AlfalfaGEDB | Msa1396720

M. sativa cultivar zhongmu-4 / Msa1396720

KEGG: K09377
GO: -
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396720	XP_003608956.1	95.580	181	8	0	1	181	1	181	1.65e-126	363

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396720	sp\|Q94JX5\|WLIM1_ARATH	69.143	175	53	1	3	176	2	176	1.51e-89	263

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396720	G7JNV0	95.580	181	8	0	1	181	1	181	7.90e-127	363

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TFs/TRs:

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Gene ID	Type	Classification
Msa1396720	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0570600	Msa1396720	0.808731	2.681561e-50	-8.615850e-47
Msa0615780	Msa1396720	0.800861	1.181419e-48	-8.615850e-47
Msa0695140	Msa1396720	0.800968	1.123323e-48	-8.615850e-47
Msa1210150	Msa1396720	0.991329	4.454728e-187	-8.615850e-47
Msa1210250	Msa1396720	0.895601	8.208085e-76	-8.615850e-47
Msa1210850	Msa1396720	0.960312	2.047379e-118	-8.615850e-47
Msa1259260	Msa1396720	0.825379	4.839449e-54	-8.615850e-47
Msa1396720	Msa1425760	0.995234	2.813916e-214	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396720	MtrunA17_Chr4g0059371	95.580	181	8	0	1	181	1	181	1.52e-130	363
Msa1396720	MtrunA17_Chr1g0152431	67.429	175	56	1	3	176	2	176	2.70e-89	259
Msa1396720	MtrunA17_Chr3g0113051	54.945	182	77	3	3	181	2	181	5.11e-69	208
Msa1396720	MtrunA17_Chr8g0386501	50.838	179	81	2	3	181	2	173	6.17e-62	191
Msa1396720	MtrunA17_Chr8g0386501	53.521	71	33	0	2	72	93	163	5.81e-20	83.2
Msa1396720	MtrunA17_Chr8g0349391	50.279	179	76	2	3	177	2	171	5.76e-60	185
Msa1396720	MtrunA17_Chr7g0247111	49.133	173	81	2	3	173	2	169	4.86e-58	181
Msa1396720	MtrunA17_Chr7g0247111	43.038	79	45	0	4	82	99	177	1.71e-15	71.2
Msa1396720	MtrunA17_Chr7g0247111	43.056	72	41	0	103	174	3	74	3.38e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1396720	AT1G10200.1	69.143	175	53	1	3	176	2	176	1.53e-90	263
Msa1396720	AT3G55770.3	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1396720	AT3G55770.5	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1396720	AT3G55770.2	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1396720	AT3G55770.1	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1396720	AT2G39900.1	53.073	179	84	0	3	181	2	180	5.29e-69	208
Msa1396720	AT3G61230.1	53.179	173	78	1	1	173	1	170	8.14e-67	203
Msa1396720	AT3G61230.1	41.758	91	53	0	4	94	100	190	4.36e-18	78.6
Msa1396720	AT3G61230.1	44.444	72	40	0	103	174	4	75	6.22e-16	72.8
Msa1396720	AT1G01780.1	52.326	172	75	2	3	173	2	167	5.38e-63	193

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Find 41 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGTACCCAATTGAAA+AGG	0.511293	tig0022059:-89858	Msa1396720:intron
AATCAGTCCATCAAACTATG+TGG	0.634185	tig0022059:-88954	Msa1396720:CDS
AATGACACTGTTACAATACT+TGG	0.434857	tig0022059:-88734	Msa1396720:three_prime_UTR
AATGTGTCTGAAATTAATGT+AGG	0.578011	tig0022059:-91594	Msa1396720:five_prime_UTR
ACAGGTCGAAGCATATAACA+AGG	0.699921	tig0022059:-89930	Msa1396720:intron
ACTATAATGCAACTTTGCAG+TGG	0.646927	tig0022059:-88799	Msa1396720:three_prime_UTR
ACTCAGATCTTCAAACAGAA+GGG	0.607367	tig0022059:-88896	Msa1396720:CDS
ACTTGCTTCAGGTGCACACA+TGG	0.555007	tig0022059:-88986	Msa1396720:CDS
AGTAGTAATCATGTTCATAT+TGG	0.418531	tig0022059:+91571	None:intergenic
AGTTGAAAGATCAACTGATC+AGG	0.484362	tig0022059:-90038	Msa1396720:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTTCAAATTCAGTGTAG+GGG	+	tig0022059:88787-88806	None:intergenic	30.0%
CATGTGAAAAGAAAGTTTAC+TGG	-	tig0022059:88902-88921	Msa1396720:CDS	30.0%
TTTCGATGAATGCTTCAATA+AGG	-	tig0022059:89038-89057	Msa1396720:intron	30.0%
ACATGTCATACGAATGTTAT+AGG	+	tig0022059:89431-89450	None:intergenic	30.0%
TTAGAAATGTTGATCAACGA+AGG	-	tig0022059:89619-89638	Msa1396720:intron	30.0%
TAGAAATGTTGATCAACGAA+GGG	-	tig0022059:89620-89639	Msa1396720:intron	30.0%
TTAAGCAATAACCATGTAGT+AGG	+	tig0022059:90127-90146	None:intergenic	30.0%
AGACAATTTACTTTATGCAG+GGG	+	tig0022059:90315-90334	None:intergenic	30.0%
GAGACAATTTACTTTATGCA+GGG	+	tig0022059:90316-90335	None:intergenic	30.0%
AGAGACAATTTACTTTATGC+AGG	+	tig0022059:90317-90336	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022059	gene	88680	91628	88680	ID=Msa1396720;Name=Msa1396720
tig0022059	mRNA	88680	91628	88680	ID=Msa1396720-mRNA-1;Parent=Msa1396720;Name=Msa1396720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185\|1\|1\|1\|1\|1\|5\|179\|181
tig0022059	exon	88680	89038	88680	ID=Msa1396720-mRNA-1:exon:15644;Parent=Msa1396720-mRNA-1
tig0022059	exon	89859	89948	89859	ID=Msa1396720-mRNA-1:exon:15643;Parent=Msa1396720-mRNA-1
tig0022059	exon	90039	90079	90039	ID=Msa1396720-mRNA-1:exon:15642;Parent=Msa1396720-mRNA-1
tig0022059	exon	90198	90294	90198	ID=Msa1396720-mRNA-1:exon:15641;Parent=Msa1396720-mRNA-1
tig0022059	exon	91306	91628	91306	ID=Msa1396720-mRNA-1:exon:15640;Parent=Msa1396720-mRNA-1
tig0022059	five_prime_UTR	91444	91628	91444	ID=Msa1396720-mRNA-1:five_prime_utr;Parent=Msa1396720-mRNA-1
tig0022059	CDS	91306	91443	91306	ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1
tig0022059	CDS	90198	90294	90198	ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1
tig0022059	CDS	90039	90079	90039	ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1
tig0022059	CDS	89859	89948	89859	ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1
tig0022059	CDS	88859	89038	88859	ID=Msa1396720-mRNA-1:cds;Parent=Msa1396720-mRNA-1
tig0022059	three_prime_UTR	88680	88858	88680	ID=Msa1396720-mRNA-1:three_prime_utr;Parent=Msa1396720-mRNA-1

Gene Sequence

>Msa1396720

ATGGCATCATTTGCAGGCACTACACAGAAATGTAATACATGTGAAAAGAAAGTTTACTGGGTGGAACAGCTCACTGCTGATAACAAAGTGTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACACTCAAGCTGAGTAACTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGTTGAAAGATCAACTGATCAGGTCGAAGCATATAACAAGGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGAATCTTACCATAAGACTTGCTTCAGGTGCACACATGGAGGTTGCATAATCAGTCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGACATCACCATACTCAGATCTTCAAACAGAAGGGTAATTTCAGCCAATTTGATAAGGTTGAACAAGTCTAA

Protein sequence

>Msa1396720

MASFAGTTQKCNTCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYRVERSTDQVEAYNKVSRFFAGTQEKCVGCKKTVYPIEKVAVDGESYHKTCFRCTHGGCIISPSNYVAHEHRLYCRHHHTQIFKQKGNFSQFDKVEQV*