AlfalfaGEDB | Msa1210150

M. sativa cultivar zhongmu-4 / Msa1210150

KEGG: K09377
GO: -
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210150	sp\|Q94JX5\|WLIM1_ARATH	69.143	175	53	1	3	176	2	176	1.51e-89	263

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210150	G7JNV0	95.580	181	8	0	1	181	1	181	7.90e-127	363

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TFs/TRs:

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Gene ID	Type	Classification
Msa1210150	TF	LIM

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0570600	Msa1210150	0.811881	5.609035e-51	-8.615850e-47
Msa0615780	Msa1210150	0.803668	3.123438e-49	-8.615850e-47
Msa0695140	Msa1210150	0.804282	2.327711e-49	-8.615850e-47
Msa1210150	Msa1210250	0.894695	1.936488e-75	-8.615850e-47
Msa1210150	Msa1210850	0.968963	1.981016e-129	-8.615850e-47
Msa1210150	Msa1259260	0.825574	4.352722e-54	-8.615850e-47
Msa1210150	Msa1396720	0.991329	4.454728e-187	-8.615850e-47
Msa1210150	Msa1425760	0.993853	1.043765e-202	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210150	MtrunA17_Chr4g0059371	95.580	181	8	0	1	181	1	181	1.52e-130	363
Msa1210150	MtrunA17_Chr1g0152431	67.429	175	56	1	3	176	2	176	2.70e-89	259
Msa1210150	MtrunA17_Chr3g0113051	54.945	182	77	3	3	181	2	181	5.11e-69	208
Msa1210150	MtrunA17_Chr8g0386501	50.838	179	81	2	3	181	2	173	6.17e-62	191
Msa1210150	MtrunA17_Chr8g0386501	53.521	71	33	0	2	72	93	163	5.81e-20	83.2
Msa1210150	MtrunA17_Chr8g0349391	50.279	179	76	2	3	177	2	171	5.76e-60	185
Msa1210150	MtrunA17_Chr7g0247111	49.133	173	81	2	3	173	2	169	4.86e-58	181
Msa1210150	MtrunA17_Chr7g0247111	43.038	79	45	0	4	82	99	177	1.71e-15	71.2
Msa1210150	MtrunA17_Chr7g0247111	43.056	72	41	0	103	174	3	74	3.38e-15	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210150	AT1G10200.1	69.143	175	53	1	3	176	2	176	1.53e-90	263
Msa1210150	AT3G55770.3	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1210150	AT3G55770.5	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1210150	AT3G55770.2	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1210150	AT3G55770.1	56.111	180	76	2	3	181	2	179	2.45e-70	212
Msa1210150	AT2G39900.1	53.073	179	84	0	3	181	2	180	5.29e-69	208
Msa1210150	AT3G61230.1	53.179	173	78	1	1	173	1	170	8.14e-67	203
Msa1210150	AT3G61230.1	41.758	91	53	0	4	94	100	190	4.36e-18	78.6
Msa1210150	AT3G61230.1	44.444	72	40	0	103	174	4	75	6.22e-16	72.8
Msa1210150	AT1G01780.1	52.326	172	75	2	3	173	2	167	5.38e-63	193

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Find 41 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTGTACCCAATTGAAA+AGG	0.511293	8_1:-68894422	Msa1210150:intron
AATCAGTCCATCAAACTATG+TGG	0.634185	8_1:-68893518	Msa1210150:CDS
AATGACACTGTTACAATACT+TGG	0.434857	8_1:-68893298	Msa1210150:three_prime_UTR
AATGTGTCTGAAATTAATGT+AGG	0.578011	8_1:-68896156	Msa1210150:five_prime_UTR
ACAGGTCGAAGCATATAACA+AGG	0.699921	8_1:-68894494	Msa1210150:intron
ACTATAATGCAACTTTGCAG+TGG	0.646927	8_1:-68893363	Msa1210150:three_prime_UTR
ACTCAGATCTTCAAACAGAA+GGG	0.607367	8_1:-68893460	Msa1210150:CDS
ACTTGCTTCAGGTGCACACA+TGG	0.555007	8_1:-68893550	Msa1210150:CDS
AGTAGTAATCATGTTCATAT+TGG	0.418531	8_1:+68896133	None:intergenic
AGTTGAAAGATCAACTGATC+AGG	0.484362	8_1:-68894602	Msa1210150:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTTCAAATTCAGTGTAG+GGG	+	chr8_1:68893351-68893370	None:intergenic	30.0%
CATGTGAAAAGAAAGTTTAC+TGG	-	chr8_1:68893466-68893485	Msa1210150:CDS	30.0%
TTTCGATGAATGCTTCAATA+AGG	-	chr8_1:68893602-68893621	Msa1210150:intron	30.0%
ACATGTCATACGAATGTTAT+AGG	+	chr8_1:68893995-68894014	None:intergenic	30.0%
TTAGAAATGTTGATCAACGA+AGG	-	chr8_1:68894182-68894201	Msa1210150:intron	30.0%
TAGAAATGTTGATCAACGAA+GGG	-	chr8_1:68894183-68894202	Msa1210150:intron	30.0%
TTAAGCAATAACCATGTAGT+AGG	+	chr8_1:68894689-68894708	None:intergenic	30.0%
AGACAATTTACTTTATGCAG+GGG	+	chr8_1:68894877-68894896	None:intergenic	30.0%
GAGACAATTTACTTTATGCA+GGG	+	chr8_1:68894878-68894897	None:intergenic	30.0%
AGAGACAATTTACTTTATGC+AGG	+	chr8_1:68894879-68894898	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	68893244	68896190	68893244	ID=Msa1210150;Name=Msa1210150
chr8_1	mRNA	68893244	68896190	68893244	ID=Msa1210150-mRNA-1;Parent=Msa1210150;Name=Msa1210150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185\|1\|1\|1\|1\|1\|5\|179\|181
chr8_1	exon	68893244	68893602	68893244	ID=Msa1210150-mRNA-1:exon:23046;Parent=Msa1210150-mRNA-1
chr8_1	exon	68894423	68894512	68894423	ID=Msa1210150-mRNA-1:exon:23045;Parent=Msa1210150-mRNA-1
chr8_1	exon	68894603	68894643	68894603	ID=Msa1210150-mRNA-1:exon:23044;Parent=Msa1210150-mRNA-1
chr8_1	exon	68894762	68894858	68894762	ID=Msa1210150-mRNA-1:exon:23043;Parent=Msa1210150-mRNA-1
chr8_1	exon	68895868	68896190	68895868	ID=Msa1210150-mRNA-1:exon:23042;Parent=Msa1210150-mRNA-1
chr8_1	five_prime_UTR	68896006	68896190	68896006	ID=Msa1210150-mRNA-1:five_prime_utr;Parent=Msa1210150-mRNA-1
chr8_1	CDS	68895868	68896005	68895868	ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1
chr8_1	CDS	68894762	68894858	68894762	ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1
chr8_1	CDS	68894603	68894643	68894603	ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1
chr8_1	CDS	68894423	68894512	68894423	ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1
chr8_1	CDS	68893423	68893602	68893423	ID=Msa1210150-mRNA-1:cds;Parent=Msa1210150-mRNA-1
chr8_1	three_prime_UTR	68893244	68893422	68893244	ID=Msa1210150-mRNA-1:three_prime_utr;Parent=Msa1210150-mRNA-1

Gene Sequence

>Msa1210150

ATGGCATCATTTGCAGGCACTACACAGAAATGTAATACATGTGAAAAGAAAGTTTACTGGGTGGAACAGCTCACTGCTGATAACAAAGTGTACCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACACTCAAGCTGAGTAACTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGTTGAAAGATCAACTGATCAGGTCGAAGCATATAACAAGGTTTCAAGATTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGAATCTTACCATAAGACTTGCTTCAGGTGCACACATGGAGGTTGCATAATCAGTCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGACATCACCATACTCAGATCTTCAAACAGAAGGGTAATTTCAGCCAATTTGATAAGGTTGAACAAGTCTAA

Protein sequence

>Msa1210150

MASFAGTTQKCNTCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIARIYRVERSTDQVEAYNKVSRFFAGTQEKCVGCKKTVYPIEKVAVDGESYHKTCFRCTHGGCIISPSNYVAHEHRLYCRHHHTQIFKQKGNFSQFDKVEQV*