Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259260 | XP_003608956.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 2.57e-126 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259260 | sp|Q94JX5|WLIM1_ARATH | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.68e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259260 | G7JNV0 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 1.23e-126 | 362 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1259260 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603310 | Msa1259260 | 0.809192 | 2.136499e-50 | -8.615850e-47 |
| Msa0676570 | Msa1259260 | -0.803762 | 2.986510e-49 | -8.615850e-47 |
| Msa0224870 | Msa1259260 | 0.800628 | 1.318213e-48 | -8.615850e-47 |
| Msa1254910 | Msa1259260 | 0.809479 | 1.854013e-50 | -8.615850e-47 |
| Msa1259260 | Msa1331570 | -0.818196 | 2.223488e-52 | -8.615850e-47 |
| Msa1259260 | Msa1396720 | 0.825379 | 4.839449e-54 | -8.615850e-47 |
| Msa1259260 | Msa1425760 | 0.829527 | 4.897729e-55 | -8.615850e-47 |
| Msa0449500 | Msa1259260 | 0.811388 | 7.179716e-51 | -8.615850e-47 |
| Msa0480900 | Msa1259260 | -0.804846 | 1.775586e-49 | -8.615850e-47 |
| Msa1210150 | Msa1259260 | 0.825574 | 4.352722e-54 | -8.615850e-47 |
| Msa1210250 | Msa1259260 | 0.915555 | 5.119660e-85 | -8.615850e-47 |
| Msa1210850 | Msa1259260 | 0.800005 | 1.765265e-48 | -8.615850e-47 |
| Msa0548420 | Msa1259260 | 0.807251 | 5.538091e-50 | -8.615850e-47 |
| Msa0570600 | Msa1259260 | 0.804246 | 2.368024e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259260 | MtrunA17_Chr4g0059371 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 2.36e-130 | 362 |
| Msa1259260 | MtrunA17_Chr1g0152431 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 3.22e-89 | 259 |
| Msa1259260 | MtrunA17_Chr3g0113051 | 54.945 | 182 | 77 | 3 | 3 | 181 | 2 | 181 | 4.39e-69 | 208 |
| Msa1259260 | MtrunA17_Chr8g0386501 | 50.838 | 179 | 81 | 2 | 3 | 181 | 2 | 173 | 5.24e-62 | 191 |
| Msa1259260 | MtrunA17_Chr8g0386501 | 53.521 | 71 | 33 | 0 | 2 | 72 | 93 | 163 | 5.94e-20 | 83.2 |
| Msa1259260 | MtrunA17_Chr8g0349391 | 50.838 | 179 | 75 | 2 | 3 | 177 | 2 | 171 | 9.84e-61 | 187 |
| Msa1259260 | MtrunA17_Chr7g0247111 | 49.133 | 173 | 81 | 2 | 3 | 173 | 2 | 169 | 4.08e-58 | 181 |
| Msa1259260 | MtrunA17_Chr7g0247111 | 43.038 | 79 | 45 | 0 | 4 | 82 | 99 | 177 | 1.91e-15 | 71.2 |
| Msa1259260 | MtrunA17_Chr7g0247111 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 2.86e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259260 | AT1G10200.1 | 69.143 | 175 | 53 | 1 | 3 | 176 | 2 | 176 | 1.71e-90 | 263 |
| Msa1259260 | AT3G55770.3 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.22e-71 | 214 |
| Msa1259260 | AT3G55770.5 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.22e-71 | 214 |
| Msa1259260 | AT3G55770.2 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.22e-71 | 214 |
| Msa1259260 | AT3G55770.1 | 56.667 | 180 | 75 | 2 | 3 | 181 | 2 | 179 | 4.22e-71 | 214 |
| Msa1259260 | AT2G39900.1 | 53.631 | 179 | 83 | 0 | 3 | 181 | 2 | 180 | 7.98e-70 | 211 |
| Msa1259260 | AT3G61230.1 | 53.179 | 173 | 78 | 1 | 1 | 173 | 1 | 170 | 6.13e-67 | 204 |
| Msa1259260 | AT3G61230.1 | 40.659 | 91 | 54 | 0 | 4 | 94 | 100 | 190 | 1.25e-17 | 77.4 |
| Msa1259260 | AT3G61230.1 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 5.49e-16 | 73.2 |
| Msa1259260 | AT3G55770.7 | 47.664 | 214 | 75 | 3 | 3 | 181 | 2 | 213 | 1.75e-63 | 196 |
| Msa1259260 | AT2G45800.1 | 53.488 | 172 | 75 | 2 | 3 | 173 | 2 | 169 | 5.88e-63 | 194 |
| Msa1259260 | AT2G45800.1 | 46.512 | 86 | 46 | 0 | 4 | 89 | 99 | 184 | 9.33e-18 | 78.2 |
| Msa1259260 | AT2G45800.1 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 1.13e-16 | 75.1 |
| Msa1259260 | AT1G01780.1 | 52.047 | 171 | 77 | 2 | 3 | 173 | 2 | 167 | 6.61e-63 | 193 |
| Msa1259260 | AT1G01780.1 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.95e-17 | 76.3 |
| Msa1259260 | AT1G10200.2 | 65.909 | 132 | 44 | 1 | 46 | 176 | 3 | 134 | 1.50e-62 | 190 |
| Msa1259260 | AT1G10200.2 | 47.222 | 72 | 38 | 0 | 4 | 75 | 61 | 132 | 2.83e-16 | 72.4 |
| Msa1259260 | AT3G55770.4 | 58.197 | 122 | 48 | 2 | 3 | 123 | 2 | 121 | 1.21e-43 | 142 |
| Msa1259260 | AT3G55770.4 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 2.92e-18 | 77.4 |
| Msa1259260 | AT2G45800.2 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 1.45e-42 | 141 |
| Msa1259260 | AT2G45800.2 | 46.512 | 86 | 46 | 0 | 4 | 89 | 68 | 153 | 3.39e-18 | 78.6 |
| Msa1259260 | AT3G55770.6 | 55.738 | 122 | 51 | 2 | 3 | 123 | 2 | 121 | 1.44e-40 | 134 |
| Msa1259260 | AT3G55770.6 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 1.84e-18 | 77.8 |
Find 42 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGGTTGAACAAGTCTA+AGG | 0.271390 | 8_2:-60819625 | Msa1259260:exon |
| CTTGTTCAACCTTATCAAAT+TGG | 0.314326 | 8_2:+60819632 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8_2:-60820984 | Msa1259260:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8_2:-60822824 | Msa1259260:exon |
| CATGTGAAAAGAAAGTTTAC+TGG | 0.388914 | 8_2:-60822781 | Msa1259260:CDS |
| TTGAAACCTTGTTATATGCT+TGG | 0.394784 | 8_2:+60820698 | None:intergenic |
| CATGGTGATGTCTACAATAA+AGG | 0.396225 | 8_2:+60819686 | None:intergenic |
| AGTAGTAATCATGTTCATAT+TGG | 0.418531 | 8_2:+60822968 | None:intergenic |
| CAAGTTATATAATATCTGTT+TGG | 0.431157 | 8_2:-60819457 | Msa1259260:three_prime_UTR |
| AATGACACTGTTACAATACT+TGG | 0.434857 | 8_2:-60819502 | Msa1259260:three_prime_UTR |
| TTTCTTTCAAATTCAGTGTA+GGG | 0.440988 | 8_2:+60822898 | None:intergenic |
| GAAGCAAGCAAGAGACTCAT+TGG | 0.444861 | 8_2:-60822871 | Msa1259260:five_prime_UTR |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8_2:+60819715 | None:intergenic |
| TAATTTCAGCCAATTTGATA+AGG | 0.454495 | 8_2:-60819641 | Msa1259260:CDS |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8_2:-60819765 | Msa1259260:CDS |
| AGTTGAAAGATCAACTGATC+AGG | 0.484362 | 8_2:-60820809 | Msa1259260:intron |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8_2:-60820992 | Msa1259260:CDS |
| AACAGTGTACCCAATTGAAA+AGG | 0.511293 | 8_2:-60820632 | Msa1259260:intron |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8_2:+60821001 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8_2:+60819761 | None:intergenic |
| TGCTCAGATCTTCAAACAGA+AGG | 0.527238 | 8_2:-60819665 | Msa1259260:CDS |
| TTCTTTCAAATTCAGTGTAG+GGG | 0.532949 | 8_2:+60822899 | None:intergenic |
| TGCCATCTCAAATTCTCACT+TGG | 0.533651 | 8_2:+60822835 | None:intergenic |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8_2:-60822714 | Msa1259260:CDS |
| TGAGTGTGCCCTTGCAATGG+TGG | 0.554362 | 8_2:+60822705 | None:intergenic |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8_2:-60819754 | Msa1259260:CDS |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8_2:-60822713 | Msa1259260:CDS |
| AATGTGTCTGAAATTAATGT+AGG | 0.578011 | 8_2:-60822991 | Msa1259260:five_prime_UTR |
| ATAAGGTTGAACAAGTCTAA+GGG | 0.583079 | 8_2:-60819624 | Msa1259260:exon |
| CCTTGAGTGTGCCCTTGCAA+TGG | 0.588637 | 8_2:+60822702 | None:intergenic |
| ATGTGAAAAGAAAGTTTACT+GGG | 0.603879 | 8_2:-60822780 | Msa1259260:CDS |
| TTCCAAGTGAGAATTTGAGA+TGG | 0.619521 | 8_2:-60822837 | Msa1259260:exon |
| TCTGTTTGAAGATCTGAGCA+TGG | 0.621276 | 8_2:+60819668 | None:intergenic |
| GCTCAGATCTTCAAACAGAA+GGG | 0.622874 | 8_2:-60819664 | Msa1259260:CDS |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8_2:-60819722 | Msa1259260:CDS |
| ACTATAATGCAACTTTGCAG+TGG | 0.646927 | 8_2:-60819567 | Msa1259260:three_prime_UTR |
| CCATTGCAAGGGCACACTCA+AGG | 0.651170 | 8_2:-60822702 | Msa1259260:intron |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8_2:-60819751 | Msa1259260:CDS |
| ACAGGTCCAAGCATATAACA+AGG | 0.699921 | 8_2:-60820704 | Msa1259260:intron |
| TGAAAAGAAAGTTTACTGGG+TGG | 0.703991 | 8_2:-60822777 | Msa1259260:CDS |
| TGATATATACTTGAGCTGTG+AGG | 0.730347 | 8_2:-60822924 | Msa1259260:five_prime_UTR |
| GGCATCTGAAGCAAGACTTG+TGG | 0.735982 | 8_2:+60822726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTCTTTACTTTTTATTT+TGG | - | chr8_2:60819906-60819925 | Msa1259260:intron | 10.0% |
| !! | AAGAAAAAAATAATGTATTT+AGG | + | chr8_2:60820866-60820885 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTCAATTGTAAA+TGG | - | chr8_2:60821071-60821090 | Msa1259260:intron | 10.0% |
| !! | ATAAATTAATATATAGATAG+CGG | - | chr8_2:60821200-60821219 | Msa1259260:intron | 10.0% |
| !! | AGTTAGTATTTAATTAATTA+AGG | - | chr8_2:60822289-60822308 | Msa1259260:intron | 10.0% |
| !! | GTTAGTATTTAATTAATTAA+GGG | - | chr8_2:60822290-60822309 | Msa1259260:intron | 10.0% |
| !! | TTCAGAAATCTTTATAAATT+TGG | - | chr8_2:60819858-60819877 | Msa1259260:intron | 15.0% |
| !!! | TGGTAACAATATTTTATAAA+GGG | + | chr8_2:60820323-60820342 | None:intergenic | 15.0% |
| !!! | ATGGTAACAATATTTTATAA+AGG | + | chr8_2:60820324-60820343 | None:intergenic | 15.0% |
| !!! | AAAATATTTTCACATGAAAT+TGG | - | chr8_2:60820588-60820607 | Msa1259260:intron | 15.0% |
| !!! | ATTTTTCAATTACATATGAT+TGG | + | chr8_2:60820745-60820764 | None:intergenic | 15.0% |
| !! | AAAAGTTCTATAACAATATT+TGG | + | chr8_2:60821108-60821127 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | - | chr8_2:60821958-60821977 | Msa1259260:intron | 15.0% |
| !! | ATTTAAAAATAAAGATGAGA+AGG | + | chr8_2:60822021-60822040 | None:intergenic | 15.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | + | chr8_2:60822112-60822131 | None:intergenic | 15.0% |
| !!! | TTGTTACTTAGATATAATAT+GGG | + | chr8_2:60822343-60822362 | None:intergenic | 15.0% |
| !! | TTTGAAAAAATGACATAATT+CGG | - | chr8_2:60822481-60822500 | Msa1259260:intron | 15.0% |
| !! | GAAAACTAAAAACAAAAGTT+TGG | + | chr8_2:60819782-60819801 | None:intergenic | 20.0% |
| !! | AAGTGCATAATAATCTAAAA+GGG | + | chr8_2:60819887-60819906 | None:intergenic | 20.0% |
| !! | TAAGTGCATAATAATCTAAA+AGG | + | chr8_2:60819888-60819907 | None:intergenic | 20.0% |
| !!! | TACTTTTTATTTTGGATGAA+TGG | - | chr8_2:60819914-60819933 | Msa1259260:intron | 20.0% |
| !! | AATTAAACTGCAATGTAATT+GGG | + | chr8_2:60820132-60820151 | None:intergenic | 20.0% |
| !!! | GGTAACAATATTTTATAAAG+GGG | + | chr8_2:60820322-60820341 | None:intergenic | 20.0% |
| !! | TATAAGTGTTATATATGTGT+CGG | + | chr8_2:60820915-60820934 | None:intergenic | 20.0% |
| !!! | TCCTATGTTTTTTACATTAA+CGG | - | chr8_2:60821231-60821250 | Msa1259260:intron | 20.0% |
| !! | ATAGATATTAAACAGATGAA+AGG | + | chr8_2:60821594-60821613 | None:intergenic | 20.0% |
| !!! | ATACATATACCTTTTCAATT+GGG | + | chr8_2:60821831-60821850 | None:intergenic | 20.0% |
| !!! | AATACATATACCTTTTCAAT+TGG | + | chr8_2:60821832-60821851 | None:intergenic | 20.0% |
| !!! | CTTGTTACTTAGATATAATA+TGG | + | chr8_2:60822344-60822363 | None:intergenic | 20.0% |
| !! | CAAGTTATATAATATCTGTT+TGG | - | chr8_2:60822994-60823013 | Msa1259260:five_prime_UTR | 20.0% |
| !! | AATGTGTCTGAAATTAATGT+AGG | - | chr8_2:60819460-60819479 | Msa1259260:three_prime_UTR | 25.0% |
| ! | AGTAGTAATCATGTTCATAT+TGG | + | chr8_2:60819486-60819505 | None:intergenic | 25.0% |
| ! | TTTCTTTCAAATTCAGTGTA+GGG | + | chr8_2:60819556-60819575 | None:intergenic | 25.0% |
| !! | TTTTCTTTCAAATTCAGTGT+AGG | + | chr8_2:60819557-60819576 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAAAGTTTACT+GGG | - | chr8_2:60819671-60819690 | Msa1259260:CDS | 25.0% |
| ! | AAAAATTGAACCGAATTGAA+TGG | - | chr8_2:60820059-60820078 | Msa1259260:intron | 25.0% |
| ! | CAATTAAACTGCAATGTAAT+TGG | + | chr8_2:60820133-60820152 | None:intergenic | 25.0% |
| ! | ATTGCAGTTTAATTGAACTA+AGG | - | chr8_2:60820138-60820157 | Msa1259260:intron | 25.0% |
| ! | ACCGTTAATGTAAAAAACAT+AGG | + | chr8_2:60821235-60821254 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | - | chr8_2:60821411-60821430 | Msa1259260:intron | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | + | chr8_2:60821453-60821472 | None:intergenic | 25.0% |
| ! | GTTTAATATCTATTGCTTGT+AGG | - | chr8_2:60821601-60821620 | Msa1259260:intron | 25.0% |
| ! | CTAGTAACTAATAATGTAAC+AGG | - | chr8_2:60821729-60821748 | Msa1259260:intron | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | + | chr8_2:60821893-60821912 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | + | chr8_2:60821894-60821913 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | - | chr8_2:60821935-60821954 | Msa1259260:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | + | chr8_2:60821940-60821959 | None:intergenic | 25.0% |
| ! | AAATAAAGATGAGAAGGATA+AGG | + | chr8_2:60822015-60822034 | None:intergenic | 25.0% |
| ! | TAGTATGTCAGAAAAAAAGA+TGG | + | chr8_2:60822049-60822068 | None:intergenic | 25.0% |
| ! | GAAATATACATAAAATGAGC+TGG | - | chr8_2:60822218-60822237 | Msa1259260:intron | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | + | chr8_2:60822277-60822296 | None:intergenic | 25.0% |
| ! | ATATATTGGACAATTTGTGT+TGG | + | chr8_2:60822388-60822407 | None:intergenic | 25.0% |
| ! | AACACAAATTGTCCAATATA+TGG | - | chr8_2:60822387-60822406 | Msa1259260:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | + | chr8_2:60822468-60822487 | None:intergenic | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | + | chr8_2:60822627-60822646 | None:intergenic | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | - | chr8_2:60822627-60822646 | Msa1259260:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | - | chr8_2:60822628-60822647 | Msa1259260:intron | 25.0% |
| ! | TAATTTCAGCCAATTTGATA+AGG | - | chr8_2:60822810-60822829 | Msa1259260:CDS | 25.0% |
| TTCTTTCAAATTCAGTGTAG+GGG | + | chr8_2:60819555-60819574 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGTTTAC+TGG | - | chr8_2:60819670-60819689 | Msa1259260:CDS | 30.0% | |
| TTTCGATGAATGCTTCAATA+AGG | - | chr8_2:60819806-60819825 | Msa1259260:intron | 30.0% | |
| ACCGAATTGAATGGTTTAAT+CGG | - | chr8_2:60820068-60820087 | Msa1259260:intron | 30.0% | |
| ACCGATTAAACCATTCAATT+CGG | + | chr8_2:60820072-60820091 | None:intergenic | 30.0% | |
| AAATCAATCGACAAACTAAC+AGG | + | chr8_2:60820106-60820125 | None:intergenic | 30.0% | |
| TTTATAAAGGGGATAAGAGA+TGG | + | chr8_2:60820311-60820330 | None:intergenic | 30.0% | |
| TTTGCACATCTTTACTCTTT+AGG | - | chr8_2:60820440-60820459 | Msa1259260:intron | 30.0% | |
| CCAAAATAGTGGTTATAAGT+GGG | + | chr8_2:60820547-60820566 | None:intergenic | 30.0% | |
| !! | TCAGTTCTGAAAATATACTG+AGG | + | chr8_2:60820713-60820732 | None:intergenic | 30.0% |
| ! | TCAGTATATTTTCAGAACTG+AGG | - | chr8_2:60820712-60820731 | Msa1259260:intron | 30.0% |
| ACATGTCATACGAATGTTAT+AGG | + | chr8_2:60820830-60820849 | None:intergenic | 30.0% | |
| TTAGAAATGTTGATCAACGA+AGG | - | chr8_2:60821017-60821036 | Msa1259260:CDS | 30.0% | |
| TAGAAATGTTGATCAACGAA+GGG | - | chr8_2:60821018-60821037 | Msa1259260:CDS | 30.0% | |
| ! | GAGTAACTATTGTTCTTTTG+AGG | - | chr8_2:60821410-60821429 | Msa1259260:intron | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | - | chr8_2:60821483-60821502 | Msa1259260:intron | 30.0% |
| TTAAGCAATAACCATGTAGT+AGG | + | chr8_2:60821521-60821540 | None:intergenic | 30.0% | |
| AGACAATTTACTTTATGCAG+GGG | + | chr8_2:60821709-60821728 | None:intergenic | 30.0% | |
| GAGACAATTTACTTTATGCA+GGG | + | chr8_2:60821710-60821729 | None:intergenic | 30.0% | |
| AGAGACAATTTACTTTATGC+AGG | + | chr8_2:60821711-60821730 | None:intergenic | 30.0% | |
| ! | TTGAAACCTTGTTATATGCT+TGG | + | chr8_2:60821756-60821775 | None:intergenic | 30.0% |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | - | chr8_2:60821766-60821785 | Msa1259260:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | - | chr8_2:60821904-60821923 | Msa1259260:intron | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | + | chr8_2:60821912-60821931 | None:intergenic | 30.0% |
| GTGTATCTTCACATGTATAA+AGG | + | chr8_2:60822140-60822159 | None:intergenic | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | - | chr8_2:60822249-60822268 | Msa1259260:intron | 30.0% | |
| ! | CTTCATATCTGGAATATGAT+AGG | - | chr8_2:60822579-60822598 | Msa1259260:intron | 30.0% |
| GAACAATCCCAATGAATATA+TGG | + | chr8_2:60822638-60822657 | None:intergenic | 30.0% | |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | - | chr8_2:60822645-60822664 | Msa1259260:intron | 30.0% |
| CTTGTTCAACCTTATCAAAT+TGG | + | chr8_2:60822822-60822841 | None:intergenic | 30.0% | |
| ATAAGGTTGAACAAGTCTAA+GGG | - | chr8_2:60822827-60822846 | Msa1259260:exon | 30.0% | |
| AATGACACTGTTACAATACT+TGG | - | chr8_2:60822949-60822968 | Msa1259260:five_prime_UTR | 30.0% | |
| TGATATATACTTGAGCTGTG+AGG | - | chr8_2:60819527-60819546 | Msa1259260:three_prime_UTR | 35.0% | |
| TTCCAAGTGAGAATTTGAGA+TGG | - | chr8_2:60819614-60819633 | Msa1259260:exon | 35.0% | |
| TGAAAAGAAAGTTTACTGGG+TGG | - | chr8_2:60819674-60819693 | Msa1259260:CDS | 35.0% | |
| ATACTTTAGACTTCAGTGCA+TGG | - | chr8_2:60819945-60819964 | Msa1259260:intron | 35.0% | |
| ! | TCGACAAACTAACAGGTTTT+TGG | + | chr8_2:60820099-60820118 | None:intergenic | 35.0% |
| ATTGAACTAAGGTTGAACTG+CGG | - | chr8_2:60820149-60820168 | Msa1259260:intron | 35.0% | |
| GTTAAGCATTCTTTGCATGA+TGG | + | chr8_2:60820343-60820362 | None:intergenic | 35.0% | |
| TTGTTGAAAACGACATCTAG+AGG | + | chr8_2:60820372-60820391 | None:intergenic | 35.0% | |
| GTAGAGAACAAGAAAATGCA+TGG | + | chr8_2:60820416-60820435 | None:intergenic | 35.0% | |
| ACATCTTTACTCTTTAGGCA+TGG | - | chr8_2:60820445-60820464 | Msa1259260:intron | 35.0% | |
| ! | CCCACTTATAACCACTATTT+TGG | - | chr8_2:60820544-60820563 | Msa1259260:intron | 35.0% |
| GCCAAAATAGTGGTTATAAG+TGG | + | chr8_2:60820548-60820567 | None:intergenic | 35.0% | |
| GATTTACACTGCCAAAATAG+TGG | + | chr8_2:60820558-60820577 | None:intergenic | 35.0% | |
| GAAATTATGTGACAGAAGCA+CGG | - | chr8_2:60820766-60820785 | Msa1259260:intron | 35.0% | |
| ! | TACGAATGTTATAGGAGTGT+CGG | + | chr8_2:60820822-60820841 | None:intergenic | 35.0% |
| TACTTTGACACTTCTTGAAC+CGG | - | chr8_2:60820886-60820905 | Msa1259260:intron | 35.0% | |
| ! | ACTTTTGAATCTACTGTGTG+TGG | + | chr8_2:60820987-60821006 | None:intergenic | 35.0% |
| AGAAAGTTGTCTCTTACGAA+CGG | + | chr8_2:60821304-60821323 | None:intergenic | 35.0% | |
| GCATAAGGAAAAGAGGATTA+AGG | + | chr8_2:60821379-60821398 | None:intergenic | 35.0% | |
| ! | AATCCTCTTTTCCTTATGCT+TGG | - | chr8_2:60821380-60821399 | Msa1259260:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | - | chr8_2:60821459-60821478 | Msa1259260:intron | 35.0% |
| GAATAATAGCTCCTACTACA+TGG | - | chr8_2:60821507-60821526 | Msa1259260:intron | 35.0% | |
| AGTTGAAAGATCAACTGATC+AGG | - | chr8_2:60821642-60821661 | Msa1259260:intron | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | - | chr8_2:60821787-60821806 | Msa1259260:intron | 35.0% | |
| AACAGTGTACCCAATTGAAA+AGG | - | chr8_2:60821819-60821838 | Msa1259260:intron | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | + | chr8_2:60822089-60822108 | None:intergenic | 35.0% | |
| AAAAATTTGCAGGTGCCTAA+TGG | + | chr8_2:60822267-60822286 | None:intergenic | 35.0% | |
| ! | GACGGATTTGAACCATATAT+TGG | + | chr8_2:60822402-60822421 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGGTAGCTGTTGA+TGG | - | chr8_2:60822658-60822677 | Msa1259260:intron | 35.0% |
| AATCAGTCCATCAAACTATG+TGG | - | chr8_2:60822729-60822748 | Msa1259260:CDS | 35.0% | |
| ! | CATGGTGATGTCTACAATAA+AGG | + | chr8_2:60822768-60822787 | None:intergenic | 35.0% |
| GATAAGGTTGAACAAGTCTA+AGG | - | chr8_2:60822826-60822845 | Msa1259260:exon | 35.0% | |
| ACTATAATGCAACTTTGCAG+TGG | - | chr8_2:60822884-60822903 | Msa1259260:five_prime_UTR | 35.0% | |
| TGCCATCTCAAATTCTCACT+TGG | + | chr8_2:60819619-60819638 | None:intergenic | 40.0% | |
| ! | TTTGAGATGGCATCATTTGC+AGG | - | chr8_2:60819627-60819646 | Msa1259260:CDS | 40.0% |
| TGACCGATTGAATCATGAGT+CGG | - | chr8_2:60820271-60820290 | Msa1259260:intron | 40.0% | |
| TCTCCGACTCATGATTCAAT+CGG | + | chr8_2:60820277-60820296 | None:intergenic | 40.0% | |
| TGGGAGTAACATTCACTCAT+GGG | + | chr8_2:60820528-60820547 | None:intergenic | 40.0% | |
| ! | ATCTAGAATTAGGTGTGTCG+CGG | - | chr8_2:60820793-60820812 | Msa1259260:intron | 40.0% |
| GTTATATATGTGTCGGACAC+CGG | + | chr8_2:60820908-60820927 | None:intergenic | 40.0% | |
| TGTTGATCAACGAAGGGTTA+TGG | - | chr8_2:60821024-60821043 | Msa1259260:CDS | 40.0% | |
| !! | CTTTAAGATGACTGGCAGTT+TGG | - | chr8_2:60821467-60821486 | Msa1259260:intron | 40.0% |
| ACAGGTCCAAGCATATAACA+AGG | - | chr8_2:60821747-60821766 | Msa1259260:intron | 40.0% | |
| ! | ATTTGTGTTGGTATGAGCTG+TGG | + | chr8_2:60822376-60822395 | None:intergenic | 40.0% |
| TCAAATCCGTCTGAAAAGCA+CGG | - | chr8_2:60822411-60822430 | Msa1259260:intron | 40.0% | |
| TATGAAGCAAGAACACTCCT+CGG | + | chr8_2:60822566-60822585 | None:intergenic | 40.0% | |
| GAGTGTTCTTGCTTCATATC+TGG | - | chr8_2:60822568-60822587 | Msa1259260:intron | 40.0% | |
| ! | CTTACCATAAGACTTGCTTC+AGG | - | chr8_2:60822686-60822705 | Msa1259260:intron | 40.0% |
| TCATGTGCCACATAGTTTGA+TGG | + | chr8_2:60822739-60822758 | None:intergenic | 40.0% | |
| TCTGTTTGAAGATCTGAGCA+TGG | + | chr8_2:60822786-60822805 | None:intergenic | 40.0% | |
| TGCTCAGATCTTCAAACAGA+AGG | - | chr8_2:60822786-60822805 | Msa1259260:CDS | 40.0% | |
| GCTCAGATCTTCAAACAGAA+GGG | - | chr8_2:60822787-60822806 | Msa1259260:CDS | 40.0% | |
| GAAGCAAGCAAGAGACTCAT+TGG | - | chr8_2:60819580-60819599 | Msa1259260:three_prime_UTR | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | - | chr8_2:60819738-60819757 | Msa1259260:CDS | 45.0% | |
| GTTGAACTGCGGTATGTAGT+TGG | - | chr8_2:60820160-60820179 | Msa1259260:intron | 45.0% | |
| GTGGGAGTAACATTCACTCA+TGG | + | chr8_2:60820529-60820548 | None:intergenic | 45.0% | |
| ! | GCACGGACACATCTAGAATT+AGG | - | chr8_2:60820783-60820802 | Msa1259260:intron | 45.0% |
| GCACCAAGCATAAGGAAAAG+AGG | + | chr8_2:60821386-60821405 | None:intergenic | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | + | chr8_2:60822693-60822712 | None:intergenic | 45.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | + | chr8_2:60819728-60819747 | None:intergenic | 50.0% |
| CTTCAGATGCCACCATTGCA+AGG | - | chr8_2:60819737-60819756 | Msa1259260:CDS | 50.0% | |
| ATTCGTGTCAGTGTCGTGTC+AGG | - | chr8_2:60821263-60821282 | Msa1259260:intron | 50.0% | |
| ACTCAGCTGCACCAAGCATA+AGG | + | chr8_2:60821394-60821413 | None:intergenic | 50.0% | |
| CGGTGTCTATGTCGTGTGTT+CGG | + | chr8_2:60822440-60822459 | None:intergenic | 50.0% | |
| ! | TATTATCCGTGTCGGCGTGT+CGG | + | chr8_2:60822460-60822479 | None:intergenic | 50.0% |
| GCAAGAACACTCCTCGGATT+AGG | + | chr8_2:60822560-60822579 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | - | chr8_2:60822697-60822716 | Msa1259260:intron | 50.0% | |
| TGAGTGTGCCCTTGCAATGG+TGG | + | chr8_2:60819749-60819768 | None:intergenic | 55.0% | |
| CCTTGAGTGTGCCCTTGCAA+TGG | + | chr8_2:60819752-60819771 | None:intergenic | 55.0% | |
| ! | CCATTGCAAGGGCACACTCA+AGG | - | chr8_2:60819749-60819768 | Msa1259260:CDS | 55.0% |
| ! | CGGTGTCCGTGCTTTTCAGA+CGG | + | chr8_2:60822420-60822439 | None:intergenic | 55.0% |
| TGCTTCAGGTGCACACATGG+AGG | - | chr8_2:60822700-60822719 | Msa1259260:intron | 55.0% | |
| TAGACACCGACACGCCGACA+CGG | - | chr8_2:60822451-60822470 | Msa1259260:intron | 60.0% | |
| ACAGCGACGTGTGTCCGACA+CGG | - | chr8_2:60822527-60822546 | Msa1259260:intron | 60.0% | |
| GATTAGGCGTGTCCCCGTGT+CGG | + | chr8_2:60822544-60822563 | None:intergenic | 60.0% | |
| CAGCGACGTGTGTCCGACAC+GGG | - | chr8_2:60822528-60822547 | Msa1259260:intron | 65.0% | |
| AGCGACGTGTGTCCGACACG+GGG | - | chr8_2:60822529-60822548 | Msa1259260:intron | 65.0% | |
| ACGGGGACACGCCTAATCCG+AGG | - | chr8_2:60822546-60822565 | Msa1259260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 60819448 | 60823025 | 60819448 | ID=Msa1259260;Name=Msa1259260 |
| chr8_2 | mRNA | 60819448 | 60823025 | 60819448 | ID=Msa1259260-mRNA-1;Parent=Msa1259260;Name=Msa1259260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185|1|1|1|1|1|5|179|181 |
| chr8_2 | exon | 60819448 | 60819806 | 60819448 | ID=Msa1259260-mRNA-1:exon:19103;Parent=Msa1259260-mRNA-1 |
| chr8_2 | exon | 60820633 | 60820722 | 60820633 | ID=Msa1259260-mRNA-1:exon:19102;Parent=Msa1259260-mRNA-1 |
| chr8_2 | exon | 60820810 | 60820850 | 60820810 | ID=Msa1259260-mRNA-1:exon:19101;Parent=Msa1259260-mRNA-1 |
| chr8_2 | exon | 60820969 | 60821065 | 60820969 | ID=Msa1259260-mRNA-1:exon:19100;Parent=Msa1259260-mRNA-1 |
| chr8_2 | exon | 60822703 | 60823025 | 60822703 | ID=Msa1259260-mRNA-1:exon:19099;Parent=Msa1259260-mRNA-1 |
| chr8_2 | five_prime_UTR | 60822841 | 60823025 | 60822841 | ID=Msa1259260-mRNA-1:five_prime_utr;Parent=Msa1259260-mRNA-1 |
| chr8_2 | CDS | 60822703 | 60822840 | 60822703 | ID=Msa1259260-mRNA-1:cds;Parent=Msa1259260-mRNA-1 |
| chr8_2 | CDS | 60820969 | 60821065 | 60820969 | ID=Msa1259260-mRNA-1:cds;Parent=Msa1259260-mRNA-1 |
| chr8_2 | CDS | 60820810 | 60820850 | 60820810 | ID=Msa1259260-mRNA-1:cds;Parent=Msa1259260-mRNA-1 |
| chr8_2 | CDS | 60820633 | 60820722 | 60820633 | ID=Msa1259260-mRNA-1:cds;Parent=Msa1259260-mRNA-1 |
| chr8_2 | CDS | 60819627 | 60819806 | 60819627 | ID=Msa1259260-mRNA-1:cds;Parent=Msa1259260-mRNA-1 |
| chr8_2 | three_prime_UTR | 60819448 | 60819626 | 60819448 | ID=Msa1259260-mRNA-1:three_prime_utr;Parent=Msa1259260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
