Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215140 | XP_003609428.2 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215140 | sp|Q93ZH9|HHP1_ARATH | 55.000 | 360 | 115 | 3 | 4 | 363 | 20 | 332 | 9.41e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215140 | G7JFE9 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0207530 | Msa1215140 | 0.806020 | 1.007460e-49 | -8.615850e-47 |
| Msa0207900 | Msa1215140 | 0.807389 | 5.177049e-50 | -8.615850e-47 |
| Msa0392410 | Msa1215140 | 0.812727 | 3.665706e-51 | -8.615850e-47 |
| Msa0392480 | Msa1215140 | 0.810793 | 9.657908e-51 | -8.615850e-47 |
| Msa1178470 | Msa1215140 | 0.807843 | 4.146479e-50 | -8.615850e-47 |
| Msa1215140 | Msa1215460 | 0.869221 | 3.643397e-66 | -8.615850e-47 |
| Msa1215140 | Msa1301170 | 0.924983 | 3.391029e-90 | -8.615850e-47 |
| Msa1215140 | Msa1330680 | 0.946441 | 4.592842e-105 | -8.615850e-47 |
| Msa0487560 | Msa1215140 | 0.805583 | 1.244467e-49 | -8.615850e-47 |
| Msa0487620 | Msa1215140 | 0.806308 | 8.762364e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215140 | MtrunA17_Chr4g0064481 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Msa1215140 | MtrunA17_Chr2g0305481 | 49.258 | 337 | 143 | 5 | 39 | 358 | 4 | 329 | 8.01e-107 | 317 |
| Msa1215140 | MtrunA17_Chr5g0401021 | 45.480 | 354 | 159 | 7 | 42 | 363 | 28 | 379 | 1.53e-96 | 292 |
| Msa1215140 | MtrunA17_Chr3g0134921 | 41.371 | 394 | 184 | 6 | 17 | 363 | 3 | 396 | 1.71e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215140 | AT5G20270.1 | 55.000 | 360 | 115 | 3 | 4 | 363 | 20 | 332 | 9.57e-139 | 398 |
| Msa1215140 | AT4G37680.3 | 43.401 | 394 | 179 | 9 | 10 | 363 | 1 | 390 | 1.72e-98 | 298 |
| Msa1215140 | AT4G37680.4 | 43.401 | 394 | 179 | 9 | 10 | 363 | 1 | 390 | 1.72e-98 | 298 |
| Msa1215140 | AT2G24150.1 | 42.614 | 352 | 179 | 5 | 10 | 356 | 1 | 334 | 8.43e-98 | 294 |
| Msa1215140 | AT4G37680.1 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1215140 | AT4G37680.5 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1215140 | AT4G37680.2 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1215140 | AT4G30850.2 | 44.543 | 339 | 163 | 4 | 37 | 358 | 20 | 350 | 1.37e-96 | 291 |
| Msa1215140 | AT4G30850.1 | 44.543 | 339 | 163 | 4 | 37 | 358 | 20 | 350 | 1.37e-96 | 291 |
| Msa1215140 | AT4G38320.1 | 43.164 | 373 | 170 | 8 | 18 | 352 | 6 | 374 | 2.21e-91 | 279 |
| Msa1215140 | AT2G24150.2 | 51.295 | 193 | 94 | 0 | 165 | 357 | 54 | 246 | 1.73e-69 | 219 |
| Msa1215140 | AT2G40710.1 | 53.763 | 93 | 43 | 0 | 271 | 363 | 1 | 93 | 3.89e-29 | 108 |
| Msa1215140 | AT4G38290.1 | 59.459 | 74 | 29 | 1 | 291 | 363 | 35 | 108 | 1.89e-25 | 99.4 |
Find 104 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAAATATTTCATATTT+TGG | 0.119405 | 8_1:+76404964 | Msa1215140:CDS |
| TGCACCAACTGCAGCATTTA+AGG | 0.156919 | 8_1:-76402536 | None:intergenic |
| GTTGGATTTATTCTGTTTCT+TGG | 0.171486 | 8_1:+76403159 | Msa1215140:CDS |
| TTCATGCTTGTGTTGCAAAT+TGG | 0.232497 | 8_1:+76404807 | Msa1215140:CDS |
| TGGCCATTCTTTGTCTTCTT+AGG | 0.247470 | 8_1:+76404470 | Msa1215140:CDS |
| CAACCAGGCCTCCATCTTTC+CGG | 0.258607 | 8_1:-76404920 | None:intergenic |
| TCAGCCATCATAAATTAGTT+TGG | 0.266724 | 8_1:+76402450 | None:intergenic |
| GTACATAGGTCTATCTCTTC+AGG | 0.282931 | 8_1:+76404167 | Msa1215140:intron |
| CCTTGCTATAACAAATTCTA+AGG | 0.299308 | 8_1:-76404447 | None:intergenic |
| GTGTGACAAGGCTTAAATTA+AGG | 0.306890 | 8_1:+76405054 | Msa1215140:exon |
| AACACAAACAACCTTTGATT+TGG | 0.307947 | 8_1:+76402689 | Msa1215140:five_prime_UTR |
| ATGGCATTGTCTTACTTGAT+AGG | 0.313226 | 8_1:+76404872 | Msa1215140:CDS |
| CACAATAGTTCATCTCTGTT+TGG | 0.326565 | 8_1:-76402738 | None:intergenic |
| CACATGAGGCTTCATCAAAT+TGG | 0.331471 | 8_1:-76403193 | None:intergenic |
| TTGGATTTATTCTGTTTCTT+GGG | 0.332306 | 8_1:+76403160 | Msa1215140:CDS |
| AATCTATTCTTAACAGAAAC+AGG | 0.333630 | 8_1:-76404562 | None:intergenic |
| CTAGAATGGCGTGACACTTT+TGG | 0.338813 | 8_1:+76405031 | Msa1215140:CDS |
| AGCTATGTTGTTCTGTTCAA+TGG | 0.349396 | 8_1:+76404760 | Msa1215140:CDS |
| TTCTGATAGCATCAAAGTTC+TGG | 0.354226 | 8_1:+76404205 | Msa1215140:CDS |
| TCGAAATGCGCGGTGTTTAC+CGG | 0.364215 | 8_1:-76404738 | None:intergenic |
| CGACATCTTTATATTATCCT+TGG | 0.366302 | 8_1:-76402830 | None:intergenic |
| CAGCCATCATAAATTAGTTT+GGG | 0.367155 | 8_1:+76402451 | Msa1215140:five_prime_UTR |
| TCATGCTTGTGTTGCAAATT+GGG | 0.369516 | 8_1:+76404808 | Msa1215140:CDS |
| TCATTATCCTTCATATAATT+CGG | 0.373033 | 8_1:-76402910 | None:intergenic |
| CCATTGCCAATGGTAATTGA+TGG | 0.375582 | 8_1:-76404415 | None:intergenic |
| ATAATGAAACTTTGAATGTT+TGG | 0.388241 | 8_1:+76403001 | Msa1215140:CDS |
| AGCTTCTTTCAAAGGCCAAT+TGG | 0.392420 | 8_1:-76402956 | None:intergenic |
| GCACCAACTGCAGCATTTAA+GGG | 0.425405 | 8_1:-76402535 | None:intergenic |
| GTTCTATGTGACGCGGATAC+CGG | 0.430826 | 8_1:+76404901 | Msa1215140:CDS |
| CTTTCTTCAGTCTCTTTCGT+TGG | 0.437703 | 8_1:+76402977 | Msa1215140:CDS |
| CCTGGTTGGTTTGATTTAGC+AGG | 0.442111 | 8_1:+76404935 | Msa1215140:CDS |
| TCTGTTTCTTGGGTTGACCT+TGG | 0.451875 | 8_1:+76403170 | Msa1215140:CDS |
| TACGTTATTACAGAGCCAAT+TGG | 0.471460 | 8_1:+76402941 | Msa1215140:CDS |
| ACACTCTCCTCCGTAAGGTT+TGG | 0.472006 | 8_1:-76402510 | None:intergenic |
| GCTATGTTGTTCTGTTCAAT+GGG | 0.476457 | 8_1:+76404761 | Msa1215140:CDS |
| CCATTCTTTGTCTTCTTAGG+TGG | 0.483745 | 8_1:+76404473 | Msa1215140:CDS |
| TAGTCCCATGGCTGTAATAC+CGG | 0.489415 | 8_1:-76404678 | None:intergenic |
| CTACACTTAAAATGCTAGAA+TGG | 0.493476 | 8_1:+76405017 | Msa1215140:CDS |
| CAGAAACAGGTTTAAGTCAT+GGG | 0.494110 | 8_1:-76404549 | None:intergenic |
| AAGGTTTGGCACTATGTATG+TGG | 0.496101 | 8_1:-76402496 | None:intergenic |
| CGGAAAGATGGAGGCCTGGT+TGG | 0.498832 | 8_1:+76404921 | Msa1215140:CDS |
| CTGAAGAAAGCTTCTTTCAA+AGG | 0.500853 | 8_1:-76402964 | None:intergenic |
| AGGTTTGGCACTATGTATGT+GGG | 0.502161 | 8_1:-76402495 | None:intergenic |
| ATCTCTTACAACAATTTACA+AGG | 0.502630 | 8_1:+76403220 | Msa1215140:CDS |
| TGGCATTGTCTTACTTGATA+GGG | 0.509976 | 8_1:+76404873 | Msa1215140:CDS |
| ACAGAAACAGGTTTAAGTCA+TGG | 0.515069 | 8_1:-76404550 | None:intergenic |
| TTTAAACCATCAATTACCAT+TGG | 0.515618 | 8_1:+76404409 | Msa1215140:CDS |
| CTTTCCCCATCACTTTCTAC+CGG | 0.516838 | 8_1:+76404719 | Msa1215140:CDS |
| GGTGGCAAATGCTGCTAGAG+AGG | 0.518257 | 8_1:-76404511 | None:intergenic |
| CTGTTAAGAATAGATTATGT+CGG | 0.524523 | 8_1:+76404569 | Msa1215140:CDS |
| TGGGGAAAGCAATGTTACTA+TGG | 0.530611 | 8_1:-76404705 | None:intergenic |
| ATACATAGTGCCAAACCTTA+CGG | 0.534222 | 8_1:+76402500 | Msa1215140:five_prime_UTR |
| AGACCCAAACTAATTTATGA+TGG | 0.535015 | 8_1:-76402454 | None:intergenic |
| TGACGCGGATACCGGAAAGA+TGG | 0.537670 | 8_1:+76404909 | Msa1215140:CDS |
| CCTTAGAATTTGTTATAGCA+AGG | 0.538068 | 8_1:+76404447 | Msa1215140:CDS |
| GTTTACCGGTAGAAAGTGAT+GGG | 0.539453 | 8_1:-76404724 | None:intergenic |
| ATTTCTCTGACTTGGTTGTG+TGG | 0.539970 | 8_1:-76402593 | None:intergenic |
| CCATCAATTACCATTGGCAA+TGG | 0.541784 | 8_1:+76404415 | Msa1215140:CDS |
| CCACCTAAGAAGACAAAGAA+TGG | 0.542364 | 8_1:-76404473 | None:intergenic |
| GAGCATATATTTCTCTGACT+TGG | 0.546616 | 8_1:-76402601 | None:intergenic |
| ATATAAAGATGTCGCATGAT+CGG | 0.549561 | 8_1:+76402839 | Msa1215140:CDS |
| AGGAAAACATAGTAAATCTG+AGG | 0.556599 | 8_1:-76404623 | None:intergenic |
| ATCAAACAAAACCAAATCAA+AGG | 0.558711 | 8_1:-76402700 | None:intergenic |
| CATGCTTGTGTTGCAAATTG+GGG | 0.564814 | 8_1:+76404809 | Msa1215140:CDS |
| TGTTTACCGGTAGAAAGTGA+TGG | 0.568335 | 8_1:-76404725 | None:intergenic |
| ATACCGGAAAGATGGAGGCC+TGG | 0.568351 | 8_1:+76404917 | Msa1215140:CDS |
| GCAACACAAGCATGAACTGC+AGG | 0.575233 | 8_1:-76404800 | None:intergenic |
| CTTGGACTGTGTAAAAGACA+AGG | 0.577522 | 8_1:-76402812 | None:intergenic |
| GGGACACACTCTCCTCCGTA+AGG | 0.578007 | 8_1:-76402515 | None:intergenic |
| GATTCAACTTCCATTGCCAA+TGG | 0.580416 | 8_1:-76404425 | None:intergenic |
| TGTTGATGATGGAGTAATGA+GGG | 0.582660 | 8_1:-76402565 | None:intergenic |
| GTGTGGCTAAATGTTGATGA+TGG | 0.583455 | 8_1:-76402576 | None:intergenic |
| CATGGGAGTGACATGAAAAG+AGG | 0.583926 | 8_1:-76404532 | None:intergenic |
| GGAGCTACCGAATTATATGA+AGG | 0.585057 | 8_1:+76402903 | Msa1215140:CDS |
| TGGCAACTCATCTACCTAGC+CGG | 0.586984 | 8_1:+76404659 | Msa1215140:CDS |
| TGTGTTGTCAAGAGGAACAA+AGG | 0.596024 | 8_1:+76402769 | Msa1215140:CDS |
| GGTTTGGCACTATGTATGTG+GGG | 0.597181 | 8_1:-76402494 | None:intergenic |
| GTTGCCAATGAGGTTGACAT+AGG | 0.600058 | 8_1:-76404643 | None:intergenic |
| CCATGGCTGTAATACCGGCT+AGG | 0.606682 | 8_1:-76404673 | None:intergenic |
| GGAAAACATAGTAAATCTGA+GGG | 0.611187 | 8_1:-76404622 | None:intergenic |
| TGTAAGAGATCCACCACATG+AGG | 0.615952 | 8_1:-76403207 | None:intergenic |
| TAGAATTTGTTATAGCAAGG+TGG | 0.617513 | 8_1:+76404450 | Msa1215140:CDS |
| AGGTAGATGAGTTGCCAATG+AGG | 0.623505 | 8_1:-76404653 | None:intergenic |
| ATGTCGCATGATCGGAACAA+AGG | 0.623538 | 8_1:+76402847 | Msa1215140:CDS |
| CGCGGATACCGGAAAGATGG+AGG | 0.624928 | 8_1:+76404912 | Msa1215140:CDS |
| CCTGCTAAATCAAACCAACC+AGG | 0.625235 | 8_1:-76404935 | None:intergenic |
| TGTCCCTTAAATGCTGCAGT+TGG | 0.633833 | 8_1:+76402532 | Msa1215140:five_prime_UTR |
| AGACAAATTGTGTTGTCAAG+AGG | 0.634394 | 8_1:+76402761 | Msa1215140:CDS |
| TTTGATGAAGCCTCATGTGG+TGG | 0.642283 | 8_1:+76403197 | Msa1215140:CDS |
| ACTAGCATATGAATGTGTCA+TGG | 0.642425 | 8_1:+76404853 | Msa1215140:CDS |
| ACAACATAGCTCGAAATGCG+CGG | 0.643746 | 8_1:-76404748 | None:intergenic |
| CTAGCCGGTATTACAGCCAT+GGG | 0.645941 | 8_1:+76404674 | Msa1215140:CDS |
| GTAAATCTGAGGGAAGAATG+AGG | 0.646981 | 8_1:-76404612 | None:intergenic |
| GGGAGTGACATGAAAAGAGG+TGG | 0.647977 | 8_1:-76404529 | None:intergenic |
| AGGCTTCATCAAATTGGCCA+AGG | 0.660901 | 8_1:-76403187 | None:intergenic |
| TACTATGGTGAATAGTCCCA+TGG | 0.663061 | 8_1:-76404690 | None:intergenic |
| CATAGGTCTATCTCTTCAGG+TGG | 0.665575 | 8_1:+76404170 | Msa1215140:intron |
| CAATTTGATGAAGCCTCATG+TGG | 0.668778 | 8_1:+76403194 | Msa1215140:CDS |
| GGACTTTGTTCTATGTGACG+CGG | 0.692634 | 8_1:+76404894 | Msa1215140:CDS |
| ATGTTGATGATGGAGTAATG+AGG | 0.700787 | 8_1:-76402566 | None:intergenic |
| GTTGTCAAGAGGAACAAAGG+AGG | 0.716326 | 8_1:+76402772 | Msa1215140:CDS |
| CATAGTGCCAAACCTTACGG+AGG | 0.733527 | 8_1:+76402503 | Msa1215140:five_prime_UTR |
| TTTACCGGTAGAAAGTGATG+GGG | 0.740060 | 8_1:-76404723 | None:intergenic |
| GCTAGTGTAACATTGCGTCG+AGG | 0.746159 | 8_1:-76404836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATATTAGTCAATT+TGG | + | chr8_1:76404057-76404076 | Msa1215140:intron | 10.0% |
| !! | CTAAAAATTGTATGTTTATA+GGG | + | chr8_1:76403495-76403514 | Msa1215140:intron | 15.0% |
| !!! | AAATTTTATTAGCAGAAATT+CGG | + | chr8_1:76403700-76403719 | Msa1215140:intron | 15.0% |
| !!! | TCATCAAATATTTCATATTT+TGG | + | chr8_1:76404964-76404983 | Msa1215140:CDS | 15.0% |
| !! | TTATTCAAAAATGAAGATGA+TGG | - | chr8_1:76402626-76402645 | None:intergenic | 20.0% |
| !! | TCATTATCCTTCATATAATT+CGG | - | chr8_1:76402913-76402932 | None:intergenic | 20.0% |
| !! | ATAATGAAACTTTGAATGTT+TGG | + | chr8_1:76403001-76403020 | Msa1215140:CDS | 20.0% |
| !! | GCTAAAAATTGTATGTTTAT+AGG | + | chr8_1:76403494-76403513 | Msa1215140:intron | 20.0% |
| !! | TTCGGAAAACTAAATAAATT+TGG | + | chr8_1:76403718-76403737 | Msa1215140:intron | 20.0% |
| !!! | ATTGGTTTAAATTCAAGTTT+AGG | + | chr8_1:76403888-76403907 | Msa1215140:intron | 20.0% |
| !!! | CATATTATCTTTTTGTACAT+AGG | + | chr8_1:76404153-76404172 | Msa1215140:intron | 20.0% |
| !!! | AATATTTCATATTTTGGTTG+TGG | + | chr8_1:76404970-76404989 | Msa1215140:CDS | 20.0% |
| ! | ATCAAACAAAACCAAATCAA+AGG | - | chr8_1:76402703-76402722 | None:intergenic | 25.0% |
| !!! | TGATTTGGTTTTGTTTGATT+TGG | + | chr8_1:76402704-76402723 | Msa1215140:five_prime_UTR | 25.0% |
| !! | TTGGATTTATTCTGTTTCTT+GGG | + | chr8_1:76403160-76403179 | Msa1215140:CDS | 25.0% |
| ! | ATCTCTTACAACAATTTACA+AGG | + | chr8_1:76403220-76403239 | Msa1215140:CDS | 25.0% |
| ! | TTTATGTGTTTATATGTGAG+AGG | + | chr8_1:76403277-76403296 | Msa1215140:intron | 25.0% |
| !!! | AACATACAATTTTTAGCACT+AGG | - | chr8_1:76403491-76403510 | None:intergenic | 25.0% |
| ! | TAACAATAACAACTAGATCT+TGG | + | chr8_1:76403862-76403881 | Msa1215140:intron | 25.0% |
| ! | AACAATAACAACTAGATCTT+GGG | + | chr8_1:76403863-76403882 | Msa1215140:intron | 25.0% |
| ! | CATAGAAACTTTAGTACTAT+TGG | - | chr8_1:76403934-76403953 | None:intergenic | 25.0% |
| !! | ACATGTAATTAACTTGAACA+AGG | + | chr8_1:76403967-76403986 | Msa1215140:intron | 25.0% |
| !! | CATGTAATTAACTTGAACAA+GGG | + | chr8_1:76403968-76403987 | Msa1215140:intron | 25.0% |
| ! | ACAAAACTAGAAGCTAATAT+TGG | - | chr8_1:76404027-76404046 | None:intergenic | 25.0% |
| ! | TATATTAGTCAATTTGGATG+AGG | + | chr8_1:76404063-76404082 | Msa1215140:intron | 25.0% |
| !! | TTTGGATGAGGATTTTTATT+AGG | + | chr8_1:76404075-76404094 | Msa1215140:intron | 25.0% |
| ! | TTAATAAATTGAGTTACCGA+CGG | + | chr8_1:76404254-76404273 | Msa1215140:intron | 25.0% |
| !!! | AGAAGTCGATTTCATTTTTT+CGG | - | chr8_1:76404290-76404309 | None:intergenic | 25.0% |
| ! | TTTAAACCATCAATTACCAT+TGG | + | chr8_1:76404409-76404428 | Msa1215140:CDS | 25.0% |
| ! | AATCTATTCTTAACAGAAAC+AGG | - | chr8_1:76404565-76404584 | None:intergenic | 25.0% |
| ! | CTGTTAAGAATAGATTATGT+CGG | + | chr8_1:76404569-76404588 | Msa1215140:CDS | 25.0% |
| ! | CAGCCATCATAAATTAGTTT+GGG | + | chr8_1:76402451-76402470 | Msa1215140:five_prime_UTR | 30.0% |
| AGACCCAAACTAATTTATGA+TGG | - | chr8_1:76402457-76402476 | None:intergenic | 30.0% | |
| AACACAAACAACCTTTGATT+TGG | + | chr8_1:76402689-76402708 | Msa1215140:five_prime_UTR | 30.0% | |
| CGACATCTTTATATTATCCT+TGG | - | chr8_1:76402833-76402852 | None:intergenic | 30.0% | |
| ATATAAAGATGTCGCATGAT+CGG | + | chr8_1:76402839-76402858 | Msa1215140:CDS | 30.0% | |
| !!! | TTTTTGGTTTTCATTCTGTC+TGG | + | chr8_1:76403070-76403089 | Msa1215140:intron | 30.0% |
| ATCCAACTAAATGTCTGAAA+AGG | - | chr8_1:76403146-76403165 | None:intergenic | 30.0% | |
| ! | GTTGGATTTATTCTGTTTCT+TGG | + | chr8_1:76403159-76403178 | Msa1215140:CDS | 30.0% |
| AAAGAATAAGAGAACCAATC+TGG | + | chr8_1:76403326-76403345 | Msa1215140:intron | 30.0% | |
| AAGCAAACATGACATGAAAA+TGG | + | chr8_1:76403784-76403803 | Msa1215140:intron | 30.0% | |
| ATGACATGAAAATGGTTTCT+TGG | + | chr8_1:76403792-76403811 | Msa1215140:intron | 30.0% | |
| ACAATAACAACTAGATCTTG+GGG | + | chr8_1:76403864-76403883 | Msa1215140:intron | 30.0% | |
| GCAAAATTAGTTGAGAATTG+TGG | - | chr8_1:76404134-76404153 | None:intergenic | 30.0% | |
| TGACAATGTAAGAATTTGCA+GGG | + | chr8_1:76404368-76404387 | Msa1215140:intron | 30.0% | |
| ! | CCTTGCTATAACAAATTCTA+AGG | - | chr8_1:76404450-76404469 | None:intergenic | 30.0% |
| !! | CCTTAGAATTTGTTATAGCA+AGG | + | chr8_1:76404447-76404466 | Msa1215140:CDS | 30.0% |
| !! | TAGAATTTGTTATAGCAAGG+TGG | + | chr8_1:76404450-76404469 | Msa1215140:CDS | 30.0% |
| GGAAAACATAGTAAATCTGA+GGG | - | chr8_1:76404625-76404644 | None:intergenic | 30.0% | |
| AGGAAAACATAGTAAATCTG+AGG | - | chr8_1:76404626-76404645 | None:intergenic | 30.0% | |
| !!! | TTTCATATTTTGGTTGTGGT+TGG | + | chr8_1:76404974-76404993 | Msa1215140:CDS | 30.0% |
| CTACACTTAAAATGCTAGAA+TGG | + | chr8_1:76405017-76405036 | Msa1215140:CDS | 30.0% | |
| ATACATAGTGCCAAACCTTA+CGG | + | chr8_1:76402500-76402519 | Msa1215140:five_prime_UTR | 35.0% | |
| !! | TGTTGATGATGGAGTAATGA+GGG | - | chr8_1:76402568-76402587 | None:intergenic | 35.0% |
| !! | ATGTTGATGATGGAGTAATG+AGG | - | chr8_1:76402569-76402588 | None:intergenic | 35.0% |
| GAGCATATATTTCTCTGACT+TGG | - | chr8_1:76402604-76402623 | None:intergenic | 35.0% | |
| CACAATAGTTCATCTCTGTT+TGG | - | chr8_1:76402741-76402760 | None:intergenic | 35.0% | |
| AGACAAATTGTGTTGTCAAG+AGG | + | chr8_1:76402761-76402780 | Msa1215140:CDS | 35.0% | |
| ! | TTACGCTCTTGTGTCTTTTA+TGG | + | chr8_1:76402882-76402901 | Msa1215140:CDS | 35.0% |
| TACGTTATTACAGAGCCAAT+TGG | + | chr8_1:76402941-76402960 | Msa1215140:CDS | 35.0% | |
| CTGAAGAAAGCTTCTTTCAA+AGG | - | chr8_1:76402967-76402986 | None:intergenic | 35.0% | |
| !! | TCTGTCTGGTGTTTTTGATT+AGG | + | chr8_1:76403084-76403103 | Msa1215140:intron | 35.0% |
| ! | TGCCTTTTCAGACATTTAGT+TGG | + | chr8_1:76403141-76403160 | Msa1215140:intron | 35.0% |
| ! | ATGCTTTCTGAGAAATGTTG+AGG | - | chr8_1:76403354-76403373 | None:intergenic | 35.0% |
| ACACCTTATACAATACACTC+TGG | + | chr8_1:76403465-76403484 | Msa1215140:intron | 35.0% | |
| !!! | TATTGGTTTTGTCAACAGGA+CGG | - | chr8_1:76403917-76403936 | None:intergenic | 35.0% |
| !!! | GTACTATTGGTTTTGTCAAC+AGG | - | chr8_1:76403921-76403940 | None:intergenic | 35.0% |
| !! | AGTTTCTATGCAGTTTGTTG+TGG | + | chr8_1:76403944-76403963 | Msa1215140:intron | 35.0% |
| AACTGTCTAGCTAATAGCAT+AGG | + | chr8_1:76404100-76404119 | Msa1215140:intron | 35.0% | |
| ACTGTCTAGCTAATAGCATA+GGG | + | chr8_1:76404101-76404120 | Msa1215140:intron | 35.0% | |
| TTCTGATAGCATCAAAGTTC+TGG | + | chr8_1:76404205-76404224 | Msa1215140:CDS | 35.0% | |
| AACGCTTAGCAACGAAATTA+TGG | + | chr8_1:76404325-76404344 | Msa1215140:intron | 35.0% | |
| CTTAGCAACGAAATTATGGA+CGG | + | chr8_1:76404329-76404348 | Msa1215140:intron | 35.0% | |
| CTGACAATGTAAGAATTTGC+AGG | + | chr8_1:76404367-76404386 | Msa1215140:intron | 35.0% | |
| ATGTAAGAATTTGCAGGGAA+CGG | + | chr8_1:76404373-76404392 | Msa1215140:intron | 35.0% | |
| CAGAAACAGGTTTAAGTCAT+GGG | - | chr8_1:76404552-76404571 | None:intergenic | 35.0% | |
| ACAGAAACAGGTTTAAGTCA+TGG | - | chr8_1:76404553-76404572 | None:intergenic | 35.0% | |
| ! | TTTTCCTATGTCAACCTCAT+TGG | + | chr8_1:76404639-76404658 | Msa1215140:CDS | 35.0% |
| AGCTATGTTGTTCTGTTCAA+TGG | + | chr8_1:76404760-76404779 | Msa1215140:CDS | 35.0% | |
| GCTATGTTGTTCTGTTCAAT+GGG | + | chr8_1:76404761-76404780 | Msa1215140:CDS | 35.0% | |
| ! | TTCTGTTCAATGGGACTTTT+CGG | + | chr8_1:76404770-76404789 | Msa1215140:CDS | 35.0% |
| TTCATGCTTGTGTTGCAAAT+TGG | + | chr8_1:76404807-76404826 | Msa1215140:CDS | 35.0% | |
| TCATGCTTGTGTTGCAAATT+GGG | + | chr8_1:76404808-76404827 | Msa1215140:CDS | 35.0% | |
| ACTAGCATATGAATGTGTCA+TGG | + | chr8_1:76404853-76404872 | Msa1215140:CDS | 35.0% | |
| ATGGCATTGTCTTACTTGAT+AGG | + | chr8_1:76404872-76404891 | Msa1215140:CDS | 35.0% | |
| TGGCATTGTCTTACTTGATA+GGG | + | chr8_1:76404873-76404892 | Msa1215140:CDS | 35.0% | |
| GTGTGACAAGGCTTAAATTA+AGG | + | chr8_1:76405054-76405073 | Msa1215140:exon | 35.0% | |
| AGGTTTGGCACTATGTATGT+GGG | - | chr8_1:76402498-76402517 | None:intergenic | 40.0% | |
| AAGGTTTGGCACTATGTATG+TGG | - | chr8_1:76402499-76402518 | None:intergenic | 40.0% | |
| ! | GTGTGGCTAAATGTTGATGA+TGG | - | chr8_1:76402579-76402598 | None:intergenic | 40.0% |
| !! | ATTTCTCTGACTTGGTTGTG+TGG | - | chr8_1:76402596-76402615 | None:intergenic | 40.0% |
| TGTGTTGTCAAGAGGAACAA+AGG | + | chr8_1:76402769-76402788 | Msa1215140:CDS | 40.0% | |
| CTTGGACTGTGTAAAAGACA+AGG | - | chr8_1:76402815-76402834 | None:intergenic | 40.0% | |
| ! | CTTGTCTTTTACACAGTCCA+AGG | + | chr8_1:76402813-76402832 | Msa1215140:CDS | 40.0% |
| GGAGCTACCGAATTATATGA+AGG | + | chr8_1:76402903-76402922 | Msa1215140:CDS | 40.0% | |
| AGCTTCTTTCAAAGGCCAAT+TGG | - | chr8_1:76402959-76402978 | None:intergenic | 40.0% | |
| CTTTCTTCAGTCTCTTTCGT+TGG | + | chr8_1:76402977-76402996 | Msa1215140:CDS | 40.0% | |
| CACATGAGGCTTCATCAAAT+TGG | - | chr8_1:76403196-76403215 | None:intergenic | 40.0% | |
| CAATTTGATGAAGCCTCATG+TGG | + | chr8_1:76403194-76403213 | Msa1215140:CDS | 40.0% | |
| GAAATGTTGAGGAACCAGAT+TGG | - | chr8_1:76403343-76403362 | None:intergenic | 40.0% | |
| AGGCCAGAGTGTATTGTATA+AGG | - | chr8_1:76403471-76403490 | None:intergenic | 40.0% | |
| ACAACTAGATCTTGGGGAAT+TGG | + | chr8_1:76403870-76403889 | Msa1215140:intron | 40.0% | |
| GTACATAGGTCTATCTCTTC+AGG | + | chr8_1:76404167-76404186 | Msa1215140:intron | 40.0% | |
| TTTCGGTCTCTAATTTCCGT+CGG | - | chr8_1:76404273-76404292 | None:intergenic | 40.0% | |
| CCATTGCCAATGGTAATTGA+TGG | - | chr8_1:76404418-76404437 | None:intergenic | 40.0% | |
| CCATCAATTACCATTGGCAA+TGG | + | chr8_1:76404415-76404434 | Msa1215140:CDS | 40.0% | |
| GATTCAACTTCCATTGCCAA+TGG | - | chr8_1:76404428-76404447 | None:intergenic | 40.0% | |
| TGGCCATTCTTTGTCTTCTT+AGG | + | chr8_1:76404470-76404489 | Msa1215140:CDS | 40.0% | |
| CCACCTAAGAAGACAAAGAA+TGG | - | chr8_1:76404476-76404495 | None:intergenic | 40.0% | |
| CCATTCTTTGTCTTCTTAGG+TGG | + | chr8_1:76404473-76404492 | Msa1215140:CDS | 40.0% | |
| GTAAATCTGAGGGAAGAATG+AGG | - | chr8_1:76404615-76404634 | None:intergenic | 40.0% | |
| TACTATGGTGAATAGTCCCA+TGG | - | chr8_1:76404693-76404712 | None:intergenic | 40.0% | |
| TGGGGAAAGCAATGTTACTA+TGG | - | chr8_1:76404708-76404727 | None:intergenic | 40.0% | |
| TTTACCGGTAGAAAGTGATG+GGG | - | chr8_1:76404726-76404745 | None:intergenic | 40.0% | |
| GTTTACCGGTAGAAAGTGAT+GGG | - | chr8_1:76404727-76404746 | None:intergenic | 40.0% | |
| TGTTTACCGGTAGAAAGTGA+TGG | - | chr8_1:76404728-76404747 | None:intergenic | 40.0% | |
| CATGCTTGTGTTGCAAATTG+GGG | + | chr8_1:76404809-76404828 | Msa1215140:CDS | 40.0% | |
| ! | TAGAATGGCGTGACACTTTT+GGG | + | chr8_1:76405032-76405051 | Msa1215140:CDS | 40.0% |
| GGTTTGGCACTATGTATGTG+GGG | - | chr8_1:76402497-76402516 | None:intergenic | 45.0% | |
| TGTCCCTTAAATGCTGCAGT+TGG | + | chr8_1:76402532-76402551 | Msa1215140:five_prime_UTR | 45.0% | |
| GCACCAACTGCAGCATTTAA+GGG | - | chr8_1:76402538-76402557 | None:intergenic | 45.0% | |
| TGCACCAACTGCAGCATTTA+AGG | - | chr8_1:76402539-76402558 | None:intergenic | 45.0% | |
| GTTGTCAAGAGGAACAAAGG+AGG | + | chr8_1:76402772-76402791 | Msa1215140:CDS | 45.0% | |
| ATGTCGCATGATCGGAACAA+AGG | + | chr8_1:76402847-76402866 | Msa1215140:CDS | 45.0% | |
| !! | TCTGTTTCTTGGGTTGACCT+TGG | + | chr8_1:76403170-76403189 | Msa1215140:CDS | 45.0% |
| AGGCTTCATCAAATTGGCCA+AGG | - | chr8_1:76403190-76403209 | None:intergenic | 45.0% | |
| TTTGATGAAGCCTCATGTGG+TGG | + | chr8_1:76403197-76403216 | Msa1215140:CDS | 45.0% | |
| TGTAAGAGATCCACCACATG+AGG | - | chr8_1:76403210-76403229 | None:intergenic | 45.0% | |
| CATAGGTCTATCTCTTCAGG+TGG | + | chr8_1:76404170-76404189 | Msa1215140:intron | 45.0% | |
| CATGGGAGTGACATGAAAAG+AGG | - | chr8_1:76404535-76404554 | None:intergenic | 45.0% | |
| GTTGCCAATGAGGTTGACAT+AGG | - | chr8_1:76404646-76404665 | None:intergenic | 45.0% | |
| AGGTAGATGAGTTGCCAATG+AGG | - | chr8_1:76404656-76404675 | None:intergenic | 45.0% | |
| TAGTCCCATGGCTGTAATAC+CGG | - | chr8_1:76404681-76404700 | None:intergenic | 45.0% | |
| CTTTCCCCATCACTTTCTAC+CGG | + | chr8_1:76404719-76404738 | Msa1215140:CDS | 45.0% | |
| ACAACATAGCTCGAAATGCG+CGG | - | chr8_1:76404751-76404770 | None:intergenic | 45.0% | |
| GGACTTTGTTCTATGTGACG+CGG | + | chr8_1:76404894-76404913 | Msa1215140:CDS | 45.0% | |
| CCTGCTAAATCAAACCAACC+AGG | - | chr8_1:76404938-76404957 | None:intergenic | 45.0% | |
| !! | CCTGGTTGGTTTGATTTAGC+AGG | + | chr8_1:76404935-76404954 | Msa1215140:CDS | 45.0% |
| ! | CTAGAATGGCGTGACACTTT+TGG | + | chr8_1:76405031-76405050 | Msa1215140:CDS | 45.0% |
| !! | TGACACTTTTGGGTGTGACA+AGG | + | chr8_1:76405042-76405061 | Msa1215140:CDS | 45.0% |
| !!! | TATCTATTTTTTTTTTTTTT+TGG | + | chr8_1:76403054-76403073 | Msa1215140:intron | 5.0% |
| CATAGTGCCAAACCTTACGG+AGG | + | chr8_1:76402503-76402522 | Msa1215140:five_prime_UTR | 50.0% | |
| ACACTCTCCTCCGTAAGGTT+TGG | - | chr8_1:76402513-76402532 | None:intergenic | 50.0% | |
| ATATGCCAGCTGTTACCTGC+AGG | + | chr8_1:76403372-76403391 | Msa1215140:intron | 50.0% | |
| AATGACCTGCAGGTAACAGC+TGG | - | chr8_1:76403380-76403399 | None:intergenic | 50.0% | |
| AGCTGTTACCTGCAGGTCAT+TGG | + | chr8_1:76403379-76403398 | Msa1215140:intron | 50.0% | |
| ACACAACACCAATGACCTGC+AGG | - | chr8_1:76403390-76403409 | None:intergenic | 50.0% | |
| GGGAGTGACATGAAAAGAGG+TGG | - | chr8_1:76404532-76404551 | None:intergenic | 50.0% | |
| TGGCAACTCATCTACCTAGC+CGG | + | chr8_1:76404659-76404678 | Msa1215140:CDS | 50.0% | |
| CTAGCCGGTATTACAGCCAT+GGG | + | chr8_1:76404674-76404693 | Msa1215140:CDS | 50.0% | |
| TCGAAATGCGCGGTGTTTAC+CGG | - | chr8_1:76404741-76404760 | None:intergenic | 50.0% | |
| GCAACACAAGCATGAACTGC+AGG | - | chr8_1:76404803-76404822 | None:intergenic | 50.0% | |
| GCTAGTGTAACATTGCGTCG+AGG | - | chr8_1:76404839-76404858 | None:intergenic | 50.0% | |
| GTTCTATGTGACGCGGATAC+CGG | + | chr8_1:76404901-76404920 | Msa1215140:CDS | 50.0% | |
| GGTGGCAAATGCTGCTAGAG+AGG | - | chr8_1:76404514-76404533 | None:intergenic | 55.0% | |
| ! | CCATGGCTGTAATACCGGCT+AGG | - | chr8_1:76404676-76404695 | None:intergenic | 55.0% |
| CCTAGCCGGTATTACAGCCA+TGG | + | chr8_1:76404673-76404692 | Msa1215140:CDS | 55.0% | |
| TGACGCGGATACCGGAAAGA+TGG | + | chr8_1:76404909-76404928 | Msa1215140:CDS | 55.0% | |
| ATACCGGAAAGATGGAGGCC+TGG | + | chr8_1:76404917-76404936 | Msa1215140:CDS | 55.0% | |
| CAACCAGGCCTCCATCTTTC+CGG | - | chr8_1:76404923-76404942 | None:intergenic | 55.0% | |
| GGGACACACTCTCCTCCGTA+AGG | - | chr8_1:76402518-76402537 | None:intergenic | 60.0% | |
| CGCGGATACCGGAAAGATGG+AGG | + | chr8_1:76404912-76404931 | Msa1215140:CDS | 60.0% | |
| CGGAAAGATGGAGGCCTGGT+TGG | + | chr8_1:76404921-76404940 | Msa1215140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 76402451 | 76405093 | 76402451 | ID=Msa1215140;Name=Msa1215140 |
| chr8_1 | mRNA | 76402451 | 76405093 | 76402451 | ID=Msa1215140-mRNA-1;Parent=Msa1215140;Name=Msa1215140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=297|1|1|1|1|1|4|24|366 |
| chr8_1 | exon | 76402451 | 76403025 | 76402451 | ID=Msa1215140-mRNA-1:exon:26218;Parent=Msa1215140-mRNA-1 |
| chr8_1 | exon | 76403152 | 76403241 | 76403152 | ID=Msa1215140-mRNA-1:exon:26219;Parent=Msa1215140-mRNA-1 |
| chr8_1 | exon | 76404175 | 76404226 | 76404175 | ID=Msa1215140-mRNA-1:exon:26220;Parent=Msa1215140-mRNA-1 |
| chr8_1 | exon | 76404389 | 76405093 | 76404389 | ID=Msa1215140-mRNA-1:exon:26221;Parent=Msa1215140-mRNA-1 |
| chr8_1 | five_prime_UTR | 76402451 | 76402747 | 76402451 | ID=Msa1215140-mRNA-1:five_prime_utr;Parent=Msa1215140-mRNA-1 |
| chr8_1 | CDS | 76402748 | 76403025 | 76402748 | ID=Msa1215140-mRNA-1:cds;Parent=Msa1215140-mRNA-1 |
| chr8_1 | CDS | 76403152 | 76403241 | 76403152 | ID=Msa1215140-mRNA-1:cds;Parent=Msa1215140-mRNA-1 |
| chr8_1 | CDS | 76404175 | 76404226 | 76404175 | ID=Msa1215140-mRNA-1:cds;Parent=Msa1215140-mRNA-1 |
| chr8_1 | CDS | 76404389 | 76405069 | 76404389 | ID=Msa1215140-mRNA-1:cds;Parent=Msa1215140-mRNA-1 |
| chr8_1 | three_prime_UTR | 76405070 | 76405093 | 76405070 | ID=Msa1215140-mRNA-1:three_prime_utr;Parent=Msa1215140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
