AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353060 MtrunA17_Chr5g0446981 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa1353060 MtrunA17_Chr5g0395191 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa1353060 MtrunA17_Chr4g0015931 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa1353060 MtrunA17_CPg0492591 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa1353060 MtrunA17_Chr2g0322131 44.444 108 58 1 47 152 1 108 4.33e-28 101
Msa1353060 MtrunA17_Chr6g0465821 40.566 106 61 1 48 151 2 107 2.69e-23 89.4
Msa1353060 MtrunA17_Chr4g0017131 41.414 99 56 1 47 143 1 99 5.57e-22 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353060 AT5G46160.2 71.839 174 39 3 1 166 1 172 9.83e-80 234
Msa1353060 AT5G46160.1 71.429 175 39 3 1 166 1 173 1.74e-79 233
Msa1353060 AT1G17560.1 57.653 196 51 6 1 165 1 195 5.66e-64 195
Msa1353060 AT1G17560.2 59.627 161 34 4 34 165 14 172 3.37e-54 169
Msa1353060 ATCG00780.1 44.628 121 65 1 47 165 1 121 6.94e-33 114

Find 65 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTCATTCTTCAGTTTA+AGG 0.107312 tig0013070:-17718 Msa1353060:intron
CTGAAGGTTGTGGACAATTC+TGG 0.240087 tig0013070:-14799 Msa1353060:CDS
CTAGCCTGTTTCACATTACT+TGG 0.268303 tig0013070:-14101 Msa1353060:three_prime_UTR
TTCATATAATTTGAATCTTT+CGG 0.312238 tig0013070:-14403 Msa1353060:three_prime_UTR
GGACAATTCTGGAGCTAAAA+AGG 0.321429 tig0013070:-14788 Msa1353060:CDS
GACAAACAAGGGCAGCCTAT+TGG 0.362318 tig0013070:-14565 Msa1353060:CDS
ACAAACAAGGGCAGCCTATT+GGG 0.366691 tig0013070:-14564 Msa1353060:CDS
GTCAAGATCCTTACCTTAGC+TGG 0.374088 tig0013070:-14493 Msa1353060:CDS
CAGCATACCACGAGAACATC+TGG 0.375805 tig0013070:+16933 None:intergenic
CAATCCAAGTAATGTGAAAC+AGG 0.391569 tig0013070:+14097 None:intergenic
GTGAAGGAAGCACATCCTAA+TGG 0.397241 tig0013070:-14700 Msa1353060:CDS
ATCTTTCGGTATGAATTGTA+AGG 0.408729 tig0013070:-14389 Msa1353060:three_prime_UTR
AGCTGGGCATATTGCATAGA+TGG 0.414136 tig0013070:-14476 Msa1353060:exon
TGCCTCAACTCATGAGGAAC+TGG 0.420523 tig0013070:+14526 None:intergenic
TTATTCCACAATGTGATACT+TGG 0.429446 tig0013070:-14187 Msa1353060:three_prime_UTR
AGATTCCACAATAAAATTTG+AGG 0.442249 tig0013070:+14443 None:intergenic
CCGAAAACTCTGGTCCCAAT+AGG 0.444490 tig0013070:+14550 None:intergenic
CGCGCGTTGGCAGGGAAGAA+AGG 0.457182 tig0013070:-14754 Msa1353060:CDS
GGGAAGAAAGGAGCAAGATT+AGG 0.462937 tig0013070:-14742 Msa1353060:CDS
ATGTGCATACGCGCGTTGGC+AGG 0.463329 tig0013070:-14763 Msa1353060:CDS
CTAGTGGGCCGTTCTCTGTT+CGG 0.468029 tig0013070:-15171 Msa1353060:intron
AAAGATTCAAATTATATGAA+TGG 0.479656 tig0013070:+14406 None:intergenic
TCCTAATGGAAAAGTGAAGA+AGG 0.493277 tig0013070:-14686 Msa1353060:CDS
CTGCCATCACACCTACCCTT+TGG 0.494271 tig0013070:+14625 None:intergenic
TTGCAGCCATCTTGAAAAGT+TGG 0.509500 tig0013070:+16965 None:intergenic
TGAGAAGACGAGACGGGAGT+CGG 0.513042 tig0013070:+17733 None:intergenic
ATGTGAAACAGGCTAGTTTG+TGG 0.515780 tig0013070:+14108 None:intergenic
GAGTCGGAGAGAAAAGAAGA+AGG 0.517428 tig0013070:+17749 None:intergenic
AACAGTCCTCATCTGTATGA+AGG 0.520727 tig0013070:+14822 None:intergenic
ATGCCAAAGGGTAGGTGTGA+TGG 0.533908 tig0013070:-14628 Msa1353060:CDS
ATCCTGATGAAACACAGAAA+AGG 0.538422 tig0013070:-14347 Msa1353060:three_prime_UTR
CAATATGCCCAGCTAAGGTA+AGG 0.539065 tig0013070:+14485 None:intergenic
CATTGCTGCACGAACAACTA+CGG 0.550383 tig0013070:+14648 None:intergenic
AGGAACTGGTCCGAAAACTC+TGG 0.550755 tig0013070:+14540 None:intergenic
GGATTAAGCAACAGTTCCCC+TGG 0.554137 tig0013070:-15147 Msa1353060:CDS
TCAAGATCCTTACCTTAGCT+GGG 0.562147 tig0013070:-14492 Msa1353060:CDS
CTATGCAATATGCCCAGCTA+AGG 0.565511 tig0013070:+14480 None:intergenic
TGTTCGTGCAGCAATGCCAA+AGG 0.568662 tig0013070:-14641 Msa1353060:CDS
TGTAGAAAGTAGAAATGTGA+AGG 0.575451 tig0013070:-14162 Msa1353060:three_prime_UTR
GTGGGCCGTTCTCTGTTCGG+TGG 0.576791 tig0013070:-15168 Msa1353060:CDS
GACCAGTTCCTCATGAGTTG+AGG 0.580661 tig0013070:-14528 Msa1353060:CDS
ACAGATGAGGACTGTTCTGA+AGG 0.580846 tig0013070:-14815 Msa1353060:CDS
GAGGACTGTTCTGAAGGTTG+TGG 0.589490 tig0013070:-14809 Msa1353060:CDS
GGTGATGTGCATACGCGCGT+TGG 0.592616 tig0013070:-14767 Msa1353060:CDS
GAAGAATGAGAAGACGAGAC+GGG 0.594049 tig0013070:+17727 None:intergenic
GTTCGTGCAGCAATGCCAAA+GGG 0.599925 tig0013070:-14640 Msa1353060:CDS
TGTGACGTGGTAAATAGACC+AGG 0.603644 tig0013070:+15129 None:intergenic
TTAATCCACCGAACAGAGAA+CGG 0.620154 tig0013070:+15163 None:intergenic
ACGAGAACATCTGGAAGCAA+TGG 0.620942 tig0013070:+16942 None:intergenic
TGAAGAATGAGAAGACGAGA+CGG 0.625581 tig0013070:+17726 None:intergenic
CCTAATGGAAAAGTGAAGAA+GGG 0.626002 tig0013070:-14685 Msa1353060:CDS
TTCTTCTGCCTCAACTCATG+AGG 0.632900 tig0013070:+14520 None:intergenic
ATAAAACAAGTATCACATTG+TGG 0.640427 tig0013070:+14132 None:intergenic
GTGCAGCAATGCCAAAGGGT+AGG 0.641762 tig0013070:-14636 Msa1353060:CDS
AGTCGGAGAGAAAAGAAGAA+GGG 0.643205 tig0013070:+17750 None:intergenic
ACAATCCAAGTATCACATTG+TGG 0.654956 tig0013070:+14182 None:intergenic
GTTGTGCTTGTTGACAAACA+AGG 0.656177 tig0013070:-14577 Msa1353060:CDS
TATGATACAAGCATCAGTGA+AGG 0.662607 tig0013070:-14716 Msa1353060:CDS
AACGAACCTTCATACAGATG+AGG 0.663831 tig0013070:-14828 Msa1353060:CDS
ATTGCTTCCAGATGTTCTCG+TGG 0.666829 tig0013070:-16940 Msa1353060:intron
TTGTGCTTGTTGACAAACAA+GGG 0.669343 tig0013070:-14576 Msa1353060:CDS
GTGACGTGGTAAATAGACCA+GGG 0.672796 tig0013070:+15130 None:intergenic
GGGTAGGTGTGATGGCAGTG+AGG 0.701393 tig0013070:-14620 Msa1353060:CDS
TGACGTGGTAAATAGACCAG+GGG 0.731348 tig0013070:+15131 None:intergenic
GCATGTCATCTCATGTGACG+TGG 0.739886 tig0013070:+15116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATTGATAAATAATTT+CGG + tig0013070:15017-15036 None:intergenic 10.0%
!!! AATTGTTGCATTTTTTTAAT+AGG - tig0013070:14663-14682 Msa1353060:CDS 15.0%
!!! AATAATTTCGGTTTTAAAAA+TGG + tig0013070:15005-15024 None:intergenic 15.0%
!! ACAAAATTTAAAAGAATACT+CGG + tig0013070:15520-15539 None:intergenic 15.0%
!! AGTTTATAAAAGTGAAATAT+AGG + tig0013070:15818-15837 None:intergenic 15.0%
!! TATATCTAATTATCTATTTC+CGG + tig0013070:16243-16262 None:intergenic 15.0%
!! AAAGATTCAAATTATATGAA+TGG + tig0013070:17487-17506 None:intergenic 15.0%
!! TTCATATAATTTGAATCTTT+CGG - tig0013070:17487-17506 Msa1353060:intron 15.0%
!! TGTGAAGTATATGAAAATTA+GGG + tig0013070:14306-14325 None:intergenic 20.0%
!! TTGTGAAGTATATGAAAATT+AGG + tig0013070:14307-14326 None:intergenic 20.0%
!! ATTGCATTGAATTATATCAT+TGG - tig0013070:14458-14477 Msa1353060:three_prime_UTR 20.0%
!! GTTGTTAATATATATAACAG+TGG + tig0013070:14760-14779 None:intergenic 20.0%
!!! AATTTTGCAAACAGATATTT+AGG - tig0013070:14784-14803 Msa1353060:CDS 20.0%
!! AAATAAAGAATATCCAGAAA+TGG + tig0013070:14845-14864 None:intergenic 20.0%
!!! CATTAATTTTTGTAGTTCAA+TGG - tig0013070:15073-15092 Msa1353060:intron 20.0%
!! AAACACAATTGTAACAAAAT+GGG + tig0013070:15109-15128 None:intergenic 20.0%
!! AAAACACAATTGTAACAAAA+TGG + tig0013070:15110-15129 None:intergenic 20.0%
!!! GTTACAATTGTGTTTTTTAT+AGG - tig0013070:15114-15133 Msa1353060:CDS 20.0%
!! AGCTAATGATAGTAAAATAA+AGG + tig0013070:15611-15630 None:intergenic 20.0%
!!! ATGAAAAGGCATTTTTTTAA+TGG + tig0013070:16287-16306 None:intergenic 20.0%
!!! TTAAAAAAATGCCTTTTCAT+CGG - tig0013070:16287-16306 Msa1353060:intron 20.0%
!!! GTTTTAGTAAACTAACAATT+TGG + tig0013070:16400-16419 None:intergenic 20.0%
!! TAATATATGAAATTTCAGAG+TGG + tig0013070:16524-16543 None:intergenic 20.0%
!!! CAAGAATTTTTATGTTGATA+AGG - tig0013070:16624-16643 Msa1353060:intron 20.0%
!! AGCATAAGAAAATAATGTTA+AGG + tig0013070:16866-16885 None:intergenic 20.0%
!! GAGTTAGCAGATTAATTTTT+CGG + tig0013070:14112-14131 None:intergenic 25.0%
! TAAAGACATGAGATTTAAAC+AGG + tig0013070:14871-14890 None:intergenic 25.0%
! ATATTCCCTGAAAAAATGAA+GGG + tig0013070:14897-14916 None:intergenic 25.0%
! TATATTCCCTGAAAAAATGA+AGG + tig0013070:14898-14917 None:intergenic 25.0%
!! TTCTTTTGCATGTTGAAAAT+TGG - tig0013070:15289-15308 Msa1353060:intron 25.0%
!!! AATTTTGTTTTCACTGAAGT+TGG - tig0013070:15532-15551 Msa1353060:intron 25.0%
!!! ATTTTGTTTTCACTGAAGTT+GGG - tig0013070:15533-15552 Msa1353060:intron 25.0%
!! ATGAAAAAGCAACATTTTGT+GGG + tig0013070:15899-15918 None:intergenic 25.0%
!! TATGAAAAAGCAACATTTTG+TGG + tig0013070:15900-15919 None:intergenic 25.0%
!! ATACAATATTTCTGTGTTCT+TGG - tig0013070:16028-16047 Msa1353060:intron 25.0%
!! TACAATATTTCTGTGTTCTT+GGG - tig0013070:16029-16048 Msa1353060:intron 25.0%
! ATCTCCAAAATATAAGCAAA+AGG + tig0013070:16163-16182 None:intergenic 25.0%
!!! AAACATTGATTCTATCCTTT+TGG - tig0013070:16365-16384 Msa1353060:intron 25.0%
! GTAATAATGAAACTACAACA+TGG + tig0013070:16422-16441 None:intergenic 25.0%
! GTTGTAGTTTCATTATTACA+TGG - tig0013070:16423-16442 Msa1353060:intron 25.0%
! AGATTCCACAATAAAATTTG+AGG + tig0013070:17450-17469 None:intergenic 25.0%
!! CTTGCTTCTAAAAAAATGTT+AGG + tig0013070:17616-17635 None:intergenic 25.0%
!! TTCTGAATGATTTTTCGTTT+TGG - tig0013070:17667-17686 Msa1353060:intron 25.0%
! ATAAAACAAGTATCACATTG+TGG + tig0013070:17761-17780 None:intergenic 25.0%
TCTTCTCATTCTTCAGTTTA+AGG - tig0013070:14172-14191 Msa1353060:three_prime_UTR 30.0%
AATGAGACATAATTGTATGG+AGG + tig0013070:14736-14755 None:intergenic 30.0%
GGAAATGAGACATAATTGTA+TGG + tig0013070:14739-14758 None:intergenic 30.0%
TATTCCCTGAAAAAATGAAG+GGG + tig0013070:14896-14915 None:intergenic 30.0%
!! AAGATACCAACTTTTCAAGA+TGG - tig0013070:14919-14938 Msa1353060:intron 30.0%
TGACTTTCACCACATATTTA+TGG - tig0013070:15173-15192 Msa1353060:intron 30.0%
AGACATCAACCATAAATATG+TGG + tig0013070:15185-15204 None:intergenic 30.0%
GATAAATGGGTACTTCTATA+AGG + tig0013070:15395-15414 None:intergenic 30.0%
GCATTATACCTACGATAAAT+GGG + tig0013070:15408-15427 None:intergenic 30.0%
TGCATTATACCTACGATAAA+TGG + tig0013070:15409-15428 None:intergenic 30.0%
ACATTGTAAGAAAAAGAAGC+AGG + tig0013070:15701-15720 None:intergenic 30.0%
! TTGGACTTGTTCTAGATAAT+AGG + tig0013070:15872-15891 None:intergenic 30.0%
! TGAAAAAGCAACATTTTGTG+GGG + tig0013070:15898-15917 None:intergenic 30.0%
AATTCGTTACTTCTTGGAAA+GGG + tig0013070:15939-15958 None:intergenic 30.0%
AAATTCGTTACTTCTTGGAA+AGG + tig0013070:15940-15959 None:intergenic 30.0%
! TTCCAAGAAGTAACGAATTT+TGG - tig0013070:15940-15959 Msa1353060:intron 30.0%
! TCCAAGAAGTAACGAATTTT+GGG - tig0013070:15941-15960 Msa1353060:intron 30.0%
ACCAACAAAGGATCAATAAT+CGG - tig0013070:16076-16095 Msa1353060:intron 30.0%
! AGCACCTTTTGCTTATATTT+TGG - tig0013070:16156-16175 Msa1353060:intron 30.0%
!! TTTTAATGGTCTTGGAAAGT+TGG + tig0013070:16273-16292 None:intergenic 30.0%
!!! AGGCATTTTTTTAATGGTCT+TGG + tig0013070:16281-16300 None:intergenic 30.0%
!!! CATTTTAACTTCCGATGAAA+AGG + tig0013070:16301-16320 None:intergenic 30.0%
AAACAGTTATTCTCTTACCT+GGG + tig0013070:16332-16351 None:intergenic 30.0%
AAAACAGTTATTCTCTTACC+TGG + tig0013070:16333-16352 None:intergenic 30.0%
!! GTGTTTGACTTGTAAATAGA+GGG + tig0013070:16599-16618 None:intergenic 30.0%
TGTTGAAAAACCAAACTAGT+GGG - tig0013070:16704-16723 Msa1353060:intron 30.0%
!!! ATGCAACAGTTATTTTTCTC+AGG - tig0013070:16793-16812 Msa1353060:intron 30.0%
! TATTTTTCTCAGGTACATGT+AGG - tig0013070:16803-16822 Msa1353060:intron 30.0%
AAGATTACCAATACTGTGTT+TGG + tig0013070:16891-16910 None:intergenic 30.0%
!!! ACTGTTGTTTTCTACAATCT+AGG + tig0013070:16917-16936 None:intergenic 30.0%
TATGTGTAAGAAACTAAGCA+TGG + tig0013070:16992-17011 None:intergenic 30.0%
! GTCATCCTCAAATTTTATTG+TGG - tig0013070:17442-17461 Msa1353060:intron 30.0%
ATCTTTCGGTATGAATTGTA+AGG - tig0013070:17501-17520 Msa1353060:intron 30.0%
TTATTCCACAATGTGATACT+TGG - tig0013070:17703-17722 Msa1353060:intron 30.0%
TGTAGAAAGTAGAAATGTGA+AGG - tig0013070:17728-17747 Msa1353060:five_prime_UTR 30.0%
CAAGGCAAGTTATTGAGAAA+TGG + tig0013070:14229-14248 None:intergenic 35.0%
CTTCAATCATAAGTGAGTGT+CGG + tig0013070:14395-14414 None:intergenic 35.0%
GACATAATTGTATGGAGGAA+CGG + tig0013070:14731-14750 None:intergenic 35.0%
! GAACAAGCATTTTCCATTTC+TGG - tig0013070:14829-14848 Msa1353060:CDS 35.0%
!!! TTATGCCCCTTCATTTTTTC+AGG - tig0013070:14888-14907 Msa1353060:intron 35.0%
!!! TATGCCCCTTCATTTTTTCA+GGG - tig0013070:14889-14908 Msa1353060:intron 35.0%
TCATATCAAGAGCTTGAAAG+AGG + tig0013070:15156-15175 None:intergenic 35.0%
CATCATCATGTGTACACAAT+GGG - tig0013070:15342-15361 Msa1353060:intron 35.0%
TACACAATGGGAACTTGTAA+AGG - tig0013070:15354-15373 Msa1353060:intron 35.0%
!! TAGAAGTACCCATTTATCGT+AGG - tig0013070:15397-15416 Msa1353060:intron 35.0%
ATGCTAAACAGTCACCTAAA+AGG + tig0013070:15448-15467 None:intergenic 35.0%
! TTTTACGTGGGTAGTAACTA+AGG + tig0013070:15478-15497 None:intergenic 35.0%
ATCCTTAAGCTAAATCAGCT+GGG - tig0013070:15580-15599 Msa1353060:intron 35.0%
!! TACTATCATTAGCTTTGTCG+AGG - tig0013070:15617-15636 Msa1353060:intron 35.0%
AAGAAAAAGAAGCAGGAATG+TGG + tig0013070:15694-15713 None:intergenic 35.0%
!! TCTCTTTGAAGCAGATATCT+TGG - tig0013070:15743-15762 Msa1353060:intron 35.0%
AGGTGTCTTGATATTGTATC+TGG + tig0013070:15852-15871 None:intergenic 35.0%
TCCCAAAATTCGTTACTTCT+TGG + tig0013070:15945-15964 None:intergenic 35.0%
GTTGTGAGTATCATCATTCT+TGG + tig0013070:15973-15992 None:intergenic 35.0%
GAGAAAAATCACACCAACAA+AGG - tig0013070:16064-16083 Msa1353060:intron 35.0%
TCCGATTATTGATCCTTTGT+TGG + tig0013070:16080-16099 None:intergenic 35.0%
TCTACAGCACTGTCTTTATA+TGG - tig0013070:16193-16212 Msa1353060:intron 35.0%
AACAGTTATTCTCTTACCTG+GGG + tig0013070:16331-16350 None:intergenic 35.0%
!!! CATTGATTCTATCCTTTTGG+TGG - tig0013070:16368-16387 Msa1353060:intron 35.0%
! TTGCCAATGCTCATGTTTTA+GGG + tig0013070:16459-16478 None:intergenic 35.0%
! TTTGCCAATGCTCATGTTTT+AGG + tig0013070:16460-16479 None:intergenic 35.0%
!! TTGACTTGTAAATAGAGGGA+GGG + tig0013070:16595-16614 None:intergenic 35.0%
!! TTTGACTTGTAAATAGAGGG+AGG + tig0013070:16596-16615 None:intergenic 35.0%
!! CGTGTTTGACTTGTAAATAG+AGG + tig0013070:16600-16619 None:intergenic 35.0%
GTGTTGAAAAACCAAACTAG+TGG - tig0013070:16703-16722 Msa1353060:intron 35.0%
! AGACATTGTTTTCTTCAGGA+AGG + tig0013070:17026-17045 None:intergenic 35.0%
! AGGAAGACATTGTTTTCTTC+AGG + tig0013070:17030-17049 None:intergenic 35.0%
TATGATACAAGCATCAGTGA+AGG - tig0013070:17174-17193 Msa1353060:intron 35.0%
TCCTAATGGAAAAGTGAAGA+AGG - tig0013070:17204-17223 Msa1353060:intron 35.0%
CCTAATGGAAAAGTGAAGAA+GGG - tig0013070:17205-17224 Msa1353060:intron 35.0%
! TTGTGCTTGTTGACAAACAA+GGG - tig0013070:17314-17333 Msa1353060:intron 35.0%
ATCCTGATGAAACACAGAAA+AGG - tig0013070:17543-17562 Msa1353060:intron 35.0%
! AACCTTTTCTGTGTTTCATC+AGG + tig0013070:17548-17567 None:intergenic 35.0%
ACAATCCAAGTATCACATTG+TGG + tig0013070:17711-17730 None:intergenic 35.0%
CAATCCAAGTAATGTGAAAC+AGG + tig0013070:17796-17815 None:intergenic 35.0%
AGTCGGAGAGAAAAGAAGAA+GGG + tig0013070:14143-14162 None:intergenic 40.0%
TGAAGAATGAGAAGACGAGA+CGG + tig0013070:14167-14186 None:intergenic 40.0%
GTTCAATGTCCATGCTTCAT+AGG - tig0013070:14485-14504 Msa1353060:CDS 40.0%
TTGCAGCCATCTTGAAAAGT+TGG + tig0013070:14928-14947 None:intergenic 40.0%
! GTGAGTTTTCACTCATTGTC+TGG - tig0013070:15249-15268 Msa1353060:intron 40.0%
GCATCATCATGTGTACACAA+TGG - tig0013070:15341-15360 Msa1353060:intron 40.0%
!! GGAACTTGTAAAGGTACTGT+AGG - tig0013070:15363-15382 Msa1353060:intron 40.0%
! AGAAGTAGGCACTTTTACGT+GGG + tig0013070:15490-15509 None:intergenic 40.0%
! TGTTTTCACTGAAGTTGGGA+TGG - tig0013070:15537-15556 Msa1353060:intron 40.0%
! GTTTTCACTGAAGTTGGGAT+GGG - tig0013070:15538-15557 Msa1353060:intron 40.0%
! CAGCTGATTTAGCTTAAGGA+TGG + tig0013070:15581-15600 None:intergenic 40.0%
CATCCTTAAGCTAAATCAGC+TGG - tig0013070:15579-15598 Msa1353060:intron 40.0%
! ATCCCAGCTGATTTAGCTTA+AGG + tig0013070:15585-15604 None:intergenic 40.0%
TATCTGCTTCAAAGAGACCA+GGG + tig0013070:15740-15759 None:intergenic 40.0%
ATATCTGCTTCAAAGAGACC+AGG + tig0013070:15741-15760 None:intergenic 40.0%
TCATGGAGCAAATCACACAA+CGG + tig0013070:15779-15798 None:intergenic 40.0%
TCCATGAAAGTCAAGAGTCA+AGG - tig0013070:15792-15811 Msa1353060:intron 40.0%
! GCAACATTTTGTGGGGTTAT+TGG + tig0013070:15891-15910 None:intergenic 40.0%
!! CTTTATATGGAGCTGGTTTG+TGG - tig0013070:16206-16225 Msa1353060:intron 40.0%
GTTAAAATGTCAACTTCCCC+AGG - tig0013070:16312-16331 Msa1353060:intron 40.0%
ATTTGGACATCACCACCAAA+AGG + tig0013070:16383-16402 None:intergenic 40.0%
AGAGTGGTTGCAAAATGTAG+TGG + tig0013070:16508-16527 None:intergenic 40.0%
TTAATCCACCGAACAGAGAA+CGG + tig0013070:16730-16749 None:intergenic 40.0%
TACATGTAGGAATCAGTTGC+AGG - tig0013070:16816-16835 Msa1353060:intron 40.0%
ATGCTTGCCAAACACAGTAT+TGG - tig0013070:16881-16900 Msa1353060:intron 40.0%
ACATGTATCTTTGCACTGCA+TGG + tig0013070:16947-16966 None:intergenic 40.0%
AACGAACCTTCATACAGATG+AGG - tig0013070:17062-17081 Msa1353060:intron 40.0%
AACAGTCCTCATCTGTATGA+AGG + tig0013070:17071-17090 None:intergenic 40.0%
!! GGACAATTCTGGAGCTAAAA+AGG - tig0013070:17102-17121 Msa1353060:intron 40.0%
!! CCCTTCTTCACTTTTCCATT+AGG + tig0013070:17208-17227 None:intergenic 40.0%
! GTTGTGCTTGTTGACAAACA+AGG - tig0013070:17313-17332 Msa1353060:intron 40.0%
TCAAGATCCTTACCTTAGCT+GGG - tig0013070:17398-17417 Msa1353060:intron 40.0%
!! ATGTGAAACAGGCTAGTTTG+TGG + tig0013070:17785-17804 None:intergenic 40.0%
CTAGCCTGTTTCACATTACT+TGG - tig0013070:17789-17808 Msa1353060:five_prime_UTR 40.0%
GAGTCGGAGAGAAAAGAAGA+AGG + tig0013070:14144-14163 None:intergenic 45.0%
GAAGAATGAGAAGACGAGAC+GGG + tig0013070:14166-14185 None:intergenic 45.0%
CACACGTGTCAATGTTGTGT+CGG + tig0013070:14438-14457 None:intergenic 45.0%
CAGAAGAAGCCTATGAAGCA+TGG + tig0013070:14497-14516 None:intergenic 45.0%
ACGAGAACATCTGGAAGCAA+TGG + tig0013070:14951-14970 None:intergenic 45.0%
ATTGCTTCCAGATGTTCTCG+TGG - tig0013070:14950-14969 Msa1353060:intron 45.0%
! CTCCAGTACTGTCTCCTTTT+AGG - tig0013070:15431-15450 Msa1353060:intron 45.0%
CACCTAAAAGGAGACAGTAC+TGG + tig0013070:15436-15455 None:intergenic 45.0%
! CAGAAGTAGGCACTTTTACG+TGG + tig0013070:15491-15510 None:intergenic 45.0%
!! CACGTAAAAGTGCCTACTTC+TGG - tig0013070:15489-15508 Msa1353060:intron 45.0%
AGCTTAAGGATGGCAACATC+TGG + tig0013070:15571-15590 None:intergenic 45.0%
GCCTTGACTCTTGACTTTCA+TGG + tig0013070:15796-15815 None:intergenic 45.0%
GCACTGTCTTTATATGGAGC+TGG - tig0013070:16199-16218 Msa1353060:intron 45.0%
GCTCCCTAAAACATGAGCAT+TGG - tig0013070:16453-16472 Msa1353060:intron 45.0%
TTAGTGGCACAAGTGCAAAC+TGG + tig0013070:16567-16586 None:intergenic 45.0%
TGACGTGGTAAATAGACCAG+GGG + tig0013070:16762-16781 None:intergenic 45.0%
GTGACGTGGTAAATAGACCA+GGG + tig0013070:16763-16782 None:intergenic 45.0%
TGTGACGTGGTAAATAGACC+AGG + tig0013070:16764-16783 None:intergenic 45.0%
GGTTCGTTGTTGCTGCAAAA+AGG + tig0013070:17050-17069 None:intergenic 45.0%
ACAGATGAGGACTGTTCTGA+AGG - tig0013070:17075-17094 Msa1353060:intron 45.0%
CTGAAGGTTGTGGACAATTC+TGG - tig0013070:17091-17110 Msa1353060:intron 45.0%
GGGAAGAAAGGAGCAAGATT+AGG - tig0013070:17148-17167 Msa1353060:intron 45.0%
! GTGAAGGAAGCACATCCTAA+TGG - tig0013070:17190-17209 Msa1353060:intron 45.0%
CATTGCTGCACGAACAACTA+CGG + tig0013070:17245-17264 None:intergenic 45.0%
ACAAACAAGGGCAGCCTATT+GGG - tig0013070:17326-17345 Msa1353060:intron 45.0%
! CCTATTGGGACCAGAGTTTT+CGG - tig0013070:17340-17359 Msa1353060:intron 45.0%
TTCTTCTGCCTCAACTCATG+AGG + tig0013070:17373-17392 None:intergenic 45.0%
GTCAAGATCCTTACCTTAGC+TGG - tig0013070:17397-17416 Msa1353060:intron 45.0%
CAATATGCCCAGCTAAGGTA+AGG + tig0013070:17408-17427 None:intergenic 45.0%
CTATGCAATATGCCCAGCTA+AGG + tig0013070:17413-17432 None:intergenic 45.0%
AGCTGGGCATATTGCATAGA+TGG - tig0013070:17414-17433 Msa1353060:intron 45.0%
!! AATAATAAAAAAAATAAACA+AGG + tig0013070:14247-14266 None:intergenic 5.0%
!!! TTTTTTTATTATTATATCAT+AGG - tig0013070:14254-14273 Msa1353060:three_prime_UTR 5.0%
!! TAATAAAAATATTTATTAAG+TGG + tig0013070:16661-16680 None:intergenic 5.0%
!! TTGTGTCGGTTTCGTACAGC+GGG + tig0013070:14424-14443 None:intergenic 50.0%
!! GTTGTGTCGGTTTCGTACAG+CGG + tig0013070:14425-14444 None:intergenic 50.0%
CAGCATACCACGAGAACATC+TGG + tig0013070:14960-14979 None:intergenic 50.0%
TACTCGGAGATGCCAGAAGT+AGG + tig0013070:15504-15523 None:intergenic 50.0%
TACTCCATGTCTGCTAACCC+TGG - tig0013070:15720-15739 Msa1353060:intron 50.0%
GACAGTGCTGTAGAGAGTTG+AGG + tig0013070:16187-16206 None:intergenic 50.0%
!! TATGGAGCTGGTTTGTGGCT+TGG - tig0013070:16211-16230 Msa1353060:intron 50.0%
! GTTTGTGGCTTGGCTTCTTC+CGG - tig0013070:16221-16240 Msa1353060:intron 50.0%
TAGAGGGAGGGAGTGATTAG+TGG + tig0013070:16583-16602 None:intergenic 50.0%
GGATTAAGCAACAGTTCCCC+TGG - tig0013070:16743-16762 Msa1353060:intron 50.0%
GCATGTCATCTCATGTGACG+TGG + tig0013070:16777-16796 None:intergenic 50.0%
!! GAGGACTGTTCTGAAGGTTG+TGG - tig0013070:17081-17100 Msa1353060:intron 50.0%
TGTTCGTGCAGCAATGCCAA+AGG - tig0013070:17249-17268 Msa1353060:intron 50.0%
GTTCGTGCAGCAATGCCAAA+GGG - tig0013070:17250-17269 Msa1353060:intron 50.0%
ATGCCAAAGGGTAGGTGTGA+TGG - tig0013070:17262-17281 Msa1353060:intron 50.0%
GACAAACAAGGGCAGCCTAT+TGG - tig0013070:17325-17344 Msa1353060:intron 50.0%
CCGAAAACTCTGGTCCCAAT+AGG + tig0013070:17343-17362 None:intergenic 50.0%
AGGAACTGGTCCGAAAACTC+TGG + tig0013070:17353-17372 None:intergenic 50.0%
GACCAGTTCCTCATGAGTTG+AGG - tig0013070:17362-17381 Msa1353060:intron 50.0%
TGCCTCAACTCATGAGGAAC+TGG + tig0013070:17367-17386 None:intergenic 50.0%
TGAGAAGACGAGACGGGAGT+CGG + tig0013070:14160-14179 None:intergenic 55.0%
! GAGACCAGGGTTAGCAGACA+TGG + tig0013070:15727-15746 None:intergenic 55.0%
CAGAGAACGGCCCACTAGTT+TGG + tig0013070:16717-16736 None:intergenic 55.0%
! CTAGTGGGCCGTTCTCTGTT+CGG - tig0013070:16719-16738 Msa1353060:intron 55.0%
GTGCAGCAATGCCAAAGGGT+AGG - tig0013070:17254-17273 Msa1353060:intron 55.0%
CTGCCATCACACCTACCCTT+TGG + tig0013070:17268-17287 None:intergenic 55.0%
GGTGATGTGCATACGCGCGT+TGG - tig0013070:17123-17142 Msa1353060:intron 60.0%
! ATGTGCATACGCGCGTTGGC+AGG - tig0013070:17127-17146 Msa1353060:intron 60.0%
! TGTGCATACGCGCGTTGGCA+GGG - tig0013070:17128-17147 Msa1353060:intron 60.0%
GGGTAGGTGTGATGGCAGTG+AGG - tig0013070:17270-17289 Msa1353060:intron 60.0%
GTGGGCCGTTCTCTGTTCGG+TGG - tig0013070:16722-16741 Msa1353060:intron 65.0%
! CGCGCGTTGGCAGGGAAGAA+AGG - tig0013070:17136-17155 Msa1353060:intron 65.0%
Chromosome Type Strat End Strand Name
tig0013070 gene 14096 17816 14096 ID=Msa1353060;Name=Msa1353060
tig0013070 mRNA 14096 17816 14096 ID=Msa1353060-mRNA-1;Parent=Msa1353060;Name=Msa1353060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|0|0.25|4|384|166
tig0013070 exon 14096 14854 14096 ID=Msa1353060-mRNA-1:exon:8486;Parent=Msa1353060-mRNA-1
tig0013070 exon 15098 15189 15098 ID=Msa1353060-mRNA-1:exon:8485;Parent=Msa1353060-mRNA-1
tig0013070 exon 16941 17002 16941 ID=Msa1353060-mRNA-1:exon:8484;Parent=Msa1353060-mRNA-1
tig0013070 exon 17719 17816 17719 ID=Msa1353060-mRNA-1:exon:8483;Parent=Msa1353060-mRNA-1
tig0013070 five_prime_UTR 17719 17816 17719 ID=Msa1353060-mRNA-1:five_prime_utr;Parent=Msa1353060-mRNA-1
tig0013070 five_prime_UTR 16975 17002 16975 ID=Msa1353060-mRNA-1:five_prime_utr;Parent=Msa1353060-mRNA-1
tig0013070 CDS 16941 16974 16941 ID=Msa1353060-mRNA-1:cds;Parent=Msa1353060-mRNA-1
tig0013070 CDS 15098 15189 15098 ID=Msa1353060-mRNA-1:cds;Parent=Msa1353060-mRNA-1
tig0013070 CDS 14480 14854 14480 ID=Msa1353060-mRNA-1:cds;Parent=Msa1353060-mRNA-1
tig0013070 three_prime_UTR 14096 14479 14096 ID=Msa1353060-mRNA-1:three_prime_utr;Parent=Msa1353060-mRNA-1
Gene Sequence

>Msa1353060

ATGGCTGCAACCATTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCGGTGGATTAAGCAACAGTTCCCCTGGTCTATTTACCACGTCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAACAACGAACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAATTCTGGAGCTAAAAAGGTGATGTGCATACGCGCGTTGGCAGGGAAGAAAGGAGCAAGATTAGGTGATATGATACAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAGGGAGCTGTTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCAAAGGGTAGGTGTGATGGCAGTGAGGTCAAGTTTGACGACAATGCTGTTGTGCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTAGCTGGGCATATTGCATAG

Protein sequence

>Msa1353060

MAATIASRCSRVGRSLFGGLSNSSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRALAGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*