Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396720 | XP_003608956.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.65e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396720 | sp|Q94JX5|WLIM1_ARATH | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.51e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396720 | G7JNV0 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 7.90e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1396720 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1396720 | Msa1425760 | 0.995234 | 2.813916e-214 | -8.615850e-47 |
| Msa0615780 | Msa1396720 | 0.800861 | 1.181419e-48 | -8.615850e-47 |
| Msa0695140 | Msa1396720 | 0.800968 | 1.123323e-48 | -8.615850e-47 |
| Msa1259260 | Msa1396720 | 0.825379 | 4.839449e-54 | -8.615850e-47 |
| Msa1210150 | Msa1396720 | 0.991329 | 4.454728e-187 | -8.615850e-47 |
| Msa1210250 | Msa1396720 | 0.895601 | 8.208085e-76 | -8.615850e-47 |
| Msa1210850 | Msa1396720 | 0.960312 | 2.047379e-118 | -8.615850e-47 |
| Msa0570600 | Msa1396720 | 0.808731 | 2.681561e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396720 | MtrunA17_Chr4g0059371 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.52e-130 | 363 |
| Msa1396720 | MtrunA17_Chr1g0152431 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 2.70e-89 | 259 |
| Msa1396720 | MtrunA17_Chr3g0113051 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.11e-69 | 208 |
| Msa1396720 | MtrunA17_Chr8g0386501 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.17e-62 | 191 |
| Msa1396720 | MtrunA17_Chr8g0386501 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 5.81e-20 | 83.2 |
| Msa1396720 | MtrunA17_Chr8g0349391 | 50.279 | 179 | 76 | 2 | 3 | 177 | 2 | 171 | 5.76e-60 | 185 |
| Msa1396720 | MtrunA17_Chr7g0247111 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 4.86e-58 | 181 |
| Msa1396720 | MtrunA17_Chr7g0247111 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 1.71e-15 | 71.2 |
| Msa1396720 | MtrunA17_Chr7g0247111 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396720 | AT1G10200.1 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.53e-90 | 263 |
| Msa1396720 | AT3G55770.3 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1396720 | AT3G55770.5 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1396720 | AT3G55770.2 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1396720 | AT3G55770.1 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1396720 | AT2G39900.1 | 53.073 | 179 | 84 | 0 | 3 | 181 | 2 | 180 | 5.29e-69 | 208 |
| Msa1396720 | AT3G61230.1 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 8.14e-67 | 203 |
| Msa1396720 | AT3G61230.1 | 41.758 | 91 | 53 | 0 | 4 | 94 | 100 | 190 | 4.36e-18 | 78.6 |
| Msa1396720 | AT3G61230.1 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 6.22e-16 | 72.8 |
| Msa1396720 | AT1G01780.1 | 52.326 | 172 | 75 | 2 | 3 | 173 | 2 | 167 | 5.38e-63 | 193 |
| Msa1396720 | AT1G01780.1 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.80e-17 | 75.9 |
| Msa1396720 | AT2G45800.1 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 8.07e-63 | 194 |
| Msa1396720 | AT2G45800.1 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 8.68e-18 | 78.2 |
| Msa1396720 | AT2G45800.1 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.43e-16 | 74.7 |
| Msa1396720 | AT3G55770.7 | 47.196 | 214 | 76 | 3 | 3 | 181 | 2 | 213 | 1.08e-62 | 194 |
| Msa1396720 | AT1G10200.2 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.45e-62 | 190 |
| Msa1396720 | AT1G10200.2 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.86e-16 | 72.4 |
| Msa1396720 | AT3G55770.4 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.84e-43 | 141 |
| Msa1396720 | AT3G55770.4 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.32e-18 | 77.0 |
| Msa1396720 | AT2G45800.2 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.42e-42 | 141 |
| Msa1396720 | AT2G45800.2 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.25e-18 | 78.6 |
| Msa1396720 | AT3G55770.6 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.91e-40 | 134 |
| Msa1396720 | AT3G55770.6 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.03e-18 | 77.4 |
Find 41 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | tig0022059:-88857 | Msa1396720:exon |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | tig0022059:+88864 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | tig0022059:-90213 | Msa1396720:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | tig0022059:-91427 | Msa1396720:exon |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | tig0022059:-91384 | Msa1396720:CDS |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | tig0022059:+88918 | None:intergenic |
| AGTAGTAATCATGTTCATAT+TGG | 0.418531 | tig0022059:+91571 | None:intergenic |
| CAAGTTATATAATATCTGTT+TGG | 0.431157 | tig0022059:-88689 | Msa1396720:three_prime_UTR |
| AATGACACTGTTACAATACT+TGG | 0.434857 | tig0022059:-88734 | Msa1396720:three_prime_UTR |
| TTTCTTTCAAATTCAGTGTA+GGG | 0.440988 | tig0022059:+91501 | None:intergenic |
| GAAGCAAGCAAGAGACTCAT+TGG | 0.444861 | tig0022059:-91474 | Msa1396720:five_prime_UTR |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | tig0022059:+88947 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | tig0022059:+88900 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | tig0022059:-88873 | Msa1396720:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | tig0022059:-88997 | Msa1396720:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | tig0022059:-90038 | Msa1396720:intron |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | tig0022059:-90221 | Msa1396720:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | tig0022059:-89858 | Msa1396720:intron |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | tig0022059:+90230 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | tig0022059:+88993 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | tig0022059:-88897 | Msa1396720:CDS |
| TTCTTTCAAATTCAGTGTAG+GGG | 0.532949 | tig0022059:+91502 | None:intergenic |
| TGCCATCTCAAATTCTCACT+TGG | 0.533651 | tig0022059:+91438 | None:intergenic |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | tig0022059:-91317 | Msa1396720:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | tig0022059:+91308 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | tig0022059:-88986 | Msa1396720:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | tig0022059:-91316 | Msa1396720:CDS |
| AATGTGTCTGAAATTAATGT+AGG | 0.578011 | tig0022059:-91594 | Msa1396720:five_prime_UTR |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | tig0022059:-88856 | Msa1396720:exon |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | tig0022059:+91305 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | tig0022059:-91383 | Msa1396720:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | tig0022059:-88896 | Msa1396720:CDS |
| TTCCAAGTGAGAATTTGAGA+TGG | 0.619521 | tig0022059:-91440 | Msa1396720:exon |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | tig0022059:-88954 | Msa1396720:CDS |
| ACTATAATGCAACTTTGCAG+TGG | 0.646927 | tig0022059:-88799 | Msa1396720:three_prime_UTR |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | tig0022059:-91305 | Msa1396720:intron |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | tig0022059:-88983 | Msa1396720:CDS |
| ACAGGTCGAAGCATATAACA+AGG | 0.699921 | tig0022059:-89930 | Msa1396720:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | tig0022059:-91380 | Msa1396720:CDS |
| TGATATATACTTGAGCTGTG+AGG | 0.730347 | tig0022059:-91527 | Msa1396720:five_prime_UTR |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | tig0022059:+91329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAATAATGTATTT+CGG | + | tig0022059:89467-89486 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | - | tig0022059:89673-89692 | Msa1396720:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | - | tig0022059:89803-89822 | Msa1396720:intron | 10.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | - | tig0022059:89090-89109 | Msa1396720:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | - | tig0022059:89176-89195 | Msa1396720:intron | 15.0% |
| !! | TATTAAATCTAAATTTACTG+AGG | + | tig0022059:89301-89320 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | + | tig0022059:89346-89365 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | + | tig0022059:90440-90459 | None:intergenic | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | + | tig0022059:90441-90460 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | - | tig0022059:90567-90586 | Msa1396720:intron | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | + | tig0022059:90716-90735 | None:intergenic | 15.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | + | tig0022059:89014-89033 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | + | tig0022059:89119-89138 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | + | tig0022059:89120-89139 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTCAGAACTG+AGG | - | tig0022059:89313-89332 | Msa1396720:intron | 20.0% |
| !! | AAAAGTTCTATAACACTATT+TGG | + | tig0022059:89710-89729 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | + | tig0022059:90200-90219 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAAAGATGAGA+AGG | + | tig0022059:90630-90649 | None:intergenic | 20.0% |
| !! | AATAGATATATAAAATGAGC+TGG | - | tig0022059:90824-90843 | Msa1396720:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | - | tig0022059:90895-90914 | Msa1396720:intron | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | - | tig0022059:90896-90915 | Msa1396720:intron | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | + | tig0022059:90915-90934 | None:intergenic | 20.0% |
| !!! | CTGTTACTTAGATATAATAT+GGG | + | tig0022059:90949-90968 | None:intergenic | 20.0% |
| !! | CAAGTTATATAATATCTGTT+TGG | - | tig0022059:91597-91616 | Msa1396720:five_prime_UTR | 20.0% |
| !! | AATGTGTCTGAAATTAATGT+AGG | - | tig0022059:88692-88711 | Msa1396720:three_prime_UTR | 25.0% |
| ! | AGTAGTAATCATGTTCATAT+TGG | + | tig0022059:88718-88737 | None:intergenic | 25.0% |
| ! | TTTCTTTCAAATTCAGTGTA+GGG | + | tig0022059:88788-88807 | None:intergenic | 25.0% |
| !! | TTTTCTTTCAAATTCAGTGT+AGG | + | tig0022059:88789-88808 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | - | tig0022059:88903-88922 | Msa1396720:CDS | 25.0% |
| !!! | TCCTATGTTTTTTACATTAG+TGG | - | tig0022059:89834-89853 | Msa1396720:intron | 25.0% |
| ! | ACCACTAATGTAAAAAACAT+AGG | + | tig0022059:89838-89857 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | - | tig0022059:90017-90036 | Msa1396720:intron | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | + | tig0022059:90059-90078 | None:intergenic | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | - | tig0022059:90207-90226 | Msa1396720:CDS | 25.0% |
| ! | GTAACTAGTAATAATGTAAC+AGG | - | tig0022059:90338-90357 | Msa1396720:intron | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | + | tig0022059:90502-90521 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | + | tig0022059:90503-90522 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | - | tig0022059:90544-90563 | Msa1396720:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | + | tig0022059:90549-90568 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | + | tig0022059:90653-90672 | None:intergenic | 25.0% |
| !! | TATAGTTCTGTTTCAATGTT+TGG | + | tig0022059:90798-90817 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | + | tig0022059:90883-90902 | None:intergenic | 25.0% |
| !! | CCTGTTACTTAGATATAATA+TGG | + | tig0022059:90950-90969 | None:intergenic | 25.0% |
| ! | CCATATTATATCTAAGTAAC+AGG | - | tig0022059:90947-90966 | Msa1396720:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | + | tig0022059:91072-91091 | None:intergenic | 25.0% |
| ! | ACGTAATTTAGTGTAATCAT+AGG | - | tig0022059:91097-91116 | Msa1396720:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | + | tig0022059:91230-91249 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | - | tig0022059:91230-91249 | Msa1396720:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | - | tig0022059:91231-91250 | Msa1396720:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | - | tig0022059:91413-91432 | Msa1396720:CDS | 25.0% |
| TTCTTTCAAATTCAGTGTAG+GGG | + | tig0022059:88787-88806 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | - | tig0022059:88902-88921 | Msa1396720:CDS | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | - | tig0022059:89038-89057 | Msa1396720:intron | 30.0% | |
| ! | TGCACTTATAACCACTATTT+TGG | - | tig0022059:89132-89151 | Msa1396720:intron | 30.0% |
| ! | TACGAATGTTATAGGAGTAT+TGG | + | tig0022059:89423-89442 | None:intergenic | 30.0% |
| ACATGTCATACGAATGTTAT+AGG | + | tig0022059:89431-89450 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | - | tig0022059:89619-89638 | Msa1396720:intron | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | - | tig0022059:89620-89639 | Msa1396720:intron | 30.0% | |
| ! | GAGTAACTATTGTTCTTTTG+AGG | - | tig0022059:90016-90035 | Msa1396720:intron | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | - | tig0022059:90089-90108 | Msa1396720:intron | 30.0% |
| TTAAGCAATAACCATGTAGT+AGG | + | tig0022059:90127-90146 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | + | tig0022059:90315-90334 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | + | tig0022059:90316-90335 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | + | tig0022059:90317-90336 | None:intergenic | 30.0% | |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | - | tig0022059:90375-90394 | Msa1396720:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | - | tig0022059:90513-90532 | Msa1396720:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | + | tig0022059:90521-90540 | None:intergenic | 30.0% |
| CAATAAAGATGAGAAGGATA+AGG | + | tig0022059:90624-90643 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | + | tig0022059:90744-90763 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | - | tig0022059:90855-90874 | Msa1396720:intron | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | + | tig0022059:90994-91013 | None:intergenic | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | - | tig0022059:90993-91012 | Msa1396720:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | + | tig0022059:90997-91016 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | + | tig0022059:91008-91027 | None:intergenic | 30.0% | |
| !! | TTCTGAAATACTATGAAGCA+CGG | - | tig0022059:91025-91044 | Msa1396720:intron | 30.0% |
| ! | CTTCATATCTGGAATATGAT+AGG | - | tig0022059:91182-91201 | Msa1396720:intron | 30.0% |
| GAACAATCCCAATGAATATA+TGG | + | tig0022059:91241-91260 | None:intergenic | 30.0% | |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | - | tig0022059:91248-91267 | Msa1396720:intron | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | + | tig0022059:91371-91390 | None:intergenic | 30.0% |
| CTTGTTCAACCTTATCAAAT+TGG | + | tig0022059:91425-91444 | None:intergenic | 30.0% | |
| ATAAGGTTGAACAAGTCTAA+GGG | - | tig0022059:91430-91449 | Msa1396720:exon | 30.0% | |
| AATGACACTGTTACAATACT+TGG | - | tig0022059:91552-91571 | Msa1396720:five_prime_UTR | 30.0% | |
| TGATATATACTTGAGCTGTG+AGG | - | tig0022059:88759-88778 | Msa1396720:three_prime_UTR | 35.0% | |
| TTCCAAGTGAGAATTTGAGA+TGG | - | tig0022059:88846-88865 | Msa1396720:exon | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | - | tig0022059:88906-88925 | Msa1396720:CDS | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | + | tig0022059:89146-89165 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | - | tig0022059:89367-89386 | Msa1396720:intron | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | - | tig0022059:89488-89507 | Msa1396720:intron | 35.0% | |
| GTTATATATGTGTCGAACAC+CGG | + | tig0022059:89510-89529 | None:intergenic | 35.0% | |
| ! | ACTTTTGAATCTACTGTGTG+TGG | + | tig0022059:89589-89608 | None:intergenic | 35.0% |
| GCATAAGGAAAAGAGGATTA+AGG | + | tig0022059:89985-90004 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | - | tig0022059:89986-90005 | Msa1396720:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | - | tig0022059:90065-90084 | Msa1396720:intron | 35.0% |
| GAATAATAGCTCCTACTACA+TGG | - | tig0022059:90113-90132 | Msa1396720:intron | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | - | tig0022059:90248-90267 | Msa1396720:CDS | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | - | tig0022059:90396-90415 | Msa1396720:intron | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | - | tig0022059:90428-90447 | Msa1396720:intron | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | + | tig0022059:90693-90712 | None:intergenic | 35.0% | |
| AAAAATTTGCAGGTGCCTAA+TGG | + | tig0022059:90873-90892 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | - | tig0022059:91261-91280 | Msa1396720:intron | 35.0% |
| AATCAGTCCATCAAACTATG+TGG | - | tig0022059:91332-91351 | Msa1396720:CDS | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | + | tig0022059:91389-91408 | None:intergenic | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | - | tig0022059:91389-91408 | Msa1396720:CDS | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | - | tig0022059:91390-91409 | Msa1396720:CDS | 35.0% | |
| GATAAGGTTGAACAAGTCTA+AGG | - | tig0022059:91429-91448 | Msa1396720:exon | 35.0% | |
| ACTATAATGCAACTTTGCAG+TGG | - | tig0022059:91487-91506 | Msa1396720:five_prime_UTR | 35.0% | |
| TGCCATCTCAAATTCTCACT+TGG | + | tig0022059:88851-88870 | None:intergenic | 40.0% | |
| ! | TTTGAGATGGCATCATTTGC+AGG | - | tig0022059:88859-88878 | Msa1396720:CDS | 40.0% |
| TGTTGATCAACGAAGGGTTA+TGG | - | tig0022059:89626-89645 | Msa1396720:intron | 40.0% | |
| AAGTTGTCTCTTACGAAGCA+CGG | + | tig0022059:89907-89926 | None:intergenic | 40.0% | |
| !! | CTTTAAGATGACTGGCAGTT+TGG | - | tig0022059:90073-90092 | Msa1396720:intron | 40.0% |
| ACAGGTCGAAGCATATAACA+AGG | - | tig0022059:90356-90375 | Msa1396720:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | + | tig0022059:91169-91188 | None:intergenic | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | - | tig0022059:91171-91190 | Msa1396720:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | - | tig0022059:91289-91308 | Msa1396720:intron | 40.0% |
| TCATGTGCCACATAGTTTGA+TGG | + | tig0022059:91342-91361 | None:intergenic | 40.0% | |
| GAAGCAAGCAAGAGACTCAT+TGG | - | tig0022059:88812-88831 | Msa1396720:three_prime_UTR | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | - | tig0022059:88970-88989 | Msa1396720:CDS | 45.0% | |
| ! | GTCTAGAATTAGGTGTGTCG+CGG | - | tig0022059:89394-89413 | Msa1396720:intron | 45.0% |
| GCACCAAGCATAAGGAAAAG+AGG | + | tig0022059:89992-90011 | None:intergenic | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | + | tig0022059:90982-91001 | None:intergenic | 45.0% | |
| ATACTATGAAGCACGGTCAC+CGG | - | tig0022059:91032-91051 | Msa1396720:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | + | tig0022059:91296-91315 | None:intergenic | 45.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | + | tig0022059:88960-88979 | None:intergenic | 50.0% |
| CTTCAGATGCCACCATTGCA+AGG | - | tig0022059:88969-88988 | Msa1396720:CDS | 50.0% | |
| ! | GCACGGACACGTCTAGAATT+AGG | - | tig0022059:89384-89403 | Msa1396720:intron | 50.0% |
| ATTCGTGTCAGTGTCGTGTC+AGG | - | tig0022059:89866-89885 | Msa1396720:CDS | 50.0% | |
| ACTCAGCTGCACCAAGCATA+AGG | + | tig0022059:90000-90019 | None:intergenic | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | + | tig0022059:91163-91182 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | - | tig0022059:91300-91319 | Msa1396720:intron | 50.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | + | tig0022059:88981-89000 | None:intergenic | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | + | tig0022059:88984-89003 | None:intergenic | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | - | tig0022059:88981-89000 | Msa1396720:CDS | 55.0% |
| ACACGACACAGACACCGACA+CGG | - | tig0022059:91055-91074 | Msa1396720:intron | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | - | tig0022059:91303-91322 | Msa1396720:intron | 55.0% | |
| ! | GTCGGTGTCTGTGTCGTGTC+CGG | + | tig0022059:91054-91073 | None:intergenic | 60.0% |
| GGATTAGGCGTGTCCGGTGT+CGG | + | tig0022059:91148-91167 | None:intergenic | 60.0% | |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | + | tig0022059:91154-91173 | None:intergenic | 60.0% |
| CAGCGACGCGTATCCGACAC+CGG | - | tig0022059:91132-91151 | Msa1396720:intron | 65.0% | |
| CACCGGACACGCCTAATCCG+AGG | - | tig0022059:91149-91168 | Msa1396720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022059 | gene | 88680 | 91628 | 88680 | ID=Msa1396720;Name=Msa1396720 |
| tig0022059 | mRNA | 88680 | 91628 | 88680 | ID=Msa1396720-mRNA-1;Parent=Msa1396720;Name=Msa1396720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185|1|1|1|1|1|5|179|181 |
| tig0022059 | exon | 88680 | 89038 | 88680 | ID=Msa1396720-mRNA-1:exon:15644;Parent=Msa1396720-mRNA-1 |
| tig0022059 | exon | 89859 | 89948 | 89859 | ID=Msa1396720-mRNA-1:exon:15643;Parent=Msa1396720-mRNA-1 |
| tig0022059 | exon | 90039 | 90079 | 90039 | ID=Msa1396720-mRNA-1:exon:15642;Parent=Msa1396720-mRNA-1 |
| tig0022059 | exon | 90198 | 90294 | 90198 | ID=Msa1396720-mRNA-1:exon:15641;Parent=Msa1396720-mRNA-1 |
| tig0022059 | exon | 91306 | 91628 | 91306 | ID=Msa1396720-mRNA-1:exon:15640;Parent=Msa1396720-mRNA-1 |
| tig0022059 | five_prime_UTR | 91444 | 91628 | 91444 | ID=Msa1396720-mRNA-1:five_prime_utr;Parent=Msa1396720-mRNA-1 |
| tig0022059 | CDS | 91306 | 91443 | 91306 | ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1 |
| tig0022059 | CDS | 90198 | 90294 | 90198 | ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1 |
| tig0022059 | CDS | 90039 | 90079 | 90039 | ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1 |
| tig0022059 | CDS | 89859 | 89948 | 89859 | ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1 |
| tig0022059 | CDS | 88859 | 89038 | 88859 | ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1 |
| tig0022059 | three_prime_UTR | 88680 | 88858 | 88680 | ID=Msa1396720-mRNA-1:three_prime_utr;Parent=Msa1396720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
