msa0116670	Msa0268130	0.844765	6.173252e-59	-8.615850e-47
Msa0116670	Msa0269180	0.843681	1.206389e-58	-8.615850e-47
Msa0116670	Msa0289580	0.859204	4.861857e-63	-8.615850e-47
Msa0116670	Msa0289610	0.873843	1.074044e-67	-8.615850e-47
Msa0116670	Msa0296250	0.815073	1.114484e-51	-8.615850e-47
Msa0116670	Msa0296720	0.808809	2.580015e-50	-8.615850e-47
Msa0116670	Msa0297830	0.851827	6.884473e-61	-8.615850e-47
Msa0116670	Msa0298200	0.853654	2.071961e-61	-8.615850e-47
Msa0116670	Msa0298990	0.847053	1.474463e-59	-8.615850e-47
Msa0116670	Msa0300350	0.900002	1.132431e-77	-8.615850e-47
Msa0116670	Msa0306690	0.893565	5.586558e-75	-8.615850e-47
Msa0116670	Msa0313100	0.804399	2.201205e-49	-8.615850e-47
Msa0116670	Msa0317910	0.817951	2.525623e-52	-8.615850e-47
Msa0116670	Msa0327300	0.890056	1.391000e-73	-8.615850e-47
Msa0116670	Msa0327330	0.842535	2.436876e-58	-8.615850e-47
Msa0116670	Msa0335840	0.853861	1.805470e-61	-8.615850e-47
Msa0116670	Msa0336010	0.804144	2.486788e-49	-8.615850e-47
Msa0116670	Msa0337670	0.800430	1.446468e-48	-8.615850e-47
Msa0116670	Msa0348830	0.881318	2.652665e-70	-8.615850e-47
Msa0116670	Msa0348990	0.807797	4.240303e-50	-8.615850e-47
Msa0116670	Msa0359040	0.818616	1.786633e-52	-8.615850e-47
Msa0116670	Msa0369450	0.807121	5.899826e-50	-8.615850e-47
Msa0116670	Msa0393370	0.802332	5.899329e-49	-8.615850e-47
Msa0116670	Msa0434920	0.805258	1.456184e-49	-8.615850e-47
Msa0116670	Msa0443390	0.899682	1.556445e-77	-8.615850e-47
Msa0116670	Msa0471880	0.831337	1.767259e-55	-8.615850e-47
Msa0116670	Msa0481850	0.840534	8.207340e-58	-8.615850e-47
Msa0116670	Msa0483110	0.841361	4.977829e-58	-8.615850e-47
Msa0116670	Msa0486070	0.825711	4.038537e-54	-8.615850e-47
Msa0116670	Msa0488820	0.805732	1.158286e-49	-8.615850e-47
Msa0116670	Msa0526540	0.887462	1.396549e-72	-8.615850e-47
Msa0116670	Msa0527150	0.843671	1.214165e-58	-8.615850e-47
Msa0116670	Msa0531650	0.816614	5.049521e-52	-8.615850e-47
Msa0116670	Msa0534750	0.845279	4.482829e-59	-8.615850e-47
Msa0116670	Msa0571920	0.847337	1.232326e-59	-8.615850e-47
Msa0116670	Msa0576940	0.885359	8.702261e-72	-8.615850e-47
Msa0116670	Msa0581110	0.830699	2.535376e-55	-8.615850e-47
Msa0116670	Msa0584030	0.829060	6.357319e-55	-8.615850e-47
Msa0116670	Msa0584260	0.824908	6.254134e-54	-8.615850e-47
Msa0116670	Msa0586420	0.826420	2.739939e-54	-8.615850e-47
Msa0116670	Msa0588360	0.839254	1.768468e-57	-8.615850e-47
Msa0116670	Msa0603320	0.838360	3.011527e-57	-8.615850e-47
Msa0116670	Msa0615440	0.806520	7.905805e-50	-8.615850e-47
Msa0116670	Msa0615580	0.886939	2.210337e-72	-8.615850e-47
Msa0116670	Msa0617540	0.804821	1.797334e-49	-8.615850e-47
Msa0116670	Msa0621950	0.828488	8.741627e-55	-8.615850e-47
Msa0116670	Msa0622750	0.847161	1.377528e-59	-8.615850e-47
Msa0116670	Msa0623200	0.863461	2.448827e-64	-8.615850e-47
Msa0116670	Msa0631250	0.841545	4.452587e-58	-8.615850e-47
Msa0116670	Msa0654870	0.829297	5.569313e-55	-8.615850e-47
Msa0116670	Msa0661300	0.815158	1.066939e-51	-8.615850e-47
Msa0116670	Msa0666230	0.876125	1.790404e-68	-8.615850e-47
Msa0116670	Msa0687870	0.803594	3.235816e-49	-8.615850e-47
Msa0116670	Msa0698490	0.806790	6.930621e-50	-8.615850e-47
Msa0116670	Msa0698660	0.807848	4.135467e-50	-8.615850e-47
Msa0116670	Msa0698780	0.825526	4.467432e-54	-8.615850e-47
Msa0116670	Msa0705800	0.817650	2.954786e-52	-8.615850e-47
Msa0116670	Msa0709780	0.822893	1.856762e-53	-8.615850e-47
Msa0116670	Msa0712610	0.860657	1.772288e-63	-8.615850e-47
Msa0116670	Msa0717380	0.867644	1.175897e-65	-8.615850e-47
Msa0116670	Msa0719420	0.828521	8.582402e-55	-8.615850e-47
Msa0116670	Msa0729200	0.907419	5.174897e-81	-8.615850e-47
Msa0116670	Msa0738100	0.856126	3.971709e-62	-8.615850e-47
Msa0116670	Msa0752910	0.811547	6.627875e-51	-8.615850e-47
Msa0116670	Msa0756250	0.821941	3.088132e-53	-8.615850e-47
Msa0116670	Msa0766080	0.843733	1.168617e-58	-8.615850e-47
Msa0116670	Msa0769590	0.910597	1.567011e-82	-8.615850e-47
Msa0116670	Msa0780490	0.820816	5.616713e-53	-8.615850e-47
Msa0116670	Msa0781080	0.839446	1.577268e-57	-8.615850e-47
Msa0116670	Msa0783630	0.846136	2.625183e-59	-8.615850e-47
Msa0116670	Msa0785130	0.903707	2.626043e-79	-8.615850e-47
Msa0116670	Msa0789680	0.827603	1.427881e-54	-8.615850e-47
Msa0116670	Msa0792420	0.802784	4.759627e-49	-8.615850e-47
Msa0116670	Msa0799830	0.833665	4.681276e-56	-8.615850e-47
Msa0116670	Msa0802410	0.805585	1.243432e-49	-8.615850e-47
Msa0116670	Msa0806880	0.913671	4.697623e-84	-8.615850e-47
Msa0116670	Msa0817540	0.893492	5.980069e-75	-8.615850e-47
Msa0116670	Msa0827380	0.838409	2.925386e-57	-8.615850e-47
Msa0116670	Msa0830090	0.803510	3.368860e-49	-8.615850e-47
Msa0116670	Msa0844220	-0.833835	4.244907e-56	-8.615850e-47
Msa0116670	Msa0867060	0.836201	1.074847e-56	-8.615850e-47
Msa0116670	Msa0876170	0.856538	3.007235e-62	-8.615850e-47
Msa0116670	Msa0881290	0.830490	2.852463e-55	-8.615850e-47
Msa0116670	Msa0888810	0.850809	1.335936e-60	-8.615850e-47
Msa0116670	Msa0913240	0.812364	4.401202e-51	-8.615850e-47
Msa0116670	Msa0930490	0.823064	1.693668e-53	-8.615850e-47
Msa0116670	Msa0945480	0.873203	1.763775e-67	-8.615850e-47
Msa0116670	Msa0953310	0.842875	1.979209e-58	-8.615850e-47
Msa0116670	Msa0970110	0.809080	2.257744e-50	-8.615850e-47
Msa0116670	Msa1006840	0.825668	4.133587e-54	-8.615850e-47
Msa0116670	Msa1019240	0.899736	1.474971e-77	-8.615850e-47
Msa0116670	Msa1019260	0.904672	9.611143e-80	-8.615850e-47
Msa0116670	Msa1037290	0.825541	4.430751e-54	-8.615850e-47
Msa0116670	Msa1039520	0.852829	3.571288e-61	-8.615850e-47
Msa0116670	Msa1043690	0.801423	9.069244e-49	-8.615850e-47
Msa0116670	Msa1072710	0.870679	1.216161e-66	-8.615850e-47
Msa0116670	Msa1078870	0.878122	3.623990e-69	-8.615850e-47
Msa0116670	Msa1078980	0.834963	2.211039e-56	-8.615850e-47
Msa0116670	Msa1080350	0.856591	2.901504e-62	-8.615850e-47
Msa0116670	Msa1081150	0.808621	2.829949e-50	-8.615850e-47
Msa0116670	Msa1088490	0.856610	2.864641e-62	-8.615850e-47
Msa0116670	Msa1094380	0.800709	1.269303e-48	-8.615850e-47
Msa0116670	Msa1100710	0.837574	4.796449e-57	-8.615850e-47
Msa0116670	Msa1104140	0.858105	1.035380e-62	-8.615850e-47
Msa0116670	Msa1104210	0.898929	3.277086e-77	-8.615850e-47
Msa0116670	Msa1122820	0.815663	8.235918e-52	-8.615850e-47
Msa0116670	Msa1125860	0.854787	9.752520e-62	-8.615850e-47
Msa0116670	Msa1126060	0.851870	6.694577e-61	-8.615850e-47
Msa0116670	Msa1126470	0.839182	1.845886e-57	-8.615850e-47
Msa0116670	Msa1126510	0.845671	3.512158e-59	-8.615850e-47
Msa0116670	Msa1126520	0.817838	2.678542e-52	-8.615850e-47
Msa0116670	Msa1126830	0.835308	1.809436e-56	-8.615850e-47
Msa0116670	Msa1135890	0.816044	6.774465e-52	-8.615850e-47
Msa0116670	Msa1138870	0.811558	6.591441e-51	-8.615850e-47
Msa0116670	Msa1165780	0.845141	4.886664e-59	-8.615850e-47
Msa0116670	Msa1166860	0.854110	1.530562e-61	-8.615850e-47
Msa0116670	Msa1166870	0.888048	8.337705e-73	-8.615850e-47
Msa0116670	Msa1167540	0.860979	1.415861e-63	-8.615850e-47
Msa0116670	Msa1169180	0.839019	2.035362e-57	-8.615850e-47
Msa0116670	Msa1179980	0.802415	5.672294e-49	-8.615850e-47
Msa0116670	Msa1183450	0.836826	7.452364e-57	-8.615850e-47
Msa0116670	Msa1186980	0.820254	7.558480e-53	-8.615850e-47
Msa0116670	Msa1188260	0.800315	1.527049e-48	-8.615850e-47
Msa0116670	Msa1195300	0.829946	3.873269e-55	-8.615850e-47
Msa0116670	Msa1208020	0.822234	2.641450e-53	-8.615850e-47
Msa0116670	Msa1215820	0.877481	6.071320e-69	-8.615850e-47
Msa0116670	Msa1230580	0.821298	4.349999e-53	-8.615850e-47
Msa0116670	Msa1241190	0.834917	2.271624e-56	-8.615850e-47
Msa0116670	Msa1257510	0.834808	2.419146e-56	-8.615850e-47
Msa0116670	Msa1258710	0.816090	6.614839e-52	-8.615850e-47
Msa0116670	Msa1260530	0.855845	4.797742e-62	-8.615850e-47
Msa0116670	Msa1262890	0.805125	1.552035e-49	-8.615850e-47
Msa0116670	Msa1265630	0.841776	3.870488e-58	-8.615850e-47
Msa0116670	Msa1266060	0.833477	5.214485e-56	-8.615850e-47
Msa0116670	Msa1270620	0.804610	1.988567e-49	-8.615850e-47
Msa0116670	Msa1270690	0.800534	1.378051e-48	-8.615850e-47
Msa0116670	Msa1273340	0.817608	3.019239e-52	-8.615850e-47
Msa0116670	Msa1295150	0.812275	4.600661e-51	-8.615850e-47
Msa0116670	Msa1299590	0.844526	7.157443e-59	-8.615850e-47
Msa0116670	Msa1305050	0.827316	1.673559e-54	-8.615850e-47
Msa0116670	Msa1311400	0.847795	9.225955e-60	-8.615850e-47
Msa0116670	Msa1329300	0.812615	3.878727e-51	-8.615850e-47
Msa0116670	Msa1331250	0.802941	4.418474e-49	-8.615850e-47
Msa0116670	Msa1331710	0.859025	5.499741e-63	-8.615850e-47
Msa0116670	Msa1332250	0.894646	2.026677e-75	-8.615850e-47
Msa0116670	Msa1338190	0.867991	9.094190e-66	-8.615850e-47
Msa0116670	Msa1343260	0.861396	1.057010e-63	-8.615850e-47
Msa0116670	Msa1349570	0.909969	3.160847e-82	-8.615850e-47
Msa0116670	Msa1356790	0.859277	4.622664e-63	-8.615850e-47
Msa0116670	Msa1357350	0.803176	3.950141e-49	-8.615850e-47
Msa0116670	Msa1362790	0.843567	1.294591e-58	-8.615850e-47
Msa0116670	Msa1363330	0.885645	6.800552e-72	-8.615850e-47
Msa0116670	Msa1366180	0.853378	2.486555e-61	-8.615850e-47
Msa0116670	Msa1368920	0.822171	2.732187e-53	-8.615850e-47
Msa0116670	Msa1369190	0.882836	7.453753e-71	-8.615850e-47
Msa0116670	Msa1374240	0.818713	1.698357e-52	-8.615850e-47
Msa0116670	Msa1379760	0.862966	3.484164e-64	-8.615850e-47
Msa0116670	Msa1386600	0.885609	7.018445e-72	-8.615850e-47
Msa0116670	Msa1387410	0.858727	6.755673e-63	-8.615850e-47
Msa0116670	Msa1392590	0.833151	6.287892e-56	-8.615850e-47
Msa0116670	Msa1394290	0.809858	1.536799e-50	-8.615850e-47
Msa0116670	Msa1397100	0.837546	4.875665e-57	-8.615850e-47
Msa0116670	Msa1401390	0.830518	2.807983e-55	-8.615850e-47
Msa0116670	Msa1403910	0.839917	1.189486e-57	-8.615850e-47
Msa0116670	Msa1406080	0.833201	6.108880e-56	-8.615850e-47
Msa0116670	Msa1407070	0.808394	3.165085e-50	-8.615850e-47
Msa0116670	Msa1410440	0.832143	1.118147e-55	-8.615850e-47
Msa0116670	Msa1413500	0.915207	7.741358e-85	-8.615850e-47
Msa0116670	Msa1418770	0.827743	1.321865e-54	-8.615850e-47
Msa0116670	Msa1426120	0.880558	4.971786e-70	-8.615850e-47
Msa0116670	Msa1426370	0.894203	3.074768e-75	-8.615850e-47
Msa0116670	Msa1426490	0.909013	9.100250e-82	-8.615850e-47
Msa0116670	Msa1427560	0.883729	3.504990e-71	-8.615850e-47
Msa0116670	Msa1432700	0.801909	7.209116e-49	-8.615850e-47
Msa0116670	Msa1433310	0.828539	8.500143e-55	-8.615850e-47
Msa0116670	Msa1448690	0.848781	4.923224e-60	-8.615850e-47
Msa0116670	Msa1450280	0.851681	7.575631e-61	-8.615850e-47
Msa0116670	Msa1456050	0.813802	2.128603e-51	-8.615850e-47
Msa0116670	Msa1462860	0.809257	2.069625e-50	-8.615850e-47
Msa0116670	Msa1465260	0.848330	6.565965e-60	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116670	MtrunA17_Chr1g0181621	100.000	142	0	0	1	142	1	142	5.68e-102	288
Msa0116670	MtrunA17_Chr7g0263691	93.662	142	9	0	1	142	1	142	1.56e-94	269
Msa0116670	MtrunA17_Chr7g0239631	53.623	69	29	2	42	109	15	81	5.82e-16	68.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116670	AT5G02960.1	95.070	142	7	0	1	142	1	142	8.13e-95	270
Msa0116670	AT3G09680.1	92.958	142	10	0	1	142	1	142	1.41e-91	262

Find 71 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGGTTGTCTTACTTGTATTT+TGG	0.189561	1_3:-35764394	Msa0116670:three_prime_UTR
GCCAGATAATTCGAAAATTA+TGG	0.265240	1_3:+35764354	None:intergenic
CAGGTTTCATTTCGGAGATT+AGG	0.266715	1_3:-35766268	Msa0116670:five_prime_UTR
TTCAAAGTTGTGAAGGTCTC+TGG	0.336661	1_3:-35764652	Msa0116670:CDS
ACACTTACGAATAGCTGAAT+TGG	0.338181	1_3:+35764973	None:intergenic
AGGTTTCATTTCGGAGATTA+GGG	0.349817	1_3:-35766267	Msa0116670:five_prime_UTR
TCTCCTTCTTCTCCTTGAAA+AGG	0.352760	1_3:+35764614	None:intergenic
AAGTAAGACAACCAGATGAT+AGG	0.359787	1_3:+35764403	None:intergenic
TGCTTCCTGTTGAGTGGGCA+TGG	0.379548	1_3:-35764524	Msa0116670:three_prime_UTR
ATTCCACAAATCTAAGATCT+TGG	0.379899	1_3:+35764589	None:intergenic
TGACTGGTTAACACTCTGTT+TGG	0.391356	1_3:-35764263	Msa0116670:three_prime_UTR
TAAATCCTCAGGTTTCATTT+CGG	0.393675	1_3:-35766276	None:intergenic
TGTGTTGAGCTCGGAGGTTA+TGG	0.405375	1_3:+35766203	None:intergenic
CATGCTGTGGGAGATATTCC+TGG	0.414411	1_3:-35764682	Msa0116670:CDS
CAGCTATTCGTAAGTGTGCC+AGG	0.416301	1_3:-35764967	Msa0116670:CDS
CTCCTTCTTCTCCTTGAAAA+GGG	0.418297	1_3:+35764615	None:intergenic
TGTGAATCTTCCCTATCATC+TGG	0.424196	1_3:-35764414	Msa0116670:three_prime_UTR
AATGCCCATGCCCACTCAAC+AGG	0.433793	1_3:+35764519	None:intergenic
GTAGTTTAGACAACCATCAT+TGG	0.437937	1_3:+35764901	None:intergenic
AAGATCTTAGATTTGTGGAA+TGG	0.444307	1_3:-35764587	Msa0116670:exon
GCTGCCTTTGTTCCCAATGA+TGG	0.449096	1_3:-35764914	Msa0116670:CDS
AGATCTTAGATTTGTGGAAT+GGG	0.462917	1_3:-35764586	Msa0116670:exon
TCATACAAGAAGTCTCATCT+TGG	0.473075	1_3:-35765171	Msa0116670:CDS
CACTTACGAATAGCTGAATT+GGG	0.473089	1_3:+35764974	None:intergenic
AGTAAGACAACCAGATGATA+GGG	0.475784	1_3:+35764404	None:intergenic
GGAGTTACCCCATGGCTGCT+TGG	0.477148	1_3:+35766174	None:intergenic
GCTTCCTGTTGAGTGGGCAT+GGG	0.479296	1_3:-35764523	Msa0116670:three_prime_UTR
TCAAAGTTGTGAAGGTCTCT+GGG	0.485775	1_3:-35764651	Msa0116670:CDS
TGCTGGTTCTTCCCACGCAA+AGG	0.487634	1_3:-35765127	Msa0116670:CDS
TGGTCCTTGTGTGTTGAGCT+CGG	0.488561	1_3:+35766194	None:intergenic
CTCACCGCAGGAGGCAAAGG+TGG	0.491520	1_3:-35765203	Msa0116670:CDS
TAGTTTAGACAACCATCATT+GGG	0.495609	1_3:+35764902	None:intergenic
GCTGGTTCTTCCCACGCAAA+GGG	0.497054	1_3:-35765126	Msa0116670:CDS
ATTGCTGGATTTGGAAGAAA+GGG	0.499669	1_3:-35764706	Msa0116670:CDS
GCGTGGGAAGAACCAGCAAA+AGG	0.504542	1_3:+35765132	None:intergenic
CATACAAGAAGTCTCATCTT+GGG	0.508352	1_3:-35765170	Msa0116670:CDS
GATTGCTGGATTTGGAAGAA+AGG	0.508603	1_3:-35764707	Msa0116670:CDS
AGGGTACAACTAATCAAGAA+TGG	0.513747	1_3:-35764947	Msa0116670:CDS
TATAGGAAGACACATGGAAT+GGG	0.517444	1_3:-35765246	Msa0116670:intron
AAGCCAAGATCTTAGATTTG+TGG	0.520253	1_3:-35764592	Msa0116670:exon
CAGCCCACCTTTGCCTCCTG+CGG	0.522174	1_3:+35765199	None:intergenic
ACACAAGGACCAAGCAGCCA+TGG	0.530103	1_3:-35766183	Msa0116670:exon
CGAGGACAATTCCCTTTGCG+TGG	0.534957	1_3:+35765115	None:intergenic
GATAATTCGAAAATTATGGT+TGG	0.538066	1_3:+35764358	None:intergenic
CACAAGGACCAAGCAGCCAT+GGG	0.544659	1_3:-35766182	Msa0116670:exon
GCAAGCTGAAGTCTCACCGC+AGG	0.557712	1_3:-35765215	Msa0116670:CDS
AGTCTCACCGCAGGAGGCAA+AGG	0.562641	1_3:-35765206	Msa0116670:CDS
GATAGGGAAGATTCACAAGT+AGG	0.567955	1_3:+35764420	None:intergenic
AGCTGAAGTCTCACCGCAGG+AGG	0.569090	1_3:-35765212	Msa0116670:CDS
AGTCTCATCTTGGGAATGAG+TGG	0.571456	1_3:-35765161	Msa0116670:CDS
GAGCAGCAACAGCACCAACA+CGG	0.572129	1_3:+35766234	None:intergenic
ATTCTTGATTAGTTGTACCC+TGG	0.574592	1_3:+35764949	None:intergenic
CTATAGGAAGACACATGGAA+TGG	0.575092	1_3:-35765247	Msa0116670:intron
ACAACTTTGAATCTAACTCC+AGG	0.579252	1_3:+35764664	None:intergenic
GTTGAGCTCGGAGGTTATGG+AGG	0.583331	1_3:+35766206	None:intergenic
TGGAAGAAAGGGTCATGCTG+TGG	0.584767	1_3:-35764695	Msa0116670:CDS
GGAAGAAAGGGTCATGCTGT+GGG	0.588458	1_3:-35764694	Msa0116670:CDS
TCACCGCAGGAGGCAAAGGT+GGG	0.600190	1_3:-35765202	Msa0116670:CDS
AGTTAGATTCAAAGTTGTGA+AGG	0.600905	1_3:-35764659	Msa0116670:CDS
ACAACCATCATTGGGAACAA+AGG	0.603558	1_3:+35764910	None:intergenic
ACCTCCGAGCTCAACACACA+AGG	0.619600	1_3:-35766198	Msa0116670:five_prime_UTR
ATTGTTAACAGAAAATTCAG+TGG	0.620701	1_3:+35764332	None:intergenic
TTATGGTTGGAACTATGTCA+TGG	0.623955	1_3:+35764371	None:intergenic
GAGGACAATTCCCTTTGCGT+GGG	0.632164	1_3:+35765116	None:intergenic
AGCTATTCGTAAGTGTGCCA+GGG	0.637371	1_3:-35764966	Msa0116670:CDS
CTTGTCTATAGGAAGACACA+TGG	0.644023	1_3:-35765252	Msa0116670:intron
TTGAGCTCGGAGGTTATGGA+GGG	0.646209	1_3:+35766207	None:intergenic
AATCTCCGAAATGAAACCTG+AGG	0.648840	1_3:+35766271	None:intergenic
CAAAGTTGTGAAGGTCTCTG+GGG	0.715188	1_3:-35764650	Msa0116670:CDS
TCCTTGTGTGTTGAGCTCGG+AGG	0.735284	1_3:+35766197	None:intergenic
ACAAGGACCAAGCAGCCATG+GGG	0.747559	1_3:-35766181	Msa0116670:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTATTTTGTTAGTATTT+AGG	-	chr1_3:35764455-35764474	Msa0116670:three_prime_UTR	10.0%
!!!	AATTTATTTTGTTAGTATTT+AGG	-	chr1_3:35764455-35764474	Msa0116670:three_prime_UTR	10.0%
!!!	AATTTGAAACTTGAATATTT+AGG	-	chr1_3:35764736-35764755	Msa0116670:intron	15.0%
!!	ATGAATAATTCATATGTATA+AGG	+	chr1_3:35764871-35764890	None:intergenic	15.0%
!!	TCAAATAAAATTCTAGTAAA+AGG	+	chr1_3:35765449-35765468	None:intergenic	15.0%
!!!	AATTTGAAACTTGAATATTT+AGG	-	chr1_3:35764736-35764755	Msa0116670:intron	15.0%
!!	ATGAATAATTCATATGTATA+AGG	+	chr1_3:35764871-35764890	None:intergenic	15.0%
!!	TCAAATAAAATTCTAGTAAA+AGG	+	chr1_3:35765449-35765468	None:intergenic	15.0%
!!!	TTAGTATTTAGGTTTCATTT+TGG	-	chr1_3:35764466-35764485	Msa0116670:three_prime_UTR	20.0%
!!!	TATTTATATTCGATTTGGAA+CGG	+	chr1_3:35764497-35764516	None:intergenic	20.0%
!!	TAGCATATTTATATTCGATT+TGG	+	chr1_3:35764502-35764521	None:intergenic	20.0%
!!!	CTTTTGTTTAGTTTAGTTTA+TGG	-	chr1_3:35764542-35764561	Msa0116670:three_prime_UTR	20.0%
!!!	ATTTGTTAGTTTATGACTTA+TGG	-	chr1_3:35764632-35764651	Msa0116670:CDS	20.0%
!!!	TTTGTTAGTTTATGACTTAT+GGG	-	chr1_3:35764633-35764652	Msa0116670:CDS	20.0%
!!	TATCTAAAAATGCTATAAGT+TGG	-	chr1_3:35764955-35764974	Msa0116670:CDS	20.0%
!!!	GCAAAAATCAACATAATTTT+GGG	+	chr1_3:35765965-35765984	None:intergenic	20.0%
!!!	AGCAAAAATCAACATAATTT+TGG	+	chr1_3:35765966-35765985	None:intergenic	20.0%
!!!	TTTTGTATCTTGTTATTTTG+TGG	-	chr1_3:35766018-35766037	Msa0116670:intron	20.0%
!!!	TTAGTATTTAGGTTTCATTT+TGG	-	chr1_3:35764466-35764485	Msa0116670:three_prime_UTR	20.0%
!!!	TATTTATATTCGATTTGGAA+CGG	+	chr1_3:35764497-35764516	None:intergenic	20.0%
!!	TAGCATATTTATATTCGATT+TGG	+	chr1_3:35764502-35764521	None:intergenic	20.0%
!!!	CTTTTGTTTAGTTTAGTTTA+TGG	-	chr1_3:35764542-35764561	Msa0116670:three_prime_UTR	20.0%
!!!	ATTTGTTAGTTTATGACTTA+TGG	-	chr1_3:35764632-35764651	Msa0116670:CDS	20.0%
!!!	TTTGTTAGTTTATGACTTAT+GGG	-	chr1_3:35764633-35764652	Msa0116670:CDS	20.0%
!!	TATCTAAAAATGCTATAAGT+TGG	-	chr1_3:35764955-35764974	Msa0116670:CDS	20.0%
!!!	GCAAAAATCAACATAATTTT+GGG	+	chr1_3:35765965-35765984	None:intergenic	20.0%
!!!	AGCAAAAATCAACATAATTT+TGG	+	chr1_3:35765966-35765985	None:intergenic	20.0%
!!!	TTTTGTATCTTGTTATTTTG+TGG	-	chr1_3:35766018-35766037	Msa0116670:intron	20.0%
!!!	TCCTTATGAATATCGATTTT+GGG	+	chr1_3:35764415-35764434	None:intergenic	25.0%
!!!	ATCCTTATGAATATCGATTT+TGG	+	chr1_3:35764416-35764435	None:intergenic	25.0%
!	CTGATTAAATTTGTAGTGTT+TGG	-	chr1_3:35764825-35764844	Msa0116670:intron	25.0%
!!!	CTTTTTGTTGTAAATGACTT+AGG	-	chr1_3:35765123-35765142	Msa0116670:CDS	25.0%
!!!	GATTGTTGTTTTATTTACAG+TGG	-	chr1_3:35765493-35765512	Msa0116670:intron	25.0%
!!!	TTTTATTTACAGTGGTATTG+AGG	-	chr1_3:35765501-35765520	Msa0116670:intron	25.0%
!!!	ATTTTTTCACACTTACTCTT+AGG	-	chr1_3:35766047-35766066	Msa0116670:intron	25.0%
!	GATAATTCGAAAATTATGGT+TGG	+	chr1_3:35766151-35766170	None:intergenic	25.0%
!!	ACCATAATTTTCGAATTATC+TGG	-	chr1_3:35766151-35766170	Msa0116670:intron	25.0%
!	ATTGTTAACAGAAAATTCAG+TGG	+	chr1_3:35766177-35766196	None:intergenic	25.0%
!!!	TCCTTATGAATATCGATTTT+GGG	+	chr1_3:35764415-35764434	None:intergenic	25.0%
!!!	ATCCTTATGAATATCGATTT+TGG	+	chr1_3:35764416-35764435	None:intergenic	25.0%
!	CTGATTAAATTTGTAGTGTT+TGG	-	chr1_3:35764825-35764844	Msa0116670:intron	25.0%
!!!	CTTTTTGTTGTAAATGACTT+AGG	-	chr1_3:35765123-35765142	Msa0116670:CDS	25.0%
!!!	GATTGTTGTTTTATTTACAG+TGG	-	chr1_3:35765493-35765512	Msa0116670:intron	25.0%
!!!	TTTTATTTACAGTGGTATTG+AGG	-	chr1_3:35765501-35765520	Msa0116670:intron	25.0%
!!!	ATTTTTTCACACTTACTCTT+AGG	-	chr1_3:35766047-35766066	Msa0116670:intron	25.0%
!	GATAATTCGAAAATTATGGT+TGG	+	chr1_3:35766151-35766170	None:intergenic	25.0%
!!	ACCATAATTTTCGAATTATC+TGG	-	chr1_3:35766151-35766170	Msa0116670:intron	25.0%
!	ATTGTTAACAGAAAATTCAG+TGG	+	chr1_3:35766177-35766196	None:intergenic	25.0%
	TGCAATAGAAAATGCAGAAA+AGG	+	chr1_3:35764365-35764384	None:intergenic	30.0%
!!!	ATGAATATCGATTTTGGGAA+TGG	+	chr1_3:35764410-35764429	None:intergenic	30.0%
	TCCCAAAATCGATATTCATA+AGG	-	chr1_3:35764411-35764430	Msa0116670:three_prime_UTR	30.0%
!!	GTATTTAGGTTTCATTTTGG+TGG	-	chr1_3:35764469-35764488	Msa0116670:three_prime_UTR	30.0%
!!	TCTATTTTTCGTTCTTCTTG+TGG	-	chr1_3:35764669-35764688	Msa0116670:CDS	30.0%
!	GTAAGCTTCTGAAAAAATGA+CGG	-	chr1_3:35764990-35765009	Msa0116670:CDS	30.0%
	GTCTTCAACACTTTGATATT+AGG	-	chr1_3:35765145-35765164	Msa0116670:CDS	30.0%
	TTCAACACTTTGATATTAGG+TGG	-	chr1_3:35765148-35765167	Msa0116670:CDS	30.0%
	TCAACACTTTGATATTAGGT+GGG	-	chr1_3:35765149-35765168	Msa0116670:CDS	30.0%
!	AAATCTTCTGACTTGTCTAT+AGG	-	chr1_3:35765243-35765262	Msa0116670:CDS	30.0%
	TAGTTTAGACAACCATCATT+GGG	+	chr1_3:35765607-35765626	None:intergenic	30.0%
!	TCCTTGCTCATATTTTCTAT+TGG	-	chr1_3:35765645-35765664	Msa0116670:intron	30.0%
	ACCAATAGAAAATATGAGCA+AGG	+	chr1_3:35765649-35765668	None:intergenic	30.0%
	TGACTTTAAACTGATATGTC+TGG	-	chr1_3:35765677-35765696	Msa0116670:intron	30.0%
	AGTTAGATTCAAAGTTGTGA+AGG	-	chr1_3:35765847-35765866	Msa0116670:intron	30.0%
!	ATTCCACAAATCTAAGATCT+TGG	+	chr1_3:35765920-35765939	None:intergenic	30.0%
	AAGATCTTAGATTTGTGGAA+TGG	-	chr1_3:35765919-35765938	Msa0116670:intron	30.0%
	AGATCTTAGATTTGTGGAAT+GGG	-	chr1_3:35765920-35765939	Msa0116670:intron	30.0%
!	TGGTTGTCTTACTTGTATTT+TGG	-	chr1_3:35766112-35766131	Msa0116670:intron	30.0%
	GCCAGATAATTCGAAAATTA+TGG	+	chr1_3:35766155-35766174	None:intergenic	30.0%
	TGCAATAGAAAATGCAGAAA+AGG	+	chr1_3:35764365-35764384	None:intergenic	30.0%
!!!	ATGAATATCGATTTTGGGAA+TGG	+	chr1_3:35764410-35764429	None:intergenic	30.0%
	TCCCAAAATCGATATTCATA+AGG	-	chr1_3:35764411-35764430	Msa0116670:three_prime_UTR	30.0%
!!	GTATTTAGGTTTCATTTTGG+TGG	-	chr1_3:35764469-35764488	Msa0116670:three_prime_UTR	30.0%
!!	TCTATTTTTCGTTCTTCTTG+TGG	-	chr1_3:35764669-35764688	Msa0116670:CDS	30.0%
!	GTAAGCTTCTGAAAAAATGA+CGG	-	chr1_3:35764990-35765009	Msa0116670:CDS	30.0%
	GTCTTCAACACTTTGATATT+AGG	-	chr1_3:35765145-35765164	Msa0116670:CDS	30.0%
	TTCAACACTTTGATATTAGG+TGG	-	chr1_3:35765148-35765167	Msa0116670:CDS	30.0%
	TCAACACTTTGATATTAGGT+GGG	-	chr1_3:35765149-35765168	Msa0116670:CDS	30.0%
!	AAATCTTCTGACTTGTCTAT+AGG	-	chr1_3:35765243-35765262	Msa0116670:CDS	30.0%
	TAGTTTAGACAACCATCATT+GGG	+	chr1_3:35765607-35765626	None:intergenic	30.0%
!	TCCTTGCTCATATTTTCTAT+TGG	-	chr1_3:35765645-35765664	Msa0116670:intron	30.0%
	ACCAATAGAAAATATGAGCA+AGG	+	chr1_3:35765649-35765668	None:intergenic	30.0%
	TGACTTTAAACTGATATGTC+TGG	-	chr1_3:35765677-35765696	Msa0116670:intron	30.0%
	AGTTAGATTCAAAGTTGTGA+AGG	-	chr1_3:35765847-35765866	Msa0116670:intron	30.0%
!	ATTCCACAAATCTAAGATCT+TGG	+	chr1_3:35765920-35765939	None:intergenic	30.0%
	AAGATCTTAGATTTGTGGAA+TGG	-	chr1_3:35765919-35765938	Msa0116670:intron	30.0%
	AGATCTTAGATTTGTGGAAT+GGG	-	chr1_3:35765920-35765939	Msa0116670:intron	30.0%
!	TGGTTGTCTTACTTGTATTT+TGG	-	chr1_3:35766112-35766131	Msa0116670:intron	30.0%
	GCCAGATAATTCGAAAATTA+TGG	+	chr1_3:35766155-35766174	None:intergenic	30.0%
	AGGTTTCATTTCGGAGATTA+GGG	-	chr1_3:35764239-35764258	Msa0116670:three_prime_UTR	35.0%
	AAATGCAGAAAAGGCAATGA+AGG	+	chr1_3:35764356-35764375	None:intergenic	35.0%
!!	GATTTTGGGAATGGTTAACA+GGG	+	chr1_3:35764401-35764420	None:intergenic	35.0%
	TTACACAAACCTAATGCCAT+AGG	+	chr1_3:35764607-35764626	None:intergenic	35.0%
	TAGTTTATGACTTATGGGAC+TGG	-	chr1_3:35764638-35764657	Msa0116670:CDS	35.0%
!	AACTGATAAGCTAGCCTATA+GGG	-	chr1_3:35764784-35764803	Msa0116670:intron	35.0%
	TTCACAACTAAGAGTCTGTT+TGG	+	chr1_3:35765079-35765098	None:intergenic	35.0%
	TTTGATATTAGGTGGGAATC+AGG	-	chr1_3:35765156-35765175	Msa0116670:CDS	35.0%
	TATAGGAAGACACATGGAAT+GGG	-	chr1_3:35765260-35765279	Msa0116670:intron	35.0%
	TCATACAAGAAGTCTCATCT+TGG	-	chr1_3:35765335-35765354	Msa0116670:intron	35.0%
	CATACAAGAAGTCTCATCTT+GGG	-	chr1_3:35765336-35765355	Msa0116670:intron	35.0%
	CACTTACGAATAGCTGAATT+GGG	+	chr1_3:35765535-35765554	None:intergenic	35.0%
	ACACTTACGAATAGCTGAAT+TGG	+	chr1_3:35765536-35765555	None:intergenic	35.0%
!	ATTCTTGATTAGTTGTACCC+TGG	+	chr1_3:35765560-35765579	None:intergenic	35.0%
	AGGGTACAACTAATCAAGAA+TGG	-	chr1_3:35765559-35765578	Msa0116670:intron	35.0%
	GTAGTTTAGACAACCATCAT+TGG	+	chr1_3:35765608-35765627	None:intergenic	35.0%
!!!	GAAGTTTTGATTGCTGGATT+TGG	-	chr1_3:35765791-35765810	Msa0116670:intron	35.0%
	ATTGCTGGATTTGGAAGAAA+GGG	-	chr1_3:35765800-35765819	Msa0116670:intron	35.0%
	ACAACTTTGAATCTAACTCC+AGG	+	chr1_3:35765845-35765864	None:intergenic	35.0%
	AAGCCAAGATCTTAGATTTG+TGG	-	chr1_3:35765914-35765933	Msa0116670:intron	35.0%
!	ATTTTTGCTTCCTGTTGAGT+GGG	-	chr1_3:35765977-35765996	Msa0116670:intron	35.0%
	AGTAAGACAACCAGATGATA+GGG	+	chr1_3:35766105-35766124	None:intergenic	35.0%
	AAGTAAGACAACCAGATGAT+AGG	+	chr1_3:35766106-35766125	None:intergenic	35.0%
	TTATGGTTGGAACTATGTCA+TGG	+	chr1_3:35766138-35766157	None:intergenic	35.0%
!!!	CATTGACTTGTTTTGTTGAC+TGG	-	chr1_3:35766227-35766246	Msa0116670:five_prime_UTR	35.0%
	AGGTTTCATTTCGGAGATTA+GGG	-	chr1_3:35764239-35764258	Msa0116670:three_prime_UTR	35.0%
	AAATGCAGAAAAGGCAATGA+AGG	+	chr1_3:35764356-35764375	None:intergenic	35.0%
!!	GATTTTGGGAATGGTTAACA+GGG	+	chr1_3:35764401-35764420	None:intergenic	35.0%
	TTACACAAACCTAATGCCAT+AGG	+	chr1_3:35764607-35764626	None:intergenic	35.0%
	TAGTTTATGACTTATGGGAC+TGG	-	chr1_3:35764638-35764657	Msa0116670:CDS	35.0%
!	AACTGATAAGCTAGCCTATA+GGG	-	chr1_3:35764784-35764803	Msa0116670:intron	35.0%
	TTCACAACTAAGAGTCTGTT+TGG	+	chr1_3:35765079-35765098	None:intergenic	35.0%
	TTTGATATTAGGTGGGAATC+AGG	-	chr1_3:35765156-35765175	Msa0116670:CDS	35.0%
	TATAGGAAGACACATGGAAT+GGG	-	chr1_3:35765260-35765279	Msa0116670:intron	35.0%
	TCATACAAGAAGTCTCATCT+TGG	-	chr1_3:35765335-35765354	Msa0116670:intron	35.0%
	CATACAAGAAGTCTCATCTT+GGG	-	chr1_3:35765336-35765355	Msa0116670:intron	35.0%
	CACTTACGAATAGCTGAATT+GGG	+	chr1_3:35765535-35765554	None:intergenic	35.0%
	ACACTTACGAATAGCTGAAT+TGG	+	chr1_3:35765536-35765555	None:intergenic	35.0%
!	ATTCTTGATTAGTTGTACCC+TGG	+	chr1_3:35765560-35765579	None:intergenic	35.0%
	AGGGTACAACTAATCAAGAA+TGG	-	chr1_3:35765559-35765578	Msa0116670:intron	35.0%
	GTAGTTTAGACAACCATCAT+TGG	+	chr1_3:35765608-35765627	None:intergenic	35.0%
!!!	GAAGTTTTGATTGCTGGATT+TGG	-	chr1_3:35765791-35765810	Msa0116670:intron	35.0%
	ATTGCTGGATTTGGAAGAAA+GGG	-	chr1_3:35765800-35765819	Msa0116670:intron	35.0%
	ACAACTTTGAATCTAACTCC+AGG	+	chr1_3:35765845-35765864	None:intergenic	35.0%
	AAGCCAAGATCTTAGATTTG+TGG	-	chr1_3:35765914-35765933	Msa0116670:intron	35.0%
!	ATTTTTGCTTCCTGTTGAGT+GGG	-	chr1_3:35765977-35765996	Msa0116670:intron	35.0%
	AGTAAGACAACCAGATGATA+GGG	+	chr1_3:35766105-35766124	None:intergenic	35.0%
	AAGTAAGACAACCAGATGAT+AGG	+	chr1_3:35766106-35766125	None:intergenic	35.0%
	TTATGGTTGGAACTATGTCA+TGG	+	chr1_3:35766138-35766157	None:intergenic	35.0%
!!!	CATTGACTTGTTTTGTTGAC+TGG	-	chr1_3:35766227-35766246	Msa0116670:five_prime_UTR	35.0%
	CAGGTTTCATTTCGGAGATT+AGG	-	chr1_3:35764238-35764257	Msa0116670:three_prime_UTR	40.0%
!!	CGATTTTGGGAATGGTTAAC+AGG	+	chr1_3:35764402-35764421	None:intergenic	40.0%
	CCAGCACATTACATACAGAT+AGG	+	chr1_3:35764576-35764595	None:intergenic	40.0%
	CCTATCTGTATGTAATGTGC+TGG	-	chr1_3:35764573-35764592	Msa0116670:three_prime_UTR	40.0%
	GCTAAGTTTCCTATGGCATT+AGG	-	chr1_3:35764595-35764614	Msa0116670:exon	40.0%
!	GAACTGATAAGCTAGCCTAT+AGG	-	chr1_3:35764783-35764802	Msa0116670:intron	40.0%
!	ACTGATAAGCTAGCCTATAG+GGG	-	chr1_3:35764785-35764804	Msa0116670:intron	40.0%
	TTGACTAAAAAAGACCAGCC+TGG	+	chr1_3:35765019-35765038	None:intergenic	40.0%
	CTTGTCTATAGGAAGACACA+TGG	-	chr1_3:35765254-35765273	Msa0116670:intron	40.0%
	CTATAGGAAGACACATGGAA+TGG	-	chr1_3:35765259-35765278	Msa0116670:intron	40.0%
	TCCTCGAAAAGATGTAAGAG+TGG	-	chr1_3:35765408-35765427	Msa0116670:intron	40.0%
!	ACCACTCTTACATCTTTTCG+AGG	+	chr1_3:35765412-35765431	None:intergenic	40.0%
	GATGTAAGAGTGGTTAAGCT+TGG	-	chr1_3:35765418-35765437	Msa0116670:intron	40.0%
	ACAACCATCATTGGGAACAA+AGG	+	chr1_3:35765599-35765618	None:intergenic	40.0%
	ACACACAATGTCACACAAGA+TGG	+	chr1_3:35765753-35765772	None:intergenic	40.0%
!!!	CAGGATGAAGTTTTGATTGC+TGG	-	chr1_3:35765785-35765804	Msa0116670:intron	40.0%
	GATTGCTGGATTTGGAAGAA+AGG	-	chr1_3:35765799-35765818	Msa0116670:intron	40.0%
	TTCAAAGTTGTGAAGGTCTC+TGG	-	chr1_3:35765854-35765873	Msa0116670:intron	40.0%
	TCAAAGTTGTGAAGGTCTCT+GGG	-	chr1_3:35765855-35765874	Msa0116670:intron	40.0%
	CTCCTTCTTCTCCTTGAAAA+GGG	+	chr1_3:35765894-35765913	None:intergenic	40.0%
	TCTCCTTCTTCTCCTTGAAA+AGG	+	chr1_3:35765895-35765914	None:intergenic	40.0%
!	GATTTTTGCTTCCTGTTGAG+TGG	-	chr1_3:35765976-35765995	Msa0116670:intron	40.0%
	GATAGGGAAGATTCACAAGT+AGG	+	chr1_3:35766089-35766108	None:intergenic	40.0%
	TGTGAATCTTCCCTATCATC+TGG	-	chr1_3:35766092-35766111	Msa0116670:intron	40.0%
!	TGACTGGTTAACACTCTGTT+TGG	-	chr1_3:35766243-35766262	Msa0116670:five_prime_UTR	40.0%
	AATCTCCGAAATGAAACCTG+AGG	+	chr1_3:35764238-35764257	None:intergenic	40.0%
	CAGGTTTCATTTCGGAGATT+AGG	-	chr1_3:35764238-35764257	Msa0116670:three_prime_UTR	40.0%
!!	CGATTTTGGGAATGGTTAAC+AGG	+	chr1_3:35764402-35764421	None:intergenic	40.0%
	CCAGCACATTACATACAGAT+AGG	+	chr1_3:35764576-35764595	None:intergenic	40.0%
	CCTATCTGTATGTAATGTGC+TGG	-	chr1_3:35764573-35764592	Msa0116670:three_prime_UTR	40.0%
	GCTAAGTTTCCTATGGCATT+AGG	-	chr1_3:35764595-35764614	Msa0116670:exon	40.0%
!	GAACTGATAAGCTAGCCTAT+AGG	-	chr1_3:35764783-35764802	Msa0116670:intron	40.0%
!	ACTGATAAGCTAGCCTATAG+GGG	-	chr1_3:35764785-35764804	Msa0116670:intron	40.0%
	TTGACTAAAAAAGACCAGCC+TGG	+	chr1_3:35765019-35765038	None:intergenic	40.0%
	CTTGTCTATAGGAAGACACA+TGG	-	chr1_3:35765254-35765273	Msa0116670:intron	40.0%
	CTATAGGAAGACACATGGAA+TGG	-	chr1_3:35765259-35765278	Msa0116670:intron	40.0%
	TCCTCGAAAAGATGTAAGAG+TGG	-	chr1_3:35765408-35765427	Msa0116670:intron	40.0%
!	ACCACTCTTACATCTTTTCG+AGG	+	chr1_3:35765412-35765431	None:intergenic	40.0%
	GATGTAAGAGTGGTTAAGCT+TGG	-	chr1_3:35765418-35765437	Msa0116670:intron	40.0%
	ACAACCATCATTGGGAACAA+AGG	+	chr1_3:35765599-35765618	None:intergenic	40.0%
	ACACACAATGTCACACAAGA+TGG	+	chr1_3:35765753-35765772	None:intergenic	40.0%
!!!	CAGGATGAAGTTTTGATTGC+TGG	-	chr1_3:35765785-35765804	Msa0116670:intron	40.0%
	GATTGCTGGATTTGGAAGAA+AGG	-	chr1_3:35765799-35765818	Msa0116670:intron	40.0%
	TTCAAAGTTGTGAAGGTCTC+TGG	-	chr1_3:35765854-35765873	Msa0116670:intron	40.0%
	TCAAAGTTGTGAAGGTCTCT+GGG	-	chr1_3:35765855-35765874	Msa0116670:intron	40.0%
	CTCCTTCTTCTCCTTGAAAA+GGG	+	chr1_3:35765894-35765913	None:intergenic	40.0%
	TCTCCTTCTTCTCCTTGAAA+AGG	+	chr1_3:35765895-35765914	None:intergenic	40.0%
!	GATTTTTGCTTCCTGTTGAG+TGG	-	chr1_3:35765976-35765995	Msa0116670:intron	40.0%
	GATAGGGAAGATTCACAAGT+AGG	+	chr1_3:35766089-35766108	None:intergenic	40.0%
	TGTGAATCTTCCCTATCATC+TGG	-	chr1_3:35766092-35766111	Msa0116670:intron	40.0%
!	TGACTGGTTAACACTCTGTT+TGG	-	chr1_3:35766243-35766262	Msa0116670:five_prime_UTR	40.0%
!!	TGTGCTGGCTAAGTTTCCTA+TGG	-	chr1_3:35764588-35764607	Msa0116670:exon	45.0%
	TTCGTTCTTCTTGTGGAGCA+TGG	-	chr1_3:35764676-35764695	Msa0116670:CDS	45.0%
	TCGTTCTTCTTGTGGAGCAT+GGG	-	chr1_3:35764677-35764696	Msa0116670:CDS	45.0%
	CTGAAAAAATGACGGTCACC+AGG	-	chr1_3:35764998-35765017	Msa0116670:intron	45.0%
	AGTCTCATCTTGGGAATGAG+TGG	-	chr1_3:35765345-35765364	Msa0116670:intron	45.0%
!	GAGTGGAAGAAACCTTTTGC+TGG	-	chr1_3:35765362-35765381	Msa0116670:intron	45.0%
	AGCTATTCGTAAGTGTGCCA+GGG	-	chr1_3:35765540-35765559	Msa0116670:intron	45.0%
	GTGACATTGTGTGTGACTGA+TGG	-	chr1_3:35765759-35765778	Msa0116670:intron	45.0%
	CAAAGTTGTGAAGGTCTCTG+GGG	-	chr1_3:35765856-35765875	Msa0116670:intron	45.0%
!	GTCTCTTCTTGCCCTTTTCA+AGG	-	chr1_3:35765880-35765899	Msa0116670:intron	45.0%
!!	TGCCCTTTTCAAGGAGAAGA+AGG	-	chr1_3:35765889-35765908	Msa0116670:intron	45.0%
!!	TGTGCTGGCTAAGTTTCCTA+TGG	-	chr1_3:35764588-35764607	Msa0116670:exon	45.0%
	TTCGTTCTTCTTGTGGAGCA+TGG	-	chr1_3:35764676-35764695	Msa0116670:CDS	45.0%
	TCGTTCTTCTTGTGGAGCAT+GGG	-	chr1_3:35764677-35764696	Msa0116670:CDS	45.0%
	CTGAAAAAATGACGGTCACC+AGG	-	chr1_3:35764998-35765017	Msa0116670:intron	45.0%
	AGTCTCATCTTGGGAATGAG+TGG	-	chr1_3:35765345-35765364	Msa0116670:intron	45.0%
!	GAGTGGAAGAAACCTTTTGC+TGG	-	chr1_3:35765362-35765381	Msa0116670:intron	45.0%
	AGCTATTCGTAAGTGTGCCA+GGG	-	chr1_3:35765540-35765559	Msa0116670:intron	45.0%
	GTGACATTGTGTGTGACTGA+TGG	-	chr1_3:35765759-35765778	Msa0116670:intron	45.0%
	CAAAGTTGTGAAGGTCTCTG+GGG	-	chr1_3:35765856-35765875	Msa0116670:intron	45.0%
!	GTCTCTTCTTGCCCTTTTCA+AGG	-	chr1_3:35765880-35765899	Msa0116670:intron	45.0%
!!	TGCCCTTTTCAAGGAGAAGA+AGG	-	chr1_3:35765889-35765908	Msa0116670:intron	45.0%
!	AGGGTTTTCGTCTTCCGTGT+TGG	-	chr1_3:35764258-35764277	Msa0116670:three_prime_UTR	50.0%
	TTGAGCTCGGAGGTTATGGA+GGG	+	chr1_3:35764302-35764321	None:intergenic	50.0%
	TGTGTTGAGCTCGGAGGTTA+TGG	+	chr1_3:35764306-35764325	None:intergenic	50.0%
	TGGTCCTTGTGTGTTGAGCT+CGG	+	chr1_3:35764315-35764334	None:intergenic	50.0%
	GCAATGAAGGAGTTACCCCA+TGG	+	chr1_3:35764343-35764362	None:intergenic	50.0%
	CCAATCAGCTCATCCCCTAT+AGG	+	chr1_3:35764801-35764820	None:intergenic	50.0%
	CCTATAGGGGATGAGCTGAT+TGG	-	chr1_3:35764798-35764817	Msa0116670:intron	50.0%
	AAAAATGACGGTCACCAGGC+TGG	-	chr1_3:35765002-35765021	Msa0116670:intron	50.0%
	GAGGACAATTCCCTTTGCGT+GGG	+	chr1_3:35765393-35765412	None:intergenic	50.0%
	CAGCTATTCGTAAGTGTGCC+AGG	-	chr1_3:35765539-35765558	Msa0116670:intron	50.0%
	GCTGCCTTTGTTCCCAATGA+TGG	-	chr1_3:35765592-35765611	Msa0116670:intron	50.0%
	TGTGTGTGACTGATGGTTGC+AGG	-	chr1_3:35765766-35765785	Msa0116670:intron	50.0%
	TGGAAGAAAGGGTCATGCTG+TGG	-	chr1_3:35765811-35765830	Msa0116670:intron	50.0%
	GGAAGAAAGGGTCATGCTGT+GGG	-	chr1_3:35765812-35765831	Msa0116670:intron	50.0%
	CATGCTGTGGGAGATATTCC+TGG	-	chr1_3:35765824-35765843	Msa0116670:intron	50.0%
!	AGGGTTTTCGTCTTCCGTGT+TGG	-	chr1_3:35764258-35764277	Msa0116670:three_prime_UTR	50.0%
	TTGAGCTCGGAGGTTATGGA+GGG	+	chr1_3:35764302-35764321	None:intergenic	50.0%
	TGTGTTGAGCTCGGAGGTTA+TGG	+	chr1_3:35764306-35764325	None:intergenic	50.0%
	TGGTCCTTGTGTGTTGAGCT+CGG	+	chr1_3:35764315-35764334	None:intergenic	50.0%
	GCAATGAAGGAGTTACCCCA+TGG	+	chr1_3:35764343-35764362	None:intergenic	50.0%
	CCAATCAGCTCATCCCCTAT+AGG	+	chr1_3:35764801-35764820	None:intergenic	50.0%
	CCTATAGGGGATGAGCTGAT+TGG	-	chr1_3:35764798-35764817	Msa0116670:intron	50.0%
	AAAAATGACGGTCACCAGGC+TGG	-	chr1_3:35765002-35765021	Msa0116670:intron	50.0%
	GAGGACAATTCCCTTTGCGT+GGG	+	chr1_3:35765393-35765412	None:intergenic	50.0%
	CAGCTATTCGTAAGTGTGCC+AGG	-	chr1_3:35765539-35765558	Msa0116670:intron	50.0%
	GCTGCCTTTGTTCCCAATGA+TGG	-	chr1_3:35765592-35765611	Msa0116670:intron	50.0%
	TGTGTGTGACTGATGGTTGC+AGG	-	chr1_3:35765766-35765785	Msa0116670:intron	50.0%
	TGGAAGAAAGGGTCATGCTG+TGG	-	chr1_3:35765811-35765830	Msa0116670:intron	50.0%
	GGAAGAAAGGGTCATGCTGT+GGG	-	chr1_3:35765812-35765831	Msa0116670:intron	50.0%
	CATGCTGTGGGAGATATTCC+TGG	-	chr1_3:35765824-35765843	Msa0116670:intron	50.0%
	GAGCAGCAACAGCACCAACA+CGG	+	chr1_3:35764275-35764294	None:intergenic	55.0%
	GTTGAGCTCGGAGGTTATGG+AGG	+	chr1_3:35764303-35764322	None:intergenic	55.0%
	ACCTCCGAGCTCAACACACA+AGG	-	chr1_3:35764308-35764327	Msa0116670:three_prime_UTR	55.0%
	TCCTTGTGTGTTGAGCTCGG+AGG	+	chr1_3:35764312-35764331	None:intergenic	55.0%
	ACACAAGGACCAAGCAGCCA+TGG	-	chr1_3:35764323-35764342	Msa0116670:three_prime_UTR	55.0%
	CACAAGGACCAAGCAGCCAT+GGG	-	chr1_3:35764324-35764343	Msa0116670:three_prime_UTR	55.0%
	ACAAGGACCAAGCAGCCATG+GGG	-	chr1_3:35764325-35764344	Msa0116670:three_prime_UTR	55.0%
	GCGTGGGAAGAACCAGCAAA+AGG	+	chr1_3:35765377-35765396	None:intergenic	55.0%
!!	TGCTGGTTCTTCCCACGCAA+AGG	-	chr1_3:35765379-35765398	Msa0116670:intron	55.0%
!	GCTGGTTCTTCCCACGCAAA+GGG	-	chr1_3:35765380-35765399	Msa0116670:intron	55.0%
	CGAGGACAATTCCCTTTGCG+TGG	+	chr1_3:35765394-35765413	None:intergenic	55.0%
	TGCTTCCTGTTGAGTGGGCA+TGG	-	chr1_3:35765982-35766001	Msa0116670:intron	55.0%
	GCTTCCTGTTGAGTGGGCAT+GGG	-	chr1_3:35765983-35766002	Msa0116670:intron	55.0%
	AATGCCCATGCCCACTCAAC+AGG	+	chr1_3:35765990-35766009	None:intergenic	55.0%
	GAGCAGCAACAGCACCAACA+CGG	+	chr1_3:35764275-35764294	None:intergenic	55.0%
	GTTGAGCTCGGAGGTTATGG+AGG	+	chr1_3:35764303-35764322	None:intergenic	55.0%
	ACCTCCGAGCTCAACACACA+AGG	-	chr1_3:35764308-35764327	Msa0116670:three_prime_UTR	55.0%
	TCCTTGTGTGTTGAGCTCGG+AGG	+	chr1_3:35764312-35764331	None:intergenic	55.0%
	ACACAAGGACCAAGCAGCCA+TGG	-	chr1_3:35764323-35764342	Msa0116670:three_prime_UTR	55.0%
	CACAAGGACCAAGCAGCCAT+GGG	-	chr1_3:35764324-35764343	Msa0116670:three_prime_UTR	55.0%
	ACAAGGACCAAGCAGCCATG+GGG	-	chr1_3:35764325-35764344	Msa0116670:three_prime_UTR	55.0%
	GCGTGGGAAGAACCAGCAAA+AGG	+	chr1_3:35765377-35765396	None:intergenic	55.0%
!!	TGCTGGTTCTTCCCACGCAA+AGG	-	chr1_3:35765379-35765398	Msa0116670:intron	55.0%
!	GCTGGTTCTTCCCACGCAAA+GGG	-	chr1_3:35765380-35765399	Msa0116670:intron	55.0%
	CGAGGACAATTCCCTTTGCG+TGG	+	chr1_3:35765394-35765413	None:intergenic	55.0%
	TGCTTCCTGTTGAGTGGGCA+TGG	-	chr1_3:35765982-35766001	Msa0116670:intron	55.0%
	GCTTCCTGTTGAGTGGGCAT+GGG	-	chr1_3:35765983-35766002	Msa0116670:intron	55.0%
	AATGCCCATGCCCACTCAAC+AGG	+	chr1_3:35765990-35766009	None:intergenic	55.0%
	GGAGTTACCCCATGGCTGCT+TGG	+	chr1_3:35764335-35764354	None:intergenic	60.0%
	GCAAGCTGAAGTCTCACCGC+AGG	-	chr1_3:35765291-35765310	Msa0116670:intron	60.0%
	AGCTGAAGTCTCACCGCAGG+AGG	-	chr1_3:35765294-35765313	Msa0116670:intron	60.0%
	AGTCTCACCGCAGGAGGCAA+AGG	-	chr1_3:35765300-35765319	Msa0116670:intron	60.0%
	TCACCGCAGGAGGCAAAGGT+GGG	-	chr1_3:35765304-35765323	Msa0116670:intron	60.0%
	GGAGTTACCCCATGGCTGCT+TGG	+	chr1_3:35764335-35764354	None:intergenic	60.0%
	GCAAGCTGAAGTCTCACCGC+AGG	-	chr1_3:35765291-35765310	Msa0116670:intron	60.0%
	AGCTGAAGTCTCACCGCAGG+AGG	-	chr1_3:35765294-35765313	Msa0116670:intron	60.0%
	AGTCTCACCGCAGGAGGCAA+AGG	-	chr1_3:35765300-35765319	Msa0116670:intron	60.0%
	TCACCGCAGGAGGCAAAGGT+GGG	-	chr1_3:35765304-35765323	Msa0116670:intron	60.0%
	CTCACCGCAGGAGGCAAAGG+TGG	-	chr1_3:35765303-35765322	Msa0116670:intron	65.0%
	CAGCCCACCTTTGCCTCCTG+CGG	+	chr1_3:35765310-35765329	None:intergenic	65.0%
	CTCACCGCAGGAGGCAAAGG+TGG	-	chr1_3:35765303-35765322	Msa0116670:intron	65.0%
	CAGCCCACCTTTGCCTCCTG+CGG	+	chr1_3:35765310-35765329	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	35764236	35766292	35764236	ID=Msa0116670;Name=Msa0116670
chr1_3	mRNA	35764236	35766292	35764236	ID=Msa0116670-mRNA-1;Parent=Msa0116670;Name=Msa0116670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106\|1\|1\|1\|1\|1\|4\|364\|142
chr1_3	exon	35764236	35764740	35764236	ID=Msa0116670-mRNA-1:exon:11562;Parent=Msa0116670-mRNA-1
chr1_3	exon	35764889	35765015	35764889	ID=Msa0116670-mRNA-1:exon:11561;Parent=Msa0116670-mRNA-1
chr1_3	exon	35765108	35765263	35765108	ID=Msa0116670-mRNA-1:exon:11560;Parent=Msa0116670-mRNA-1
chr1_3	exon	35766182	35766292	35766182	ID=Msa0116670-mRNA-1:exon:11559;Parent=Msa0116670-mRNA-1
chr1_3	five_prime_UTR	35766187	35766292	35766187	ID=Msa0116670-mRNA-1:five_prime_utr;Parent=Msa0116670-mRNA-1
chr1_3	CDS	35766182	35766186	35766182	ID=Msa0116670-mRNA-1:cds;Parent=Msa0116670-mRNA-1
chr1_3	CDS	35765108	35765263	35765108	ID=Msa0116670-mRNA-1:cds;Parent=Msa0116670-mRNA-1
chr1_3	CDS	35764889	35765015	35764889	ID=Msa0116670-mRNA-1:cds;Parent=Msa0116670-mRNA-1
chr1_3	CDS	35764600	35764740	35764600	ID=Msa0116670-mRNA-1:cds;Parent=Msa0116670-mRNA-1
chr1_3	three_prime_UTR	35764236	35764599	35764236	ID=Msa0116670-mRNA-1:three_prime_utr;Parent=Msa0116670-mRNA-1

Gene Sequence

>Msa0116670

ATGGGGAAGACACATGGAATGGGAGCTGCTCGCAAGCTGAAGTCTCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGGAATGAGTGGAAGAAACCTTTTGCTGGTTCTTCCCACGCAAAGGGAATTGTCCTCGAAAAGATTGGTATTGAGGCTAAACAGCCCAATTCAGCTATTCGTAAGTGTGCCAGGGTACAACTAATCAAGAATGGAAAGAAAATTGCTGCCTTTGTTCCCAATGATGGTTGTCTAAACTACATCGAAGAAAATGATGAAGTTTTGATTGCTGGATTTGGAAGAAAGGGTCATGCTGTGGGAGATATTCCTGGAGTTAGATTCAAAGTTGTGAAGGTCTCTGGGGTGTCTCTTCTTGCCCTTTTCAAGGAGAAGAAGGAGAAGCCAAGATCTTAG

Protein sequence

>Msa0116670

MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*