AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392410 MtrunA17_Chr3g0077581 97.035 371 7 3 1 368 1 370 0.0 732
Msa0392410 MtrunA17_Chr2g0285061 56.176 340 144 4 32 368 28 365 1.43e-129 375
Msa0392410 MtrunA17_Chr8g0380041 56.637 339 141 5 33 368 28 363 4.33e-127 369
Msa0392410 MtrunA17_Chr3g0086641 54.572 339 148 5 33 368 35 370 1.17e-124 363
Msa0392410 MtrunA17_Chr3g0077571 47.443 352 172 9 21 368 15 357 1.67e-106 317
Msa0392410 MtrunA17_Chr3g0131321 41.803 366 202 7 8 366 6 367 1.24e-96 292
Msa0392410 MtrunA17_Chr8g0380031 45.000 340 169 10 33 368 81 406 1.94e-90 277
Msa0392410 MtrunA17_Chr2g0284951 44.838 339 167 8 33 366 30 353 2.65e-87 268
Msa0392410 MtrunA17_Chr2g0284991 43.363 339 177 7 33 366 30 358 3.08e-86 266
Msa0392410 MtrunA17_Chr3g0085881 44.970 338 166 11 33 366 30 351 3.93e-85 262
Msa0392410 MtrunA17_Chr2g0284921 43.064 346 178 10 30 368 28 361 1.13e-84 261
Msa0392410 MtrunA17_Chr4g0017431 40.000 355 201 7 19 368 16 363 4.72e-84 259
Msa0392410 MtrunA17_Chr2g0284941 43.068 339 157 8 33 366 30 337 3.22e-82 254
Msa0392410 MtrunA17_Chr2g0285001 41.935 341 180 9 33 366 30 359 2.48e-80 250
Msa0392410 MtrunA17_Chr2g0294311 40.000 350 187 11 32 365 28 370 1.17e-69 223
Msa0392410 MtrunA17_Chr4g0068441 40.058 342 190 11 32 365 31 365 1.99e-69 222
Msa0392410 MtrunA17_Chr2g0294301 40.476 336 185 12 38 365 37 365 4.03e-66 213
Msa0392410 MtrunA17_Chr7g0275021 35.150 367 227 10 7 368 6 366 1.08e-65 212
Msa0392410 MtrunA17_Chr5g0434621 40.248 323 176 12 38 353 27 339 1.83e-64 209
Msa0392410 MtrunA17_Chr1g0182811 38.529 340 189 11 37 365 34 364 1.28e-63 207
Msa0392410 MtrunA17_Chr8g0374101 39.349 338 192 10 38 365 39 373 3.15e-62 204
Msa0392410 MtrunA17_Chr5g0396511 35.693 339 201 10 38 367 48 378 2.80e-61 201
Msa0392410 MtrunA17_Chr7g0275011 35.342 365 219 9 9 368 14 366 1.09e-60 199
Msa0392410 MtrunA17_Chr1g0156911 33.967 368 218 11 1 356 1 355 2.13e-59 196
Msa0392410 MtrunA17_Chr1g0189931 34.054 370 228 11 4 367 5 364 2.65e-59 196
Msa0392410 MtrunA17_Chr1g0189901 36.795 337 202 10 37 367 32 363 7.03e-59 194
Msa0392410 MtrunA17_Chr3g0092131 40.063 317 175 11 38 347 25 333 1.13e-58 194
Msa0392410 MtrunA17_Chr7g0274991 34.718 337 210 9 37 368 34 365 2.47e-58 193
Msa0392410 MtrunA17_Chr1g0156931 33.237 346 210 10 4 342 13 344 1.67e-57 191
Msa0392410 MtrunA17_Chr5g0444401 35.632 348 202 12 31 366 23 360 1.39e-55 186
Msa0392410 MtrunA17_Chr3g0099161 34.648 355 202 11 30 368 86 426 1.41e-55 187
Msa0392410 MtrunA17_Chr3g0099151 34.091 352 209 11 30 368 81 422 1.75e-55 187
Msa0392410 MtrunA17_Chr4g0008851 33.062 369 223 12 8 368 14 366 1.95e-55 186
Msa0392410 MtrunA17_Chr4g0060811 37.658 316 184 9 38 347 29 337 3.66e-55 185
Msa0392410 MtrunA17_Chr3g0142921 35.241 332 195 11 29 348 29 352 4.68e-55 184
Msa0392410 MtrunA17_Chr7g0275001 34.311 341 215 7 33 368 22 358 6.21e-55 184
Msa0392410 MtrunA17_Chr1g0156901 34.268 321 195 9 27 340 41 352 6.03e-54 182
Msa0392410 MtrunA17_Chr7g0215961 33.607 366 218 10 8 368 7 352 7.27e-54 181
Msa0392410 MtrunA17_Chr5g0438621 37.117 326 182 12 33 347 27 340 4.58e-53 179
Msa0392410 MtrunA17_Chr3g0142941 33.945 327 198 11 22 340 33 349 9.42e-53 179
Msa0392410 MtrunA17_Chr6g0457921 34.104 346 216 10 30 368 22 362 1.10e-52 178
Msa0392410 MtrunA17_Chr3g0099231 32.665 349 210 11 30 365 22 358 6.68e-52 177
Msa0392410 MtrunA17_Chr1g0156921 33.025 324 201 11 24 340 31 345 1.33e-51 176
Msa0392410 MtrunA17_Chr2g0320671 35.737 319 194 9 34 347 28 340 1.56e-51 175
Msa0392410 MtrunA17_Chr3g0085231 34.706 340 195 11 34 366 29 348 2.48e-51 174
Msa0392410 MtrunA17_Chr1g0189891 36.202 337 200 11 37 368 30 356 3.00e-51 174
Msa0392410 MtrunA17_Chr5g0405821 35.484 341 191 13 29 354 36 362 3.46e-51 174
Msa0392410 MtrunA17_Chr5g0405831 34.746 354 202 13 5 346 17 353 1.42e-50 173
Msa0392410 MtrunA17_Chr5g0420811 33.430 344 201 12 30 365 27 350 3.08e-50 171
Msa0392410 MtrunA17_Chr8g0341001 34.688 320 197 9 34 347 30 343 3.67e-49 169
Msa0392410 MtrunA17_Chr1g0156891 32.738 336 211 9 12 340 19 346 4.33e-49 169
Msa0392410 MtrunA17_Chr2g0330781 34.154 325 196 10 34 349 29 344 1.30e-48 167
Msa0392410 MtrunA17_Chr8g0371491 35.045 331 187 11 29 345 29 345 2.03e-48 167
Msa0392410 MtrunA17_Chr2g0283191 31.928 332 202 9 33 347 35 359 8.47e-48 166
Msa0392410 MtrunA17_Chr4g0027521 33.538 325 196 11 34 347 25 340 8.32e-47 162
Msa0392410 MtrunA17_Chr3g0105401 33.533 334 200 12 33 356 25 346 1.06e-45 160
Msa0392410 MtrunA17_Chr5g0438631 33.230 322 199 10 34 347 26 339 2.46e-45 159
Msa0392410 MtrunA17_Chr5g0438641 31.889 323 205 10 33 348 29 343 4.63e-44 155
Msa0392410 MtrunA17_Chr5g0432101 33.437 323 192 12 38 348 35 346 1.03e-43 155
Msa0392410 MtrunA17_Chr3g0120861 32.099 324 207 10 30 347 32 348 2.37e-43 154
Msa0392410 MtrunA17_Chr8g0371471 27.954 347 238 9 8 348 12 352 8.37e-42 150
Msa0392410 MtrunA17_Chr5g0437421 33.437 323 189 9 33 340 29 340 8.63e-42 149
Msa0392410 MtrunA17_Chr8g0370951 31.268 355 211 13 30 365 25 365 3.15e-41 148
Msa0392410 MtrunA17_Chr4g0046151 28.895 353 227 11 3 342 7 348 8.83e-41 147
Msa0392410 MtrunA17_Chr8g0349321 31.135 379 222 15 4 365 6 362 1.33e-40 146
Msa0392410 MtrunA17_Chr6g0459921 32.927 246 161 4 124 368 119 361 4.57e-40 145
Msa0392410 MtrunA17_Chr8g0371481 27.684 354 242 10 1 348 8 353 6.30e-40 145
Msa0392410 MtrunA17_Chr8g0349341 29.973 377 225 15 4 365 10 362 2.56e-39 143
Msa0392410 MtrunA17_Chr6g0455661 32.800 250 160 5 120 368 230 472 1.81e-38 143
Msa0392410 MtrunA17_Chr6g0455661 59.000 100 40 1 35 134 30 128 1.25e-29 119
Msa0392410 MtrunA17_Chr1g0157001 29.912 341 216 8 41 366 41 373 4.34e-36 135
Msa0392410 MtrunA17_Chr2g0301641 30.499 341 215 13 37 365 44 374 5.27e-36 135
Msa0392410 MtrunA17_Chr8g0349301 31.098 328 192 13 1 317 3 307 3.98e-33 125
Msa0392410 MtrunA17_Chr8g0344941 28.308 325 217 9 36 352 41 357 8.48e-33 126
Msa0392410 MtrunA17_Chr8g0344931 28.571 364 236 12 10 365 11 358 2.52e-32 124
Msa0392410 MtrunA17_Chr1g0178931 30.255 314 186 10 37 340 38 328 3.48e-30 118
Msa0392410 MtrunA17_Chr8g0349331 27.926 376 202 14 4 365 10 330 1.93e-29 115
Msa0392410 MtrunA17_Chr1g0178941 29.560 318 191 10 37 340 41 339 6.47e-28 112
Msa0392410 MtrunA17_Chr7g0254461 28.655 342 200 14 33 343 40 368 4.46e-27 110
Msa0392410 MtrunA17_Chr8g0370981 26.154 390 225 11 30 366 38 417 5.59e-27 110
Msa0392410 MtrunA17_Chr4g0027571 35.227 176 109 4 173 346 37 209 6.44e-27 106
Msa0392410 MtrunA17_Chr2g0317271 27.513 378 226 15 3 360 6 355 1.26e-26 108
Msa0392410 MtrunA17_Chr2g0317261 27.056 377 227 15 4 360 7 355 9.92e-26 106
Msa0392410 MtrunA17_Chr8g0381581 27.976 336 205 12 35 343 39 364 2.75e-25 105
Msa0392410 MtrunA17_Chr7g0226911 26.010 396 242 11 4 364 3 382 4.54e-25 105
Msa0392410 MtrunA17_Chr2g0285041 40.157 127 74 2 89 214 1 126 4.90e-25 99.4
Msa0392410 MtrunA17_Chr0c01g0489581 27.056 377 227 15 4 360 7 355 6.40e-25 103
Msa0392410 MtrunA17_Chr0c01g0489571 27.056 377 227 15 4 360 7 355 1.20e-24 103
Msa0392410 MtrunA17_Chr7g0229591 34.659 176 107 5 34 206 28 198 3.81e-24 99.0
Msa0392410 MtrunA17_Chr8g0370961 29.435 248 152 9 131 366 7 243 4.21e-24 99.4
Msa0392410 MtrunA17_Chr2g0284931 30.328 244 140 9 128 368 4 220 1.78e-23 97.1
Msa0392410 MtrunA17_Chr7g0229581 38.636 132 79 2 216 346 12 142 2.77e-23 95.1
Msa0392410 MtrunA17_Chr7g0266061 28.571 315 191 12 37 340 43 334 4.41e-23 99.0
Msa0392410 MtrunA17_Chr5g0440501 25.301 249 168 8 130 366 7 249 7.91e-23 96.3
Msa0392410 MtrunA17_Chr1g0160011 26.844 339 206 12 35 346 39 362 3.72e-22 96.7
Msa0392410 MtrunA17_Chr8g0347751 26.944 360 221 11 38 368 38 384 6.85e-22 95.9
Msa0392410 MtrunA17_Chr1g0198381 27.812 320 186 13 37 340 3 293 9.75e-22 94.4
Msa0392410 MtrunA17_Chr3g0104821 26.706 337 207 13 38 348 46 368 1.73e-21 94.7
Msa0392410 MtrunA17_Chr6g0469511 48.421 95 46 2 34 125 28 122 2.95e-21 89.0
Msa0392410 MtrunA17_Chr1g0160031 26.488 336 211 12 35 346 38 361 4.94e-21 93.6
Msa0392410 MtrunA17_Chr7g0226931 25.258 388 230 12 5 347 7 379 1.04e-20 92.8
Msa0392410 MtrunA17_Chr1g0159981 26.271 354 216 13 35 359 45 382 1.42e-20 92.0
Msa0392410 MtrunA17_Chr7g0271551 27.164 335 215 13 38 359 38 356 2.60e-20 91.3
Msa0392410 MtrunA17_Chr1g0159991 26.087 345 228 11 35 359 35 372 2.78e-20 91.3
Msa0392410 MtrunA17_Chr6g0450731 24.403 377 245 10 1 362 6 357 5.78e-20 90.1
Msa0392410 MtrunA17_Chr1g0159971 26.571 350 221 11 38 362 49 387 6.36e-20 90.5
Msa0392410 MtrunA17_Chr6g0450701 27.114 343 205 10 33 348 36 360 6.65e-20 90.1
Msa0392410 MtrunA17_Chr7g0273101 26.239 343 208 11 35 347 28 355 9.83e-20 89.7
Msa0392410 MtrunA17_Chr7g0226941 27.147 361 220 12 15 347 14 359 1.51e-19 89.0
Msa0392410 MtrunA17_Chr4g0027561 44.681 94 49 2 34 124 28 121 1.61e-19 84.3
Msa0392410 MtrunA17_Chr6g0450711 26.549 339 208 10 35 348 121 443 1.77e-19 89.4
Msa0392410 MtrunA17_Chr1g0189921 45.918 98 51 2 30 125 25 122 2.35e-19 84.0
Msa0392410 MtrunA17_Chr2g0301581 28.267 329 195 14 38 348 36 341 2.55e-19 88.2
Msa0392410 MtrunA17_Chr1g0198351 28.135 327 175 15 37 340 44 333 2.78e-19 88.2
Msa0392410 MtrunA17_Chr2g0301541 28.399 331 192 15 38 348 36 341 4.32e-19 87.4
Msa0392410 MtrunA17_Chr3g0112821 25.153 326 218 11 38 348 32 346 3.77e-18 84.7
Msa0392410 MtrunA17_Chr2g0285051 60.317 63 25 0 28 90 28 90 8.63e-18 78.6
Msa0392410 MtrunA17_Chr7g0275291 25.000 356 221 11 38 364 35 373 9.92e-18 84.0
Msa0392410 MtrunA17_Chr2g0283511 25.749 334 207 14 41 347 36 355 1.53e-17 83.2
Msa0392410 MtrunA17_Chr8g0370971 39.655 116 63 2 30 138 32 147 4.89e-17 77.8
Msa0392410 MtrunA17_Chr2g0283501 25.691 362 233 14 16 349 3 356 2.89e-16 79.3
Msa0392410 MtrunA17_Chr3g0093031 25.152 330 218 12 38 348 32 351 4.12e-16 79.0
Msa0392410 MtrunA17_Chr2g0321991 38.843 121 64 5 3 119 5 119 5.25e-16 73.9
Msa0392410 MtrunA17_Chr2g0283481 25.449 334 212 14 38 347 49 369 5.94e-15 75.5
Msa0392410 MtrunA17_Chr2g0283531 25.815 368 232 16 6 348 3 354 2.65e-14 73.6
Msa0392410 MtrunA17_Chr1g0189911 29.452 146 98 5 225 367 3 146 2.74e-14 69.7
Msa0392410 MtrunA17_Chr2g0308201 53.571 56 26 0 34 89 33 88 1.07e-13 66.2
Msa0392410 MtrunA17_Chr1g0191461 24.277 346 210 10 35 347 30 356 1.83e-13 70.9
Msa0392410 MtrunA17_Chr7g0228261 38.372 86 52 1 284 368 7 92 3.10e-13 65.1
Msa0392410 MtrunA17_Chr1g0178951 40.909 88 46 2 37 120 18 103 3.27e-12 62.8
Msa0392410 MtrunA17_Chr2g0301571 28.179 291 167 15 76 348 31 297 1.30e-11 65.1
Msa0392410 MtrunA17_Chr6g0469521 33.898 118 76 2 216 332 36 152 1.41e-11 62.0
Msa0392410 MtrunA17_Chr3g0104831 25.564 266 163 11 106 348 34 287 3.10e-11 63.9
Msa0392410 MtrunA17_Chr4g0018561 57.692 52 21 1 34 84 28 79 3.45e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392410 AT1G33811.1 71.387 346 94 4 28 368 25 370 6.63e-178 499
Msa0392410 AT4G18970.1 55.030 338 147 4 34 368 26 361 4.84e-123 359
Msa0392410 AT4G18970.2 55.193 337 146 4 35 368 27 361 9.95e-122 358
Msa0392410 AT5G45670.1 54.599 337 148 4 35 368 28 362 3.10e-120 352
Msa0392410 AT1G29670.1 50.000 362 170 7 12 368 8 363 1.33e-118 348
Msa0392410 AT1G29670.2 50.000 362 170 7 12 368 76 431 7.77e-118 348
Msa0392410 AT1G29660.1 51.622 339 158 5 33 368 29 364 2.26e-112 332
Msa0392410 AT1G71691.2 47.337 338 168 8 34 368 53 383 5.39e-101 304
Msa0392410 AT5G15720.1 48.974 341 162 10 35 368 29 364 1.27e-97 295
Msa0392410 AT1G71250.1 45.170 352 183 7 24 368 25 373 4.09e-96 291
Msa0392410 AT5G08460.1 43.860 342 180 8 35 368 48 385 1.71e-90 277
Msa0392410 AT2G19010.1 41.716 338 179 8 31 366 25 346 3.25e-86 265
Msa0392410 AT2G19010.2 41.716 338 179 8 31 366 55 376 1.76e-85 264
Msa0392410 AT2G19050.1 41.888 339 181 7 31 368 26 349 2.62e-82 255
Msa0392410 AT2G19060.1 41.329 346 187 7 24 367 18 349 3.87e-81 252
Msa0392410 AT4G30140.1 42.012 338 176 8 30 365 27 346 6.72e-81 251
Msa0392410 AT1G71691.1 43.007 286 153 8 86 368 4 282 1.21e-72 228
Msa0392410 AT5G15720.3 43.878 294 154 9 82 368 44 333 2.28e-71 226
Msa0392410 AT2G23540.1 38.770 374 211 11 6 365 15 384 5.46e-67 216
Msa0392410 AT5G15720.2 47.955 269 129 9 35 297 29 292 5.61e-67 214
Msa0392410 AT1G71691.3 45.489 266 136 7 34 297 53 311 9.95e-67 213
Msa0392410 AT2G19050.2 42.748 262 139 4 31 291 26 277 2.24e-64 206
Msa0392410 AT3G50400.1 40.525 343 188 11 38 368 36 374 2.52e-64 209
Msa0392410 AT5G37690.1 39.118 340 194 10 13 347 4 335 6.98e-64 207
Msa0392410 AT4G10950.2 37.003 327 191 8 28 347 63 381 3.83e-62 204
Msa0392410 AT4G28780.1 34.853 373 228 11 1 368 1 363 6.88e-61 200
Msa0392410 AT4G10950.1 36.086 327 190 8 28 347 63 377 1.64e-59 197
Msa0392410 AT3G04290.1 36.391 338 205 8 36 368 29 361 2.31e-59 196
Msa0392410 AT1G75890.2 35.159 347 211 10 8 347 19 358 3.94e-59 196
Msa0392410 AT1G75890.3 35.159 347 211 10 8 347 48 387 5.08e-59 196
Msa0392410 AT5G37690.2 38.235 340 189 11 13 347 4 327 7.75e-59 194
Msa0392410 AT1G74460.1 39.937 318 174 12 38 347 25 333 3.81e-57 190
Msa0392410 AT5G33370.1 33.711 353 220 9 20 365 14 359 5.95e-57 190
Msa0392410 AT5G22810.1 34.384 349 216 9 8 347 3 347 7.44e-57 189
Msa0392410 AT5G41890.1 34.625 387 208 12 1 365 9 372 9.87e-57 189
Msa0392410 AT1G75890.1 33.983 359 212 10 8 347 19 371 2.48e-56 189
Msa0392410 AT5G18430.1 34.030 335 207 8 36 362 28 356 1.13e-55 186
Msa0392410 AT5G55050.1 33.141 347 207 12 34 365 37 373 3.99e-54 183
Msa0392410 AT1G75880.2 33.523 352 219 11 5 348 20 364 2.73e-53 181
Msa0392410 AT1G75880.1 33.523 352 220 10 5 348 20 365 2.86e-53 181
Msa0392410 AT3G14820.1 32.416 327 197 11 34 348 30 344 6.38e-49 169
Msa0392410 AT1G20120.1 34.161 322 195 10 35 348 77 389 9.17e-49 169
Msa0392410 AT2G04570.1 34.043 329 192 12 33 349 25 340 1.61e-48 167
Msa0392410 AT1G75900.1 31.871 342 207 12 10 340 19 345 3.36e-48 167
Msa0392410 AT3G53100.1 33.435 329 200 10 28 347 21 339 6.72e-48 166
Msa0392410 AT1G59406.1 32.609 322 199 12 28 342 22 332 2.07e-47 164
Msa0392410 AT1G59030.1 32.609 322 199 12 28 342 22 332 2.07e-47 164
Msa0392410 AT1G58725.1 32.609 322 199 12 28 342 22 332 2.07e-47 164
Msa0392410 AT5G03820.1 33.645 321 200 9 34 347 31 345 7.55e-47 163
Msa0392410 AT5G42170.1 32.298 322 202 10 27 342 41 352 8.79e-47 163
Msa0392410 AT5G03820.2 33.645 321 200 9 34 347 59 373 1.49e-46 163
Msa0392410 AT3G16370.1 34.462 325 201 10 31 349 25 343 1.28e-45 160
Msa0392410 AT1G20130.2 32.024 331 195 10 30 342 178 496 3.56e-45 162
Msa0392410 AT1G20130.1 32.024 331 195 10 30 342 198 516 7.65e-45 162
Msa0392410 AT5G03810.1 32.812 320 203 9 34 347 28 341 1.38e-44 157
Msa0392410 AT1G20132.1 31.250 336 201 10 30 348 55 377 1.42e-44 158
Msa0392410 AT1G73610.1 34.185 313 180 11 34 340 33 325 1.70e-44 157
Msa0392410 AT2G03980.2 32.544 338 199 15 31 355 38 359 1.06e-43 155
Msa0392410 AT2G03980.3 32.544 338 199 15 31 355 38 359 1.06e-43 155
Msa0392410 AT2G03980.1 32.544 338 199 15 31 355 38 359 1.06e-43 155
Msa0392410 AT2G03980.4 32.544 338 199 15 31 355 38 359 1.06e-43 155
Msa0392410 AT4G16230.1 43.810 210 107 8 31 234 25 229 2.93e-43 150
Msa0392410 AT2G42990.1 31.700 347 209 11 15 347 6 338 3.89e-42 150
Msa0392410 AT2G31540.1 32.063 315 197 11 35 340 34 340 1.64e-41 149
Msa0392410 AT4G26790.1 30.556 324 206 8 33 347 26 339 2.14e-41 149
Msa0392410 AT4G26790.2 30.556 324 206 8 33 347 26 339 2.14e-41 149
Msa0392410 AT2G40250.1 28.313 332 205 9 34 347 34 350 5.51e-41 148
Msa0392410 AT1G58430.1 29.841 315 204 11 35 340 34 340 9.47e-41 147
Msa0392410 AT2G30220.1 30.159 315 207 10 35 342 32 340 1.14e-40 147
Msa0392410 AT1G75920.2 33.846 325 190 11 32 348 25 332 1.86e-40 146
Msa0392410 AT1G06990.1 30.625 320 208 10 35 347 36 348 1.92e-40 146
Msa0392410 AT2G30310.1 29.338 317 207 11 35 342 33 341 3.27e-40 145
Msa0392410 AT1G58520.3 31.269 323 197 13 27 342 21 325 4.37e-40 145
Msa0392410 AT1G58525.1 31.269 323 197 13 27 342 21 325 4.37e-40 145
Msa0392410 AT2G24560.1 29.841 315 204 11 35 340 33 339 1.96e-39 144
Msa0392410 AT1G23500.1 34.568 324 179 13 34 347 33 333 1.12e-38 141
Msa0392410 AT5G33370.2 33.681 288 167 8 20 301 14 283 1.62e-38 140
Msa0392410 AT3G43570.1 28.402 338 196 11 11 342 6 303 4.21e-38 139
Msa0392410 AT1G20135.1 32.248 307 187 11 40 342 33 322 4.57e-38 139
Msa0392410 AT5G63170.1 30.435 322 187 12 33 342 25 321 5.80e-38 139
Msa0392410 AT5G45960.1 28.402 338 210 11 22 340 30 354 7.06e-37 137
Msa0392410 AT1G75920.1 32.353 340 190 12 32 348 20 342 1.13e-36 136
Msa0392410 AT1G75930.1 33.230 322 184 11 38 348 31 332 1.37e-36 135
Msa0392410 AT5G45950.1 30.816 331 208 14 32 355 36 352 7.19e-36 134
Msa0392410 AT1G71120.1 29.825 342 217 10 34 366 29 356 2.73e-35 132
Msa0392410 AT1G75910.1 30.769 325 195 10 35 348 27 332 9.22e-34 128
Msa0392410 AT3G43550.1 30.272 294 187 12 10 297 5 286 3.24e-33 125
Msa0392410 AT3G14225.2 31.105 344 215 13 38 368 39 373 8.65e-33 126
Msa0392410 AT3G14225.1 31.214 346 216 13 38 368 39 377 2.51e-32 125
Msa0392410 AT5G40990.1 31.594 345 216 12 36 368 37 373 1.12e-31 123
Msa0392410 AT1G75920.3 30.960 323 171 11 32 348 25 301 8.70e-31 119
Msa0392410 AT1G75920.4 32.432 296 177 11 60 348 25 304 1.45e-29 116
Msa0392410 AT1G53920.1 29.213 356 208 14 34 365 46 381 8.35e-29 115
Msa0392410 AT2G04020.1 36.620 213 119 7 31 237 38 240 5.38e-28 110
Msa0392410 AT2G04020.2 30.240 334 170 13 31 355 38 317 8.34e-28 111
Msa0392410 AT2G24560.2 29.562 274 176 11 35 299 33 298 5.89e-27 109
Msa0392410 AT1G53940.2 30.484 351 212 14 36 368 39 375 1.21e-26 109
Msa0392410 AT1G54030.1 28.274 336 212 15 37 368 53 363 5.60e-25 105
Msa0392410 AT1G54010.1 25.641 351 234 12 26 367 24 356 6.12e-25 105
Msa0392410 AT1G54020.2 25.507 345 227 12 31 367 26 348 6.99e-25 104
Msa0392410 AT1G53990.1 28.307 378 236 14 5 368 8 364 1.88e-24 103
Msa0392410 AT3G09930.2 27.864 323 187 12 37 340 40 335 9.01e-24 101
Msa0392410 AT3G09930.1 27.864 323 187 12 37 340 40 335 9.01e-24 101
Msa0392410 AT1G54000.1 26.271 354 228 14 26 367 24 356 1.79e-23 100
Msa0392410 AT4G16233.1 42.063 126 70 3 245 368 6 130 3.11e-23 94.4
Msa0392410 AT3G14220.1 28.947 342 216 14 33 366 29 351 4.59e-23 99.4
Msa0392410 AT3G62280.1 29.513 349 210 14 30 361 30 359 4.66e-23 99.4
Msa0392410 AT5G03600.1 28.571 322 187 13 32 340 10 301 2.46e-22 96.7
Msa0392410 AT5G03600.2 27.950 322 189 12 32 340 45 336 3.60e-22 96.7
Msa0392410 AT5G03610.1 28.125 320 187 14 38 340 45 338 5.08e-22 96.3
Msa0392410 AT1G28570.1 26.455 378 228 17 1 348 1 358 6.12e-22 96.7
Msa0392410 AT3G05180.1 28.739 341 202 15 35 347 35 362 3.09e-21 94.4
Msa0392410 AT4G16220.1 37.566 189 98 6 31 216 25 196 4.83e-21 91.3
Msa0392410 AT1G09390.1 25.581 344 225 10 32 359 33 361 8.74e-21 92.8
Msa0392410 AT1G56670.1 25.330 379 232 15 7 359 10 363 1.16e-20 92.8
Msa0392410 AT3G27950.1 25.634 355 230 11 35 368 31 372 1.85e-20 92.0
Msa0392410 AT3G26430.1 26.866 335 210 12 35 343 30 355 7.08e-20 90.5
Msa0392410 AT1G31550.2 25.672 335 206 12 40 347 40 358 7.53e-20 90.5
Msa0392410 AT2G31550.1 28.646 192 126 6 154 340 14 199 9.97e-20 87.0
Msa0392410 AT1G67830.1 25.788 349 206 12 33 346 27 357 2.26e-19 89.0
Msa0392410 AT1G31550.1 25.150 334 206 12 40 347 40 355 3.00e-19 88.6
Msa0392410 AT1G28590.1 26.627 338 202 14 40 348 40 360 3.19e-19 88.6
Msa0392410 AT1G54790.3 25.000 352 237 10 33 363 29 374 3.50e-19 88.6
Msa0392410 AT1G28580.1 25.661 378 227 16 1 349 10 362 4.35e-19 88.2
Msa0392410 AT3G14210.1 26.184 359 214 17 31 367 29 358 5.99e-19 87.8
Msa0392410 AT5G14450.1 25.843 356 227 11 35 364 40 384 1.75e-18 86.7
Msa0392410 AT4G01130.1 25.294 340 214 10 38 349 36 363 3.86e-18 85.5
Msa0392410 AT2G27360.1 25.143 350 227 15 40 365 37 375 5.08e-18 85.1
Msa0392410 AT5G45910.1 29.032 341 212 16 25 342 20 353 1.71e-17 83.6
Msa0392410 AT2G36325.1 27.528 356 212 17 6 340 10 340 1.80e-17 83.2
Msa0392410 AT3G48460.1 23.565 331 219 14 38 347 40 357 5.42e-16 79.0
Msa0392410 AT1G54790.1 24.507 355 231 11 35 363 30 373 7.63e-16 78.6
Msa0392410 AT1G28600.1 25.301 332 211 13 40 347 35 353 8.28e-16 78.6
Msa0392410 AT1G28610.2 22.928 362 236 12 24 356 19 366 1.77e-15 77.4
Msa0392410 AT1G54020.1 23.675 283 190 9 90 367 1 262 3.05e-15 75.9
Msa0392410 AT1G54020.5 23.675 283 190 9 90 367 1 262 3.05e-15 75.9
Msa0392410 AT1G54020.3 23.675 283 190 9 90 367 1 262 3.05e-15 75.9
Msa0392410 AT1G28650.1 23.238 383 240 16 4 359 16 371 4.32e-15 76.3
Msa0392410 AT1G53940.1 29.520 271 165 12 36 295 39 294 4.54e-15 75.5
Msa0392410 AT1G28640.1 24.438 356 208 15 40 359 39 369 4.88e-15 76.3
Msa0392410 AT1G54030.2 27.757 263 164 12 36 295 52 291 1.63e-14 73.9
Msa0392410 AT3G62280.2 28.571 280 166 11 30 293 30 291 7.10e-14 72.0
Msa0392410 AT1G28670.1 24.024 333 206 13 40 342 39 354 1.27e-13 72.0
Msa0392410 AT1G28660.2 24.501 351 192 15 40 348 39 358 1.82e-13 71.6
Msa0392410 AT1G54790.2 23.360 381 229 13 35 363 30 399 8.54e-12 66.6
Msa0392410 AT1G54020.4 24.883 213 145 8 162 367 9 213 1.83e-11 63.9
Msa0392410 AT4G01130.2 24.364 275 181 8 38 297 36 298 5.49e-11 63.5

Find 98 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCCATGTTTCTTCATATT+TGG 0.151987 3_2:+5532976 Msa0392410:CDS
AAACCCCTTGCTCTTGAATT+TGG 0.162052 3_2:-5533468 None:intergenic
TGCCAATTGTTGGATATTAA+TGG 0.219897 3_2:-5539718 None:intergenic
GTTACAGCAGTTGGTCAAAT+TGG 0.223495 3_2:+5534464 Msa0392410:CDS
AGCAAATGCATATATTATTC+AGG 0.228493 3_2:+5533774 Msa0392410:CDS
TATAATTGCAGCTCAACTTT+TGG 0.269085 3_2:+5533425 Msa0392410:intron
TATGAATTAGCACGTATTAA+TGG 0.270158 3_2:+5534497 Msa0392410:CDS
GGCGACTCATTGGTTGATAA+TGG 0.292013 3_2:+5532997 Msa0392410:CDS
ATCGTGGGAAATATTTGTTT+TGG 0.314915 3_2:+5539619 Msa0392410:CDS
GCCAATTGTTGGATATTAAT+GGG 0.327993 3_2:-5539717 None:intergenic
AGTGCAGATCTAGCATTAAA+TGG 0.346283 3_2:+5534656 Msa0392410:CDS
TATCAATGGAGGGCAGCTTC+CGG 0.349478 3_2:+5534598 Msa0392410:CDS
ATCAATGGAGGGCAGCTTCC+GGG 0.356171 3_2:+5534599 Msa0392410:CDS
CGAACCTTCGTCGATGCATT+AGG 0.365692 3_2:+5533114 Msa0392410:CDS
AGGGCTAATTATCGACCTTA+TGG 0.366890 3_2:+5533048 Msa0392410:CDS
TCCCATTAATATCCAACAAT+TGG 0.374975 3_2:+5539716 Msa0392410:CDS
TCTAAAGCATTGCCAATTGT+TGG 0.375039 3_2:-5539728 None:intergenic
CAGTCATGAAATAGTTGTTC+AGG 0.377347 3_2:-5533815 None:intergenic
CCCCTTGCTCTTGAATTTGG+AGG 0.378814 3_2:-5533465 None:intergenic
CTTCATATTTGGCGACTCAT+TGG 0.380484 3_2:+5532987 Msa0392410:CDS
AGGGCAGATGCAAAAGCTTT+AGG 0.387451 3_2:-5533867 None:intergenic
AAATTCAAGAGCAAGGGGTT+TGG 0.392526 3_2:+5533470 Msa0392410:CDS
TGCATATATTATTCAGGGTT+GGG 0.404381 3_2:+5533780 Msa0392410:CDS
TCCTACAAAATGTTTGTCTC+AGG 0.412148 3_2:+5532924 Msa0392410:CDS
AGCATTAAATGGAAAATCAA+TGG 0.419825 3_2:+5534667 Msa0392410:CDS
AGAGGAGTCAATTATGCATC+TGG 0.423551 3_2:+5533501 Msa0392410:CDS
TTAATTTACTCACAGATAGT+TGG 0.426379 3_2:-5533908 None:intergenic
CAAATGAGAAGGTTCTTTAG+AGG 0.429552 3_2:+5533723 Msa0392410:CDS
AATTAGCCCTAGCAAGTGTT+AGG 0.433591 3_2:-5533035 None:intergenic
TAAGACCTGAGTTAAAATAC+TGG 0.436936 3_2:-5534559 None:intergenic
TCTTCACATACTTGTTGTAA+TGG 0.441043 3_2:-5539597 None:intergenic
GCAGGCATCAGAGAGGAAAC+AGG 0.442089 3_2:+5533528 Msa0392410:CDS
AGGGGTTTGGACCTTCTTAG+AGG 0.442660 3_2:+5533483 Msa0392410:CDS
ACTGAGCAAGTGACAAACTT+TGG 0.446748 3_2:+5533687 Msa0392410:CDS
TTGTGAACTGTATGATGCTT+TGG 0.450987 3_2:-5539682 None:intergenic
TTACAGCAGTTGGTCAAATT+GGG 0.452443 3_2:+5534465 Msa0392410:CDS
ATGCATATATTATTCAGGGT+TGG 0.453650 3_2:+5533779 Msa0392410:CDS
GTTAATCTTCTCATTGCATC+CGG 0.456244 3_2:-5534528 None:intergenic
AGAAATGTTTCGTACACGTA+TGG 0.460587 3_2:+5539851 Msa0392410:three_prime_UTR
TTAATACGTGCTAATTCATA+TGG 0.463074 3_2:-5534494 None:intergenic
AATAATATATGCATTTGCTT+AGG 0.472093 3_2:-5533770 None:intergenic
GCAAATGCATATATTATTCA+GGG 0.476578 3_2:+5533775 Msa0392410:CDS
ATCGACGAAGGTTCGACCAT+TGG 0.483856 3_2:-5533106 None:intergenic
CATGGCACTTGTTGTCCCTC+CGG 0.494961 3_2:-5532961 None:intergenic
CACATACTTGTTGTAATGGA+AGG 0.499795 3_2:-5539593 None:intergenic
TCCTCCAAATTCAAGAGCAA+GGG 0.502054 3_2:+5533464 Msa0392410:CDS
GCATTAAATGGAAAATCAAT+GGG 0.502185 3_2:+5534668 Msa0392410:CDS
AATTATGCATCTGGAGCAGC+AGG 0.508819 3_2:+5533510 Msa0392410:CDS
CAATTAGTTCAGAATATCAA+TGG 0.510533 3_2:+5534584 Msa0392410:CDS
ATGGGATCCTAACACTTGCT+AGG 0.512016 3_2:+5533028 Msa0392410:CDS
AAAATGTTGGCCAACTCAGT+TGG 0.512592 3_2:-5539654 None:intergenic
TAATATTGTCCAGAATTACA+TGG 0.515959 3_2:+5534425 Msa0392410:intron
TGTGGGAAGTCGATGCCATA+AGG 0.521963 3_2:-5533063 None:intergenic
TGCTTTCCACCCAACTGAGT+TGG 0.522513 3_2:+5539644 Msa0392410:CDS
AAATGTTGGCCAACTCAGTT+GGG 0.523121 3_2:-5539653 None:intergenic
TTCCTCCAAATTCAAGAGCA+AGG 0.526404 3_2:+5533463 Msa0392410:CDS
CATAATTGACTCCTCTAAGA+AGG 0.526704 3_2:-5533494 None:intergenic
AAGCGACCGGTGGGACCTTG+TGG 0.527657 3_2:-5533081 None:intergenic
TTGATAATGGAAACAACAAT+GGG 0.532524 3_2:+5533010 Msa0392410:CDS
GACAAGGGATGCTGTGGTGT+TGG 0.534229 3_2:+5539546 Msa0392410:CDS
GGCGAGCGTAGTCTTGAAGA+AGG 0.538225 3_2:-5533887 None:intergenic
GAAATGTTTCGTACACGTAT+GGG 0.542008 3_2:+5539852 Msa0392410:three_prime_UTR
GTTGATAATGGAAACAACAA+TGG 0.544775 3_2:+5533009 Msa0392410:CDS
AGCGACCGGTGGGACCTTGT+GGG 0.545059 3_2:-5533080 None:intergenic
TGTTGTCCCTCCGGTTGCCG+TGG 0.548026 3_2:-5532952 None:intergenic
AAAGTGATCGTTACAGCAGT+TGG 0.549990 3_2:+5534455 Msa0392410:CDS
AATATTGTCCAGAATTACAT+GGG 0.553279 3_2:+5534426 Msa0392410:intron
TCGACCATTGGTGAAGCGAC+CGG 0.554522 3_2:-5533094 None:intergenic
AACAAGTATGTGAAGATCGT+GGG 0.555057 3_2:+5539604 Msa0392410:CDS
GACTTCCCACAAGGTCCCAC+CGG 0.565595 3_2:+5533075 Msa0392410:CDS
CGTATTAATGGTAACATCAC+CGG 0.574338 3_2:+5534509 Msa0392410:CDS
CCCACCGGTCGCTTCACCAA+TGG 0.577167 3_2:+5533090 Msa0392410:CDS
TCATATTGTTCATTTGTGTG+TGG 0.579622 3_2:+5539766 Msa0392410:three_prime_UTR
AGAGGAAACAGGCAGTAACC+TGG 0.589288 3_2:+5533539 Msa0392410:CDS
CCTCCAAATTCAAGAGCAAG+GGG 0.596481 3_2:+5533465 Msa0392410:CDS
CAACAAGTATGTGAAGATCG+TGG 0.597220 3_2:+5539603 Msa0392410:CDS
ACCATTGGTGAAGCGACCGG+TGG 0.597222 3_2:-5533091 None:intergenic
TGCTTTGGCTAGTAAAATGT+TGG 0.597725 3_2:-5539667 None:intergenic
ACCTGAGTTAAAATACTGGA+TGG 0.601483 3_2:-5534555 None:intergenic
TGGGATCCTAACACTTGCTA+GGG 0.606593 3_2:+5533029 Msa0392410:CDS
AGGGTTTGATGTGGTAGACA+AGG 0.614118 3_2:+5539530 Msa0392410:intron
TTAGTTCAGAATATCAATGG+AGG 0.620340 3_2:+5534587 Msa0392410:CDS
TGTTGGCCAACTCAGTTGGG+TGG 0.627367 3_2:-5539650 None:intergenic
ACACAGTGCAACAAATGAGA+AGG 0.629161 3_2:+5533712 Msa0392410:CDS
ATTACCTAATGCATCGACGA+AGG 0.630153 3_2:-5533118 None:intergenic
TAGTTCAGAATATCAATGGA+GGG 0.636717 3_2:+5534588 Msa0392410:CDS
TTATGATACAGGGTTTGATG+TGG 0.642111 3_2:+5539521 Msa0392410:intron
TCGCCAAATATGAAGAAACA+TGG 0.643194 3_2:-5532979 None:intergenic
GGGTTTGATGTGGTAGACAA+GGG 0.645221 3_2:+5539531 Msa0392410:intron
GTGGTAGACAAGGGATGCTG+TGG 0.654624 3_2:+5539540 Msa0392410:CDS
GCGAGCGTAGTCTTGAAGAA+GGG 0.654662 3_2:-5533886 None:intergenic
TGTGGTGTTGGCAGAAACAA+TGG 0.658260 3_2:+5539558 Msa0392410:CDS
CTATAAGACAACACACACCA+TGG 0.664970 3_2:-5539830 None:intergenic
TATGGCATCGACTTCCCACA+AGG 0.673822 3_2:+5533066 Msa0392410:CDS
CCATTGGTGAAGCGACCGGT+GGG 0.674337 3_2:-5533090 None:intergenic
ATATTGATCATAAATGTCCA+TGG 0.677023 3_2:+5539813 Msa0392410:three_prime_UTR
TGGAGCAGCAGGCATCAGAG+AGG 0.700418 3_2:+5533521 Msa0392410:CDS
ATATTGTCCAGAATTACATG+GGG 0.714705 3_2:+5534427 Msa0392410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTATTTTTTTAA+AGG + chr3_2:5537346-5537365 Msa0392410:intron 0.0%
!!! TATATAGATTTTAATTACAA+TGG + chr3_2:5533151-5533170 Msa0392410:intron 10.0%
!! TAGTATATTGAAATATTAAA+TGG + chr3_2:5534249-5534268 Msa0392410:intron 10.0%
!!! TATGAAATATATTTTTAAGT+AGG - chr3_2:5534849-5534868 None:intergenic 10.0%
!!! TAGTTTGTTAATTTATTTAA+GGG - chr3_2:5535087-5535106 None:intergenic 10.0%
!!! TTAGTTTGTTAATTTATTTA+AGG - chr3_2:5535088-5535107 None:intergenic 10.0%
!!! TTATAATTTTTTCAATTTTC+TGG - chr3_2:5535674-5535693 None:intergenic 10.0%
!! ACATATTTAAAAAAAAACAT+GGG - chr3_2:5536373-5536392 None:intergenic 10.0%
!! AACATATTTAAAAAAAAACA+TGG - chr3_2:5536374-5536393 None:intergenic 10.0%
!! TAGACAAATATAAAAAATAA+TGG - chr3_2:5536465-5536484 None:intergenic 10.0%
!! TAAAAAAAAAATATCATTCA+TGG - chr3_2:5536595-5536614 None:intergenic 10.0%
!!! AAAGAAATAAATTTAAAGTT+AGG - chr3_2:5536997-5537016 None:intergenic 10.0%
!!! AAATTTATTTCTTTTTGAAA+AGG + chr3_2:5537003-5537022 Msa0392410:intron 10.0%
!!! ATTTTACATGTTATAATAAT+TGG + chr3_2:5538119-5538138 Msa0392410:intron 10.0%
!! TTAACAAAATATTTAATTGT+TGG + chr3_2:5538262-5538281 Msa0392410:intron 10.0%
!! TAACATATATATATATAAGT+AGG + chr3_2:5539141-5539160 Msa0392410:intron 10.0%
!! AACATATATATATATAAGTA+GGG + chr3_2:5539142-5539161 Msa0392410:intron 10.0%
!!! TTTTGAATCATTCTTTAAAT+CGG - chr3_2:5533337-5533356 None:intergenic 15.0%
!! ATATGTATTCATACTAATTT+AGG + chr3_2:5535236-5535255 Msa0392410:intron 15.0%
!! AAGTTAAAATATAGTCAAAT+TGG + chr3_2:5535363-5535382 Msa0392410:intron 15.0%
!!! TGGATTTTTATTTTAAGAAT+GGG - chr3_2:5535565-5535584 None:intergenic 15.0%
!! TATTTCAATTACTGATAAAA+TGG + chr3_2:5535771-5535790 Msa0392410:intron 15.0%
!! AAAATCATGAATTAAACAAA+AGG + chr3_2:5536006-5536025 Msa0392410:intron 15.0%
!! CTAGAAAAAAAAAAAAAACA+AGG - chr3_2:5536533-5536552 None:intergenic 15.0%
!! ATTTGTAATTGATACATAAA+AGG - chr3_2:5536799-5536818 None:intergenic 15.0%
!!! ACTTATTTCTTATGTATTTT+AGG - chr3_2:5536966-5536985 None:intergenic 15.0%
!!! CTCATTTTTTTTAATGAATT+TGG + chr3_2:5537059-5537078 Msa0392410:intron 15.0%
!! TTCTTCAAAAAAAATTACAT+TGG - chr3_2:5537166-5537185 None:intergenic 15.0%
!! CAAGACAAATATTAAAAAAA+AGG - chr3_2:5537440-5537459 None:intergenic 15.0%
!!! TCTTGAATTTTATAAAGTAA+TGG + chr3_2:5537455-5537474 Msa0392410:intron 15.0%
!! ATAATGAATATTAAAAAGCA+CGG - chr3_2:5537755-5537774 None:intergenic 15.0%
!! ATTCAGAATAAAAATAAGTT+AGG - chr3_2:5537863-5537882 None:intergenic 15.0%
!!! TTATTTTTATTCTGAATAAG+TGG + chr3_2:5537866-5537885 Msa0392410:intron 15.0%
!! ATAATAATTGGATAAACATT+CGG + chr3_2:5538131-5538150 Msa0392410:intron 15.0%
!! GAAAATTCAAAAAATAAAGT+CGG - chr3_2:5538190-5538209 None:intergenic 15.0%
!! TTGAGAATAACTTATAATTT+GGG - chr3_2:5538640-5538659 None:intergenic 15.0%
!! TTTGAGAATAACTTATAATT+TGG - chr3_2:5538641-5538660 None:intergenic 15.0%
!! ATTAAGTGATTATACAAATT+GGG + chr3_2:5539032-5539051 Msa0392410:intron 15.0%
!! ACATATATATATATAAGTAG+GGG + chr3_2:5539143-5539162 Msa0392410:intron 15.0%
!!! ATTTATTTTTTTAAAACCCA+AGG + chr3_2:5539182-5539201 Msa0392410:intron 15.0%
!!! AATTTTCTTTTTATGTATGC+AGG + chr3_2:5533647-5533666 Msa0392410:intron 20.0%
!!! ATTTTCTTTTTATGTATGCA+GGG + chr3_2:5533648-5533667 Msa0392410:intron 20.0%
!! AATAATATATGCATTTGCTT+AGG - chr3_2:5533773-5533792 None:intergenic 20.0%
!!! TTATTTTTTGATCCATAAGT+AGG - chr3_2:5534819-5534838 None:intergenic 20.0%
!! ATTGGTGTAATACAAATTAT+AGG + chr3_2:5535381-5535400 Msa0392410:intron 20.0%
!!! TTTTTTATTTTAAATGCAGC+AGG - chr3_2:5535484-5535503 None:intergenic 20.0%
!!! ATTTTTATTTTAAGAATGGG+AGG - chr3_2:5535562-5535581 None:intergenic 20.0%
!!! GTGGATTTTTATTTTAAGAA+TGG - chr3_2:5535566-5535585 None:intergenic 20.0%
!! TTAGTATTTGACTATAATGA+AGG - chr3_2:5535711-5535730 None:intergenic 20.0%
!! CTCAATTATTGCAATAAAAA+TGG + chr3_2:5535747-5535766 Msa0392410:intron 20.0%
!! AAGTCATAACAAATTAACAA+TGG - chr3_2:5536190-5536209 None:intergenic 20.0%
!! CGTAATAAAAAAAAAACAGA+AGG + chr3_2:5536231-5536250 Msa0392410:intron 20.0%
!!! TTTTTTTCTAGATTTACTGA+TGG + chr3_2:5536542-5536561 Msa0392410:intron 20.0%
!! TTCATGGATACAAAAAAATT+GGG - chr3_2:5536579-5536598 None:intergenic 20.0%
!! ATTCATGGATACAAAAAAAT+TGG - chr3_2:5536580-5536599 None:intergenic 20.0%
!! CATTGTTACATAACAAATTT+GGG - chr3_2:5536636-5536655 None:intergenic 20.0%
!! TCATTGTTACATAACAAATT+TGG - chr3_2:5536637-5536656 None:intergenic 20.0%
!! TAATTGATACATAAAAGGTA+CGG - chr3_2:5536794-5536813 None:intergenic 20.0%
!!! TTAAAGCATTTTTTTTCGTA+TGG + chr3_2:5536914-5536933 Msa0392410:intron 20.0%
!! AGAAATACAAAGAAAGAAAA+GGG - chr3_2:5537041-5537060 None:intergenic 20.0%
!! ATAATGAATTTGCATTACTT+TGG + chr3_2:5537082-5537101 Msa0392410:intron 20.0%
!!! TTTTTCATTGACACAAAAAA+CGG - chr3_2:5537251-5537270 None:intergenic 20.0%
!! TCTGATAGATAAAAAAAACA+CGG - chr3_2:5537720-5537739 None:intergenic 20.0%
!!! TAATGAATATTAAAAAGCAC+GGG - chr3_2:5537754-5537773 None:intergenic 20.0%
!!! ATCATTGTAATGTTTTGTTA+AGG + chr3_2:5537937-5537956 Msa0392410:intron 20.0%
!!! CAATTTTTAAAAGACAAACA+AGG - chr3_2:5538239-5538258 None:intergenic 20.0%
!! ACAAAATATTTAATTGTTGG+TGG + chr3_2:5538265-5538284 Msa0392410:intron 20.0%
!! TTATGCAAAAAGTTACATAT+AGG + chr3_2:5538506-5538525 Msa0392410:intron 20.0%
!!! AAGTTGCATTTTTATTTTAC+CGG - chr3_2:5538795-5538814 None:intergenic 20.0%
!! AAAAAAATTAAGTGAAAGAG+AGG + chr3_2:5538879-5538898 Msa0392410:intron 20.0%
!! ATACAAAAAAGAAATGATTC+AGG + chr3_2:5538973-5538992 Msa0392410:intron 20.0%
!! GATTAAGTGATTATACAAAT+TGG + chr3_2:5539031-5539050 Msa0392410:intron 20.0%
!! TTAAGTGATTATACAAATTG+GGG + chr3_2:5539033-5539052 Msa0392410:intron 20.0%
!!! TTGATAATGGAAACAACAAT+GGG + chr3_2:5533010-5533029 Msa0392410:CDS 25.0%
! GAGAATAAATTCTCTTATAG+TGG + chr3_2:5533221-5533240 Msa0392410:intron 25.0%
! CTAATCATAAAATAGAAAGC+CGG + chr3_2:5533268-5533287 Msa0392410:intron 25.0%
! TAATCATAAAATAGAAAGCC+GGG + chr3_2:5533269-5533288 Msa0392410:intron 25.0%
!!! AATCATTTGTTTCTAACGTT+AGG + chr3_2:5533309-5533328 Msa0392410:intron 25.0%
!!! ATCATTTGTTTCTAACGTTA+GGG + chr3_2:5533310-5533329 Msa0392410:intron 25.0%
! AAGAATATATATGCAATACC+AGG - chr3_2:5533560-5533579 None:intergenic 25.0%
!! TTTTCTTTTTATGTATGCAG+GGG + chr3_2:5533649-5533668 Msa0392410:intron 25.0%
! AGCAAATGCATATATTATTC+AGG + chr3_2:5533774-5533793 Msa0392410:CDS 25.0%
! GCAAATGCATATATTATTCA+GGG + chr3_2:5533775-5533794 Msa0392410:CDS 25.0%
! TTAATTTACTCACAGATAGT+TGG - chr3_2:5533911-5533930 None:intergenic 25.0%
! GCTATATATGTAGATTCAAT+TGG - chr3_2:5533953-5533972 None:intergenic 25.0%
! ATTGAATCTACATATATAGC+TGG + chr3_2:5533953-5533972 Msa0392410:intron 25.0%
! AAATGGTATGAATGAGTTAA+CGG + chr3_2:5534266-5534285 Msa0392410:intron 25.0%
! TAATATTGTCCAGAATTACA+TGG + chr3_2:5534425-5534444 Msa0392410:intron 25.0%
! AATATTGTCCAGAATTACAT+GGG + chr3_2:5534426-5534445 Msa0392410:intron 25.0%
! TTAATACGTGCTAATTCATA+TGG - chr3_2:5534497-5534516 None:intergenic 25.0%
! TATGAATTAGCACGTATTAA+TGG + chr3_2:5534497-5534516 Msa0392410:CDS 25.0%
! CAATTAGTTCAGAATATCAA+TGG + chr3_2:5534584-5534603 Msa0392410:CDS 25.0%
! AGCATTAAATGGAAAATCAA+TGG + chr3_2:5534667-5534686 Msa0392410:CDS 25.0%
! GCATTAAATGGAAAATCAAT+GGG + chr3_2:5534668-5534687 Msa0392410:CDS 25.0%
! ATATGCCTATAATAGGTAAA+AGG - chr3_2:5534749-5534768 None:intergenic 25.0%
! CCTAAAAATATGCCTATAAT+AGG - chr3_2:5534756-5534775 None:intergenic 25.0%
!! CCTATTATAGGCATATTTTT+AGG + chr3_2:5534753-5534772 Msa0392410:intron 25.0%
! AAGAAGATAACGTGAAATAA+GGG - chr3_2:5535592-5535611 None:intergenic 25.0%
! TATCTTTAATCATGATGAGA+TGG - chr3_2:5535615-5535634 None:intergenic 25.0%
! TGACTATAATGAAGGTTTAT+AGG - chr3_2:5535703-5535722 None:intergenic 25.0%
! GATGATGAGATTTAAGAAAA+TGG - chr3_2:5535882-5535901 None:intergenic 25.0%
!! TCTGTAGTTTTCACTAAAAT+GGG - chr3_2:5536048-5536067 None:intergenic 25.0%
!! ATCTGTAGTTTTCACTAAAA+TGG - chr3_2:5536049-5536068 None:intergenic 25.0%
! ATTTACATTTCTCAATTTCC+TGG + chr3_2:5536067-5536086 Msa0392410:intron 25.0%
! AAAGGAAACCAGAAATTTAA+TGG + chr3_2:5536102-5536121 Msa0392410:intron 25.0%
!! TTTGTTGTCCATTAAATTTC+TGG - chr3_2:5536113-5536132 None:intergenic 25.0%
!!! TCTTTATCACTGTTTTTATG+AGG - chr3_2:5536765-5536784 None:intergenic 25.0%
!! AATTGATACATAAAAGGTAC+GGG - chr3_2:5536793-5536812 None:intergenic 25.0%
! GAGAAATACAAAGAAAGAAA+AGG - chr3_2:5537042-5537061 None:intergenic 25.0%
! ATTGGATCATGAAAAAAACA+CGG - chr3_2:5537148-5537167 None:intergenic 25.0%
!!! ATTTTTTTTGAAGAAGATCC+AGG + chr3_2:5537171-5537190 Msa0392410:intron 25.0%
!!! TTTTTTTTGAAGAAGATCCA+GGG + chr3_2:5537172-5537191 Msa0392410:intron 25.0%
!! TTTTCATTGACACAAAAAAC+GGG - chr3_2:5537250-5537269 None:intergenic 25.0%
!! TCCACATTTTATTGTGTATT+AGG + chr3_2:5537302-5537321 Msa0392410:intron 25.0%
!! CCACATTTTATTGTGTATTA+GGG + chr3_2:5537303-5537322 Msa0392410:intron 25.0%
!! CACATTTTATTGTGTATTAG+GGG + chr3_2:5537304-5537323 Msa0392410:intron 25.0%
!! ACATTTTATTGTGTATTAGG+GGG + chr3_2:5537305-5537324 Msa0392410:intron 25.0%
! AACTGATACATAAAAAACAC+AGG - chr3_2:5537655-5537674 None:intergenic 25.0%
! CTGATAGATAAAAAAAACAC+GGG - chr3_2:5537719-5537738 None:intergenic 25.0%
! TATATAAGAAAAGTGACATG+TGG - chr3_2:5538389-5538408 None:intergenic 25.0%
!!! CCTATACATACATTTTAGAA+TGG - chr3_2:5538449-5538468 None:intergenic 25.0%
!!! CCATTCTAAAATGTATGTAT+AGG + chr3_2:5538446-5538465 Msa0392410:intron 25.0%
! TATGTATAGGAGATTATTTG+TGG + chr3_2:5538459-5538478 Msa0392410:intron 25.0%
! ATGTATAGGAGATTATTTGT+GGG + chr3_2:5538460-5538479 Msa0392410:intron 25.0%
! TAATATATCAATGGCTAAGA+AGG + chr3_2:5538566-5538585 Msa0392410:intron 25.0%
! AGAATAACTTATAATTTGGG+TGG - chr3_2:5538637-5538656 None:intergenic 25.0%
!! CTCGACTCTTTATTTAAAAT+AGG + chr3_2:5538766-5538785 Msa0392410:intron 25.0%
! AAGAACTTCTAAACATGAAA+GGG + chr3_2:5538853-5538872 Msa0392410:intron 25.0%
! TAAGTGATTATACAAATTGG+GGG + chr3_2:5539034-5539053 Msa0392410:intron 25.0%
!!! ATGTTACTTCCTTTTTTCTT+CGG - chr3_2:5539127-5539146 None:intergenic 25.0%
! ATATATATATAAGTAGGGGT+AGG + chr3_2:5539147-5539166 Msa0392410:intron 25.0%
! TGAATCATAACTTATGATAC+AGG + chr3_2:5539510-5539529 Msa0392410:intron 25.0%
! GAATCATAACTTATGATACA+GGG + chr3_2:5539511-5539530 Msa0392410:intron 25.0%
! ATATTGATCATAAATGTCCA+TGG + chr3_2:5539813-5539832 Msa0392410:three_prime_UTR 25.0%
! ACAAACATTTTGTAGGACTT+AGG - chr3_2:5532921-5532940 None:intergenic 30.0%
!! GTTGATAATGGAAACAACAA+TGG + chr3_2:5533009-5533028 Msa0392410:CDS 30.0%
! CGGCTTTCTATTTTATGATT+AGG - chr3_2:5533270-5533289 None:intergenic 30.0%
AATCATAAAATAGAAAGCCG+GGG + chr3_2:5533270-5533289 Msa0392410:intron 30.0%
! TATAATTGCAGCTCAACTTT+TGG + chr3_2:5533425-5533444 Msa0392410:intron 30.0%
! ATAATTGCAGCTCAACTTTT+GGG + chr3_2:5533426-5533445 Msa0392410:intron 30.0%
AGCACACATTAATTCAACAT+TGG + chr3_2:5533588-5533607 Msa0392410:intron 30.0%
! TTTCTTTTTATGTATGCAGG+GGG + chr3_2:5533650-5533669 Msa0392410:intron 30.0%
ATGCATATATTATTCAGGGT+TGG + chr3_2:5533779-5533798 Msa0392410:CDS 30.0%
TGCATATATTATTCAGGGTT+GGG + chr3_2:5533780-5533799 Msa0392410:CDS 30.0%
CTACATATATAGCTGGATAA+TGG + chr3_2:5533960-5533979 Msa0392410:intron 30.0%
TTATTGAACAGTGTATGTTG+AGG + chr3_2:5533993-5534012 Msa0392410:intron 30.0%
TCTCAAATGGGATAAAAAAG+TGG + chr3_2:5534184-5534203 Msa0392410:intron 30.0%
TATCTGGTCAGTTAATTCAT+AGG - chr3_2:5534318-5534337 None:intergenic 30.0%
ATATTGTCCAGAATTACATG+GGG + chr3_2:5534427-5534446 Msa0392410:intron 30.0%
TAAGACCTGAGTTAAAATAC+TGG - chr3_2:5534562-5534581 None:intergenic 30.0%
TTAGTTCAGAATATCAATGG+AGG + chr3_2:5534587-5534606 Msa0392410:CDS 30.0%
TAGTTCAGAATATCAATGGA+GGG + chr3_2:5534588-5534607 Msa0392410:CDS 30.0%
! CAACACCTTTTACCTATTAT+AGG + chr3_2:5534741-5534760 Msa0392410:intron 30.0%
AATGACATCTAACCTACTTA+TGG + chr3_2:5534804-5534823 Msa0392410:intron 30.0%
CATGTTAAGCAACCAAAAAA+TGG - chr3_2:5535038-5535057 None:intergenic 30.0%
GACTTATGTGTATGCTATAA+GGG - chr3_2:5535317-5535336 None:intergenic 30.0%
AGACTTATGTGTATGCTATA+AGG - chr3_2:5535318-5535337 None:intergenic 30.0%
GGTGTAATACAAATTATAGG+TGG + chr3_2:5535384-5535403 Msa0392410:intron 30.0%
ACAAATTATAGGTGGCATTT+AGG + chr3_2:5535392-5535411 Msa0392410:intron 30.0%
CAAATTATAGGTGGCATTTA+GGG + chr3_2:5535393-5535412 Msa0392410:intron 30.0%
AGAAGATAACGTGAAATAAG+GGG - chr3_2:5535591-5535610 None:intergenic 30.0%
GAAGAAGATAACGTGAAATA+AGG - chr3_2:5535593-5535612 None:intergenic 30.0%
! ATGGAACTACTAAGATTTTG+AGG + chr3_2:5535790-5535809 Msa0392410:intron 30.0%
!! TTTGATTTGAGTTAGGAAAC+TGG - chr3_2:5535854-5535873 None:intergenic 30.0%
!! GGTTGAATTTGATTTGAGTT+AGG - chr3_2:5535861-5535880 None:intergenic 30.0%
! TTCAACCTTTTCTTACCTAT+AGG + chr3_2:5535926-5535945 Msa0392410:intron 30.0%
AGAAACCTATAGGTAAGAAA+AGG - chr3_2:5535934-5535953 None:intergenic 30.0%
!! CTCATTTTTCAGAAACCTAT+AGG - chr3_2:5535944-5535963 None:intergenic 30.0%
TATTATGCCTCAAATATCCA+TGG + chr3_2:5535965-5535984 Msa0392410:intron 30.0%
ATTTCTCAATTTCCTGGATT+GGG + chr3_2:5536073-5536092 Msa0392410:intron 30.0%
ATGAAAAAAACACGGGAAAA+TGG - chr3_2:5537140-5537159 None:intergenic 30.0%
TTGGATCATGAAAAAAACAC+GGG - chr3_2:5537147-5537166 None:intergenic 30.0%
ATGACACAAATATTAATCCC+TGG - chr3_2:5537192-5537211 None:intergenic 30.0%
CCCTAATACACAATAAAATG+TGG - chr3_2:5537306-5537325 None:intergenic 30.0%
! TCCTTTTGGTAAGTCATAAA+TGG + chr3_2:5538293-5538312 Msa0392410:intron 30.0%
ACCATTTATGACTTACCAAA+AGG - chr3_2:5538297-5538316 None:intergenic 30.0%
AAGTCATAAATGGTAGTAAG+TGG + chr3_2:5538303-5538322 Msa0392410:intron 30.0%
!! TTTCATTTTGTTATGCCATG+TGG + chr3_2:5538409-5538428 Msa0392410:intron 30.0%
TGTATAGGAGATTATTTGTG+GGG + chr3_2:5538461-5538480 Msa0392410:intron 30.0%
TATAATTTGGGTGGCATTTA+GGG - chr3_2:5538628-5538647 None:intergenic 30.0%
TTATAATTTGGGTGGCATTT+AGG - chr3_2:5538629-5538648 None:intergenic 30.0%
AGCCTTCTATTTCATAGAAA+CGG - chr3_2:5538748-5538767 None:intergenic 30.0%
! CTTTATTTAAAATAGGCCTC+CGG + chr3_2:5538773-5538792 Msa0392410:intron 30.0%
!!! TTGCATTTTTATTTTACCGG+AGG - chr3_2:5538792-5538811 None:intergenic 30.0%
GTTTAGAAGTTCTTCTGATT+CGG - chr3_2:5538847-5538866 None:intergenic 30.0%
GAAGAACTTCTAAACATGAA+AGG + chr3_2:5538852-5538871 Msa0392410:intron 30.0%
! ATTTACCTAATAGTGTCGTT+TGG + chr3_2:5538906-5538925 Msa0392410:intron 30.0%
TAAACTCTAATTCTCCTTTC+TGG - chr3_2:5539085-5539104 None:intergenic 30.0%
TATCTCACCACTATAGTAAT+AGG - chr3_2:5539341-5539360 None:intergenic 30.0%
! CAAAAAATGTAAGAGTGTGA+TGG + chr3_2:5539392-5539411 Msa0392410:intron 30.0%
! GTAATCATGACAAAAGTACA+TGG + chr3_2:5539450-5539469 Msa0392410:intron 30.0%
!! ATGGTTTCAAAAGCTGATTT+TGG + chr3_2:5539469-5539488 Msa0392410:intron 30.0%
!! TCTTCACATACTTGTTGTAA+TGG - chr3_2:5539600-5539619 None:intergenic 30.0%
! ATCGTGGGAAATATTTGTTT+TGG + chr3_2:5539619-5539638 Msa0392410:CDS 30.0%
!! TCGTGGGAAATATTTGTTTT+GGG + chr3_2:5539620-5539639 Msa0392410:CDS 30.0%
TCCCATTAATATCCAACAAT+TGG + chr3_2:5539716-5539735 Msa0392410:CDS 30.0%
GCCAATTGTTGGATATTAAT+GGG - chr3_2:5539720-5539739 None:intergenic 30.0%
TGCCAATTGTTGGATATTAA+TGG - chr3_2:5539721-5539740 None:intergenic 30.0%
TCATATTGTTCATTTGTGTG+TGG + chr3_2:5539766-5539785 Msa0392410:three_prime_UTR 30.0%
! TTTTCACATTCACGTGTATC+TGG + chr3_2:5532890-5532909 Msa0392410:CDS 35.0%
TCCTACAAAATGTTTGTCTC+AGG + chr3_2:5532924-5532943 Msa0392410:CDS 35.0%
! ACCTGAGACAAACATTTTGT+AGG - chr3_2:5532928-5532947 None:intergenic 35.0%
GTGCCATGTTTCTTCATATT+TGG + chr3_2:5532976-5532995 Msa0392410:CDS 35.0%
TCGCCAAATATGAAGAAACA+TGG - chr3_2:5532982-5533001 None:intergenic 35.0%
! CATAATTGACTCCTCTAAGA+AGG - chr3_2:5533497-5533516 None:intergenic 35.0%
CAAATGAGAAGGTTCTTTAG+AGG + chr3_2:5533723-5533742 Msa0392410:CDS 35.0%
CAGTCATGAAATAGTTGTTC+AGG - chr3_2:5533818-5533837 None:intergenic 35.0%
ATGTGACTAAGAGTCTCAAA+TGG + chr3_2:5534171-5534190 Msa0392410:intron 35.0%
TGTGACTAAGAGTCTCAAAT+GGG + chr3_2:5534172-5534191 Msa0392410:intron 35.0%
GAGTTAACGGTTGAGTTATT+TGG + chr3_2:5534279-5534298 Msa0392410:intron 35.0%
TTACAGCAGTTGGTCAAATT+GGG + chr3_2:5534465-5534484 Msa0392410:CDS 35.0%
CGTATTAATGGTAACATCAC+CGG + chr3_2:5534509-5534528 Msa0392410:CDS 35.0%
GTTAATCTTCTCATTGCATC+CGG - chr3_2:5534531-5534550 None:intergenic 35.0%
ACCTGAGTTAAAATACTGGA+TGG - chr3_2:5534558-5534577 None:intergenic 35.0%
AAAAACACAAACTTTGCTCC+CGG - chr3_2:5534620-5534639 None:intergenic 35.0%
AGTGCAGATCTAGCATTAAA+TGG + chr3_2:5534656-5534675 Msa0392410:CDS 35.0%
AAGAGTTGACAGTATTGTCT+TGG - chr3_2:5534719-5534738 None:intergenic 35.0%
!!! TAGGCATATTTTTAGGCTTG+AGG + chr3_2:5534760-5534779 Msa0392410:intron 35.0%
!! AATGTTAACTTGTGCCTTGA+AGG + chr3_2:5534915-5534934 Msa0392410:intron 35.0%
!! ATGTTAACTTGTGCCTTGAA+GGG + chr3_2:5534916-5534935 Msa0392410:intron 35.0%
!!! AATGCGAAGTTGCCATTTTT+TGG + chr3_2:5535023-5535042 Msa0392410:intron 35.0%
AGTTGATCCATAGAGTCTTA+TGG - chr3_2:5535204-5535223 None:intergenic 35.0%
GAGTCTCATTTCAAATGTTG+CGG + chr3_2:5535260-5535279 Msa0392410:intron 35.0%
GAAGATAACGTGAAATAAGG+GGG - chr3_2:5535590-5535609 None:intergenic 35.0%
! ATCCATGGCTGTGAAATTTT+CGG + chr3_2:5535980-5535999 Msa0392410:intron 35.0%
CATTTCTCAATTTCCTGGAT+TGG + chr3_2:5536072-5536091 Msa0392410:intron 35.0%
! GTTGAAAACTGGCTCTTATA+TGG - chr3_2:5536266-5536285 None:intergenic 35.0%
!! CGGGTTTTATAGTTGAAAAC+TGG - chr3_2:5536277-5536296 None:intergenic 35.0%
CAATGGTTTAGATCTATCAC+TGG - chr3_2:5538535-5538554 None:intergenic 35.0%
TTCATGCATGTTTCCATACA+GGG + chr3_2:5538722-5538741 Msa0392410:intron 35.0%
CAAATCCAAACGACACTATT+AGG - chr3_2:5538914-5538933 None:intergenic 35.0%
CACCAAATTTATGTCCAGAA+AGG + chr3_2:5539068-5539087 Msa0392410:intron 35.0%
CTCCTTTCTGGACATAAATT+TGG - chr3_2:5539073-5539092 None:intergenic 35.0%
AAACGTGTACCGAAGAAAAA+AGG + chr3_2:5539115-5539134 Msa0392410:intron 35.0%
GAACAGCTTATATGGAAAGA+GGG - chr3_2:5539247-5539266 None:intergenic 35.0%
AGAACAGCTTATATGGAAAG+AGG - chr3_2:5539248-5539267 None:intergenic 35.0%
GTTCAACAGAACAGCTTATA+TGG - chr3_2:5539255-5539274 None:intergenic 35.0%
! GTAATAGGAGCATGTTTCAT+TGG - chr3_2:5539326-5539345 None:intergenic 35.0%
ACATGCTCCTATTACTATAG+TGG + chr3_2:5539331-5539350 Msa0392410:intron 35.0%
! AAAATGTAAGAGTGTGATGG+TGG + chr3_2:5539395-5539414 Msa0392410:intron 35.0%
TTATGATACAGGGTTTGATG+TGG + chr3_2:5539521-5539540 Msa0392410:intron 35.0%
!! CACATACTTGTTGTAATGGA+AGG - chr3_2:5539596-5539615 None:intergenic 35.0%
AACAAGTATGTGAAGATCGT+GGG + chr3_2:5539604-5539623 Msa0392410:CDS 35.0%
TGCTTTGGCTAGTAAAATGT+TGG - chr3_2:5539670-5539689 None:intergenic 35.0%
TTGTGAACTGTATGATGCTT+TGG - chr3_2:5539685-5539704 None:intergenic 35.0%
!! TCTAAAGCATTGCCAATTGT+TGG - chr3_2:5539731-5539750 None:intergenic 35.0%
AGAAATGTTTCGTACACGTA+TGG + chr3_2:5539851-5539870 Msa0392410:three_prime_UTR 35.0%
GAAATGTTTCGTACACGTAT+GGG + chr3_2:5539852-5539871 Msa0392410:three_prime_UTR 35.0%
CTTCATATTTGGCGACTCAT+TGG + chr3_2:5532987-5533006 Msa0392410:CDS 40.0%
AATTAGCCCTAGCAAGTGTT+AGG - chr3_2:5533038-5533057 None:intergenic 40.0%
AGGGCTAATTATCGACCTTA+TGG + chr3_2:5533048-5533067 Msa0392410:CDS 40.0%
! ATTACCTAATGCATCGACGA+AGG - chr3_2:5533121-5533140 None:intergenic 40.0%
TTCCTCCAAATTCAAGAGCA+AGG + chr3_2:5533463-5533482 Msa0392410:CDS 40.0%
TCCTCCAAATTCAAGAGCAA+GGG + chr3_2:5533464-5533483 Msa0392410:CDS 40.0%
AAACCCCTTGCTCTTGAATT+TGG - chr3_2:5533471-5533490 None:intergenic 40.0%
AAATTCAAGAGCAAGGGGTT+TGG + chr3_2:5533470-5533489 Msa0392410:CDS 40.0%
AGAGGAGTCAATTATGCATC+TGG + chr3_2:5533501-5533520 Msa0392410:CDS 40.0%
ACTGAGCAAGTGACAAACTT+TGG + chr3_2:5533687-5533706 Msa0392410:CDS 40.0%
ACACAGTGCAACAAATGAGA+AGG + chr3_2:5533712-5533731 Msa0392410:CDS 40.0%
TAACTGACCAGATAACTCCT+CGG + chr3_2:5534324-5534343 Msa0392410:intron 40.0%
TTTCTTGCCCCATGTAATTC+TGG - chr3_2:5534437-5534456 None:intergenic 40.0%
AAAGTGATCGTTACAGCAGT+TGG + chr3_2:5534455-5534474 Msa0392410:CDS 40.0%
GTTACAGCAGTTGGTCAAAT+TGG + chr3_2:5534464-5534483 Msa0392410:CDS 40.0%
!!! GCCATCCAGTATTTTAACTC+AGG + chr3_2:5534554-5534573 Msa0392410:CDS 40.0%
! GGGAGCAAAGTTTGTGTTTT+TGG + chr3_2:5534619-5534638 Msa0392410:CDS 40.0%
TCTTTAACATGTGCCCTTCA+AGG - chr3_2:5534932-5534951 None:intergenic 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr3_2:5535046-5535065 Msa0392410:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr3_2:5535063-5535082 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr3_2:5535064-5535083 None:intergenic 40.0%
GACTAGACCATAAGACTCTA+TGG + chr3_2:5535194-5535213 Msa0392410:intron 40.0%
ATTATAGGTGGCATTTAGGG+TGG + chr3_2:5535396-5535415 Msa0392410:intron 40.0%
! TTATAGGTGGCATTTAGGGT+GGG + chr3_2:5535397-5535416 Msa0392410:intron 40.0%
! GGGAAAGATTTTCCCACTAT+GGG + chr3_2:5535423-5535442 Msa0392410:intron 40.0%
AAGTTGGACTTTCCCATAGT+GGG - chr3_2:5535438-5535457 None:intergenic 40.0%
AAAGTTGGACTTTCCCATAG+TGG - chr3_2:5535439-5535458 None:intergenic 40.0%
TTCACAGCCATGGATATTTG+AGG - chr3_2:5535975-5535994 None:intergenic 40.0%
!! TCCTGGATTGGGTTTTTGAA+AGG + chr3_2:5536084-5536103 Msa0392410:intron 40.0%
TCCTTTCAAAAACCCAATCC+AGG - chr3_2:5536088-5536107 None:intergenic 40.0%
TGGCTCTTATATGGTGATTG+TGG - chr3_2:5536257-5536276 None:intergenic 40.0%
TATAAAACCCGTGCAATGCA+CGG + chr3_2:5536286-5536305 Msa0392410:intron 40.0%
!!! TGTTGGTGGTTTTGTCCTTT+TGG + chr3_2:5538279-5538298 Msa0392410:intron 40.0%
GTGAAATGACACAATCCACA+TGG - chr3_2:5538427-5538446 None:intergenic 40.0%
! AAGAAGGCTACTTTCCATAG+TGG + chr3_2:5538582-5538601 Msa0392410:intron 40.0%
! AGAAGGCTACTTTCCATAGT+GGG + chr3_2:5538583-5538602 Msa0392410:intron 40.0%
GTTCATGCATGTTTCCATAC+AGG + chr3_2:5538721-5538740 Msa0392410:intron 40.0%
GGCCGTTTCTATGAAATAGA+AGG + chr3_2:5538743-5538762 Msa0392410:intron 40.0%
ATTTGTCACTCCTTCGTTGT+GGG + chr3_2:5538929-5538948 Msa0392410:intron 40.0%
GTGGGAAAGGAGAAAATGAA+TGG + chr3_2:5538947-5538966 Msa0392410:intron 40.0%
GTGATTATACAAATTGGGGG+TGG + chr3_2:5539037-5539056 Msa0392410:intron 40.0%
TATACAAATTGGGGGTGGTT+TGG + chr3_2:5539042-5539061 Msa0392410:intron 40.0%
CAACAAGTATGTGAAGATCG+TGG + chr3_2:5539603-5539622 Msa0392410:CDS 40.0%
AAATGTTGGCCAACTCAGTT+GGG - chr3_2:5539656-5539675 None:intergenic 40.0%
AAAATGTTGGCCAACTCAGT+TGG - chr3_2:5539657-5539676 None:intergenic 40.0%
CTATAAGACAACACACACCA+TGG - chr3_2:5539833-5539852 None:intergenic 40.0%
! GTTTGTCTCAGGTTTTGCCA+CGG + chr3_2:5532935-5532954 Msa0392410:CDS 45.0%
!! GGCGACTCATTGGTTGATAA+TGG + chr3_2:5532997-5533016 Msa0392410:CDS 45.0%
ATGGGATCCTAACACTTGCT+AGG + chr3_2:5533028-5533047 Msa0392410:CDS 45.0%
! TGGGATCCTAACACTTGCTA+GGG + chr3_2:5533029-5533048 Msa0392410:CDS 45.0%
AAAGCCGGGGAACTATAATG+CGG + chr3_2:5533283-5533302 Msa0392410:intron 45.0%
TTAGCCGCATTATAGTTCCC+CGG - chr3_2:5533290-5533309 None:intergenic 45.0%
CCTCCAAATTCAAGAGCAAG+GGG + chr3_2:5533465-5533484 Msa0392410:CDS 45.0%
! AATTATGCATCTGGAGCAGC+AGG + chr3_2:5533510-5533529 Msa0392410:CDS 45.0%
AGGGCAGATGCAAAAGCTTT+AGG - chr3_2:5533870-5533889 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + chr3_2:5535045-5535064 Msa0392410:intron 45.0%
! GGGGAAAGATTTTCCCACTA+TGG + chr3_2:5535422-5535441 Msa0392410:intron 45.0%
! GTCCAACTTTTACCTACAGC+TGG + chr3_2:5535449-5535468 Msa0392410:intron 45.0%
TGCCAGCTGTAGGTAAAAGT+TGG - chr3_2:5535454-5535473 None:intergenic 45.0%
TAACGTGAAATAAGGGGGTG+TGG - chr3_2:5535585-5535604 None:intergenic 45.0%
AACTGGCGAAGATGTATGGT+GGG - chr3_2:5535837-5535856 None:intergenic 45.0%
AAACTGGCGAAGATGTATGG+TGG - chr3_2:5535838-5535857 None:intergenic 45.0%
AGGAAACTGGCGAAGATGTA+TGG - chr3_2:5535841-5535860 None:intergenic 45.0%
TGCCGAAAATTTCACAGCCA+TGG - chr3_2:5535985-5536004 None:intergenic 45.0%
ATAAAACCCGTGCAATGCAC+GGG + chr3_2:5536287-5536306 Msa0392410:intron 45.0%
! GGGGAAAGATTTTCCCACTA+TGG - chr3_2:5535422-5535441 None:intergenic 45.0%
AATTTGGGTGGCATTTAGGG+TGG - chr3_2:5538625-5538644 None:intergenic 45.0%
TTCATAGAAACGGCCCTGTA+TGG - chr3_2:5538738-5538757 None:intergenic 45.0%
GATTTGTCACTCCTTCGTTG+TGG + chr3_2:5538928-5538947 Msa0392410:intron 45.0%
TTTCTCCTTTCCCACAACGA+AGG - chr3_2:5538942-5538961 None:intergenic 45.0%
TTAAAACCCAAGGTCCAGCT+TGG + chr3_2:5539192-5539211 Msa0392410:intron 45.0%
AGCTTATATGGAAAGAGGGC+CGG - chr3_2:5539243-5539262 None:intergenic 45.0%
ACTTTCACAAGTGCCTGTGT+CGG + chr3_2:5539283-5539302 Msa0392410:intron 45.0%
TCGAGTTTATCTACCGACAC+AGG - chr3_2:5539299-5539318 None:intergenic 45.0%
AGGGTTTGATGTGGTAGACA+AGG + chr3_2:5539530-5539549 Msa0392410:intron 45.0%
GGGTTTGATGTGGTAGACAA+GGG + chr3_2:5539531-5539550 Msa0392410:intron 45.0%
!! TGTGGTGTTGGCAGAAACAA+TGG + chr3_2:5539558-5539577 Msa0392410:CDS 45.0%
!! TTATTATATTATCAAATATT+AGG + chr3_2:5535515-5535534 Msa0392410:intron 5.0%
!! ATTTGAATTAAATATAAATT+AGG - chr3_2:5536139-5536158 None:intergenic 5.0%
!! ATAAACATTAAAAAAAATAT+AGG - chr3_2:5536425-5536444 None:intergenic 5.0%
!!! ATTTTTTTTAATGTTTATTA+AGG + chr3_2:5536427-5536446 Msa0392410:intron 5.0%
!! TCATTATAAATTAAAAAAAT+AGG - chr3_2:5536671-5536690 None:intergenic 5.0%
!!! ATCAATTAATTTTTAAAAAT+AGG + chr3_2:5536865-5536884 Msa0392410:intron 5.0%
!!! TCATTTTTTTTAATATTTAT+AGG + chr3_2:5537790-5537809 Msa0392410:intron 5.0%
!!! ATATTATTATTTTAAATCAA+TGG - chr3_2:5538552-5538571 None:intergenic 5.0%
!! TTAAAATAATAATATATCAA+TGG + chr3_2:5538557-5538576 Msa0392410:intron 5.0%
TGTGGGAAGTCGATGCCATA+AGG - chr3_2:5533066-5533085 None:intergenic 50.0%
!! TATGGCATCGACTTCCCACA+AGG + chr3_2:5533066-5533085 Msa0392410:CDS 50.0%
ATCGACGAAGGTTCGACCAT+TGG - chr3_2:5533109-5533128 None:intergenic 50.0%
CGAACCTTCGTCGATGCATT+AGG + chr3_2:5533114-5533133 Msa0392410:CDS 50.0%
CCCCTTGCTCTTGAATTTGG+AGG - chr3_2:5533468-5533487 None:intergenic 50.0%
AGGGGTTTGGACCTTCTTAG+AGG + chr3_2:5533483-5533502 Msa0392410:CDS 50.0%
AGAGGAAACAGGCAGTAACC+TGG + chr3_2:5533539-5533558 Msa0392410:CDS 50.0%
! GCGAGCGTAGTCTTGAAGAA+GGG - chr3_2:5533889-5533908 None:intergenic 50.0%
TGACCAGATAACTCCTCGGT+TGG + chr3_2:5534328-5534347 Msa0392410:intron 50.0%
AACTAAGTAACCGCCAACCG+AGG - chr3_2:5534344-5534363 None:intergenic 50.0%
TATCAATGGAGGGCAGCTTC+CGG + chr3_2:5534598-5534617 Msa0392410:CDS 50.0%
CGTCAGACTCGTGTCAAACT+AGG - chr3_2:5535168-5535187 None:intergenic 50.0%
AGGTTATAGCTGCCAGCTGT+AGG - chr3_2:5535464-5535483 None:intergenic 50.0%
! GCGAAGATGTATGGTGGGAA+TGG - chr3_2:5535832-5535851 None:intergenic 50.0%
! GTGGCATTTAGGGTGGATAG+GGG - chr3_2:5538618-5538637 None:intergenic 50.0%
! GGTGGCATTTAGGGTGGATA+GGG - chr3_2:5538619-5538638 None:intergenic 50.0%
TCACTCCTTCGTTGTGGGAA+AGG + chr3_2:5538934-5538953 Msa0392410:intron 50.0%
TGAGCACCTTGCATTCTCCA+AGG + chr3_2:5539216-5539235 Msa0392410:intron 50.0%
ACCTTGCATTCTCCAAGGTC+CGG + chr3_2:5539221-5539240 Msa0392410:intron 50.0%
TGCTTTCCACCCAACTGAGT+TGG + chr3_2:5539644-5539663 Msa0392410:CDS 50.0%
! TCAGGTTTTGCCACGGCAAC+CGG + chr3_2:5532942-5532961 Msa0392410:CDS 55.0%
!! CATGGCACTTGTTGTCCCTC+CGG - chr3_2:5532964-5532983 None:intergenic 55.0%
TCGACCATTGGTGAAGCGAC+CGG - chr3_2:5533097-5533116 None:intergenic 55.0%
GCAGGCATCAGAGAGGAAAC+AGG + chr3_2:5533528-5533547 Msa0392410:CDS 55.0%
! GGCGAGCGTAGTCTTGAAGA+AGG - chr3_2:5533890-5533909 None:intergenic 55.0%
CCAGATAACTCCTCGGTTGG+CGG + chr3_2:5534331-5534350 Msa0392410:intron 55.0%
ATCAATGGAGGGCAGCTTCC+GGG + chr3_2:5534599-5534618 Msa0392410:CDS 55.0%
! AGGTGGCATTTAGGGTGGGT+AGG + chr3_2:5535401-5535420 Msa0392410:intron 55.0%
! GGTGGCATTTAGGGTGGGTA+GGG + chr3_2:5535402-5535421 Msa0392410:intron 55.0%
! GTGGCATTTAGGGTGGGTAG+GGG + chr3_2:5535403-5535422 Msa0392410:intron 55.0%
CTATCACCCGTGCATTGCAC+GGG - chr3_2:5536296-5536315 None:intergenic 55.0%
CCTATCACCCGTGCATTGCA+CGG - chr3_2:5536297-5536316 None:intergenic 55.0%
! GGGTGGCATTTAGGGTGGAT+AGG - chr3_2:5538620-5538639 None:intergenic 55.0%
GCTCAACCAAGCTGGACCTT+GGG - chr3_2:5539201-5539220 None:intergenic 55.0%
TGCTCAACCAAGCTGGACCT+TGG - chr3_2:5539202-5539221 None:intergenic 55.0%
! TGCAAGGTGCTCAACCAAGC+TGG - chr3_2:5539209-5539228 None:intergenic 55.0%
GTGGTAGACAAGGGATGCTG+TGG + chr3_2:5539540-5539559 Msa0392410:CDS 55.0%
GACAAGGGATGCTGTGGTGT+TGG + chr3_2:5539546-5539565 Msa0392410:CDS 55.0%
TGTTGGCCAACTCAGTTGGG+TGG - chr3_2:5539653-5539672 None:intergenic 55.0%
! GTTTTGCCACGGCAACCGGA+GGG + chr3_2:5532946-5532965 Msa0392410:CDS 60.0%
GACTTCCCACAAGGTCCCAC+CGG + chr3_2:5533075-5533094 Msa0392410:CDS 60.0%
CCATTGGTGAAGCGACCGGT+GGG - chr3_2:5533093-5533112 None:intergenic 60.0%
ACCATTGGTGAAGCGACCGG+TGG - chr3_2:5533094-5533113 None:intergenic 60.0%
TGGAGCAGCAGGCATCAGAG+AGG + chr3_2:5533521-5533540 Msa0392410:CDS 60.0%
CCGCCAACCGAGGAGTTATC+TGG - chr3_2:5534334-5534353 None:intergenic 60.0%
CCGTGCAATGCACGGGTGAT+AGG + chr3_2:5536294-5536313 Msa0392410:intron 60.0%
GCCGGACCTTGGAGAATGCA+AGG - chr3_2:5539225-5539244 None:intergenic 60.0%
ATGGAAAGAGGGCCGGACCT+TGG - chr3_2:5539236-5539255 None:intergenic 60.0%
! GGTTTTGCCACGGCAACCGG+AGG + chr3_2:5532945-5532964 Msa0392410:CDS 65.0%
TGTTGTCCCTCCGGTTGCCG+TGG - chr3_2:5532955-5532974 None:intergenic 65.0%
AGCGACCGGTGGGACCTTGT+GGG - chr3_2:5533083-5533102 None:intergenic 65.0%
AAGCGACCGGTGGGACCTTG+TGG - chr3_2:5533084-5533103 None:intergenic 65.0%
CCCACCGGTCGCTTCACCAA+TGG + chr3_2:5533090-5533109 Msa0392410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5532852 5539928 5532852 ID=Msa0392410;Name=Msa0392410
chr3_2 mRNA 5532852 5539928 5532852 ID=Msa0392410-mRNA-1;Parent=Msa0392410;Name=Msa0392410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=25|0.75|0.8|1|1|1|5|179|368
chr3_2 exon 5532852 5533135 5532852 ID=Msa0392410-mRNA-1:exon:1364;Parent=Msa0392410-mRNA-1
chr3_2 exon 5533436 5533560 5533436 ID=Msa0392410-mRNA-1:exon:1365;Parent=Msa0392410-mRNA-1
chr3_2 exon 5533669 5533921 5533669 ID=Msa0392410-mRNA-1:exon:1366;Parent=Msa0392410-mRNA-1
chr3_2 exon 5534438 5534689 5534438 ID=Msa0392410-mRNA-1:exon:1367;Parent=Msa0392410-mRNA-1
chr3_2 exon 5539532 5539928 5539532 ID=Msa0392410-mRNA-1:exon:1368;Parent=Msa0392410-mRNA-1
chr3_2 five_prime_UTR 5532852 5532876 5532852 ID=Msa0392410-mRNA-1:five_prime_utr;Parent=Msa0392410-mRNA-1
chr3_2 CDS 5532877 5533135 5532877 ID=Msa0392410-mRNA-1:cds;Parent=Msa0392410-mRNA-1
chr3_2 CDS 5533436 5533560 5533436 ID=Msa0392410-mRNA-1:cds;Parent=Msa0392410-mRNA-1
chr3_2 CDS 5533669 5533921 5533669 ID=Msa0392410-mRNA-1:cds;Parent=Msa0392410-mRNA-1
chr3_2 CDS 5534438 5534689 5534438 ID=Msa0392410-mRNA-1:cds;Parent=Msa0392410-mRNA-1
chr3_2 CDS 5539532 5539749 5539532 ID=Msa0392410-mRNA-1:cds;Parent=Msa0392410-mRNA-1
chr3_2 three_prime_UTR 5539750 5539928 5539750 ID=Msa0392410-mRNA-1:three_prime_utr;Parent=Msa0392410-mRNA-1
Gene Sequence

>Msa0392410

ATGAAGCATTTTATTTTCACATTCACGTGTATCTGGCTGAGCCTAAGTCCTACAAAATGTTTGTCTCAGGTTTTGCCACGGCAACCGGAGGGACAACAAGTGCCATGTTTCTTCATATTTGGCGACTCATTGGTTGATAATGGAAACAACAATGGGATCCTAACACTTGCTAGGGCTAATTATCGACCTTATGGCATCGACTTCCCACAAGGTCCCACCGGTCGCTTCACCAATGGTCGAACCTTCGTCGATGCATTAGCTCAACTTTTGGGTTTTCGAGCATATATTCCTCCAAATTCAAGAGCAAGGGGTTTGGACCTTCTTAGAGGAGTCAATTATGCATCTGGAGCAGCAGGCATCAGAGAGGAAACAGGCAGTAACCTGGGGGCTCATACATCAATGACTGAGCAAGTGACAAACTTTGGAAACACAGTGCAACAAATGAGAAGGTTCTTTAGAGGAGACAATGATGCACTTAATAGCTACCTAAGCAAATGCATATATTATTCAGGGTTGGGAAGCAATGATTACCTGAACAACTATTTCATGACTGATTTTTATTCAACTAGCACTCAGTACACACCTAAAGCTTTTGCATCTGCCCTTCTTCAAGACTACGCTCGCCAACTATCTGTGAAATTACATGGGGCAAGAAAAGTGATCGTTACAGCAGTTGGTCAAATTGGGTGCATACCATATGAATTAGCACGTATTAATGGTAACATCACCGGATGCAATGAGAAGATTAACAATGCCATCCAGTATTTTAACTCAGGTCTTAAGCAATTAGTTCAGAATATCAATGGAGGGCAGCTTCCGGGAGCAAAGTTTGTGTTTTTGGACTTTTATCAAAGCAGTGCAGATCTAGCATTAAATGGAAAATCAATGGGGTTTGATGTGGTAGACAAGGGATGCTGTGGTGTTGGCAGAAACAATGGACAAATCACTTGCCTTCCATTACAACAAGTATGTGAAGATCGTGGGAAATATTTGTTTTGGGATGCTTTCCACCCAACTGAGTTGGCCAACATTTTACTAGCCAAAGCATCATACAGTTCACAATCATACACTTCTCCCATTAATATCCAACAATTGGCAATGCTTTAG
Protein sequence

>Msa0392410

MKHFIFTFTCIWLSLSPTKCLSQVLPRQPEGQQVPCFFIFGDSLVDNGNNNGILTLARANYRPYGIDFPQGPTGRFTNGRTFVDALAQLLGFRAYIPPNSRARGLDLLRGVNYASGAAGIREETGSNLGAHTSMTEQVTNFGNTVQQMRRFFRGDNDALNSYLSKCIYYSGLGSNDYLNNYFMTDFYSTSTQYTPKAFASALLQDYARQLSVKLHGARKVIVTAVGQIGCIPYELARINGNITGCNEKINNAIQYFNSGLKQLVQNINGGQLPGAKFVFLDFYQSSADLALNGKSMGFDVVDKGCCGVGRNNGQITCLPLQQVCEDRGKYLFWDAFHPTELANILLAKASYSSQSYTSPINIQQLAML*