Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210150 | sp|Q94JX5|WLIM1_ARATH | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.51e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210150 | G7JNV0 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 7.90e-127 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1210150 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615780 | Msa1210150 | 0.803668 | 3.123438e-49 | -8.615850e-47 |
| Msa0695140 | Msa1210150 | 0.804282 | 2.327711e-49 | -8.615850e-47 |
| Msa1210150 | Msa1210250 | 0.894695 | 1.936488e-75 | -8.615850e-47 |
| Msa1210150 | Msa1210850 | 0.968963 | 1.981016e-129 | -8.615850e-47 |
| Msa1210150 | Msa1259260 | 0.825574 | 4.352722e-54 | -8.615850e-47 |
| Msa1210150 | Msa1396720 | 0.991329 | 4.454728e-187 | -8.615850e-47 |
| Msa1210150 | Msa1425760 | 0.993853 | 1.043765e-202 | -8.615850e-47 |
| Msa0570600 | Msa1210150 | 0.811881 | 5.609035e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210150 | MtrunA17_Chr4g0059371 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.52e-130 | 363 |
| Msa1210150 | MtrunA17_Chr1g0152431 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 2.70e-89 | 259 |
| Msa1210150 | MtrunA17_Chr3g0113051 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 5.11e-69 | 208 |
| Msa1210150 | MtrunA17_Chr8g0386501 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 6.17e-62 | 191 |
| Msa1210150 | MtrunA17_Chr8g0386501 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 5.81e-20 | 83.2 |
| Msa1210150 | MtrunA17_Chr8g0349391 | 50.279 | 179 | 76 | 2 | 3 | 177 | 2 | 171 | 5.76e-60 | 185 |
| Msa1210150 | MtrunA17_Chr7g0247111 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 4.86e-58 | 181 |
| Msa1210150 | MtrunA17_Chr7g0247111 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 1.71e-15 | 71.2 |
| Msa1210150 | MtrunA17_Chr7g0247111 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 3.38e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210150 | AT1G10200.1 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.53e-90 | 263 |
| Msa1210150 | AT3G55770.3 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210150 | AT3G55770.5 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210150 | AT3G55770.2 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210150 | AT3G55770.1 | 56.111 | 180 | 76 | 2 | 3 | 181 | 2 | 179 | 2.45e-70 | 212 |
| Msa1210150 | AT2G39900.1 | 53.073 | 179 | 84 | 0 | 3 | 181 | 2 | 180 | 5.29e-69 | 208 |
| Msa1210150 | AT3G61230.1 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 8.14e-67 | 203 |
| Msa1210150 | AT3G61230.1 | 41.758 | 91 | 53 | 0 | 4 | 94 | 100 | 190 | 4.36e-18 | 78.6 |
| Msa1210150 | AT3G61230.1 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 6.22e-16 | 72.8 |
| Msa1210150 | AT1G01780.1 | 52.326 | 172 | 75 | 2 | 3 | 173 | 2 | 167 | 5.38e-63 | 193 |
| Msa1210150 | AT1G01780.1 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.80e-17 | 75.9 |
| Msa1210150 | AT2G45800.1 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 8.07e-63 | 194 |
| Msa1210150 | AT2G45800.1 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 8.68e-18 | 78.2 |
| Msa1210150 | AT2G45800.1 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.43e-16 | 74.7 |
| Msa1210150 | AT3G55770.7 | 47.196 | 214 | 76 | 3 | 3 | 181 | 2 | 213 | 1.08e-62 | 194 |
| Msa1210150 | AT1G10200.2 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.45e-62 | 190 |
| Msa1210150 | AT1G10200.2 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.86e-16 | 72.4 |
| Msa1210150 | AT3G55770.4 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.84e-43 | 141 |
| Msa1210150 | AT3G55770.4 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 3.32e-18 | 77.0 |
| Msa1210150 | AT2G45800.2 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.42e-42 | 141 |
| Msa1210150 | AT2G45800.2 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.25e-18 | 78.6 |
| Msa1210150 | AT3G55770.6 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.91e-40 | 134 |
| Msa1210150 | AT3G55770.6 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.03e-18 | 77.4 |
Find 41 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8_1:-68893421 | Msa1210150:exon |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8_1:+68893428 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8_1:-68894777 | Msa1210150:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8_1:-68895989 | Msa1210150:exon |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8_1:-68895946 | Msa1210150:CDS |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | 8_1:+68893482 | None:intergenic |
| AGTAGTAATCATGTTCATAT+TGG | 0.418531 | 8_1:+68896133 | None:intergenic |
| CAAGTTATATAATATCTGTT+TGG | 0.431157 | 8_1:-68893253 | Msa1210150:three_prime_UTR |
| AATGACACTGTTACAATACT+TGG | 0.434857 | 8_1:-68893298 | Msa1210150:three_prime_UTR |
| TTTCTTTCAAATTCAGTGTA+GGG | 0.440988 | 8_1:+68896063 | None:intergenic |
| GAAGCAAGCAAGAGACTCAT+TGG | 0.444861 | 8_1:-68896036 | Msa1210150:five_prime_UTR |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8_1:+68893511 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | 8_1:+68893464 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8_1:-68893437 | Msa1210150:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8_1:-68893561 | Msa1210150:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8_1:-68894602 | Msa1210150:intron |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8_1:-68894785 | Msa1210150:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8_1:-68894422 | Msa1210150:intron |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8_1:+68894794 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8_1:+68893557 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | 8_1:-68893461 | Msa1210150:CDS |
| TTCTTTCAAATTCAGTGTAG+GGG | 0.532949 | 8_1:+68896064 | None:intergenic |
| TGCCATCTCAAATTCTCACT+TGG | 0.533651 | 8_1:+68896000 | None:intergenic |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8_1:-68895879 | Msa1210150:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8_1:+68895870 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8_1:-68893550 | Msa1210150:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8_1:-68895878 | Msa1210150:CDS |
| AATGTGTCTGAAATTAATGT+AGG | 0.578011 | 8_1:-68896156 | Msa1210150:five_prime_UTR |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8_1:-68893420 | Msa1210150:exon |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8_1:+68895867 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8_1:-68895945 | Msa1210150:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | 8_1:-68893460 | Msa1210150:CDS |
| TTCCAAGTGAGAATTTGAGA+TGG | 0.619521 | 8_1:-68896002 | Msa1210150:exon |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8_1:-68893518 | Msa1210150:CDS |
| ACTATAATGCAACTTTGCAG+TGG | 0.646927 | 8_1:-68893363 | Msa1210150:three_prime_UTR |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8_1:-68895867 | Msa1210150:intron |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8_1:-68893547 | Msa1210150:CDS |
| ACAGGTCGAAGCATATAACA+AGG | 0.699921 | 8_1:-68894494 | Msa1210150:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8_1:-68895942 | Msa1210150:CDS |
| TGATATATACTTGAGCTGTG+AGG | 0.730347 | 8_1:-68896089 | Msa1210150:five_prime_UTR |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8_1:+68895891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTCAATTGTAAA+TGG | - | chr8_1:68894236-68894255 | Msa1210150:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | - | chr8_1:68894365-68894384 | Msa1210150:intron | 10.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | - | chr8_1:68893654-68893673 | Msa1210150:intron | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | - | chr8_1:68893740-68893759 | Msa1210150:intron | 15.0% |
| !! | TATTAAATCTAAATTTACTG+AGG | + | chr8_1:68893865-68893884 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | + | chr8_1:68893910-68893929 | None:intergenic | 15.0% |
| !!! | ATATATATACCTTTTCAATT+GGG | + | chr8_1:68895002-68895021 | None:intergenic | 15.0% |
| !!! | AATATATATACCTTTTCAAT+TGG | + | chr8_1:68895003-68895022 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | - | chr8_1:68895129-68895148 | Msa1210150:intron | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | + | chr8_1:68895278-68895297 | None:intergenic | 15.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | + | chr8_1:68893578-68893597 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | + | chr8_1:68893683-68893702 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | + | chr8_1:68893684-68893703 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTCAGAACTG+AGG | - | chr8_1:68893877-68893896 | Msa1210150:intron | 20.0% |
| !! | AAAAGTTCTATAACACTATT+TGG | + | chr8_1:68894273-68894292 | None:intergenic | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | + | chr8_1:68894762-68894781 | None:intergenic | 20.0% |
| !!! | TTTTAACAATAAAGATGAGA+AGG | + | chr8_1:68895192-68895211 | None:intergenic | 20.0% |
| !! | AATAGATATATAAAATGAGC+TGG | - | chr8_1:68895386-68895405 | Msa1210150:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | - | chr8_1:68895457-68895476 | Msa1210150:intron | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | - | chr8_1:68895458-68895477 | Msa1210150:intron | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | + | chr8_1:68895477-68895496 | None:intergenic | 20.0% |
| !!! | CTGTTACTTAGATATAATAT+GGG | + | chr8_1:68895511-68895530 | None:intergenic | 20.0% |
| !! | CAAGTTATATAATATCTGTT+TGG | - | chr8_1:68896159-68896178 | Msa1210150:five_prime_UTR | 20.0% |
| !! | AATGTGTCTGAAATTAATGT+AGG | - | chr8_1:68893256-68893275 | Msa1210150:three_prime_UTR | 25.0% |
| ! | AGTAGTAATCATGTTCATAT+TGG | + | chr8_1:68893282-68893301 | None:intergenic | 25.0% |
| ! | TTTCTTTCAAATTCAGTGTA+GGG | + | chr8_1:68893352-68893371 | None:intergenic | 25.0% |
| !! | TTTTCTTTCAAATTCAGTGT+AGG | + | chr8_1:68893353-68893372 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | - | chr8_1:68893467-68893486 | Msa1210150:CDS | 25.0% |
| !!! | TCCTATGTTTTTTACATTAG+TGG | - | chr8_1:68894396-68894415 | Msa1210150:intron | 25.0% |
| ! | ACCACTAATGTAAAAAACAT+AGG | + | chr8_1:68894400-68894419 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | - | chr8_1:68894579-68894598 | Msa1210150:intron | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | + | chr8_1:68894621-68894640 | None:intergenic | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | - | chr8_1:68894769-68894788 | Msa1210150:CDS | 25.0% |
| ! | GTAACTAGTAATAATGTAAC+AGG | - | chr8_1:68894900-68894919 | Msa1210150:intron | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | + | chr8_1:68895064-68895083 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | + | chr8_1:68895065-68895084 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | - | chr8_1:68895106-68895125 | Msa1210150:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | + | chr8_1:68895111-68895130 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | + | chr8_1:68895215-68895234 | None:intergenic | 25.0% |
| !! | TATAGTTCTGTTTCAATGTT+TGG | + | chr8_1:68895360-68895379 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | + | chr8_1:68895445-68895464 | None:intergenic | 25.0% |
| !! | CCTGTTACTTAGATATAATA+TGG | + | chr8_1:68895512-68895531 | None:intergenic | 25.0% |
| ! | CCATATTATATCTAAGTAAC+AGG | - | chr8_1:68895509-68895528 | Msa1210150:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | + | chr8_1:68895634-68895653 | None:intergenic | 25.0% |
| ! | ACGTAATTTAGTGTAATCAT+AGG | - | chr8_1:68895659-68895678 | Msa1210150:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | + | chr8_1:68895792-68895811 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | - | chr8_1:68895792-68895811 | Msa1210150:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | - | chr8_1:68895793-68895812 | Msa1210150:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | - | chr8_1:68895975-68895994 | Msa1210150:CDS | 25.0% |
| TTCTTTCAAATTCAGTGTAG+GGG | + | chr8_1:68893351-68893370 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | - | chr8_1:68893466-68893485 | Msa1210150:CDS | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | - | chr8_1:68893602-68893621 | Msa1210150:intron | 30.0% | |
| ! | TGCACTTATAACCACTATTT+TGG | - | chr8_1:68893696-68893715 | Msa1210150:intron | 30.0% |
| ! | TACGAATGTTATAGGAGTAT+TGG | + | chr8_1:68893987-68894006 | None:intergenic | 30.0% |
| ACATGTCATACGAATGTTAT+AGG | + | chr8_1:68893995-68894014 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | - | chr8_1:68894182-68894201 | Msa1210150:intron | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | - | chr8_1:68894183-68894202 | Msa1210150:intron | 30.0% | |
| ! | GAGTAACTATTGTTCTTTTG+AGG | - | chr8_1:68894578-68894597 | Msa1210150:intron | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | - | chr8_1:68894651-68894670 | Msa1210150:intron | 30.0% |
| TTAAGCAATAACCATGTAGT+AGG | + | chr8_1:68894689-68894708 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | + | chr8_1:68894877-68894896 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | + | chr8_1:68894878-68894897 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | + | chr8_1:68894879-68894898 | None:intergenic | 30.0% | |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | - | chr8_1:68894937-68894956 | Msa1210150:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | - | chr8_1:68895075-68895094 | Msa1210150:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | + | chr8_1:68895083-68895102 | None:intergenic | 30.0% |
| CAATAAAGATGAGAAGGATA+AGG | + | chr8_1:68895186-68895205 | None:intergenic | 30.0% | |
| GTGTATCTTCACATGTATAA+AGG | + | chr8_1:68895306-68895325 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | - | chr8_1:68895417-68895436 | Msa1210150:intron | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | + | chr8_1:68895556-68895575 | None:intergenic | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | - | chr8_1:68895555-68895574 | Msa1210150:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | + | chr8_1:68895559-68895578 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | + | chr8_1:68895570-68895589 | None:intergenic | 30.0% | |
| !! | TTCTGAAATACTATGAAGCA+CGG | - | chr8_1:68895587-68895606 | Msa1210150:intron | 30.0% |
| ! | CTTCATATCTGGAATATGAT+AGG | - | chr8_1:68895744-68895763 | Msa1210150:intron | 30.0% |
| GAACAATCCCAATGAATATA+TGG | + | chr8_1:68895803-68895822 | None:intergenic | 30.0% | |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | - | chr8_1:68895810-68895829 | Msa1210150:intron | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | + | chr8_1:68895933-68895952 | None:intergenic | 30.0% |
| CTTGTTCAACCTTATCAAAT+TGG | + | chr8_1:68895987-68896006 | None:intergenic | 30.0% | |
| ATAAGGTTGAACAAGTCTAA+GGG | - | chr8_1:68895992-68896011 | Msa1210150:exon | 30.0% | |
| AATGACACTGTTACAATACT+TGG | - | chr8_1:68896114-68896133 | Msa1210150:five_prime_UTR | 30.0% | |
| TGATATATACTTGAGCTGTG+AGG | - | chr8_1:68893323-68893342 | Msa1210150:three_prime_UTR | 35.0% | |
| TTCCAAGTGAGAATTTGAGA+TGG | - | chr8_1:68893410-68893429 | Msa1210150:exon | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | - | chr8_1:68893470-68893489 | Msa1210150:CDS | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | + | chr8_1:68893710-68893729 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | - | chr8_1:68893931-68893950 | Msa1210150:intron | 35.0% | |
| TACTTTGACACTTCTTGAAC+CGG | - | chr8_1:68894051-68894070 | Msa1210150:intron | 35.0% | |
| GTTATATATGTGTCGAACAC+CGG | + | chr8_1:68894073-68894092 | None:intergenic | 35.0% | |
| ! | ACTTTTGAATCTACTGTGTG+TGG | + | chr8_1:68894152-68894171 | None:intergenic | 35.0% |
| GCATAAGGAAAAGAGGATTA+AGG | + | chr8_1:68894547-68894566 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | - | chr8_1:68894548-68894567 | Msa1210150:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | - | chr8_1:68894627-68894646 | Msa1210150:intron | 35.0% |
| GAATAATAGCTCCTACTACA+TGG | - | chr8_1:68894675-68894694 | Msa1210150:intron | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | - | chr8_1:68894810-68894829 | Msa1210150:CDS | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | - | chr8_1:68894958-68894977 | Msa1210150:intron | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | - | chr8_1:68894990-68895009 | Msa1210150:intron | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | + | chr8_1:68895255-68895274 | None:intergenic | 35.0% | |
| AAAAATTTGCAGGTGCCTAA+TGG | + | chr8_1:68895435-68895454 | None:intergenic | 35.0% | |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | - | chr8_1:68895823-68895842 | Msa1210150:intron | 35.0% |
| AATCAGTCCATCAAACTATG+TGG | - | chr8_1:68895894-68895913 | Msa1210150:CDS | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | + | chr8_1:68895951-68895970 | None:intergenic | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | - | chr8_1:68895951-68895970 | Msa1210150:CDS | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | - | chr8_1:68895952-68895971 | Msa1210150:CDS | 35.0% | |
| GATAAGGTTGAACAAGTCTA+AGG | - | chr8_1:68895991-68896010 | Msa1210150:exon | 35.0% | |
| ACTATAATGCAACTTTGCAG+TGG | - | chr8_1:68896049-68896068 | Msa1210150:five_prime_UTR | 35.0% | |
| TGCCATCTCAAATTCTCACT+TGG | + | chr8_1:68893415-68893434 | None:intergenic | 40.0% | |
| ! | TTTGAGATGGCATCATTTGC+AGG | - | chr8_1:68893423-68893442 | Msa1210150:CDS | 40.0% |
| TGTTGATCAACGAAGGGTTA+TGG | - | chr8_1:68894189-68894208 | Msa1210150:intron | 40.0% | |
| AAGTTGTCTCTTACGAAGCA+CGG | + | chr8_1:68894469-68894488 | None:intergenic | 40.0% | |
| !! | CTTTAAGATGACTGGCAGTT+TGG | - | chr8_1:68894635-68894654 | Msa1210150:intron | 40.0% |
| ACAGGTCGAAGCATATAACA+AGG | - | chr8_1:68894918-68894937 | Msa1210150:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | + | chr8_1:68895731-68895750 | None:intergenic | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | - | chr8_1:68895733-68895752 | Msa1210150:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | - | chr8_1:68895851-68895870 | Msa1210150:intron | 40.0% |
| TCATGTGCCACATAGTTTGA+TGG | + | chr8_1:68895904-68895923 | None:intergenic | 40.0% | |
| GAAGCAAGCAAGAGACTCAT+TGG | - | chr8_1:68893376-68893395 | Msa1210150:three_prime_UTR | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | - | chr8_1:68893534-68893553 | Msa1210150:CDS | 45.0% | |
| ! | GTCTAGAATTAGGTGTGTCG+CGG | - | chr8_1:68893958-68893977 | Msa1210150:intron | 45.0% |
| GCACCAAGCATAAGGAAAAG+AGG | + | chr8_1:68894554-68894573 | None:intergenic | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | + | chr8_1:68895544-68895563 | None:intergenic | 45.0% | |
| ATACTATGAAGCACGGTCAC+CGG | - | chr8_1:68895594-68895613 | Msa1210150:intron | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | + | chr8_1:68895858-68895877 | None:intergenic | 45.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | + | chr8_1:68893524-68893543 | None:intergenic | 50.0% |
| CTTCAGATGCCACCATTGCA+AGG | - | chr8_1:68893533-68893552 | Msa1210150:CDS | 50.0% | |
| ! | GCACGGACACGTCTAGAATT+AGG | - | chr8_1:68893948-68893967 | Msa1210150:intron | 50.0% |
| ATTCGTGTCAGTGTCGTGTC+AGG | - | chr8_1:68894428-68894447 | Msa1210150:CDS | 50.0% | |
| ACTCAGCTGCACCAAGCATA+AGG | + | chr8_1:68894562-68894581 | None:intergenic | 50.0% | |
| GCAAGAACACTCCTCGGATT+AGG | + | chr8_1:68895725-68895744 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | - | chr8_1:68895862-68895881 | Msa1210150:intron | 50.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | + | chr8_1:68893545-68893564 | None:intergenic | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | + | chr8_1:68893548-68893567 | None:intergenic | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | - | chr8_1:68893545-68893564 | Msa1210150:CDS | 55.0% |
| ACACGACACAGACACCGACA+CGG | - | chr8_1:68895617-68895636 | Msa1210150:intron | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | - | chr8_1:68895865-68895884 | Msa1210150:intron | 55.0% | |
| ! | GTCGGTGTCTGTGTCGTGTC+CGG | + | chr8_1:68895616-68895635 | None:intergenic | 60.0% |
| GGATTAGGCGTGTCCGGTGT+CGG | + | chr8_1:68895710-68895729 | None:intergenic | 60.0% | |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | + | chr8_1:68895716-68895735 | None:intergenic | 60.0% |
| CAGCGACGCGTATCCGACAC+CGG | - | chr8_1:68895694-68895713 | Msa1210150:intron | 65.0% | |
| CACCGGACACGCCTAATCCG+AGG | - | chr8_1:68895711-68895730 | Msa1210150:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 68893244 | 68896190 | 68893244 | ID=Msa1210150;Name=Msa1210150 |
| chr8_1 | mRNA | 68893244 | 68896190 | 68893244 | ID=Msa1210150-mRNA-1;Parent=Msa1210150;Name=Msa1210150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185|1|1|1|1|1|5|179|181 |
| chr8_1 | exon | 68893244 | 68893602 | 68893244 | ID=Msa1210150-mRNA-1:exon:23046;Parent=Msa1210150-mRNA-1 |
| chr8_1 | exon | 68894423 | 68894512 | 68894423 | ID=Msa1210150-mRNA-1:exon:23045;Parent=Msa1210150-mRNA-1 |
| chr8_1 | exon | 68894603 | 68894643 | 68894603 | ID=Msa1210150-mRNA-1:exon:23044;Parent=Msa1210150-mRNA-1 |
| chr8_1 | exon | 68894762 | 68894858 | 68894762 | ID=Msa1210150-mRNA-1:exon:23043;Parent=Msa1210150-mRNA-1 |
| chr8_1 | exon | 68895868 | 68896190 | 68895868 | ID=Msa1210150-mRNA-1:exon:23042;Parent=Msa1210150-mRNA-1 |
| chr8_1 | five_prime_UTR | 68896006 | 68896190 | 68896006 | ID=Msa1210150-mRNA-1:five_prime_utr;Parent=Msa1210150-mRNA-1 |
| chr8_1 | CDS | 68895868 | 68896005 | 68895868 | ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1 |
| chr8_1 | CDS | 68894762 | 68894858 | 68894762 | ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1 |
| chr8_1 | CDS | 68894603 | 68894643 | 68894603 | ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1 |
| chr8_1 | CDS | 68894423 | 68894512 | 68894423 | ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1 |
| chr8_1 | CDS | 68893423 | 68893602 | 68893423 | ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1 |
| chr8_1 | three_prime_UTR | 68893244 | 68893422 | 68893244 | ID=Msa1210150-mRNA-1:three_prime_utr;Parent=Msa1210150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
