AlfalfaGEDB | Msa1211010

M. sativa cultivar zhongmu-4 / Msa1211010

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211010	XP_013443969.1	90.058	171	8	3	1	167	1	166	1.71e-53	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032080	Msa1211010	0.805875	1.080779e-49	-8.615850e-47
Msa0189030	Msa1211010	0.807656	4.544365e-50	-8.615850e-47
Msa0236420	Msa1211010	0.809972	1.452764e-50	-8.615850e-47
Msa0270960	Msa1211010	0.810631	1.047365e-50	-8.615850e-47
Msa0286670	Msa1211010	0.818843	1.585934e-52	-8.615850e-47
Msa0309270	Msa1211010	0.819863	9.287203e-53	-8.615850e-47
Msa0566350	Msa1211010	0.802955	4.387241e-49	-8.615850e-47
Msa0654310	Msa1211010	0.809061	2.278875e-50	-8.615850e-47
Msa0689370	Msa1211010	0.907596	4.270811e-81	-8.615850e-47
Msa0722070	Msa1211010	0.801506	8.720440e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1211010	MtrunA17_Chr8g0337261	84.615	169	7	2	1	167	1	152	2.40e-56	174
Msa1211010	MtrunA17_Chr8g0337251	62.275	167	27	7	1	167	1	131	6.67e-31	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 75 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGCGTGGATCTGGTAT+AGG	0.462773	8_1:-70385549	Msa1211010:intron
AACAGACCTAAATAAAGTTG+AGG	0.548568	8_1:+70385140	None:intergenic
AAGCATGGTAGGTTTGGTTT+TGG	0.332336	8_1:-70385399	Msa1211010:CDS
AAGCGATGGAAGTGATGCAG+GGG	0.637098	8_1:-70385351	Msa1211010:exon
AAGTATAAGCATGGAAAATT+TGG	0.307873	8_1:-70385432	Msa1211010:CDS
AAGTTTAAGCGTGGAAAATT+TGG	0.266461	8_1:-70385375	Msa1211010:CDS
ACAGACCTAAATAAAGTTGA+GGG	0.520171	8_1:+70385141	None:intergenic
ACGGCATATCCACCTCAAGG+AGG	0.749279	8_1:-70386211	Msa1211010:CDS
AGATGGTTGATGATGATATC+CGG	0.500001	8_1:+70386120	None:intergenic
AGGAGGATTAATTGCAGGGG+CGG	0.617439	8_1:-70385529	Msa1211010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCTATTACAGAACAATAG+CGG	+	chr8_1:70385575-70385594	None:intergenic	30.0%
CAGAATTTGTACAAACTATG+TGG	-	chr8_1:70385655-70385674	Msa1211010:intron	30.0%
TAACACATGCAAGAAACATT+AGG	+	chr8_1:70385770-70385789	None:intergenic	30.0%
GTAAAACAAGACGTAATATC+AGG	+	chr8_1:70385812-70385831	None:intergenic	30.0%
TATCATCATGGTTATGGTTA+TGG	-	chr8_1:70386000-70386019	Msa1211010:intron	30.0%
AAGTTTAAGCGTGGAAAATT+TGG	-	chr8_1:70386087-70386106	Msa1211010:CDS	30.0%
ACAGACCTAAATAAAGTTGA+GGG	+	chr8_1:70386324-70386343	None:intergenic	30.0%
AACAGACCTAAATAAAGTTG+AGG	+	chr8_1:70386325-70386344	None:intergenic	30.0%
CATCTATTACAGAACAATAG+CGG	+	chr8_1:70385575-70385594	None:intergenic	30.0%
CAGAATTTGTACAAACTATG+TGG	-	chr8_1:70385655-70385674	Msa1211010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	70385107	70386377	70385107	ID=Msa1211010;Name=Msa1211010
chr8_1	mRNA	70385107	70386377	70385107	ID=Msa1211010-mRNA-1;Parent=Msa1211010;Name=Msa1211010-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|1\|0.5\|1\|1\|1\|2\|252\|167
chr8_1	exon	70385107	70385567	70385107	ID=Msa1211010-mRNA-1:exon:23604;Parent=Msa1211010-mRNA-1
chr8_1	exon	70386083	70386377	70386083	ID=Msa1211010-mRNA-1:exon:23603;Parent=Msa1211010-mRNA-1
chr8_1	CDS	70386083	70386377	70386083	ID=Msa1211010-mRNA-1:cds;Parent=Msa1211010-mRNA-1
chr8_1	CDS	70385359	70385567	70385359	ID=Msa1211010-mRNA-1:cds;Parent=Msa1211010-mRNA-1
chr8_1	three_prime_UTR	70385107	70385358	70385107	ID=Msa1211010-mRNA-1:three_prime_utr;Parent=Msa1211010-mRNA-1

Gene Sequence

>Msa1211010

ATGAACAATGGTAGAAACAAGCATGATCAAGAATCTAGTGAGAGAGGTCTGTTTTCACATATAACAGGCTATCCAGCAGCACCACCTTATCCTCCTCCACCTGGTTCTTATTCCTATCCACCTCAAGGAGGTATATCCACCGCAACGGCATATCCACCTCAAGGAGGTTATTATCCTTCACAATATCCACCACATGCTGCAGGAGGAGGGTATCCACCTTCCGGTTATCCTCATTCCGGATATCATCATCAACCATCTTATCATGCTCCACAATATGGCTATCCATATCCTTCTGGGCGTGGATCTGGTATAGGAGGATTAATTGCAGGGGCGGCAGCTGCATACGGTGCTCACCATCTGTCGCATGGACATGGAGGTTATCATCATGGTTATGGTTATGGACATGGGAAGTATAAGCATGGAAAATTTGGCAAGCGTTGGAAGCATGGTAGGTTTGGTTTTGGAAAGTTTAAGCGTGGAAAATTTGGCAAGCGATGGAAGTGA

Protein sequence

>Msa1211010

MNNGRNKHDQESSERGLFSHITGYPAAPPYPPPPGSYSYPPQGGISTATAYPPQGGYYPSQYPPHAAGGGYPPSGYPHSGYHHQPSYHAPQYGYPYPSGRGSGIGGLIAGAAAAYGAHHLSHGHGGYHHGYGYGHGKYKHGKFGKRWKHGRFGFGKFKRGKFGKRWK*