Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425760 | XP_003608956.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.65e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425760 | sp|Q94JX5|WLIM1_ARATH | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.51e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425760 | G7JNV0 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 7.90e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1425760 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1396720 | Msa1425760 | 0.995234 | 2.813916e-214 | -8.615850e-47 |
| Msa0615780 | Msa1425760 | 0.802689 | 4.980019e-49 | -8.615850e-47 |
| Msa0695140 | Msa1425760 | 0.802720 | 4.908058e-49 | -8.615850e-47 |
| Msa1259260 | Msa1425760 | 0.829527 | 4.897729e-55 | -8.615850e-47 |
| Msa1210150 | Msa1425760 | 0.993853 | 1.043765e-202 | -8.615850e-47 |
| Msa1210250 | Msa1425760 | 0.897758 | 1.030348e-76 | -8.615850e-47 |
| Msa1210850 | Msa1425760 | 0.963315 | 6.183736e-122 | -8.615850e-47 |
| Msa0570600 | Msa1425760 | 0.812139 | 4.927722e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425760 | MtrunA17_Chr4g0059371 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.52e-130 | 363 |
| Msa1425760 | MtrunA17_Chr1g0152431 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 2.70e-89 | 259 |
| Msa1425760 | MtrunA17_Chr3g0113051 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.11e-69 | 208 |
| Msa1425760 | MtrunA17_Chr8g0386501 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.17e-62 | 191 |
| Msa1425760 | MtrunA17_Chr8g0386501 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 5.81e-20 | 83.2 |
| Msa1425760 | MtrunA17_Chr8g0349391 | 50.279 | 179 | 76 | 2 | 3 | 177 | 2 | 171 | 5.76e-60 | 185 |
| Msa1425760 | MtrunA17_Chr7g0247111 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 4.86e-58 | 181 |
| Msa1425760 | MtrunA17_Chr7g0247111 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 1.71e-15 | 71.2 |
| Msa1425760 | MtrunA17_Chr7g0247111 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425760 | AT1G10200.1 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.53e-90 | 263 |
| Msa1425760 | AT3G55770.3 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1425760 | AT3G55770.5 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1425760 | AT3G55770.2 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1425760 | AT3G55770.1 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1425760 | AT2G39900.1 | 53.073 | 179 | 84 | 0 | 3 | 181 | 2 | 180 | 5.29e-69 | 208 |
| Msa1425760 | AT3G61230.1 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 8.14e-67 | 203 |
| Msa1425760 | AT3G61230.1 | 41.758 | 91 | 53 | 0 | 4 | 94 | 100 | 190 | 4.36e-18 | 78.6 |
| Msa1425760 | AT3G61230.1 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 6.22e-16 | 72.8 |
| Msa1425760 | AT1G01780.1 | 52.326 | 172 | 75 | 2 | 3 | 173 | 2 | 167 | 5.38e-63 | 193 |
| Msa1425760 | AT1G01780.1 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.80e-17 | 75.9 |
| Msa1425760 | AT2G45800.1 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 8.07e-63 | 194 |
| Msa1425760 | AT2G45800.1 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 8.68e-18 | 78.2 |
| Msa1425760 | AT2G45800.1 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.43e-16 | 74.7 |
| Msa1425760 | AT3G55770.7 | 47.196 | 214 | 76 | 3 | 3 | 181 | 2 | 213 | 1.08e-62 | 194 |
| Msa1425760 | AT1G10200.2 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.45e-62 | 190 |
| Msa1425760 | AT1G10200.2 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.86e-16 | 72.4 |
| Msa1425760 | AT3G55770.4 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.84e-43 | 141 |
| Msa1425760 | AT3G55770.4 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.32e-18 | 77.0 |
| Msa1425760 | AT2G45800.2 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.42e-42 | 141 |
| Msa1425760 | AT2G45800.2 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.25e-18 | 78.6 |
| Msa1425760 | AT3G55770.6 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.91e-40 | 134 |
| Msa1425760 | AT3G55770.6 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.03e-18 | 77.4 |
Find 41 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | tig0025890:-8496 | Msa1425760:exon |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | tig0025890:+8503 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | tig0025890:-9850 | Msa1425760:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | tig0025890:-11062 | Msa1425760:exon |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | tig0025890:-11019 | Msa1425760:CDS |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | tig0025890:+8557 | None:intergenic |
| AGTAGTAATCATGTTCATAT+TGG | 0.418531 | tig0025890:+11206 | None:intergenic |
| CAAGTTATATAATATCTGTT+TGG | 0.431157 | tig0025890:-8328 | Msa1425760:three_prime_UTR |
| AATGACACTGTTACAATACT+TGG | 0.434857 | tig0025890:-8373 | Msa1425760:three_prime_UTR |
| TTTCTTTCAAATTCAGTGTA+GGG | 0.440988 | tig0025890:+11136 | None:intergenic |
| GAAGCAAGCAAGAGACTCAT+TGG | 0.444861 | tig0025890:-11109 | Msa1425760:five_prime_UTR |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | tig0025890:+8586 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | tig0025890:+8539 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | tig0025890:-8512 | Msa1425760:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | tig0025890:-8636 | Msa1425760:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | tig0025890:-9676 | Msa1425760:intron |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | tig0025890:-9858 | Msa1425760:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | tig0025890:-9496 | Msa1425760:intron |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | tig0025890:+9867 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | tig0025890:+8632 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | tig0025890:-8536 | Msa1425760:CDS |
| TTCTTTCAAATTCAGTGTAG+GGG | 0.532949 | tig0025890:+11137 | None:intergenic |
| TGCCATCTCAAATTCTCACT+TGG | 0.533651 | tig0025890:+11073 | None:intergenic |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | tig0025890:-10952 | Msa1425760:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | tig0025890:+10943 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | tig0025890:-8625 | Msa1425760:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | tig0025890:-10951 | Msa1425760:CDS |
| AATGTGTCTGAAATTAATGT+AGG | 0.578011 | tig0025890:-11229 | Msa1425760:five_prime_UTR |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | tig0025890:-8495 | Msa1425760:exon |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | tig0025890:+10940 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | tig0025890:-11018 | Msa1425760:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | tig0025890:-8535 | Msa1425760:CDS |
| TTCCAAGTGAGAATTTGAGA+TGG | 0.619521 | tig0025890:-11075 | Msa1425760:exon |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | tig0025890:-8593 | Msa1425760:CDS |
| ACTATAATGCAACTTTGCAG+TGG | 0.646927 | tig0025890:-8438 | Msa1425760:three_prime_UTR |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | tig0025890:-10940 | Msa1425760:intron |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | tig0025890:-8622 | Msa1425760:CDS |
| ACAGGTCGAAGCATATAACA+AGG | 0.699921 | tig0025890:-9568 | Msa1425760:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | tig0025890:-11015 | Msa1425760:CDS |
| TGATATATACTTGAGCTGTG+AGG | 0.730347 | tig0025890:-11162 | Msa1425760:five_prime_UTR |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | tig0025890:+10964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAATAATGTATTT+CGG | + | tig0025890:9105-9124 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | - | tig0025890:9310-9329 | Msa1425760:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | - | tig0025890:9440-9459 | Msa1425760:intron | 10.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | - | tig0025890:8728-8747 | Msa1425760:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | - | tig0025890:8814-8833 | Msa1425760:intron | 15.0% |
| !! | TATTAAATCTAAATTTACTG+AGG | + | tig0025890:8939-8958 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | + | tig0025890:8984-9003 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | + | tig0025890:10076-10095 | None:intergenic | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | + | tig0025890:10077-10096 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | - | tig0025890:10203-10222 | Msa1425760:intron | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | + | tig0025890:10351-10370 | None:intergenic | 15.0% |
| !! | AGAAACTAAAAACAAAAGTT+TGG | + | tig0025890:8653-8672 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | + | tig0025890:8757-8776 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | + | tig0025890:8758-8777 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTCAGAACTG+AGG | - | tig0025890:8951-8970 | Msa1425760:intron | 20.0% |
| !! | AAAAGTTCTATAACACTATT+TGG | + | tig0025890:9347-9366 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | + | tig0025890:9836-9855 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAAAGATGAGA+AGG | + | tig0025890:10266-10285 | None:intergenic | 20.0% |
| !! | AATAGATATATAAAATGAGC+TGG | - | tig0025890:10459-10478 | Msa1425760:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | - | tig0025890:10530-10549 | Msa1425760:intron | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | - | tig0025890:10531-10550 | Msa1425760:intron | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | + | tig0025890:10550-10569 | None:intergenic | 20.0% |
| !!! | CTGTTACTTAGATATAATAT+GGG | + | tig0025890:10584-10603 | None:intergenic | 20.0% |
| !! | CAAGTTATATAATATCTGTT+TGG | - | tig0025890:11232-11251 | Msa1425760:five_prime_UTR | 20.0% |
| !! | AATGTGTCTGAAATTAATGT+AGG | - | tig0025890:8331-8350 | Msa1425760:three_prime_UTR | 25.0% |
| ! | AGTAGTAATCATGTTCATAT+TGG | + | tig0025890:8357-8376 | None:intergenic | 25.0% |
| ! | TTTCTTTCAAATTCAGTGTA+GGG | + | tig0025890:8427-8446 | None:intergenic | 25.0% |
| !! | TTTTCTTTCAAATTCAGTGT+AGG | + | tig0025890:8428-8447 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | - | tig0025890:8542-8561 | Msa1425760:CDS | 25.0% |
| !!! | TCCTATGTTTTTTACATTAG+TGG | - | tig0025890:9471-9490 | Msa1425760:intron | 25.0% |
| ! | ACCACTAATGTAAAAAACAT+AGG | + | tig0025890:9475-9494 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | - | tig0025890:9654-9673 | Msa1425760:intron | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | + | tig0025890:9696-9715 | None:intergenic | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | - | tig0025890:9843-9862 | Msa1425760:CDS | 25.0% |
| ! | GTAACTAGTAATAATGTAAC+AGG | - | tig0025890:9974-9993 | Msa1425760:intron | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | + | tig0025890:10138-10157 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | + | tig0025890:10139-10158 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | - | tig0025890:10180-10199 | Msa1425760:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | + | tig0025890:10185-10204 | None:intergenic | 25.0% |
| ! | ATAGTATGTCAGAAAAAAGA+TGG | + | tig0025890:10289-10308 | None:intergenic | 25.0% |
| !! | TATAGTTCTGTTTCAATGTT+TGG | + | tig0025890:10433-10452 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | + | tig0025890:10518-10537 | None:intergenic | 25.0% |
| !! | CCTGTTACTTAGATATAATA+TGG | + | tig0025890:10585-10604 | None:intergenic | 25.0% |
| ! | CCATATTATATCTAAGTAAC+AGG | - | tig0025890:10582-10601 | Msa1425760:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | + | tig0025890:10707-10726 | None:intergenic | 25.0% |
| ! | ACGTAATTTAGTGTAATCAT+AGG | - | tig0025890:10732-10751 | Msa1425760:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | + | tig0025890:10865-10884 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | - | tig0025890:10865-10884 | Msa1425760:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | - | tig0025890:10866-10885 | Msa1425760:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | - | tig0025890:11048-11067 | Msa1425760:CDS | 25.0% |
| TTCTTTCAAATTCAGTGTAG+GGG | + | tig0025890:8426-8445 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | - | tig0025890:8541-8560 | Msa1425760:CDS | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | - | tig0025890:8676-8695 | Msa1425760:intron | 30.0% | |
| ! | TGCACTTATAACCACTATTT+TGG | - | tig0025890:8770-8789 | Msa1425760:intron | 30.0% |
| ! | TACGAATGTTATAGGAGTAT+TGG | + | tig0025890:9061-9080 | None:intergenic | 30.0% |
| ACATGTCATACGAATGTTAT+AGG | + | tig0025890:9069-9088 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | - | tig0025890:9256-9275 | Msa1425760:intron | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | - | tig0025890:9257-9276 | Msa1425760:intron | 30.0% | |
| ! | GAGTAACTATTGTTCTTTTG+AGG | - | tig0025890:9653-9672 | Msa1425760:intron | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | - | tig0025890:9726-9745 | Msa1425760:intron | 30.0% |
| TTAAGCAATAACCATGTAGT+AGG | + | tig0025890:9764-9783 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | + | tig0025890:9951-9970 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | + | tig0025890:9952-9971 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | + | tig0025890:9953-9972 | None:intergenic | 30.0% | |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | - | tig0025890:10011-10030 | Msa1425760:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | - | tig0025890:10149-10168 | Msa1425760:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | + | tig0025890:10157-10176 | None:intergenic | 30.0% |
| CAATAAAGATGAGAAGGATA+AGG | + | tig0025890:10260-10279 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | + | tig0025890:10379-10398 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | - | tig0025890:10490-10509 | Msa1425760:intron | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | + | tig0025890:10629-10648 | None:intergenic | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | - | tig0025890:10628-10647 | Msa1425760:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | + | tig0025890:10632-10651 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | + | tig0025890:10643-10662 | None:intergenic | 30.0% | |
| !! | TTCTGAAATACTATGAAGCA+CGG | - | tig0025890:10660-10679 | Msa1425760:intron | 30.0% |
| ! | CTTCATATCTGGAATATGAT+AGG | - | tig0025890:10817-10836 | Msa1425760:intron | 30.0% |
| GAACAATCCCAATGAATATA+TGG | + | tig0025890:10876-10895 | None:intergenic | 30.0% | |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | - | tig0025890:10883-10902 | Msa1425760:intron | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | + | tig0025890:11006-11025 | None:intergenic | 30.0% |
| CTTGTTCAACCTTATCAAAT+TGG | + | tig0025890:11060-11079 | None:intergenic | 30.0% | |
| ATAAGGTTGAACAAGTCTAA+GGG | - | tig0025890:11065-11084 | Msa1425760:exon | 30.0% | |
| AATGACACTGTTACAATACT+TGG | - | tig0025890:11187-11206 | Msa1425760:five_prime_UTR | 30.0% | |
| TGATATATACTTGAGCTGTG+AGG | - | tig0025890:8398-8417 | Msa1425760:three_prime_UTR | 35.0% | |
| TTCCAAGTGAGAATTTGAGA+TGG | - | tig0025890:8485-8504 | Msa1425760:exon | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | - | tig0025890:8545-8564 | Msa1425760:CDS | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | + | tig0025890:8784-8803 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | - | tig0025890:9005-9024 | Msa1425760:intron | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | - | tig0025890:9125-9144 | Msa1425760:intron | 35.0% | |
| GTTATATATGTGTCGAACAC+CGG | + | tig0025890:9147-9166 | None:intergenic | 35.0% | |
| ! | ACTTTTGAATCTACTGTGTG+TGG | + | tig0025890:9226-9245 | None:intergenic | 35.0% |
| GCATAAGGAAAAGAGGATTA+AGG | + | tig0025890:9622-9641 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | - | tig0025890:9623-9642 | Msa1425760:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | - | tig0025890:9702-9721 | Msa1425760:intron | 35.0% |
| GAATAATAGCTCCTACTACA+TGG | - | tig0025890:9750-9769 | Msa1425760:intron | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | - | tig0025890:9884-9903 | Msa1425760:CDS | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | - | tig0025890:10032-10051 | Msa1425760:intron | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | - | tig0025890:10064-10083 | Msa1425760:intron | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | + | tig0025890:10328-10347 | None:intergenic | 35.0% | |
| AAAAATTTGCAGGTGCCTAA+TGG | + | tig0025890:10508-10527 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | - | tig0025890:10896-10915 | Msa1425760:intron | 35.0% |
| AATCAGTCCATCAAACTATG+TGG | - | tig0025890:10967-10986 | Msa1425760:CDS | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | + | tig0025890:11024-11043 | None:intergenic | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | - | tig0025890:11024-11043 | Msa1425760:CDS | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | - | tig0025890:11025-11044 | Msa1425760:CDS | 35.0% | |
| GATAAGGTTGAACAAGTCTA+AGG | - | tig0025890:11064-11083 | Msa1425760:exon | 35.0% | |
| ACTATAATGCAACTTTGCAG+TGG | - | tig0025890:11122-11141 | Msa1425760:five_prime_UTR | 35.0% | |
| TGCCATCTCAAATTCTCACT+TGG | + | tig0025890:8490-8509 | None:intergenic | 40.0% | |
| ! | TTTGAGATGGCATCATTTGC+AGG | - | tig0025890:8498-8517 | Msa1425760:CDS | 40.0% |
| TGTTGATCAACGAAGGGTTA+TGG | - | tig0025890:9263-9282 | Msa1425760:intron | 40.0% | |
| AAGTTGTCTCTTACGAAGCA+CGG | + | tig0025890:9544-9563 | None:intergenic | 40.0% | |
| !! | CTTTAAGATGACTGGCAGTT+TGG | - | tig0025890:9710-9729 | Msa1425760:intron | 40.0% |
| ACAGGTCGAAGCATATAACA+AGG | - | tig0025890:9992-10011 | Msa1425760:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | + | tig0025890:10804-10823 | None:intergenic | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | - | tig0025890:10806-10825 | Msa1425760:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | - | tig0025890:10924-10943 | Msa1425760:intron | 40.0% |
| TCATGTGCCACATAGTTTGA+TGG | + | tig0025890:10977-10996 | None:intergenic | 40.0% | |
| GAAGCAAGCAAGAGACTCAT+TGG | - | tig0025890:8451-8470 | Msa1425760:three_prime_UTR | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | - | tig0025890:8609-8628 | Msa1425760:CDS | 45.0% | |
| ! | GTCTAGAATTAGGTGTGTCG+CGG | - | tig0025890:9032-9051 | Msa1425760:intron | 45.0% |
| GCACCAAGCATAAGGAAAAG+AGG | + | tig0025890:9629-9648 | None:intergenic | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | + | tig0025890:10617-10636 | None:intergenic | 45.0% | |
| ATACTATGAAGCACGGTCAC+CGG | - | tig0025890:10667-10686 | Msa1425760:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | + | tig0025890:10931-10950 | None:intergenic | 45.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | + | tig0025890:8599-8618 | None:intergenic | 50.0% |
| CTTCAGATGCCACCATTGCA+AGG | - | tig0025890:8608-8627 | Msa1425760:CDS | 50.0% | |
| ! | GCACGGACACGTCTAGAATT+AGG | - | tig0025890:9022-9041 | Msa1425760:intron | 50.0% |
| ATTCGTGTCAGTGTCGTGTC+AGG | - | tig0025890:9503-9522 | Msa1425760:CDS | 50.0% | |
| ACTCAGCTGCACCAAGCATA+AGG | + | tig0025890:9637-9656 | None:intergenic | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | + | tig0025890:10798-10817 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | - | tig0025890:10935-10954 | Msa1425760:intron | 50.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | + | tig0025890:8620-8639 | None:intergenic | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | + | tig0025890:8623-8642 | None:intergenic | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | - | tig0025890:8620-8639 | Msa1425760:CDS | 55.0% |
| ACACGACACAGACACCGACA+CGG | - | tig0025890:10690-10709 | Msa1425760:intron | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | - | tig0025890:10938-10957 | Msa1425760:intron | 55.0% | |
| ! | GTCGGTGTCTGTGTCGTGTC+CGG | + | tig0025890:10689-10708 | None:intergenic | 60.0% |
| GGATTAGGCGTGTCCGGTGT+CGG | + | tig0025890:10783-10802 | None:intergenic | 60.0% | |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | + | tig0025890:10789-10808 | None:intergenic | 60.0% |
| CAGCGACGCGTATCCGACAC+CGG | - | tig0025890:10767-10786 | Msa1425760:intron | 65.0% | |
| CACCGGACACGCCTAATCCG+AGG | - | tig0025890:10784-10803 | Msa1425760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025890 | gene | 8319 | 11263 | 8319 | ID=Msa1425760;Name=Msa1425760 |
| tig0025890 | mRNA | 8319 | 11263 | 8319 | ID=Msa1425760-mRNA-1;Parent=Msa1425760;Name=Msa1425760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=185|1|1|1|1|1|5|179|181 |
| tig0025890 | exon | 8319 | 8677 | 8319 | ID=Msa1425760-mRNA-1:exon:4473;Parent=Msa1425760-mRNA-1 |
| tig0025890 | exon | 9497 | 9586 | 9497 | ID=Msa1425760-mRNA-1:exon:4472;Parent=Msa1425760-mRNA-1 |
| tig0025890 | exon | 9677 | 9717 | 9677 | ID=Msa1425760-mRNA-1:exon:4471;Parent=Msa1425760-mRNA-1 |
| tig0025890 | exon | 9835 | 9931 | 9835 | ID=Msa1425760-mRNA-1:exon:4470;Parent=Msa1425760-mRNA-1 |
| tig0025890 | exon | 10941 | 11263 | 10941 | ID=Msa1425760-mRNA-1:exon:4469;Parent=Msa1425760-mRNA-1 |
| tig0025890 | five_prime_UTR | 11079 | 11263 | 11079 | ID=Msa1425760-mRNA-1:five_prime_utr;Parent=Msa1425760-mRNA-1 |
| tig0025890 | CDS | 10941 | 11078 | 10941 | ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1 |
| tig0025890 | CDS | 9835 | 9931 | 9835 | ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1 |
| tig0025890 | CDS | 9677 | 9717 | 9677 | ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1 |
| tig0025890 | CDS | 9497 | 9586 | 9497 | ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1 |
| tig0025890 | CDS | 8498 | 8677 | 8498 | ID=Msa1425760-mRNA-1:cds;Parent=Msa1425760-mRNA-1 |
| tig0025890 | three_prime_UTR | 8319 | 8497 | 8319 | ID=Msa1425760-mRNA-1:three_prime_utr;Parent=Msa1425760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
