Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210850 | sp|Q94JX5|WLIM1_ARATH | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.51e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210850 | G7JNV0 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 7.90e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1210850 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1210150 | Msa1210850 | 0.968963 | 1.981016e-129 | -8.615850e-47 |
| Msa1210250 | Msa1210850 | 0.865322 | 6.425495e-65 | -8.615850e-47 |
| Msa1210850 | Msa1259260 | 0.800005 | 1.765265e-48 | -8.615850e-47 |
| Msa1210850 | Msa1396720 | 0.960312 | 2.047379e-118 | -8.615850e-47 |
| Msa1210850 | Msa1425760 | 0.963315 | 6.183736e-122 | -8.615850e-47 |
| Msa0512640 | Msa1210850 | 0.802607 | 5.177498e-49 | -8.615850e-47 |
| Msa0570600 | Msa1210850 | 0.800274 | 1.556177e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210850 | MtrunA17_Chr4g0059371 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.52e-130 | 363 |
| Msa1210850 | MtrunA17_Chr1g0152431 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 2.70e-89 | 259 |
| Msa1210850 | MtrunA17_Chr3g0113051 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.11e-69 | 208 |
| Msa1210850 | MtrunA17_Chr8g0386501 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.17e-62 | 191 |
| Msa1210850 | MtrunA17_Chr8g0386501 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 5.81e-20 | 83.2 |
| Msa1210850 | MtrunA17_Chr8g0349391 | 50.279 | 179 | 76 | 2 | 3 | 177 | 2 | 171 | 5.76e-60 | 185 |
| Msa1210850 | MtrunA17_Chr7g0247111 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 4.86e-58 | 181 |
| Msa1210850 | MtrunA17_Chr7g0247111 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 1.71e-15 | 71.2 |
| Msa1210850 | MtrunA17_Chr7g0247111 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210850 | AT1G10200.1 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.53e-90 | 263 |
| Msa1210850 | AT3G55770.3 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210850 | AT3G55770.5 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210850 | AT3G55770.2 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210850 | AT3G55770.1 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210850 | AT2G39900.1 | 53.073 | 179 | 84 | 0 | 3 | 181 | 2 | 180 | 5.29e-69 | 208 |
| Msa1210850 | AT3G61230.1 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 8.14e-67 | 203 |
| Msa1210850 | AT3G61230.1 | 41.758 | 91 | 53 | 0 | 4 | 94 | 100 | 190 | 4.36e-18 | 78.6 |
| Msa1210850 | AT3G61230.1 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 6.22e-16 | 72.8 |
| Msa1210850 | AT1G01780.1 | 52.326 | 172 | 75 | 2 | 3 | 173 | 2 | 167 | 5.38e-63 | 193 |
| Msa1210850 | AT1G01780.1 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.80e-17 | 75.9 |
| Msa1210850 | AT2G45800.1 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 8.07e-63 | 194 |
| Msa1210850 | AT2G45800.1 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 8.68e-18 | 78.2 |
| Msa1210850 | AT2G45800.1 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.43e-16 | 74.7 |
| Msa1210850 | AT3G55770.7 | 47.196 | 214 | 76 | 3 | 3 | 181 | 2 | 213 | 1.08e-62 | 194 |
| Msa1210850 | AT1G10200.2 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.45e-62 | 190 |
| Msa1210850 | AT1G10200.2 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.86e-16 | 72.4 |
| Msa1210850 | AT3G55770.4 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.84e-43 | 141 |
| Msa1210850 | AT3G55770.4 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.32e-18 | 77.0 |
| Msa1210850 | AT2G45800.2 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.42e-42 | 141 |
| Msa1210850 | AT2G45800.2 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.25e-18 | 78.6 |
| Msa1210850 | AT3G55770.6 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.91e-40 | 134 |
| Msa1210850 | AT3G55770.6 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.03e-18 | 77.4 |
Find 41 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8_1:+70074462 | Msa1210850:CDS |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8_1:-70074455 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8_1:+70073106 | Msa1210850:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8_1:+70071892 | Msa1210850:exon |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8_1:+70071935 | Msa1210850:CDS |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | 8_1:-70074401 | None:intergenic |
| AGTAGTAATCATGTTCATAT+TGG | 0.418531 | 8_1:-70071748 | None:intergenic |
| CAAGTTATATAATATCTGTT+TGG | 0.431157 | 8_1:+70074630 | Msa1210850:three_prime_UTR |
| AATGACACTGTTACAATACT+TGG | 0.434857 | 8_1:+70074585 | Msa1210850:three_prime_UTR |
| TTTCTTTCAAATTCAGTGTA+GGG | 0.440988 | 8_1:-70071818 | None:intergenic |
| GAAGCAAGCAAGAGACTCAT+TGG | 0.444861 | 8_1:+70071845 | Msa1210850:five_prime_UTR |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8_1:-70074372 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | 8_1:-70074419 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8_1:+70074446 | Msa1210850:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8_1:+70074322 | Msa1210850:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8_1:+70073281 | Msa1210850:CDS |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8_1:+70073098 | Msa1210850:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8_1:+70073461 | Msa1210850:CDS |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8_1:-70073089 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8_1:-70074326 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | 8_1:+70074422 | Msa1210850:CDS |
| TTCTTTCAAATTCAGTGTAG+GGG | 0.532949 | 8_1:-70071817 | None:intergenic |
| TGCCATCTCAAATTCTCACT+TGG | 0.533651 | 8_1:-70071881 | None:intergenic |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8_1:+70072002 | Msa1210850:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8_1:-70072011 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8_1:+70074333 | Msa1210850:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8_1:+70072003 | Msa1210850:CDS |
| AATGTGTCTGAAATTAATGT+AGG | 0.578011 | 8_1:+70071725 | Msa1210850:five_prime_UTR |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8_1:+70074463 | Msa1210850:CDS |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8_1:-70072014 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8_1:+70071936 | Msa1210850:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | 8_1:+70074423 | Msa1210850:CDS |
| TTCCAAGTGAGAATTTGAGA+TGG | 0.619521 | 8_1:+70071879 | Msa1210850:exon |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8_1:+70074365 | Msa1210850:CDS |
| ACTATAATGCAACTTTGCAG+TGG | 0.646927 | 8_1:+70074520 | Msa1210850:three_prime_UTR |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8_1:+70072014 | Msa1210850:CDS |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8_1:+70074336 | Msa1210850:CDS |
| ACAGGTCGAAGCATATAACA+AGG | 0.699921 | 8_1:+70073389 | Msa1210850:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8_1:+70071939 | Msa1210850:CDS |
| TGATATATACTTGAGCTGTG+AGG | 0.730347 | 8_1:+70071792 | Msa1210850:five_prime_UTR |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8_1:-70071990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATAATGTATTT+CGG | - | chr8_1:70072500-70072519 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | + | chr8_1:70072706-70072725 | Msa1210850:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | + | chr8_1:70072836-70072855 | Msa1210850:intron | 10.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | + | chr8_1:70072123-70072142 | Msa1210850:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | + | chr8_1:70072209-70072228 | Msa1210850:intron | 15.0% |
| !! | TATTAAATCTAAATTTACTG+AGG | - | chr8_1:70072334-70072353 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | - | chr8_1:70072379-70072398 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | - | chr8_1:70073473-70073492 | None:intergenic | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | - | chr8_1:70073474-70073493 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | + | chr8_1:70073600-70073619 | Msa1210850:intron | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | - | chr8_1:70073749-70073768 | None:intergenic | 15.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | - | chr8_1:70072047-70072066 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | - | chr8_1:70072152-70072171 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | - | chr8_1:70072153-70072172 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTCAGAACTG+AGG | + | chr8_1:70072346-70072365 | Msa1210850:intron | 20.0% |
| !! | AAAAGTTCTATAACACTATT+TGG | - | chr8_1:70072743-70072762 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | - | chr8_1:70073233-70073252 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAAAGATGAGA+AGG | - | chr8_1:70073663-70073682 | None:intergenic | 20.0% |
| !! | AATAGATATATAAAATGAGC+TGG | + | chr8_1:70073857-70073876 | Msa1210850:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | + | chr8_1:70073928-70073947 | Msa1210850:intron | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | + | chr8_1:70073929-70073948 | Msa1210850:intron | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | - | chr8_1:70073948-70073967 | None:intergenic | 20.0% |
| !!! | CTGTTACTTAGATATAATAT+GGG | - | chr8_1:70073982-70074001 | None:intergenic | 20.0% |
| !! | CAAGTTATATAATATCTGTT+TGG | + | chr8_1:70074630-70074649 | Msa1210850:three_prime_UTR | 20.0% |
| !! | AATGTGTCTGAAATTAATGT+AGG | + | chr8_1:70071725-70071744 | Msa1210850:five_prime_UTR | 25.0% |
| ! | AGTAGTAATCATGTTCATAT+TGG | - | chr8_1:70071751-70071770 | None:intergenic | 25.0% |
| ! | TTTCTTTCAAATTCAGTGTA+GGG | - | chr8_1:70071821-70071840 | None:intergenic | 25.0% |
| !! | TTTTCTTTCAAATTCAGTGT+AGG | - | chr8_1:70071822-70071841 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | + | chr8_1:70071936-70071955 | Msa1210850:CDS | 25.0% |
| !!! | TCCTATGTTTTTTACATTAG+TGG | + | chr8_1:70072867-70072886 | Msa1210850:intron | 25.0% |
| ! | ACCACTAATGTAAAAAACAT+AGG | - | chr8_1:70072871-70072890 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | + | chr8_1:70073050-70073069 | Msa1210850:CDS | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | - | chr8_1:70073092-70073111 | None:intergenic | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | + | chr8_1:70073240-70073259 | Msa1210850:intron | 25.0% |
| ! | GTAACTAGTAATAATGTAAC+AGG | + | chr8_1:70073371-70073390 | Msa1210850:intron | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | - | chr8_1:70073535-70073554 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | - | chr8_1:70073536-70073555 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | + | chr8_1:70073577-70073596 | Msa1210850:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | - | chr8_1:70073582-70073601 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | - | chr8_1:70073686-70073705 | None:intergenic | 25.0% |
| !! | TATAGTTCTGTTTCAATGTT+TGG | - | chr8_1:70073831-70073850 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | - | chr8_1:70073916-70073935 | None:intergenic | 25.0% |
| !! | CCTGTTACTTAGATATAATA+TGG | - | chr8_1:70073983-70074002 | None:intergenic | 25.0% |
| ! | CCATATTATATCTAAGTAAC+AGG | + | chr8_1:70073980-70073999 | Msa1210850:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | - | chr8_1:70074105-70074124 | None:intergenic | 25.0% |
| ! | ACGTAATTTAGTGTAATCAT+AGG | + | chr8_1:70074130-70074149 | Msa1210850:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | - | chr8_1:70074263-70074282 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | + | chr8_1:70074263-70074282 | Msa1210850:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | + | chr8_1:70074264-70074283 | Msa1210850:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | + | chr8_1:70074446-70074465 | Msa1210850:CDS | 25.0% |
| TTCTTTCAAATTCAGTGTAG+GGG | - | chr8_1:70071820-70071839 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | + | chr8_1:70071935-70071954 | Msa1210850:CDS | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | + | chr8_1:70072071-70072090 | Msa1210850:intron | 30.0% | |
| ! | TGCACTTATAACCACTATTT+TGG | + | chr8_1:70072165-70072184 | Msa1210850:intron | 30.0% |
| ! | TACGAATGTTATAGGAGTAT+TGG | - | chr8_1:70072456-70072475 | None:intergenic | 30.0% |
| ACATGTCATACGAATGTTAT+AGG | - | chr8_1:70072464-70072483 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | + | chr8_1:70072652-70072671 | Msa1210850:intron | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | + | chr8_1:70072653-70072672 | Msa1210850:intron | 30.0% | |
| ! | GAGTAACTATTGTTCTTTTG+AGG | + | chr8_1:70073049-70073068 | Msa1210850:CDS | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | + | chr8_1:70073122-70073141 | Msa1210850:CDS | 30.0% |
| TTAAGCAATAACCATGTAGT+AGG | - | chr8_1:70073160-70073179 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | - | chr8_1:70073348-70073367 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | - | chr8_1:70073349-70073368 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | - | chr8_1:70073350-70073369 | None:intergenic | 30.0% | |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | + | chr8_1:70073408-70073427 | Msa1210850:CDS | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | + | chr8_1:70073546-70073565 | Msa1210850:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | - | chr8_1:70073554-70073573 | None:intergenic | 30.0% |
| CAATAAAGATGAGAAGGATA+AGG | - | chr8_1:70073657-70073676 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | - | chr8_1:70073777-70073796 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | + | chr8_1:70073888-70073907 | Msa1210850:intron | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | - | chr8_1:70074027-70074046 | None:intergenic | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | + | chr8_1:70074026-70074045 | Msa1210850:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | - | chr8_1:70074030-70074049 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | - | chr8_1:70074041-70074060 | None:intergenic | 30.0% | |
| !! | TTCTGAAATACTATGAAGCA+CGG | + | chr8_1:70074058-70074077 | Msa1210850:intron | 30.0% |
| ! | CTTCATATCTGGAATATGAT+AGG | + | chr8_1:70074215-70074234 | Msa1210850:intron | 30.0% |
| GAACAATCCCAATGAATATA+TGG | - | chr8_1:70074274-70074293 | None:intergenic | 30.0% | |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | + | chr8_1:70074281-70074300 | Msa1210850:intron | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | - | chr8_1:70074404-70074423 | None:intergenic | 30.0% |
| CTTGTTCAACCTTATCAAAT+TGG | - | chr8_1:70074458-70074477 | None:intergenic | 30.0% | |
| ATAAGGTTGAACAAGTCTAA+GGG | + | chr8_1:70074463-70074482 | Msa1210850:CDS | 30.0% | |
| AATGACACTGTTACAATACT+TGG | + | chr8_1:70074585-70074604 | Msa1210850:three_prime_UTR | 30.0% | |
| TGATATATACTTGAGCTGTG+AGG | + | chr8_1:70071792-70071811 | Msa1210850:five_prime_UTR | 35.0% | |
| TTCCAAGTGAGAATTTGAGA+TGG | + | chr8_1:70071879-70071898 | Msa1210850:exon | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | + | chr8_1:70071939-70071958 | Msa1210850:CDS | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | - | chr8_1:70072179-70072198 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | + | chr8_1:70072400-70072419 | Msa1210850:intron | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | + | chr8_1:70072521-70072540 | Msa1210850:intron | 35.0% | |
| GTTATATATGTGTCGAACAC+CGG | - | chr8_1:70072543-70072562 | None:intergenic | 35.0% | |
| ! | ACTTTTGAATCTACTGTGTG+TGG | - | chr8_1:70072622-70072641 | None:intergenic | 35.0% |
| GCATAAGGAAAAGAGGATTA+AGG | - | chr8_1:70073018-70073037 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | + | chr8_1:70073019-70073038 | Msa1210850:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | + | chr8_1:70073098-70073117 | Msa1210850:CDS | 35.0% |
| GAATAATAGCTCCTACTACA+TGG | + | chr8_1:70073146-70073165 | Msa1210850:intron | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | + | chr8_1:70073281-70073300 | Msa1210850:CDS | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | + | chr8_1:70073429-70073448 | Msa1210850:CDS | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | + | chr8_1:70073461-70073480 | Msa1210850:CDS | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | - | chr8_1:70073726-70073745 | None:intergenic | 35.0% | |
| AAAAATTTGCAGGTGCCTAA+TGG | - | chr8_1:70073906-70073925 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | + | chr8_1:70074294-70074313 | Msa1210850:intron | 35.0% |
| AATCAGTCCATCAAACTATG+TGG | + | chr8_1:70074365-70074384 | Msa1210850:CDS | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | - | chr8_1:70074422-70074441 | None:intergenic | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | + | chr8_1:70074422-70074441 | Msa1210850:CDS | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | + | chr8_1:70074423-70074442 | Msa1210850:CDS | 35.0% | |
| GATAAGGTTGAACAAGTCTA+AGG | + | chr8_1:70074462-70074481 | Msa1210850:CDS | 35.0% | |
| ACTATAATGCAACTTTGCAG+TGG | + | chr8_1:70074520-70074539 | Msa1210850:three_prime_UTR | 35.0% | |
| TGCCATCTCAAATTCTCACT+TGG | - | chr8_1:70071884-70071903 | None:intergenic | 40.0% | |
| ! | TTTGAGATGGCATCATTTGC+AGG | + | chr8_1:70071892-70071911 | Msa1210850:exon | 40.0% |
| TGTTGATCAACGAAGGGTTA+TGG | + | chr8_1:70072659-70072678 | Msa1210850:intron | 40.0% | |
| AAGTTGTCTCTTACGAAGCA+CGG | - | chr8_1:70072940-70072959 | None:intergenic | 40.0% | |
| !! | CTTTAAGATGACTGGCAGTT+TGG | + | chr8_1:70073106-70073125 | Msa1210850:CDS | 40.0% |
| ACAGGTCGAAGCATATAACA+AGG | + | chr8_1:70073389-70073408 | Msa1210850:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | - | chr8_1:70074202-70074221 | None:intergenic | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | + | chr8_1:70074204-70074223 | Msa1210850:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | + | chr8_1:70074322-70074341 | Msa1210850:CDS | 40.0% |
| TCATGTGCCACATAGTTTGA+TGG | - | chr8_1:70074375-70074394 | None:intergenic | 40.0% | |
| GAAGCAAGCAAGAGACTCAT+TGG | + | chr8_1:70071845-70071864 | Msa1210850:five_prime_UTR | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | + | chr8_1:70072003-70072022 | Msa1210850:CDS | 45.0% | |
| ! | GTCTAGAATTAGGTGTGTCG+CGG | + | chr8_1:70072427-70072446 | Msa1210850:intron | 45.0% |
| GCACCAAGCATAAGGAAAAG+AGG | - | chr8_1:70073025-70073044 | None:intergenic | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | - | chr8_1:70074015-70074034 | None:intergenic | 45.0% | |
| ATACTATGAAGCACGGTCAC+CGG | + | chr8_1:70074065-70074084 | Msa1210850:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | - | chr8_1:70074329-70074348 | None:intergenic | 45.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | - | chr8_1:70071993-70072012 | None:intergenic | 50.0% |
| CTTCAGATGCCACCATTGCA+AGG | + | chr8_1:70072002-70072021 | Msa1210850:CDS | 50.0% | |
| ! | GCACGGACACGTCTAGAATT+AGG | + | chr8_1:70072417-70072436 | Msa1210850:intron | 50.0% |
| ATTCGTGTCAGTGTCGTGTC+AGG | + | chr8_1:70072899-70072918 | Msa1210850:intron | 50.0% | |
| ACTCAGCTGCACCAAGCATA+AGG | - | chr8_1:70073033-70073052 | None:intergenic | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | - | chr8_1:70074196-70074215 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | + | chr8_1:70074333-70074352 | Msa1210850:CDS | 50.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | - | chr8_1:70072014-70072033 | None:intergenic | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | - | chr8_1:70072017-70072036 | None:intergenic | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | + | chr8_1:70072014-70072033 | Msa1210850:CDS | 55.0% |
| ACACGACACAGACACCGACA+CGG | + | chr8_1:70074088-70074107 | Msa1210850:intron | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | + | chr8_1:70074336-70074355 | Msa1210850:CDS | 55.0% | |
| ! | GTCGGTGTCTGTGTCGTGTC+CGG | - | chr8_1:70074087-70074106 | None:intergenic | 60.0% |
| GGATTAGGCGTGTCCGGTGT+CGG | - | chr8_1:70074181-70074200 | None:intergenic | 60.0% | |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | - | chr8_1:70074187-70074206 | None:intergenic | 60.0% |
| CAGCGACGCGTATCCGACAC+CGG | + | chr8_1:70074165-70074184 | Msa1210850:intron | 65.0% | |
| CACCGGACACGCCTAATCCG+AGG | + | chr8_1:70074182-70074201 | Msa1210850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 70071713 | 70074661 | 70071713 | ID=Msa1210850;Name=Msa1210850 |
| chr8_1 | mRNA | 70071713 | 70074661 | 70071713 | ID=Msa1210850-mRNA-1;Parent=Msa1210850;Name=Msa1210850-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185|1|1|1|1|1|5|179|181 |
| chr8_1 | exon | 70071713 | 70072035 | 70071713 | ID=Msa1210850-mRNA-1:exon:23406;Parent=Msa1210850-mRNA-1 |
| chr8_1 | exon | 70073047 | 70073143 | 70073047 | ID=Msa1210850-mRNA-1:exon:23407;Parent=Msa1210850-mRNA-1 |
| chr8_1 | exon | 70073262 | 70073302 | 70073262 | ID=Msa1210850-mRNA-1:exon:23408;Parent=Msa1210850-mRNA-1 |
| chr8_1 | exon | 70073393 | 70073482 | 70073393 | ID=Msa1210850-mRNA-1:exon:23409;Parent=Msa1210850-mRNA-1 |
| chr8_1 | exon | 70074303 | 70074661 | 70074303 | ID=Msa1210850-mRNA-1:exon:23410;Parent=Msa1210850-mRNA-1 |
| chr8_1 | five_prime_UTR | 70071713 | 70071897 | 70071713 | ID=Msa1210850-mRNA-1:five_prime_utr;Parent=Msa1210850-mRNA-1 |
| chr8_1 | CDS | 70071898 | 70072035 | 70071898 | ID=Msa1210850-mRNA-1:cds;Parent=Msa1210850-mRNA-1 |
| chr8_1 | CDS | 70073047 | 70073143 | 70073047 | ID=Msa1210850-mRNA-1:cds;Parent=Msa1210850-mRNA-1 |
| chr8_1 | CDS | 70073262 | 70073302 | 70073262 | ID=Msa1210850-mRNA-1:cds;Parent=Msa1210850-mRNA-1 |
| chr8_1 | CDS | 70073393 | 70073482 | 70073393 | ID=Msa1210850-mRNA-1:cds;Parent=Msa1210850-mRNA-1 |
| chr8_1 | CDS | 70074303 | 70074482 | 70074303 | ID=Msa1210850-mRNA-1:cds;Parent=Msa1210850-mRNA-1 |
| chr8_1 | three_prime_UTR | 70074483 | 70074661 | 70074483 | ID=Msa1210850-mRNA-1:three_prime_utr;Parent=Msa1210850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
