Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116850 | sp|P30707|RL9_PEA | 98.131 | 107 | 2 | 0 | 5 | 111 | 59 | 165 | 3.40e-71 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116850 | G7J9M6 | 99.065 | 107 | 1 | 0 | 5 | 111 | 59 | 165 | 1.49e-69 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029270 | Msa0116850 | 0.813448 | 2.546895e-51 | -8.615850e-47 |
| Msa0032090 | Msa0116850 | 0.844517 | 7.201058e-59 | -8.615850e-47 |
| Msa0032430 | Msa0116850 | 0.860645 | 1.787426e-63 | -8.615850e-47 |
| Msa0040690 | Msa0116850 | 0.805368 | 1.380822e-49 | -8.615850e-47 |
| Msa0079380 | Msa0116850 | 0.838521 | 2.737035e-57 | -8.615850e-47 |
| Msa0116850 | Msa0127050 | 0.819291 | 1.254447e-52 | -8.615850e-47 |
| Msa0116850 | Msa0150300 | 0.813244 | 2.823166e-51 | -8.615850e-47 |
| Msa0116850 | Msa0169310 | 0.826664 | 2.396750e-54 | -8.615850e-47 |
| Msa0116850 | Msa0172070 | 0.860294 | 2.282819e-63 | -8.615850e-47 |
| Msa0116850 | Msa0280090 | 0.808308 | 3.301817e-50 | -8.615850e-47 |
| Msa0116850 | Msa0385580 | 0.830737 | 2.481163e-55 | -8.615850e-47 |
| Msa0116850 | Msa0402650 | 0.808795 | 2.598244e-50 | -8.615850e-47 |
| Msa0116850 | Msa0560870 | 0.807636 | 4.588156e-50 | -8.615850e-47 |
| Msa0116850 | Msa0562030 | 0.813760 | 2.174750e-51 | -8.615850e-47 |
| Msa0116850 | Msa0564390 | 0.811289 | 7.543389e-51 | -8.615850e-47 |
| Msa0116850 | Msa0569200 | 0.803969 | 2.704974e-49 | -8.615850e-47 |
| Msa0116850 | Msa0602390 | 0.806896 | 6.582571e-50 | -8.615850e-47 |
| Msa0116850 | Msa0607050 | 0.838360 | 3.012736e-57 | -8.615850e-47 |
| Msa0116850 | Msa0649490 | 0.833274 | 5.859735e-56 | -8.615850e-47 |
| Msa0116850 | Msa0663390 | 0.805056 | 1.605151e-49 | -8.615850e-47 |
| Msa0116850 | Msa0681270 | 0.800244 | 1.578112e-48 | -8.615850e-47 |
| Msa0116850 | Msa0689260 | 0.821820 | 3.295518e-53 | -8.615850e-47 |
| Msa0116850 | Msa0690150 | 0.815614 | 8.447534e-52 | -8.615850e-47 |
| Msa0116850 | Msa0698490 | 0.802664 | 5.038781e-49 | -8.615850e-47 |
| Msa0116850 | Msa0698660 | 0.800458 | 1.427989e-48 | -8.615850e-47 |
| Msa0116850 | Msa0709400 | 0.810045 | 1.400775e-50 | -8.615850e-47 |
| Msa0116850 | Msa0711780 | 0.818312 | 2.093780e-52 | -8.615850e-47 |
| Msa0116850 | Msa0715700 | 0.802164 | 6.389255e-49 | -8.615850e-47 |
| Msa0116850 | Msa0730430 | 0.809692 | 1.668871e-50 | -8.615850e-47 |
| Msa0116850 | Msa0741840 | 0.805664 | 1.196796e-49 | -8.615850e-47 |
| Msa0116850 | Msa0757830 | 0.815877 | 7.380060e-52 | -8.615850e-47 |
| Msa0116850 | Msa0788850 | 0.812379 | 4.366301e-51 | -8.615850e-47 |
| Msa0116850 | Msa0794670 | 0.812725 | 3.668471e-51 | -8.615850e-47 |
| Msa0116850 | Msa0906200 | 0.809174 | 2.155752e-50 | -8.615850e-47 |
| Msa0116850 | Msa0959140 | 0.804525 | 2.071738e-49 | -8.615850e-47 |
| Msa0116850 | Msa0979730 | 0.805233 | 1.473726e-49 | -8.615850e-47 |
| Msa0116850 | Msa0994950 | 0.801104 | 1.054126e-48 | -8.615850e-47 |
| Msa0116850 | Msa1043690 | 0.815521 | 8.860405e-52 | -8.615850e-47 |
| Msa0116850 | Msa1051880 | 0.829417 | 5.208376e-55 | -8.615850e-47 |
| Msa0116850 | Msa1075650 | 0.802988 | 4.320130e-49 | -8.615850e-47 |
| Msa0116850 | Msa1081980 | 0.844697 | 6.438057e-59 | -8.615850e-47 |
| Msa0116850 | Msa1124960 | 0.809662 | 1.693369e-50 | -8.615850e-47 |
| Msa0116850 | Msa1162270 | 0.800131 | 1.663919e-48 | -8.615850e-47 |
| Msa0116850 | Msa1165920 | 0.801458 | 8.918928e-49 | -8.615850e-47 |
| Msa0116850 | Msa1207410 | 0.844052 | 9.597047e-59 | -8.615850e-47 |
| Msa0116850 | Msa1209460 | 0.805975 | 1.029549e-49 | -8.615850e-47 |
| Msa0116850 | Msa1358250 | 0.823298 | 1.493821e-53 | -8.615850e-47 |
| Msa0116850 | Msa1374120 | 0.856791 | 2.533134e-62 | -8.615850e-47 |
| Msa0116850 | Msa1382620 | 0.858531 | 7.728891e-63 | -8.615850e-47 |
| Msa0116850 | Msa1392780 | 0.821342 | 4.248661e-53 | -8.615850e-47 |
| Msa0116850 | Msa1432420 | 0.800797 | 1.217666e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116850 | MtrunA17_Chr3g0128201 | 99.065 | 107 | 1 | 0 | 5 | 111 | 59 | 165 | 2.87e-73 | 218 |
| Msa0116850 | MtrunA17_Chr5g0428861 | 86.916 | 107 | 14 | 0 | 5 | 111 | 59 | 165 | 2.13e-66 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116850 | AT1G33140.1 | 87.850 | 107 | 13 | 0 | 5 | 111 | 60 | 166 | 1.13e-66 | 201 |
| Msa0116850 | AT1G33120.1 | 87.850 | 107 | 13 | 0 | 5 | 111 | 60 | 166 | 1.13e-66 | 201 |
| Msa0116850 | AT4G10450.2 | 83.784 | 111 | 18 | 0 | 5 | 115 | 60 | 170 | 2.80e-65 | 197 |
| Msa0116850 | AT4G10450.1 | 85.047 | 107 | 16 | 0 | 5 | 111 | 60 | 166 | 5.52e-64 | 194 |
Find 36 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGATCCGAAACTTTCT+TGG | 0.238218 | 1_3:+36338621 | Msa0116850:CDS |
| ATTGGTGATGCTAGCGTTAA+TGG | 0.283042 | 1_3:-36338586 | None:intergenic |
| TCGATGCTTGGTTTGGTTCC+AGG | 0.300629 | 1_3:+36338457 | Msa0116850:CDS |
| GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 1_3:+36339075 | Msa0116850:CDS |
| CTCAAGATCGATGCTTGGTT+TGG | 0.321969 | 1_3:+36338450 | Msa0116850:intron |
| ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 1_3:+36339104 | Msa0116850:CDS |
| TCTTCTCTCCAAGAAAGTTT+CGG | 0.365793 | 1_3:-36338629 | None:intergenic |
| TTGGTGATGCTAGCGTTAAT+GGG | 0.394876 | 1_3:-36338585 | None:intergenic |
| CTCAATCGACTTGTTGTCAT+TGG | 0.397158 | 1_3:-36338604 | None:intergenic |
| CATGTTCATGGACCATGTTA+AGG | 0.434077 | 1_3:-36339155 | None:intergenic |
| GGAACAGAAATGCCAAGTTA+AGG | 0.447134 | 1_3:+36339231 | Msa0116850:CDS |
| AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 1_3:+36339028 | Msa0116850:CDS |
| ATGTTCATGGACCATGTTAA+GGG | 0.465431 | 1_3:-36339154 | None:intergenic |
| TTCTTCTCAAGATCGATGCT+TGG | 0.472069 | 1_3:+36338445 | Msa0116850:intron |
| GTGGCTGAGAGCAGTTCTAA+TGG | 0.474827 | 1_3:-36338493 | None:intergenic |
| AGCAGTTCTAATGGCGGCGG+AGG | 0.492719 | 1_3:-36338484 | None:intergenic |
| AAACTTTCTTGGAGAGAAGA+AGG | 0.493598 | 1_3:+36338632 | Msa0116850:CDS |
| TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 1_3:+36339054 | Msa0116850:CDS |
| GAATTCTAGAGGCCTTAACT+TGG | 0.530248 | 1_3:-36339243 | None:intergenic |
| ACCATGTTAAGGGGTGTACC+TGG | 0.546120 | 1_3:-36339144 | None:intergenic |
| CACGTTGAGAATCTCATCAC+TGG | 0.554104 | 1_3:+36338513 | Msa0116850:CDS |
| CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 1_3:-36338541 | None:intergenic |
| AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 1_3:+36338544 | Msa0116850:CDS |
| ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 1_3:+36339066 | Msa0116850:CDS |
| CTCATCACTGGTGTTACCAA+GGG | 0.573994 | 1_3:+36338525 | Msa0116850:CDS |
| GAGAGCAGTTCTAATGGCGG+CGG | 0.574494 | 1_3:-36338487 | None:intergenic |
| TCTCATCACTGGTGTTACCA+AGG | 0.595050 | 1_3:+36338524 | Msa0116850:CDS |
| ACCAGGTACACCCCTTAACA+TGG | 0.622058 | 1_3:+36339143 | Msa0116850:CDS |
| GTCATGTGCACTTATTAACC+AGG | 0.625933 | 1_3:+36339126 | Msa0116850:CDS |
| TGGTGATGCTAGCGTTAATG+GGG | 0.627572 | 1_3:-36338584 | None:intergenic |
| TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 1_3:+36339060 | Msa0116850:CDS |
| AAACTAAGGGAGAATTCTAG+AGG | 0.647791 | 1_3:-36339254 | None:intergenic |
| TGTTCATGGACCATGTTAAG+GGG | 0.649331 | 1_3:-36339153 | None:intergenic |
| GCTGAGAGCAGTTCTAATGG+CGG | 0.687335 | 1_3:-36338490 | None:intergenic |
| ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 1_3:-36338551 | None:intergenic |
| CAGTGATGAGATTCTCAACG+TGG | 0.725921 | 1_3:-36338512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATATCATATAACTTTT+AGG | - | chr1_3:36336507-36336526 | None:intergenic | 10.0% |
| !!! | TATATGATATTTTTATGATA+AGG | + | chr1_3:36336513-36336532 | Msa0116850:intron | 10.0% |
| !! | CTTTAAATTGATAAAAAAAA+TGG | + | chr1_3:36337027-36337046 | Msa0116850:intron | 10.0% |
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr1_3:36338686-36338705 | Msa0116850:intron | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr1_3:36338753-36338772 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr1_3:36338754-36338773 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | + | chr1_3:36338896-36338915 | Msa0116850:intron | 10.0% |
| !! | GGTATGTTAATAAATTTATT+TGG | + | chr1_3:36335914-36335933 | Msa0116850:intron | 15.0% |
| !!! | TGTTTTGTTTAAAAATTGAA+AGG | + | chr1_3:36336046-36336065 | Msa0116850:intron | 15.0% |
| !!! | GTTTTGTTTAAAAATTGAAA+GGG | + | chr1_3:36336047-36336066 | Msa0116850:intron | 15.0% |
| !! | ATAAATTTAACAACATATCA+TGG | + | chr1_3:36336102-36336121 | Msa0116850:intron | 15.0% |
| !! | TAAATTTAACAACATATCAT+GGG | + | chr1_3:36336103-36336122 | Msa0116850:intron | 15.0% |
| !!! | ATTCATACACTAATTTTTTA+AGG | - | chr1_3:36336162-36336181 | None:intergenic | 15.0% |
| !! | AATATAGTATTATTGCTTAA+TGG | + | chr1_3:36336646-36336665 | Msa0116850:intron | 15.0% |
| !!! | TACATACATTTTTTATGATA+TGG | + | chr1_3:36336910-36336929 | Msa0116850:intron | 15.0% |
| !!! | AAGGGAAATATATATAATTT+TGG | - | chr1_3:36336977-36336996 | None:intergenic | 15.0% |
| !! | TATAAAGTCAGAAATTTAAA+GGG | - | chr1_3:36336995-36337014 | None:intergenic | 15.0% |
| !! | ATATAAAGTCAGAAATTTAA+AGG | - | chr1_3:36336996-36337015 | None:intergenic | 15.0% |
| !! | TTGATAAAAAAAATGGTATA+AGG | + | chr1_3:36337034-36337053 | Msa0116850:intron | 15.0% |
| !! | AGAAAATATAAATATAAGAG+GGG | - | chr1_3:36337716-36337735 | None:intergenic | 15.0% |
| !! | GAGAAAATATAAATATAAGA+GGG | - | chr1_3:36337717-36337736 | None:intergenic | 15.0% |
| !! | AGAGAAAATATAAATATAAG+AGG | - | chr1_3:36337718-36337737 | None:intergenic | 15.0% |
| !!! | TTTGATAATATATATTGAGT+AGG | + | chr1_3:36337740-36337759 | Msa0116850:intron | 15.0% |
| !! | TATATATATCCTATATCTAT+TGG | + | chr1_3:36337830-36337849 | Msa0116850:intron | 15.0% |
| !! | TTTATAAAATGAAATGTTCT+TGG | - | chr1_3:36337993-36338012 | None:intergenic | 15.0% |
| !!! | ATTTTATAAAAGTTACAAGA+CGG | + | chr1_3:36338003-36338022 | Msa0116850:intron | 15.0% |
| !!! | TAATAATTTTCGTATATTAC+AGG | + | chr1_3:36338794-36338813 | Msa0116850:intron | 15.0% |
| !! | TTGATTATGAATAAGGATTT+AGG | + | chr1_3:36335753-36335772 | Msa0116850:intron | 20.0% |
| !!! | TGATATTTTTATGATAAGGT+AGG | + | chr1_3:36336517-36336536 | Msa0116850:intron | 20.0% |
| !! | ATAAACATCAAAATCTTCTA+TGG | - | chr1_3:36336809-36336828 | None:intergenic | 20.0% |
| !! | TATCTATGTTACCATATTAT+AGG | + | chr1_3:36336858-36336877 | Msa0116850:intron | 20.0% |
| !!! | AATTTTGGCACATTATAATT+GGG | - | chr1_3:36336962-36336981 | None:intergenic | 20.0% |
| !!! | TAATTTTGGCACATTATAAT+TGG | - | chr1_3:36336963-36336982 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTTATAGGAAAAA+TGG | + | chr1_3:36337387-36337406 | Msa0116850:intron | 20.0% |
| !!! | GTTTTTCTTATAGGAAAAAT+GGG | + | chr1_3:36337388-36337407 | Msa0116850:intron | 20.0% |
| !!! | TTTTTCTTATAGGAAAAATG+GGG | + | chr1_3:36337389-36337408 | Msa0116850:intron | 20.0% |
| !! | AAATCCTCTAATAATAATTG+CGG | - | chr1_3:36337597-36337616 | None:intergenic | 20.0% |
| !! | ATCTAAGAAAAACTGTAATA+AGG | - | chr1_3:36337642-36337661 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTTTTCTTTTTGA+GGG | + | chr1_3:36337678-36337697 | Msa0116850:intron | 20.0% |
| !! | TTTGTAAATTTGTATTAGAG+TGG | + | chr1_3:36338095-36338114 | Msa0116850:intron | 20.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr1_3:36338720-36338739 | None:intergenic | 20.0% |
| !!! | AAATGAGTTAATCTTTTATC+CGG | + | chr1_3:36338864-36338883 | Msa0116850:intron | 20.0% |
| !!! | ATTAACTCATTTTTAATCAC+CGG | - | chr1_3:36338886-36338905 | None:intergenic | 20.0% |
| ! | TGTGTGATTGATTATGAATA+AGG | + | chr1_3:36335746-36335765 | Msa0116850:intron | 25.0% |
| !!! | ATTTAGGTTGTGTTTGATTT+TGG | + | chr1_3:36335769-36335788 | Msa0116850:intron | 25.0% |
| ! | TATTAACATACCTTAAACTC+AGG | - | chr1_3:36335906-36335925 | None:intergenic | 25.0% |
| ! | TATATTACTAAACCTGTACT+TGG | - | chr1_3:36336130-36336149 | None:intergenic | 25.0% |
| ! | TAAAAATAACATACCAGCTT+TGG | - | chr1_3:36336317-36336336 | None:intergenic | 25.0% |
| ! | GAAATGTATAGCCTATAATA+TGG | - | chr1_3:36336872-36336891 | None:intergenic | 25.0% |
| ! | GTTTAGATAACGCTTTATAA+AGG | - | chr1_3:36337115-36337134 | None:intergenic | 25.0% |
| !!! | AGTAGTGTTGTTTTTCTTAT+AGG | + | chr1_3:36337379-36337398 | Msa0116850:intron | 25.0% |
| ! | ACAATTATGAATCATGTCAA+TGG | - | chr1_3:36337457-36337476 | None:intergenic | 25.0% |
| ! | TATTATTAGAGGATTTCTGT+CGG | + | chr1_3:36337601-36337620 | Msa0116850:intron | 25.0% |
| !!! | GTTGTTTCTTTTTCTTTTTG+AGG | + | chr1_3:36337677-36337696 | Msa0116850:intron | 25.0% |
| ! | GATAATATATATTGAGTAGG+TGG | + | chr1_3:36337743-36337762 | Msa0116850:intron | 25.0% |
| ! | TTAGATGTGTCAACTTAATT+GGG | + | chr1_3:36337785-36337804 | Msa0116850:intron | 25.0% |
| !!! | TCCTATATCTATTGGTTTAT+CGG | + | chr1_3:36337838-36337857 | Msa0116850:intron | 25.0% |
| ! | CAAATAATGTATGTATTAGC+CGG | + | chr1_3:36337892-36337911 | Msa0116850:intron | 25.0% |
| !! | CTTTGAAAAATTAGTTGTTC+CGG | - | chr1_3:36337914-36337933 | None:intergenic | 25.0% |
| !!! | TGAGAAGAATAGAAGTTTTT+TGG | - | chr1_3:36338434-36338453 | None:intergenic | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr1_3:36338930-36338949 | Msa0116850:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr1_3:36339003-36339022 | Msa0116850:intron | 25.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | - | chr1_3:36339170-36339189 | None:intergenic | 25.0% |
| AAAAATCACAATCACAACGA+AGG | - | chr1_3:36335821-36335840 | None:intergenic | 30.0% | |
| CAAGAAAATGGTATAGATTG+CGG | + | chr1_3:36336236-36336255 | Msa0116850:intron | 30.0% | |
| AAGAAAATGGTATAGATTGC+GGG | + | chr1_3:36336237-36336256 | Msa0116850:intron | 30.0% | |
| TGAAATGACATCATTCTTCT+TGG | - | chr1_3:36336477-36336496 | None:intergenic | 30.0% | |
| ! | CTCAATATATTTGCTAGAAG+TGG | + | chr1_3:36336550-36336569 | Msa0116850:intron | 30.0% |
| ! | TATTGCTTAATGGTGTTTTC+TGG | + | chr1_3:36336656-36336675 | Msa0116850:intron | 30.0% |
| !! | GTGTTTTCTGGTATATATTC+AGG | + | chr1_3:36336668-36336687 | Msa0116850:intron | 30.0% |
| !! | TTTTCTGGTATATATTCAGG+TGG | + | chr1_3:36336671-36336690 | Msa0116850:intron | 30.0% |
| ATGGTAACATAGATATCTCT+AGG | - | chr1_3:36336853-36336872 | None:intergenic | 30.0% | |
| !! | TATAAAGGAAAAAAAGCGCT+AGG | - | chr1_3:36337100-36337119 | None:intergenic | 30.0% |
| !!! | ATTTTTGAAAGCGCTATCTA+AGG | + | chr1_3:36337187-36337206 | Msa0116850:intron | 30.0% |
| !! | CTTCAGCTTGTTATTAATTC+TGG | + | chr1_3:36337477-36337496 | Msa0116850:intron | 30.0% |
| TTTGCCGCAATTATTATTAG+AGG | + | chr1_3:36337590-36337609 | Msa0116850:intron | 30.0% | |
| ATTATTAGAGGATTTCTGTC+GGG | + | chr1_3:36337602-36337621 | Msa0116850:intron | 30.0% | |
| !! | CTTTTTCTTTTTGAGGGTTT+TGG | + | chr1_3:36337684-36337703 | Msa0116850:intron | 30.0% |
| GTTAGATGTGTCAACTTAAT+TGG | + | chr1_3:36337784-36337803 | Msa0116850:intron | 30.0% | |
| TCCGATAAACCAATAGATAT+AGG | - | chr1_3:36337842-36337861 | None:intergenic | 30.0% | |
| !!! | AGAAGTTTTTTGGAGTAGAA+GGG | - | chr1_3:36338424-36338443 | None:intergenic | 30.0% |
| !!! | TAGAAGTTTTTTGGAGTAGA+AGG | - | chr1_3:36338425-36338444 | None:intergenic | 30.0% |
| GTCTGATTTATTTGGTTATC+TGG | + | chr1_3:36338938-36338957 | Msa0116850:intron | 30.0% | |
| ! | TTTACTAGTTTGAGAATCTG+TGG | + | chr1_3:36338976-36338995 | Msa0116850:intron | 30.0% |
| GAATAATGTTGTATTAGGTG+AGG | + | chr1_3:36339008-36339027 | Msa0116850:intron | 30.0% | |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | + | chr1_3:36339210-36339229 | Msa0116850:CDS | 30.0% |
| !! | TTGATTTTGGTGTGGTGATT+AGG | + | chr1_3:36335782-36335801 | Msa0116850:intron | 35.0% |
| ! | TCTATACCATTTTCTTGGCA+AGG | - | chr1_3:36336233-36336252 | None:intergenic | 35.0% |
| ! | CGCAATCTATACCATTTTCT+TGG | - | chr1_3:36336238-36336257 | None:intergenic | 35.0% |
| CATTTCTATCCAAAACAAGC+AGG | - | chr1_3:36336748-36336767 | None:intergenic | 35.0% | |
| AACAAAAACGCTGTCTTAGA+TGG | + | chr1_3:36337158-36337177 | Msa0116850:intron | 35.0% | |
| !!! | TTTTGAAGCGCTACTGTAAA+TGG | - | chr1_3:36337313-36337332 | None:intergenic | 35.0% |
| !!! | CAGGGAATCCAGAATTTTTT+TGG | + | chr1_3:36337422-36337441 | Msa0116850:intron | 35.0% |
| !!! | TCCAGAATTTTTTTGGCTTG+AGG | + | chr1_3:36337429-36337448 | Msa0116850:intron | 35.0% |
| TCCTCAAGCCAAAAAAATTC+TGG | - | chr1_3:36337433-36337452 | None:intergenic | 35.0% | |
| TGTTGAACCAAGATACTCTA+GGG | - | chr1_3:36337569-36337588 | None:intergenic | 35.0% | |
| ! | AAGAGTGAAGGAATGAGTTT+TGG | - | chr1_3:36338215-36338234 | None:intergenic | 35.0% |
| !!! | GAAGTTTTTTGGAGTAGAAG+GGG | - | chr1_3:36338423-36338442 | None:intergenic | 35.0% |
| ATTGAGATCCGAAACTTTCT+TGG | + | chr1_3:36338621-36338640 | Msa0116850:CDS | 35.0% | |
| TCTTCTCTCCAAGAAAGTTT+CGG | - | chr1_3:36338632-36338651 | None:intergenic | 35.0% | |
| AAACTTTCTTGGAGAGAAGA+AGG | + | chr1_3:36338632-36338651 | Msa0116850:CDS | 35.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr1_3:36339028-36339047 | Msa0116850:CDS | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr1_3:36339054-36339073 | Msa0116850:CDS | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr1_3:36339104-36339123 | Msa0116850:CDS | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | - | chr1_3:36339157-36339176 | None:intergenic | 35.0% | |
| !! | GGTTGTGTTTGATTTTGGTG+TGG | + | chr1_3:36335774-36335793 | Msa0116850:intron | 40.0% |
| ATACCTTAAACTCAGGCACA+AGG | - | chr1_3:36335899-36335918 | None:intergenic | 40.0% | |
| TAGTGTCCTTGCCAAGAAAA+TGG | + | chr1_3:36336224-36336243 | Msa0116850:intron | 40.0% | |
| ACTAAACGAGATTCCAAAGC+TGG | + | chr1_3:36336301-36336320 | Msa0116850:intron | 40.0% | |
| TCTGGTATATATTCAGGTGG+AGG | + | chr1_3:36336674-36336693 | Msa0116850:intron | 40.0% | |
| !! | GATGATTTGCCTGCTTGTTT+TGG | + | chr1_3:36336736-36336755 | Msa0116850:intron | 40.0% |
| GCTGTCTTCATCTATCTTCT+TGG | - | chr1_3:36336780-36336799 | None:intergenic | 40.0% | |
| !! | TGTCAAAAAGCGCTAGCAAA+GGG | - | chr1_3:36337216-36337235 | None:intergenic | 40.0% |
| !! | ATGTCAAAAAGCGCTAGCAA+AGG | - | chr1_3:36337217-36337236 | None:intergenic | 40.0% |
| ! | ATAAAGCGCTAGCTAAAGCA+TGG | - | chr1_3:36337255-36337274 | None:intergenic | 40.0% |
| GCAGATAAACTAGCAACTCA+TGG | + | chr1_3:36337534-36337553 | Msa0116850:intron | 40.0% | |
| GTGTTGAACCAAGATACTCT+AGG | - | chr1_3:36337570-36337589 | None:intergenic | 40.0% | |
| ! | ATGCATGTCTTTTGTTCACG+TGG | - | chr1_3:36338076-36338095 | None:intergenic | 40.0% |
| ATGACAATGTGTGAATGGAG+GGG | - | chr1_3:36338160-36338179 | None:intergenic | 40.0% | |
| CATGACAATGTGTGAATGGA+GGG | - | chr1_3:36338161-36338180 | None:intergenic | 40.0% | |
| ACATGACAATGTGTGAATGG+AGG | - | chr1_3:36338162-36338181 | None:intergenic | 40.0% | |
| TCCATTCACACATTGTCATG+TGG | + | chr1_3:36338161-36338180 | Msa0116850:intron | 40.0% | |
| ACCACATGACAATGTGTGAA+TGG | - | chr1_3:36338165-36338184 | None:intergenic | 40.0% | |
| TCTAAATGAGTGACTCATCC+TGG | + | chr1_3:36338184-36338203 | Msa0116850:intron | 40.0% | |
| !! | TGAAGGAATGAGTTTTGGTG+GGG | - | chr1_3:36338210-36338229 | None:intergenic | 40.0% |
| !! | GTGAAGGAATGAGTTTTGGT+GGG | - | chr1_3:36338211-36338230 | None:intergenic | 40.0% |
| !! | AGTGAAGGAATGAGTTTTGG+TGG | - | chr1_3:36338212-36338231 | None:intergenic | 40.0% |
| AGTGAAAAGGGAAAGAGTGA+AGG | - | chr1_3:36338227-36338246 | None:intergenic | 40.0% | |
| GAAGTGAGTGAGAGTGAAAA+GGG | - | chr1_3:36338239-36338258 | None:intergenic | 40.0% | |
| AATCATTCCATTCGTAAGCG+AGG | + | chr1_3:36338391-36338410 | Msa0116850:intron | 40.0% | |
| TTCTTCTCAAGATCGATGCT+TGG | + | chr1_3:36338445-36338464 | Msa0116850:intron | 40.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr1_3:36338554-36338573 | None:intergenic | 40.0% | |
| !! | TTGGTGATGCTAGCGTTAAT+GGG | - | chr1_3:36338588-36338607 | None:intergenic | 40.0% |
| !! | ATTGGTGATGCTAGCGTTAA+TGG | - | chr1_3:36338589-36338608 | None:intergenic | 40.0% |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr1_3:36338607-36338626 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr1_3:36339079-36339098 | Msa0116850:CDS | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | + | chr1_3:36339126-36339145 | Msa0116850:CDS | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr1_3:36339156-36339175 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr1_3:36339158-36339177 | None:intergenic | 40.0% | |
| GGAACAGAAATGCCAAGTTA+AGG | + | chr1_3:36339231-36339250 | Msa0116850:CDS | 40.0% | |
| ! | GAATTCTAGAGGCCTTAACT+TGG | - | chr1_3:36339246-36339265 | None:intergenic | 40.0% |
| ! | GTGGTGATTAGGTTGTTGAG+TGG | + | chr1_3:36335793-36335812 | Msa0116850:intron | 45.0% |
| CATATCATGGGTCCAAGTAC+AGG | + | chr1_3:36336115-36336134 | Msa0116850:intron | 45.0% | |
| ATTGCGGGTACTTTGTGATG+AGG | + | chr1_3:36336252-36336271 | Msa0116850:intron | 45.0% | |
| ATTCAGGTGGAGGATTCAAG+TGG | + | chr1_3:36336684-36336703 | Msa0116850:intron | 45.0% | |
| GGAGGAGAGTGAACGAAATT+TGG | + | chr1_3:36336705-36336724 | Msa0116850:intron | 45.0% | |
| TGCTCTAACATTTACCGCGA+AGG | + | chr1_3:36337501-36337520 | Msa0116850:intron | 45.0% | |
| ! | ATAGCAGCCCTAGAGTATCT+TGG | + | chr1_3:36337559-36337578 | Msa0116850:intron | 45.0% |
| TAGAGGATTTCTGTCGGGAT+AGG | + | chr1_3:36337607-36337626 | Msa0116850:intron | 45.0% | |
| GATTTCTGTCGGGATAGGAA+TGG | + | chr1_3:36337612-36337631 | Msa0116850:intron | 45.0% | |
| GGTGATACACATACCACCAT+AGG | + | chr1_3:36338116-36338135 | Msa0116850:intron | 45.0% | |
| GATACACATACCACCATAGG+TGG | + | chr1_3:36338119-36338138 | Msa0116850:intron | 45.0% | |
| GGAAGTGAGTGAGAGTGAAA+AGG | - | chr1_3:36338240-36338259 | None:intergenic | 45.0% | |
| AGAGAAGTGAGAGAGATCGA+TGG | - | chr1_3:36338261-36338280 | None:intergenic | 45.0% | |
| TGGCAGACGAGAAAGAAAGA+GGG | - | chr1_3:36338321-36338340 | None:intergenic | 45.0% | |
| TGATTTCATCCTGCATCAGC+AGG | - | chr1_3:36338376-36338395 | None:intergenic | 45.0% | |
| CTCAAGATCGATGCTTGGTT+TGG | + | chr1_3:36338450-36338469 | Msa0116850:intron | 45.0% | |
| CAGTGATGAGATTCTCAACG+TGG | - | chr1_3:36338515-36338534 | None:intergenic | 45.0% | |
| CACGTTGAGAATCTCATCAC+TGG | + | chr1_3:36338513-36338532 | Msa0116850:CDS | 45.0% | |
| !! | TCTCATCACTGGTGTTACCA+AGG | + | chr1_3:36338524-36338543 | Msa0116850:CDS | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | + | chr1_3:36338525-36338544 | Msa0116850:CDS | 45.0% |
| ! | TGGTGATGCTAGCGTTAATG+GGG | - | chr1_3:36338587-36338606 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr1_3:36339060-36339079 | Msa0116850:CDS | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr1_3:36339066-36339085 | Msa0116850:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr1_3:36339075-36339094 | Msa0116850:CDS | 45.0% |
| TCGCCTTGTGCCTGAGTTTA+AGG | + | chr1_3:36335893-36335912 | Msa0116850:intron | 50.0% | |
| ATTGAAAGGGACGCTCTGCA+AGG | + | chr1_3:36336060-36336079 | Msa0116850:intron | 50.0% | |
| TTGAAAGGGACGCTCTGCAA+GGG | + | chr1_3:36336061-36336080 | Msa0116850:intron | 50.0% | |
| AAAATGGGGCCTGTATGAGC+AGG | + | chr1_3:36337403-36337422 | Msa0116850:intron | 50.0% | |
| AAATGGGGCCTGTATGAGCA+GGG | + | chr1_3:36337404-36337423 | Msa0116850:intron | 50.0% | |
| TCTGGATTCCCTGCTCATAC+AGG | - | chr1_3:36337415-36337434 | None:intergenic | 50.0% | |
| CTGCACAACAGTTTCCTTCG+CGG | - | chr1_3:36337518-36337537 | None:intergenic | 50.0% | |
| TCTCGTTGCAGCTCTCTTGA+AGG | + | chr1_3:36338039-36338058 | Msa0116850:intron | 50.0% | |
| TAGGAGTGGTATGCCACCTA+TGG | - | chr1_3:36338135-36338154 | None:intergenic | 50.0% | |
| ! | ATGTGTGAATGGAGGGGTGT+AGG | - | chr1_3:36338154-36338173 | None:intergenic | 50.0% |
| ! | GGTGGTTAAGAGGAGTGTAG+TGG | - | chr1_3:36338292-36338311 | None:intergenic | 50.0% |
| AAAGAAAGAGGGAGTGGTGG+TGG | - | chr1_3:36338310-36338329 | None:intergenic | 50.0% | |
| GAGAAAGAAAGAGGGAGTGG+TGG | - | chr1_3:36338313-36338332 | None:intergenic | 50.0% | |
| GACGAGAAAGAAAGAGGGAG+TGG | - | chr1_3:36338316-36338335 | None:intergenic | 50.0% | |
| GTGGCAGACGAGAAAGAAAG+AGG | - | chr1_3:36338322-36338341 | None:intergenic | 50.0% | |
| TGCATCAGCAGGAGAGGATT+CGG | - | chr1_3:36338365-36338384 | None:intergenic | 50.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr1_3:36338457-36338476 | Msa0116850:CDS | 50.0% |
| ! | GCTGAGAGCAGTTCTAATGG+CGG | - | chr1_3:36338493-36338512 | None:intergenic | 50.0% |
| ! | GTGGCTGAGAGCAGTTCTAA+TGG | - | chr1_3:36338496-36338515 | None:intergenic | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr1_3:36338544-36338563 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr1_3:36338544-36338563 | Msa0116850:CDS | 50.0% | |
| ACCAGGTACACCCCTTAACA+TGG | + | chr1_3:36339143-36339162 | Msa0116850:CDS | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr1_3:36339147-36339166 | None:intergenic | 50.0% |
| CAGGTGGAGGATTCAAGTGG+AGG | + | chr1_3:36336687-36336706 | Msa0116850:intron | 55.0% | |
| AGCGCTACTGTAAATGGCGC+TGG | - | chr1_3:36337307-36337326 | None:intergenic | 55.0% | |
| GAGTGGTATGCCACCTATGG+TGG | - | chr1_3:36338132-36338151 | None:intergenic | 55.0% | |
| ! | TGAATGGAGGGGTGTAGGAG+TGG | - | chr1_3:36338149-36338168 | None:intergenic | 55.0% |
| !! | GAATGAGTTTTGGTGGGGCC+AGG | - | chr1_3:36338205-36338224 | None:intergenic | 55.0% |
| !! | AGGGAGTGGTGGTGGTTAAG+AGG | - | chr1_3:36338302-36338321 | None:intergenic | 55.0% |
| CTCGTCTGCCACCACCATAA+CGG | + | chr1_3:36338330-36338349 | Msa0116850:intron | 55.0% | |
| ATCAGCAGGAGAGGATTCGG+TGG | - | chr1_3:36338362-36338381 | None:intergenic | 55.0% | |
| GAATCCTCTCCTGCTGATGC+AGG | + | chr1_3:36338364-36338383 | Msa0116850:intron | 55.0% | |
| TCATCCTGCATCAGCAGGAG+AGG | - | chr1_3:36338371-36338390 | None:intergenic | 55.0% | |
| GCTTCGACCTCGCTTACGAA+TGG | - | chr1_3:36338401-36338420 | None:intergenic | 55.0% | |
| ! | GAGAGCAGTTCTAATGGCGG+CGG | - | chr1_3:36338490-36338509 | None:intergenic | 55.0% |
| CTCAGGCACAAGGCGAACTC+AGG | - | chr1_3:36335889-36335908 | None:intergenic | 60.0% | |
| !! | TTCGGTGGTGGTGGCCGTTA+TGG | - | chr1_3:36338347-36338366 | None:intergenic | 60.0% |
| !! | AGGAGAGGATTCGGTGGTGG+TGG | - | chr1_3:36338356-36338375 | None:intergenic | 60.0% |
| !! | AGCAGGAGAGGATTCGGTGG+TGG | - | chr1_3:36338359-36338378 | None:intergenic | 60.0% |
| ! | AATGGCGGCGGAGGTTTTCC+TGG | - | chr1_3:36338478-36338497 | None:intergenic | 60.0% |
| ! | AGCAGTTCTAATGGCGGCGG+AGG | - | chr1_3:36338487-36338506 | None:intergenic | 60.0% |
| ! | GGTGGTGGCCGTTATGGTGG+TGG | - | chr1_3:36338341-36338360 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGCCGTTATGG+TGG | - | chr1_3:36338344-36338363 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 36335743 | 36339273 | 36335743 | ID=Msa0116850;Name=Msa0116850 |
| chr1_3 | mRNA | 36335743 | 36339273 | 36335743 | ID=Msa0116850-mRNA-1;Parent=Msa0116850;Name=Msa0116850-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0|0.5|0.33|0.25|4|0|152 |
| chr1_3 | exon | 36335743 | 36335748 | 36335743 | ID=Msa0116850-mRNA-1:exon:11671;Parent=Msa0116850-mRNA-1 |
| chr1_3 | exon | 36335862 | 36335867 | 36335862 | ID=Msa0116850-mRNA-1:exon:11672;Parent=Msa0116850-mRNA-1 |
| chr1_3 | exon | 36338456 | 36338653 | 36338456 | ID=Msa0116850-mRNA-1:exon:11673;Parent=Msa0116850-mRNA-1 |
| chr1_3 | exon | 36339025 | 36339273 | 36339025 | ID=Msa0116850-mRNA-1:exon:11674;Parent=Msa0116850-mRNA-1 |
| chr1_3 | CDS | 36335743 | 36335748 | 36335743 | ID=Msa0116850-mRNA-1:cds;Parent=Msa0116850-mRNA-1 |
| chr1_3 | CDS | 36335862 | 36335867 | 36335862 | ID=Msa0116850-mRNA-1:cds;Parent=Msa0116850-mRNA-1 |
| chr1_3 | CDS | 36338456 | 36338653 | 36338456 | ID=Msa0116850-mRNA-1:cds;Parent=Msa0116850-mRNA-1 |
| chr1_3 | CDS | 36339025 | 36339273 | 36339025 | ID=Msa0116850-mRNA-1:cds;Parent=Msa0116850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
