AlfalfaGEDB | Msa1425760

M. sativa cultivar zhongmu-4 / Msa1425760

KEGG: K09377
GO: -
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425760	XP_003608956.1	95.580	181	8	0	1	181	1	181	1.65e-126	363

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425760	sp\|Q94JX5\|WLIM1_ARATH	69.143	175	53	1	3	176	2	176	1.51e-89	263

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425760	G7JNV0	95.580	181	8	0	1	181	1	181	7.90e-127	363

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TFs/TRs:

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Gene ID	Type	Classification
Msa1425760	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0570600	Msa1425760	0.812139	4.927722e-51	-8.615850e-47
Msa0615780	Msa1425760	0.802689	4.980019e-49	-8.615850e-47
Msa0695140	Msa1425760	0.802720	4.908058e-49	-8.615850e-47
Msa1210150	Msa1425760	0.993853	1.043765e-202	-8.615850e-47
Msa1210250	Msa1425760	0.897758	1.030348e-76	-8.615850e-47
Msa1210850	Msa1425760	0.963315	6.183736e-122	-8.615850e-47
Msa1259260	Msa1425760	0.829527	4.897729e-55	-8.615850e-47
Msa1396720	Msa1425760	0.995234	2.813916e-214	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425760	MtrunA17_Chr4g0059371	95.580	181	8	0	1	181	1	181	1.52e-130	363
Msa1425760	MtrunA17_Chr1g0152431	67.429	175	56	1	3	176	2	176	2.70e-89	259
Msa1425760	MtrunA17_Chr3g0113051	54.945	182	77	3	3	181	2	181	5.11e-69	208
Msa1425760	MtrunA17_Chr8g0386501	50.838	179	81	2	3	181	2	173	6.17e-62	191
Msa1425760	MtrunA17_Chr8g0386501	53.521	71	33	0	2	72	93	163	5.81e-20	83.2
Msa1425760	MtrunA17_Chr8g0349391	50.279	179	76	2	3	177	2	171	5.76e-60	185
Msa1425760	MtrunA17_Chr7g0247111	49.133	173	81	2	3	173	2	169	4.86e-58	181
Msa1425760	MtrunA17_Chr7g0247111	43.038	79	45	0	4	82	99	177	1.71e-15	71.2
Msa1425760	MtrunA17_Chr7g0247111	43.056	72	41	0	103	174	3	74	3.38e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1425760	AT1G10200.1	69.143	175	53	1	3	176	2	176	1.53e-90	263
Msa1425760	AT3G55770.3	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1425760	AT3G55770.5	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1425760	AT3G55770.2	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1425760	AT3G55770.1	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1425760	AT2G39900.1	53.073	179	84	0	3	181	2	180	5.29e-69	208
Msa1425760	AT3G61230.1	53.179	173	78	1	1	173	1	170	8.14e-67	203
Msa1425760	AT3G61230.1	41.758	91	53	0	4	94	100	190	4.36e-18	78.6
Msa1425760	AT3G61230.1	44.444	72	40	0	103	174	4	75	6.22e-16	72.8
Msa1425760	AT1G01780.1	52.326	172	75	2	3	173	2	167	5.38e-63	193

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Find 41 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGTACCCAATTGAAA+AGG	0.511293	tig0025890:-9496	Msa1425760:intron
AATCAGTCCATCAAACTATG+TGG	0.634185	tig0025890:-8593	Msa1425760:CDS
AATGACACTGTTACAATACT+TGG	0.434857	tig0025890:-8373	Msa1425760:three_prime_UTR
AATGTGTCTGAAATTAATGT+AGG	0.578011	tig0025890:-11229	Msa1425760:five_prime_UTR
ACAGGTCGAAGCATATAACA+AGG	0.699921	tig0025890:-9568	Msa1425760:intron
ACTATAATGCAACTTTGCAG+TGG	0.646927	tig0025890:-8438	Msa1425760:three_prime_UTR
ACTCAGATCTTCAAACAGAA+GGG	0.607367	tig0025890:-8535	Msa1425760:CDS
ACTTGCTTCAGGTGCACACA+TGG	0.555007	tig0025890:-8625	Msa1425760:CDS
AGTAGTAATCATGTTCATAT+TGG	0.418531	tig0025890:+11206	None:intergenic
AGTTGAAAGATCAACTGATC+AGG	0.484362	tig0025890:-9676	Msa1425760:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTTCAAATTCAGTGTAG+GGG	+	tig0025890:8426-8445	None:intergenic	30.0%
CATGTGAAAAGAAAGTTTAC+TGG	-	tig0025890:8541-8560	Msa1425760:CDS	30.0%
TTTCGATGAATGCTTCAATA+AGG	-	tig0025890:8676-8695	Msa1425760:intron	30.0%
ACATGTCATACGAATGTTAT+AGG	+	tig0025890:9069-9088	None:intergenic	30.0%
TTAGAAATGTTGATCAACGA+AGG	-	tig0025890:9256-9275	Msa1425760:intron	30.0%
TAGAAATGTTGATCAACGAA+GGG	-	tig0025890:9257-9276	Msa1425760:intron	30.0%
TTAAGCAATAACCATGTAGT+AGG	+	tig0025890:9764-9783	None:intergenic	30.0%
AGACAATTTACTTTATGCAG+GGG	+	tig0025890:9951-9970	None:intergenic	30.0%
GAGACAATTTACTTTATGCA+GGG	+	tig0025890:9952-9971	None:intergenic	30.0%
AGAGACAATTTACTTTATGC+AGG	+	tig0025890:9953-9972	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025890	gene	8319	11263	8319	ID=Msa1425760;Name=Msa1425760
tig0025890	mRNA	8319	11263	8319	ID=Msa1425760-mRNA-1;Parent=Msa1425760;Name=Msa1425760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=185\|1\|1\|1\|1\|1\|5\|179\|181
tig0025890	exon	8319	8677	8319	ID=Msa1425760-mRNA-1:exon:4473;Parent=Msa1425760-mRNA-1
tig0025890	exon	9497	9586	9497	ID=Msa1425760-mRNA-1:exon:4472;Parent=Msa1425760-mRNA-1
tig0025890	exon	9677	9717	9677	ID=Msa1425760-mRNA-1:exon:4471;Parent=Msa1425760-mRNA-1
tig0025890	exon	9835	9931	9835	ID=Msa1425760-mRNA-1:exon:4470;Parent=Msa1425760-mRNA-1
tig0025890	exon	10941	11263	10941	ID=Msa1425760-mRNA-1:exon:4469;Parent=Msa1425760-mRNA-1
tig0025890	five_prime_UTR	11079	11263	11079	ID=Msa1425760-mRNA-1:five_prime_utr;Parent=Msa1425760-mRNA-1
tig0025890	CDS	10941	11078	10941	ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1
tig0025890	CDS	9835	9931	9835	ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1
tig0025890	CDS	9677	9717	9677	ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1
tig0025890	CDS	9497	9586	9497	ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1
tig0025890	CDS	8498	8677	8498	ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1
tig0025890	three_prime_UTR	8319	8497	8319	ID=Msa1425760-mRNA-1:three_prime_utr;Parent=Msa1425760-mRNA-1

Gene Sequence

>Msa1425760

ATGGCATCATTTGCAGGCACTACACAGAAATGTAATACATGTGAAAAGAAAGTTTACTGGGTGGAACAGCTCACTGCTGATAACAAAGTGTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACACTCAAGCTGAGTAACTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGTTGAAAGATCAACTGATCAGGTCGAAGCATATAACAAGGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGAATCTTACCATAAGACTTGCTTCAGGTGCACACATGGAGGTTGCATAATCAGTCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGACATCACCATACTCAGATCTTCAAACAGAAGGGTAATTTCAGCCAATTTGATAAGGTTGAACAAGTCTAA

Protein sequence

>Msa1425760

MASFAGTTQKCNTCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYRVERSTDQVEAYNKVSRFFAGTQEKCVGCKKTVYPIEKVAVDGESYHKTCFRCTHGGCIISPSNYVAHEHRLYCRHHHTQIFKQKGNFSQFDKVEQV*