AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750880 MtrunA17_Chr5g0446981 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa0750880 MtrunA17_Chr5g0395191 99.398 166 1 0 1 166 1 166 3.30e-121 338
Msa0750880 MtrunA17_Chr4g0015931 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa0750880 MtrunA17_CPg0492591 42.975 121 67 1 47 165 1 121 1.92e-31 109
Msa0750880 MtrunA17_Chr2g0322131 44.444 108 58 1 47 152 1 108 4.33e-28 101
Msa0750880 MtrunA17_Chr6g0465821 40.566 106 61 1 48 151 2 107 2.69e-23 89.4
Msa0750880 MtrunA17_Chr4g0017131 41.414 99 56 1 47 143 1 99 5.57e-22 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750880 AT5G46160.2 71.839 174 39 3 1 166 1 172 9.83e-80 234
Msa0750880 AT5G46160.1 71.429 175 39 3 1 166 1 173 1.74e-79 233
Msa0750880 AT1G17560.1 57.653 196 51 6 1 165 1 195 5.66e-64 195
Msa0750880 AT1G17560.2 59.627 161 34 4 34 165 14 172 3.37e-54 169
Msa0750880 ATCG00780.1 44.628 121 65 1 47 165 1 121 6.94e-33 114

Find 65 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTCATTCTTCAGTTTA+AGG 0.107312 5_2:-4448584 Msa0750880:intron
CTGAAGGTTGTGGACAATTC+TGG 0.240087 5_2:-4445500 Msa0750880:CDS
CTAGCCTGTTTCACATTACT+TGG 0.268303 5_2:-4444802 Msa0750880:three_prime_UTR
TTCATATAATTTGAATCTTT+CGG 0.312238 5_2:-4445104 Msa0750880:three_prime_UTR
GGACAATTCTGGAGCTAAAA+AGG 0.321429 5_2:-4445489 Msa0750880:CDS
GACAAACAAGGGCAGCCTAT+TGG 0.362318 5_2:-4445266 Msa0750880:CDS
ACAAACAAGGGCAGCCTATT+GGG 0.366691 5_2:-4445265 Msa0750880:CDS
GTCAAGATCCTTACCTTAGC+TGG 0.374088 5_2:-4445194 Msa0750880:CDS
CAGCATACCACGAGAACATC+TGG 0.375805 5_2:+4447766 None:intergenic
CAATCCAAGTAATGTGAAAC+AGG 0.391569 5_2:+4444798 None:intergenic
GTGAAGGAAGCACATCCTAA+TGG 0.397241 5_2:-4445401 Msa0750880:CDS
ATCTTTCGGTATGAATTGTA+AGG 0.408729 5_2:-4445090 Msa0750880:three_prime_UTR
AGCTGGGCATATTGCATAGA+TGG 0.414136 5_2:-4445177 Msa0750880:exon
TGCCTCAACTCATGAGGAAC+TGG 0.420523 5_2:+4445227 None:intergenic
TTATTCCACAATGTGATACT+TGG 0.429446 5_2:-4444888 Msa0750880:three_prime_UTR
AGATTCCACAATAAAATTTG+AGG 0.442249 5_2:+4445144 None:intergenic
CCGAAAACTCTGGTCCCAAT+AGG 0.444490 5_2:+4445251 None:intergenic
CGCGCGTTGGCAGGGAAGAA+AGG 0.457182 5_2:-4445455 Msa0750880:CDS
GGGAAGAAAGGAGCAAGATT+AGG 0.462937 5_2:-4445443 Msa0750880:CDS
ATGTGCATACGCGCGTTGGC+AGG 0.463329 5_2:-4445464 Msa0750880:CDS
CTAGTGGGCCGTTCTCTGTT+CGG 0.468029 5_2:-4445872 Msa0750880:intron
AAAGATTCAAATTATATGAA+TGG 0.479656 5_2:+4445107 None:intergenic
TCCTAATGGAAAAGTGAAGA+AGG 0.493277 5_2:-4445387 Msa0750880:CDS
CTGCCATCACACCTACCCTT+TGG 0.494271 5_2:+4445326 None:intergenic
TTGCAGCCATCTTGAAAAGT+TGG 0.509500 5_2:+4447798 None:intergenic
TGAGAAGACGAGACGGGAGT+CGG 0.513042 5_2:+4448599 None:intergenic
ATGTGAAACAGGCTAGTTTG+TGG 0.515780 5_2:+4444809 None:intergenic
GAGTCGGAGAGAAAAGAAGA+AGG 0.517428 5_2:+4448615 None:intergenic
AACAGTCCTCATCTGTATGA+AGG 0.520727 5_2:+4445523 None:intergenic
ATGCCAAAGGGTAGGTGTGA+TGG 0.533908 5_2:-4445329 Msa0750880:CDS
ATCCTGATGAAACACAGAAA+AGG 0.538422 5_2:-4445048 Msa0750880:three_prime_UTR
CAATATGCCCAGCTAAGGTA+AGG 0.539065 5_2:+4445186 None:intergenic
CATTGCTGCACGAACAACTA+CGG 0.550383 5_2:+4445349 None:intergenic
AGGAACTGGTCCGAAAACTC+TGG 0.550755 5_2:+4445241 None:intergenic
GGATTAAGCAACAGTTCCCC+TGG 0.554137 5_2:-4445848 Msa0750880:CDS
TCAAGATCCTTACCTTAGCT+GGG 0.562147 5_2:-4445193 Msa0750880:CDS
CTATGCAATATGCCCAGCTA+AGG 0.565511 5_2:+4445181 None:intergenic
TGTTCGTGCAGCAATGCCAA+AGG 0.568662 5_2:-4445342 Msa0750880:CDS
TGTAGAAAGTAGAAATGTGA+AGG 0.575451 5_2:-4444863 Msa0750880:three_prime_UTR
GTGGGCCGTTCTCTGTTCGG+TGG 0.576791 5_2:-4445869 Msa0750880:CDS
GACCAGTTCCTCATGAGTTG+AGG 0.580661 5_2:-4445229 Msa0750880:CDS
ACAGATGAGGACTGTTCTGA+AGG 0.580846 5_2:-4445516 Msa0750880:CDS
GAGGACTGTTCTGAAGGTTG+TGG 0.589490 5_2:-4445510 Msa0750880:CDS
GGTGATGTGCATACGCGCGT+TGG 0.592616 5_2:-4445468 Msa0750880:CDS
GAAGAATGAGAAGACGAGAC+GGG 0.594049 5_2:+4448593 None:intergenic
GTTCGTGCAGCAATGCCAAA+GGG 0.599925 5_2:-4445341 Msa0750880:CDS
TGTGACGTGGTAAATAGACC+AGG 0.603644 5_2:+4445830 None:intergenic
TTAATCCACCGAACAGAGAA+CGG 0.620154 5_2:+4445864 None:intergenic
ACGAGAACATCTGGAAGCAA+TGG 0.620942 5_2:+4447775 None:intergenic
TGAAGAATGAGAAGACGAGA+CGG 0.625581 5_2:+4448592 None:intergenic
CCTAATGGAAAAGTGAAGAA+GGG 0.626002 5_2:-4445386 Msa0750880:CDS
TTCTTCTGCCTCAACTCATG+AGG 0.632900 5_2:+4445221 None:intergenic
ATAAAACAAGTATCACATTG+TGG 0.640427 5_2:+4444833 None:intergenic
GTGCAGCAATGCCAAAGGGT+AGG 0.641762 5_2:-4445337 Msa0750880:CDS
AGTCGGAGAGAAAAGAAGAA+GGG 0.643205 5_2:+4448616 None:intergenic
ACAATCCAAGTATCACATTG+TGG 0.654956 5_2:+4444883 None:intergenic
GTTGTGCTTGTTGACAAACA+AGG 0.656177 5_2:-4445278 Msa0750880:CDS
TATGATACAAGCATCAGTGA+AGG 0.662607 5_2:-4445417 Msa0750880:CDS
AACGAACCTTCATACAGATG+AGG 0.663831 5_2:-4445529 Msa0750880:CDS
ATTGCTTCCAGATGTTCTCG+TGG 0.666829 5_2:-4447773 Msa0750880:intron
TTGTGCTTGTTGACAAACAA+GGG 0.669343 5_2:-4445277 Msa0750880:CDS
GTGACGTGGTAAATAGACCA+GGG 0.672796 5_2:+4445831 None:intergenic
GGGTAGGTGTGATGGCAGTG+AGG 0.701393 5_2:-4445321 Msa0750880:CDS
TGACGTGGTAAATAGACCAG+GGG 0.731348 5_2:+4445832 None:intergenic
GCATGTCATCTCATGTGACG+TGG 0.739886 5_2:+4445817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATTGATAAATAATTT+CGG + chr5_2:4445751-4445770 None:intergenic 10.0%
!! TAATAAAAATATCTATTAAG+TGG + chr5_2:4447527-4447546 None:intergenic 10.0%
!!! AATAATTTCGGTTTTAAAAA+TGG + chr5_2:4445739-4445758 None:intergenic 15.0%
!! AAAGCAACATTAAAAAAAAA+AGG + chr5_2:4446118-4446137 None:intergenic 15.0%
!!! TTTTTTTTTTAATGTTGCTT+TGG - chr5_2:4446117-4446136 Msa0750880:intron 15.0%
!!! TTTTCTAAATTTTTTGCTAT+AGG + chr5_2:4446167-4446186 None:intergenic 15.0%
!! ACAAAATTTAAAAGAATACT+CGG + chr5_2:4446386-4446405 None:intergenic 15.0%
!! AGTTTATAAAAGTGAAATAT+GGG + chr5_2:4446684-4446703 None:intergenic 15.0%
!! AAGTTTATAAAAGTGAAATA+TGG + chr5_2:4446685-4446704 None:intergenic 15.0%
!! TATATCTAATTATCTATTTC+CGG + chr5_2:4447109-4447128 None:intergenic 15.0%
!! AAAGATTCAAATTATATGAA+TGG + chr5_2:4448353-4448372 None:intergenic 15.0%
!! TTCATATAATTTGAATCTTT+CGG - chr5_2:4448353-4448372 Msa0750880:intron 15.0%
!! TGTGAAGTATATGAAAATTA+GGG + chr5_2:4445008-4445027 None:intergenic 20.0%
!! TTGTGAAGTATATGAAAATT+AGG + chr5_2:4445009-4445028 None:intergenic 20.0%
!! ATTGCATTGAATTATATCAT+TGG - chr5_2:4445163-4445182 Msa0750880:exon 20.0%
!! GTTGTTAATATATATAACAG+TGG + chr5_2:4445494-4445513 None:intergenic 20.0%
!!! AATTTTGCAAACAGATATTT+AGG - chr5_2:4445518-4445537 Msa0750880:CDS 20.0%
!! AAATAAAGAATATCCAGAAA+TGG + chr5_2:4445579-4445598 None:intergenic 20.0%
!!! CATTAATTTTTGTAGTTCAA+TGG - chr5_2:4445808-4445827 Msa0750880:CDS 20.0%
!! AAACACAATTGTAACAAAAT+GGG + chr5_2:4445844-4445863 None:intergenic 20.0%
!! AAAACACAATTGTAACAAAA+TGG + chr5_2:4445845-4445864 None:intergenic 20.0%
!!! GTTACAATTGTGTTTTTTAT+AGG - chr5_2:4445849-4445868 Msa0750880:CDS 20.0%
!!! ACATTAAAAAAAAAAGGTAC+TGG + chr5_2:4446112-4446131 None:intergenic 20.0%
!! AGCTAATGATAGTAAAATAA+AGG + chr5_2:4446477-4446496 None:intergenic 20.0%
!!! ATGAAAAGGCATTTTTTTAA+TGG + chr5_2:4447153-4447172 None:intergenic 20.0%
!!! TTAAAAAAATGCCTTTTCAT+CGG - chr5_2:4447153-4447172 Msa0750880:intron 20.0%
!!! GTTTTAGTAAACTAACAATT+TGG + chr5_2:4447266-4447285 None:intergenic 20.0%
!! TAATATATGAAATTTCAGAG+TGG + chr5_2:4447390-4447409 None:intergenic 20.0%
!!! CAAGAATTTTTATGTTGATA+AGG - chr5_2:4447490-4447509 Msa0750880:intron 20.0%
!! AGCATAAGAAAATAATGTTA+AGG + chr5_2:4447732-4447751 None:intergenic 20.0%
!! GAGTTAGCAGATTAATTTTT+CGG + chr5_2:4444813-4444832 None:intergenic 25.0%
! ATTGAGATGTTGAATAGAAT+AGG - chr5_2:4445228-4445247 Msa0750880:CDS 25.0%
! TAAAGACATGAGATTTAAAC+AGG + chr5_2:4445605-4445624 None:intergenic 25.0%
! ATATTCCCTGAAAAAATGAA+GGG + chr5_2:4445631-4445650 None:intergenic 25.0%
! TATATTCCCTGAAAAAATGA+AGG + chr5_2:4445632-4445651 None:intergenic 25.0%
!! TTCTTTTGCATGTTGAAAAT+TGG - chr5_2:4446024-4446043 Msa0750880:intron 25.0%
!!! AATTTTGTTTTCACTGAAGT+TGG - chr5_2:4446398-4446417 Msa0750880:intron 25.0%
!!! ATTTTGTTTTCACTGAAGTT+GGG - chr5_2:4446399-4446418 Msa0750880:intron 25.0%
!! ATGAAAAAGCAACATTTTGT+GGG + chr5_2:4446765-4446784 None:intergenic 25.0%
!! TATGAAAAAGCAACATTTTG+TGG + chr5_2:4446766-4446785 None:intergenic 25.0%
!! ATACAATATTTCTGTGTTCT+TGG - chr5_2:4446894-4446913 Msa0750880:intron 25.0%
!! TACAATATTTCTGTGTTCTT+GGG - chr5_2:4446895-4446914 Msa0750880:intron 25.0%
! ATCTCCAAAATATAAGCAAA+AGG + chr5_2:4447029-4447048 None:intergenic 25.0%
!!! AAACATTGATTCTATCCTTT+TGG - chr5_2:4447231-4447250 Msa0750880:intron 25.0%
! GTAATAATGAAACTACAACA+TGG + chr5_2:4447288-4447307 None:intergenic 25.0%
! GTTGTAGTTTCATTATTACA+TGG - chr5_2:4447289-4447308 Msa0750880:intron 25.0%
! AGATTCCACAATAAAATTTG+AGG + chr5_2:4448316-4448335 None:intergenic 25.0%
!! CTTGCTTCTAAAAAAATGTT+AGG + chr5_2:4448482-4448501 None:intergenic 25.0%
!! TTCTGAATGATTTTTCGTTT+TGG - chr5_2:4448533-4448552 Msa0750880:intron 25.0%
! ATAAAACAAGTATCACATTG+TGG + chr5_2:4448627-4448646 None:intergenic 25.0%
TCTTCTCATTCTTCAGTTTA+AGG - chr5_2:4444873-4444892 Msa0750880:three_prime_UTR 30.0%
CAATAATCATAAGTGAGTGT+CGG + chr5_2:4445097-4445116 None:intergenic 30.0%
ACACTCACTTATGATTATTG+AGG - chr5_2:4445097-4445116 Msa0750880:three_prime_UTR 30.0%
AATGAGACATAATTGTATGG+AGG + chr5_2:4445470-4445489 None:intergenic 30.0%
GGAAATGAGACATAATTGTA+TGG + chr5_2:4445473-4445492 None:intergenic 30.0%
TATTCCCTGAAAAAATGAAG+GGG + chr5_2:4445630-4445649 None:intergenic 30.0%
!! AAGATACCAACTTTTCAAGA+TGG - chr5_2:4445653-4445672 Msa0750880:intron 30.0%
TGACTTTCACCACATATTTA+TGG - chr5_2:4445908-4445927 Msa0750880:intron 30.0%
AGACATCAACCATAAATATG+TGG + chr5_2:4445920-4445939 None:intergenic 30.0%
GATAAATGGGTACTTCTATA+AGG + chr5_2:4446261-4446280 None:intergenic 30.0%
GCATTATACCTACGATAAAT+GGG + chr5_2:4446274-4446293 None:intergenic 30.0%
TGCATTATACCTACGATAAA+TGG + chr5_2:4446275-4446294 None:intergenic 30.0%
ACATTGTAAGAAAAAGAAGC+AGG + chr5_2:4446567-4446586 None:intergenic 30.0%
TATATGCTTCAAAGAGAACA+GGG + chr5_2:4446606-4446625 None:intergenic 30.0%
ATATATGCTTCAAAGAGAAC+AGG + chr5_2:4446607-4446626 None:intergenic 30.0%
!! TCTCTTTGAAGCATATATCT+TGG - chr5_2:4446609-4446628 Msa0750880:intron 30.0%
! TTGGACTTGTTCTAGATAAT+AGG + chr5_2:4446738-4446757 None:intergenic 30.0%
! TGAAAAAGCAACATTTTGTG+GGG + chr5_2:4446764-4446783 None:intergenic 30.0%
AAATTCGTTACTTCTTGGAA+AGG + chr5_2:4446806-4446825 None:intergenic 30.0%
! TTCCAAGAAGTAACGAATTT+TGG - chr5_2:4446806-4446825 Msa0750880:intron 30.0%
! TCCAAGAAGTAACGAATTTT+GGG - chr5_2:4446807-4446826 Msa0750880:intron 30.0%
ACCAACAAAGGATCAATAAT+CGG - chr5_2:4446942-4446961 Msa0750880:intron 30.0%
! AGCACCTTTTGCTTATATTT+TGG - chr5_2:4447022-4447041 Msa0750880:intron 30.0%
!! TTTTAATGGTCTTGGAAAGT+TGG + chr5_2:4447139-4447158 None:intergenic 30.0%
!!! AGGCATTTTTTTAATGGTCT+TGG + chr5_2:4447147-4447166 None:intergenic 30.0%
!!! CATTTTAACTTCCGATGAAA+AGG + chr5_2:4447167-4447186 None:intergenic 30.0%
AAACAGTTATTCTCTTACCT+GGG + chr5_2:4447198-4447217 None:intergenic 30.0%
AAAACAGTTATTCTCTTACC+TGG + chr5_2:4447199-4447218 None:intergenic 30.0%
!! GTGTTTGACTTGTAAATAGA+GGG + chr5_2:4447465-4447484 None:intergenic 30.0%
TGTTGAAAAACCAAACTAGT+GGG - chr5_2:4447570-4447589 Msa0750880:intron 30.0%
!!! ATGCAACAGTTATTTTTCTC+AGG - chr5_2:4447659-4447678 Msa0750880:intron 30.0%
! TATTTTTCTCAGGTACATGT+AGG - chr5_2:4447669-4447688 Msa0750880:intron 30.0%
AAGATTACCAATACTGTGTT+TGG + chr5_2:4447757-4447776 None:intergenic 30.0%
!!! ACTGTTGTTTTCTACAATCT+AGG + chr5_2:4447783-4447802 None:intergenic 30.0%
! GTCATCCTCAAATTTTATTG+TGG - chr5_2:4448308-4448327 Msa0750880:intron 30.0%
ATCTTTCGGTATGAATTGTA+AGG - chr5_2:4448367-4448386 Msa0750880:intron 30.0%
TTATTCCACAATGTGATACT+TGG - chr5_2:4448569-4448588 Msa0750880:intron 30.0%
TGTAGAAAGTAGAAATGTGA+AGG - chr5_2:4448594-4448613 Msa0750880:five_prime_UTR 30.0%
CAAGGCAAGTTATTGAGAAA+TGG + chr5_2:4444930-4444949 None:intergenic 35.0%
GAATAGAATAGGTGTCAAGT+TGG - chr5_2:4445239-4445258 Msa0750880:CDS 35.0%
GACATAATTGTATGGAGGAA+CGG + chr5_2:4445465-4445484 None:intergenic 35.0%
! GAACAAGCATTTTCCATTTC+TGG - chr5_2:4445563-4445582 Msa0750880:intron 35.0%
!!! TTATGCCCCTTCATTTTTTC+AGG - chr5_2:4445622-4445641 Msa0750880:intron 35.0%
!!! TATGCCCCTTCATTTTTTCA+GGG - chr5_2:4445623-4445642 Msa0750880:intron 35.0%
TCATATCAAGAGCTTGAAAG+AGG + chr5_2:4445891-4445910 None:intergenic 35.0%
!! TAGAAGTACCCATTTATCGT+AGG - chr5_2:4446263-4446282 Msa0750880:intron 35.0%
ATGCTAAACAGTCACCTAAA+AGG + chr5_2:4446314-4446333 None:intergenic 35.0%
! TTTTACGTGGGTAGTAACTA+AGG + chr5_2:4446344-4446363 None:intergenic 35.0%
ATCCTTAAGCTAAATCAGCT+GGG - chr5_2:4446446-4446465 Msa0750880:intron 35.0%
!! TACTATCATTAGCTTTGTCG+AGG - chr5_2:4446483-4446502 Msa0750880:intron 35.0%
AAGAAAAAGAAGCAGGAATG+TGG + chr5_2:4446560-4446579 None:intergenic 35.0%
AGGTGTCTTGATATTGTATC+TGG + chr5_2:4446718-4446737 None:intergenic 35.0%
TCCCAAAATTCGTTACTTCT+TGG + chr5_2:4446811-4446830 None:intergenic 35.0%
GTTGTGAGTATCATCATTCT+TGG + chr5_2:4446839-4446858 None:intergenic 35.0%
GAGAAAAATCACACCAACAA+AGG - chr5_2:4446930-4446949 Msa0750880:intron 35.0%
TCCGATTATTGATCCTTTGT+TGG + chr5_2:4446946-4446965 None:intergenic 35.0%
TCTACAGCACTGTCTTTATA+TGG - chr5_2:4447059-4447078 Msa0750880:intron 35.0%
AACAGTTATTCTCTTACCTG+GGG + chr5_2:4447197-4447216 None:intergenic 35.0%
!!! CATTGATTCTATCCTTTTGG+TGG - chr5_2:4447234-4447253 Msa0750880:intron 35.0%
! TTGCCAATGCTCATGTTTTA+GGG + chr5_2:4447325-4447344 None:intergenic 35.0%
! TTTGCCAATGCTCATGTTTT+AGG + chr5_2:4447326-4447345 None:intergenic 35.0%
!! TTGACTTGTAAATAGAGGGA+GGG + chr5_2:4447461-4447480 None:intergenic 35.0%
!! TTTGACTTGTAAATAGAGGG+AGG + chr5_2:4447462-4447481 None:intergenic 35.0%
!! CGTGTTTGACTTGTAAATAG+AGG + chr5_2:4447466-4447485 None:intergenic 35.0%
GTGTTGAAAAACCAAACTAG+TGG - chr5_2:4447569-4447588 Msa0750880:intron 35.0%
TGTGTGTAAGAAACTAAGCA+TGG + chr5_2:4447858-4447877 None:intergenic 35.0%
! AGACATTGTTTTCTTCAGGA+AGG + chr5_2:4447892-4447911 None:intergenic 35.0%
! AGGAAGACATTGTTTTCTTC+AGG + chr5_2:4447896-4447915 None:intergenic 35.0%
TATGATACAAGCATCAGTGA+AGG - chr5_2:4448040-4448059 Msa0750880:intron 35.0%
TCCTAATGGAAAAGTGAAGA+AGG - chr5_2:4448070-4448089 Msa0750880:intron 35.0%
CCTAATGGAAAAGTGAAGAA+GGG - chr5_2:4448071-4448090 Msa0750880:intron 35.0%
! TTGTGCTTGTTGACAAACAA+GGG - chr5_2:4448180-4448199 Msa0750880:intron 35.0%
ATCCTGATGAAACACAGAAA+AGG - chr5_2:4448409-4448428 Msa0750880:intron 35.0%
! AACCTTTTCTGTGTTTCATC+AGG + chr5_2:4448414-4448433 None:intergenic 35.0%
ACAATCCAAGTATCACATTG+TGG + chr5_2:4448577-4448596 None:intergenic 35.0%
CAATCCAAGTAATGTGAAAC+AGG + chr5_2:4448662-4448681 None:intergenic 35.0%
AGTCGGAGAGAAAAGAAGAA+GGG + chr5_2:4444844-4444863 None:intergenic 40.0%
TGAAGAATGAGAAGACGAGA+CGG + chr5_2:4444868-4444887 None:intergenic 40.0%
GTTCAATGTCCATGCTTCAT+AGG - chr5_2:4445190-4445209 Msa0750880:CDS 40.0%
!! AGAATAGGTGTCAAGTTGGA+AGG - chr5_2:4445243-4445262 Msa0750880:CDS 40.0%
TTGCAGCCATCTTGAAAAGT+TGG + chr5_2:4445662-4445681 None:intergenic 40.0%
! GTGAGTTTTCACTCATTGTC+TGG - chr5_2:4445984-4446003 Msa0750880:intron 40.0%
TACGCAATGGGAACTTGTAA+AGG - chr5_2:4446220-4446239 Msa0750880:intron 40.0%
!! GGAACTTGTAAAGGTACTGT+AGG - chr5_2:4446229-4446248 Msa0750880:intron 40.0%
! AGAAGTAGGCACTTTTACGT+GGG + chr5_2:4446356-4446375 None:intergenic 40.0%
! TGTTTTCACTGAAGTTGGGA+TGG - chr5_2:4446403-4446422 Msa0750880:intron 40.0%
! GTTTTCACTGAAGTTGGGAT+GGG - chr5_2:4446404-4446423 Msa0750880:intron 40.0%
! CAGCTGATTTAGCTTAAGGA+TGG + chr5_2:4446447-4446466 None:intergenic 40.0%
CATCCTTAAGCTAAATCAGC+TGG - chr5_2:4446445-4446464 Msa0750880:intron 40.0%
! ATCCCAGCTGATTTAGCTTA+AGG + chr5_2:4446451-4446470 None:intergenic 40.0%
TCATGGAGCAAATCACACAA+CGG + chr5_2:4446645-4446664 None:intergenic 40.0%
TCCATGAAAGTCAAGAGTCA+AGG - chr5_2:4446658-4446677 Msa0750880:intron 40.0%
! GCAACATTTTGTGGGGTTAT+TGG + chr5_2:4446757-4446776 None:intergenic 40.0%
!! CTTTATATGGAGCTGGTTTG+TGG - chr5_2:4447072-4447091 Msa0750880:intron 40.0%
GTTAAAATGTCAACTTCCCC+AGG - chr5_2:4447178-4447197 Msa0750880:intron 40.0%
ATTTGGACATCACCACCAAA+AGG + chr5_2:4447249-4447268 None:intergenic 40.0%
AGAGTGGTTGCAAAATGTAG+TGG + chr5_2:4447374-4447393 None:intergenic 40.0%
TTAATCCACCGAACAGAGAA+CGG + chr5_2:4447596-4447615 None:intergenic 40.0%
TACATGTAGGAATCAGTTGC+AGG - chr5_2:4447682-4447701 Msa0750880:intron 40.0%
ATGCTTGCCAAACACAGTAT+TGG - chr5_2:4447747-4447766 Msa0750880:intron 40.0%
ACATGTATCTTTGCACTGCA+TGG + chr5_2:4447813-4447832 None:intergenic 40.0%
AACGAACCTTCATACAGATG+AGG - chr5_2:4447928-4447947 Msa0750880:intron 40.0%
AACAGTCCTCATCTGTATGA+AGG + chr5_2:4447937-4447956 None:intergenic 40.0%
!! GGACAATTCTGGAGCTAAAA+AGG - chr5_2:4447968-4447987 Msa0750880:intron 40.0%
!! CCCTTCTTCACTTTTCCATT+AGG + chr5_2:4448074-4448093 None:intergenic 40.0%
! GTTGTGCTTGTTGACAAACA+AGG - chr5_2:4448179-4448198 Msa0750880:intron 40.0%
TCAAGATCCTTACCTTAGCT+GGG - chr5_2:4448264-4448283 Msa0750880:intron 40.0%
!! ATGTGAAACAGGCTAGTTTG+TGG + chr5_2:4448651-4448670 None:intergenic 40.0%
CTAGCCTGTTTCACATTACT+TGG - chr5_2:4448655-4448674 Msa0750880:five_prime_UTR 40.0%
GAGTCGGAGAGAAAAGAAGA+AGG + chr5_2:4444845-4444864 None:intergenic 45.0%
GAAGAATGAGAAGACGAGAC+GGG + chr5_2:4444867-4444886 None:intergenic 45.0%
CACACGTGTCAATGTTGTGT+CGG + chr5_2:4445143-4445162 None:intergenic 45.0%
CAGAAGAAGCCTATGAAGCA+TGG + chr5_2:4445202-4445221 None:intergenic 45.0%
ACGAGAACATCTGGAAGCAA+TGG + chr5_2:4445685-4445704 None:intergenic 45.0%
ATTGCTTCCAGATGTTCTCG+TGG - chr5_2:4445684-4445703 Msa0750880:intron 45.0%
CATCACCATGTGTACGCAAT+GGG - chr5_2:4446208-4446227 Msa0750880:intron 45.0%
AAGTTCCCATTGCGTACACA+TGG + chr5_2:4446216-4446235 None:intergenic 45.0%
! CTCCAGTACTGTCTCCTTTT+AGG - chr5_2:4446297-4446316 Msa0750880:intron 45.0%
CACCTAAAAGGAGACAGTAC+TGG + chr5_2:4446302-4446321 None:intergenic 45.0%
! CAGAAGTAGGCACTTTTACG+TGG + chr5_2:4446357-4446376 None:intergenic 45.0%
!! CACGTAAAAGTGCCTACTTC+TGG - chr5_2:4446355-4446374 Msa0750880:intron 45.0%
AGCTTAAGGATGGCAACATC+TGG + chr5_2:4446437-4446456 None:intergenic 45.0%
GCCTTGACTCTTGACTTTCA+TGG + chr5_2:4446662-4446681 None:intergenic 45.0%
GCACTGTCTTTATATGGAGC+TGG - chr5_2:4447065-4447084 Msa0750880:intron 45.0%
GCTCCCTAAAACATGAGCAT+TGG - chr5_2:4447319-4447338 Msa0750880:intron 45.0%
TTAGTGGCACAAGTGCAAAC+TGG + chr5_2:4447433-4447452 None:intergenic 45.0%
TGACGTGGTAAATAGACCAG+GGG + chr5_2:4447628-4447647 None:intergenic 45.0%
GTGACGTGGTAAATAGACCA+GGG + chr5_2:4447629-4447648 None:intergenic 45.0%
TGTGACGTGGTAAATAGACC+AGG + chr5_2:4447630-4447649 None:intergenic 45.0%
GGTTCGTTGTTGCTGCAAAA+AGG + chr5_2:4447916-4447935 None:intergenic 45.0%
ACAGATGAGGACTGTTCTGA+AGG - chr5_2:4447941-4447960 Msa0750880:intron 45.0%
CTGAAGGTTGTGGACAATTC+TGG - chr5_2:4447957-4447976 Msa0750880:intron 45.0%
GGGAAGAAAGGAGCAAGATT+AGG - chr5_2:4448014-4448033 Msa0750880:intron 45.0%
! GTGAAGGAAGCACATCCTAA+TGG - chr5_2:4448056-4448075 Msa0750880:intron 45.0%
CATTGCTGCACGAACAACTA+CGG + chr5_2:4448111-4448130 None:intergenic 45.0%
ACAAACAAGGGCAGCCTATT+GGG - chr5_2:4448192-4448211 Msa0750880:intron 45.0%
! CCTATTGGGACCAGAGTTTT+CGG - chr5_2:4448206-4448225 Msa0750880:intron 45.0%
TTCTTCTGCCTCAACTCATG+AGG + chr5_2:4448239-4448258 None:intergenic 45.0%
GTCAAGATCCTTACCTTAGC+TGG - chr5_2:4448263-4448282 Msa0750880:intron 45.0%
CAATATGCCCAGCTAAGGTA+AGG + chr5_2:4448274-4448293 None:intergenic 45.0%
CTATGCAATATGCCCAGCTA+AGG + chr5_2:4448279-4448298 None:intergenic 45.0%
AGCTGGGCATATTGCATAGA+TGG - chr5_2:4448280-4448299 Msa0750880:intron 45.0%
!! ATAATAAAAAAAAATAAACA+AGG + chr5_2:4444948-4444967 None:intergenic 5.0%
!!! TTTTTTTATTATTATATCAT+AGG - chr5_2:4444956-4444975 Msa0750880:three_prime_UTR 5.0%
!! TTGTGTCGGTTTCGTACAGC+GGG + chr5_2:4445129-4445148 None:intergenic 50.0%
!! GTTGTGTCGGTTTCGTACAG+CGG + chr5_2:4445130-4445149 None:intergenic 50.0%
CAGCATACCACGAGAACATC+TGG + chr5_2:4445694-4445713 None:intergenic 50.0%
GCATCACCATGTGTACGCAA+TGG - chr5_2:4446207-4446226 Msa0750880:intron 50.0%
TACTCGGAGATGCCAGAAGT+AGG + chr5_2:4446370-4446389 None:intergenic 50.0%
! GAGAACAGGGTTAGCAGACA+TGG + chr5_2:4446593-4446612 None:intergenic 50.0%
GACAGTGCTGTAGAGAGTTG+AGG + chr5_2:4447053-4447072 None:intergenic 50.0%
!! TATGGAGCTGGTTTGTGGCT+TGG - chr5_2:4447077-4447096 Msa0750880:intron 50.0%
! GTTTGTGGCTTGGCTTCTTC+CGG - chr5_2:4447087-4447106 Msa0750880:intron 50.0%
TAGAGGGAGGGAGTGATTAG+TGG + chr5_2:4447449-4447468 None:intergenic 50.0%
GGATTAAGCAACAGTTCCCC+TGG - chr5_2:4447609-4447628 Msa0750880:intron 50.0%
GCATGTCATCTCATGTGACG+TGG + chr5_2:4447643-4447662 None:intergenic 50.0%
!! GAGGACTGTTCTGAAGGTTG+TGG - chr5_2:4447947-4447966 Msa0750880:intron 50.0%
TGTTCGTGCAGCAATGCCAA+AGG - chr5_2:4448115-4448134 Msa0750880:intron 50.0%
GTTCGTGCAGCAATGCCAAA+GGG - chr5_2:4448116-4448135 Msa0750880:intron 50.0%
ATGCCAAAGGGTAGGTGTGA+TGG - chr5_2:4448128-4448147 Msa0750880:intron 50.0%
GACAAACAAGGGCAGCCTAT+TGG - chr5_2:4448191-4448210 Msa0750880:intron 50.0%
CCGAAAACTCTGGTCCCAAT+AGG + chr5_2:4448209-4448228 None:intergenic 50.0%
AGGAACTGGTCCGAAAACTC+TGG + chr5_2:4448219-4448238 None:intergenic 50.0%
GACCAGTTCCTCATGAGTTG+AGG - chr5_2:4448228-4448247 Msa0750880:intron 50.0%
TGCCTCAACTCATGAGGAAC+TGG + chr5_2:4448233-4448252 None:intergenic 50.0%
TGAGAAGACGAGACGGGAGT+CGG + chr5_2:4444861-4444880 None:intergenic 55.0%
CAGAGAACGGCCCACTAGTT+TGG + chr5_2:4447583-4447602 None:intergenic 55.0%
! CTAGTGGGCCGTTCTCTGTT+CGG - chr5_2:4447585-4447604 Msa0750880:intron 55.0%
GTGCAGCAATGCCAAAGGGT+AGG - chr5_2:4448120-4448139 Msa0750880:intron 55.0%
CTGCCATCACACCTACCCTT+TGG + chr5_2:4448134-4448153 None:intergenic 55.0%
GGTGATGTGCATACGCGCGT+TGG - chr5_2:4447989-4448008 Msa0750880:intron 60.0%
! ATGTGCATACGCGCGTTGGC+AGG - chr5_2:4447993-4448012 Msa0750880:intron 60.0%
! TGTGCATACGCGCGTTGGCA+GGG - chr5_2:4447994-4448013 Msa0750880:intron 60.0%
GGGTAGGTGTGATGGCAGTG+AGG - chr5_2:4448136-4448155 Msa0750880:intron 60.0%
GTGGGCCGTTCTCTGTTCGG+TGG - chr5_2:4447588-4447607 Msa0750880:intron 65.0%
! CGCGCGTTGGCAGGGAAGAA+AGG - chr5_2:4448002-4448021 Msa0750880:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 4444797 4448682 4444797 ID=Msa0750880;Name=Msa0750880
chr5_2 mRNA 4444797 4448682 4444797 ID=Msa0750880-mRNA-1;Parent=Msa0750880;Name=Msa0750880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=126|1|1|1|0|0.25|4|384|166
chr5_2 exon 4444797 4445555 4444797 ID=Msa0750880-mRNA-1:exon:1701;Parent=Msa0750880-mRNA-1
chr5_2 exon 4445799 4445890 4445799 ID=Msa0750880-mRNA-1:exon:1700;Parent=Msa0750880-mRNA-1
chr5_2 exon 4447774 4447835 4447774 ID=Msa0750880-mRNA-1:exon:1699;Parent=Msa0750880-mRNA-1
chr5_2 exon 4448585 4448682 4448585 ID=Msa0750880-mRNA-1:exon:1698;Parent=Msa0750880-mRNA-1
chr5_2 five_prime_UTR 4448585 4448682 4448585 ID=Msa0750880-mRNA-1:five_prime_utr;Parent=Msa0750880-mRNA-1
chr5_2 five_prime_UTR 4447808 4447835 4447808 ID=Msa0750880-mRNA-1:five_prime_utr;Parent=Msa0750880-mRNA-1
chr5_2 CDS 4447774 4447807 4447774 ID=Msa0750880-mRNA-1:cds;Parent=Msa0750880-mRNA-1
chr5_2 CDS 4445799 4445890 4445799 ID=Msa0750880-mRNA-1:cds;Parent=Msa0750880-mRNA-1
chr5_2 CDS 4445181 4445555 4445181 ID=Msa0750880-mRNA-1:cds;Parent=Msa0750880-mRNA-1
chr5_2 three_prime_UTR 4444797 4445180 4444797 ID=Msa0750880-mRNA-1:three_prime_utr;Parent=Msa0750880-mRNA-1
Gene Sequence

>Msa0750880

ATGGCTGCAACCATTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCGGTGGATTAAGCAACAGTTCCCCTGGTCTATTTACCACGTCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAACAACGAACCTTCATACAGATGAGGACTGTTCTGAAGGTTGTGGACAATTCTGGAGCTAAAAAGGTGATGTGCATACGCGCGTTGGCAGGGAAGAAAGGAGCAAGATTAGGTGATATGATACAAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAGGGAGCTGTTGTATTTGCCGTAGTTGTTCGTGCAGCAATGCCAAAGGGTAGGTGTGATGGCAGTGAGGTCAAGTTTGACGACAATGCTGTTGTGCTTGTTGACAAACAAGGGCAGCCTATTGGGACCAGAGTTTTCGGACCAGTTCCTCATGAGTTGAGGCAGAAGAAGCATGTCAAGATCCTTACCTTAGCTGGGCATATTGCATAG

Protein sequence

>Msa0750880

MAATIASRCSRVGRSLFGGLSNSSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRALAGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA*