AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0487560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487560 MtrunA17_Chr3g0077581 98.108 370 6 1 1 369 1 370 0.0 746
Msa0487560 MtrunA17_Chr2g0285061 56.471 340 144 3 32 369 28 365 1.61e-131 380
Msa0487560 MtrunA17_Chr8g0380041 56.932 339 141 4 33 369 28 363 1.45e-129 375
Msa0487560 MtrunA17_Chr3g0086641 54.867 339 148 4 33 369 35 370 1.13e-126 369
Msa0487560 MtrunA17_Chr3g0077571 47.727 352 174 7 20 369 14 357 1.19e-110 327
Msa0487560 MtrunA17_Chr3g0131321 42.077 366 202 6 8 367 6 367 4.81e-99 298
Msa0487560 MtrunA17_Chr8g0380031 45.428 339 170 8 33 369 81 406 1.18e-94 288
Msa0487560 MtrunA17_Chr2g0284951 44.970 338 169 6 33 367 30 353 1.47e-90 276
Msa0487560 MtrunA17_Chr2g0284991 43.491 338 179 5 33 367 30 358 3.78e-90 276
Msa0487560 MtrunA17_Chr2g0284921 43.188 345 180 8 30 369 28 361 1.93e-88 271
Msa0487560 MtrunA17_Chr4g0017431 40.563 355 200 6 19 369 16 363 8.10e-88 269
Msa0487560 MtrunA17_Chr3g0085881 44.807 337 169 9 33 367 30 351 8.15e-88 269
Msa0487560 MtrunA17_Chr2g0284941 43.195 338 159 6 33 367 30 337 1.34e-85 263
Msa0487560 MtrunA17_Chr2g0285001 42.059 340 182 7 33 367 30 359 3.49e-84 260
Msa0487560 MtrunA17_Chr4g0068441 40.469 341 191 9 32 366 31 365 8.23e-74 233
Msa0487560 MtrunA17_Chr2g0294311 40.571 350 186 10 32 366 28 370 2.13e-73 232
Msa0487560 MtrunA17_Chr2g0294301 41.071 336 184 11 38 366 37 365 3.34e-70 224
Msa0487560 MtrunA17_Chr7g0275021 34.973 366 230 8 7 369 6 366 5.94e-69 221
Msa0487560 MtrunA17_Chr5g0434621 40.683 322 177 10 38 354 27 339 1.41e-68 219
Msa0487560 MtrunA17_Chr1g0182811 38.938 339 190 9 37 366 34 364 1.75e-66 214
Msa0487560 MtrunA17_Chr8g0374101 39.645 338 192 9 38 366 39 373 4.26e-66 214
Msa0487560 MtrunA17_Chr5g0396511 36.283 339 200 9 38 368 48 378 2.19e-65 212
Msa0487560 MtrunA17_Chr7g0275011 35.714 364 220 7 9 369 14 366 1.13e-64 210
Msa0487560 MtrunA17_Chr1g0189901 37.202 336 203 8 37 368 32 363 5.36e-63 205
Msa0487560 MtrunA17_Chr1g0189931 34.146 369 230 9 4 368 5 364 5.69e-63 205
Msa0487560 MtrunA17_Chr3g0092131 40.506 316 176 9 38 348 25 333 1.35e-62 204
Msa0487560 MtrunA17_Chr7g0274991 35.119 336 211 7 37 369 34 365 4.50e-62 203
Msa0487560 MtrunA17_Chr1g0156911 33.243 367 223 9 1 357 1 355 1.26e-61 201
Msa0487560 MtrunA17_Chr1g0156931 33.043 345 213 8 4 343 13 344 1.85e-60 199
Msa0487560 MtrunA17_Chr4g0060811 38.413 315 184 7 38 348 29 337 1.72e-59 196
Msa0487560 MtrunA17_Chr3g0142921 35.542 332 195 10 29 349 29 352 8.04e-59 194
Msa0487560 MtrunA17_Chr7g0275001 34.706 340 216 5 33 369 22 358 8.20e-59 194
Msa0487560 MtrunA17_Chr4g0008851 33.424 368 224 10 8 369 14 366 9.47e-59 194
Msa0487560 MtrunA17_Chr5g0444401 35.920 348 202 11 31 367 23 360 1.86e-58 193
Msa0487560 MtrunA17_Chr3g0099161 34.758 351 208 9 30 369 86 426 2.43e-58 195
Msa0487560 MtrunA17_Chr3g0099151 34.188 351 211 9 30 369 81 422 2.51e-58 195
Msa0487560 MtrunA17_Chr7g0215961 33.973 365 219 8 8 369 7 352 5.90e-58 192
Msa0487560 MtrunA17_Chr1g0156901 33.750 320 199 7 27 341 41 352 6.51e-57 189
Msa0487560 MtrunA17_Chr6g0457921 34.203 345 218 8 30 369 22 362 2.33e-56 188
Msa0487560 MtrunA17_Chr5g0438621 37.500 328 179 12 33 348 27 340 6.14e-56 186
Msa0487560 MtrunA17_Chr3g0142941 33.538 325 203 8 22 341 33 349 1.06e-55 186
Msa0487560 MtrunA17_Chr2g0320671 36.364 319 193 8 34 348 28 340 1.71e-55 185
Msa0487560 MtrunA17_Chr3g0085231 34.808 339 197 9 34 367 29 348 3.73e-55 184
Msa0487560 MtrunA17_Chr3g0099231 32.951 349 210 10 30 366 22 358 5.27e-55 185
Msa0487560 MtrunA17_Chr1g0189891 36.499 337 200 10 37 369 30 356 3.49e-54 182
Msa0487560 MtrunA17_Chr5g0420811 33.528 343 203 10 30 366 27 350 3.65e-54 182
Msa0487560 MtrunA17_Chr5g0405821 36.070 341 190 13 29 355 36 362 2.70e-53 180
Msa0487560 MtrunA17_Chr1g0156891 33.036 336 211 8 12 341 19 346 5.50e-53 179
Msa0487560 MtrunA17_Chr1g0156921 32.615 325 202 10 24 341 31 345 6.16e-53 179
Msa0487560 MtrunA17_Chr5g0405831 34.278 353 206 11 5 347 17 353 8.80e-53 179
Msa0487560 MtrunA17_Chr2g0330781 34.259 324 198 8 34 350 29 344 1.02e-52 178
Msa0487560 MtrunA17_Chr8g0371491 35.077 325 196 9 29 346 29 345 1.56e-52 178
Msa0487560 MtrunA17_Chr8g0341001 34.688 320 198 8 34 348 30 343 3.39e-52 177
Msa0487560 MtrunA17_Chr4g0027521 34.154 325 195 10 34 348 25 340 8.12e-51 173
Msa0487560 MtrunA17_Chr2g0283191 31.928 332 203 8 33 348 35 359 1.71e-49 170
Msa0487560 MtrunA17_Chr5g0438631 33.750 320 201 8 34 348 26 339 1.72e-48 167
Msa0487560 MtrunA17_Chr3g0105401 33.535 331 205 10 33 357 25 346 1.85e-47 164
Msa0487560 MtrunA17_Chr5g0432101 33.746 323 192 11 38 349 35 346 5.16e-47 164
Msa0487560 MtrunA17_Chr5g0438641 32.087 321 208 8 33 349 29 343 5.31e-46 160
Msa0487560 MtrunA17_Chr3g0120861 31.889 323 210 8 30 348 32 348 2.31e-45 159
Msa0487560 MtrunA17_Chr8g0371471 28.242 347 238 8 8 349 12 352 1.38e-44 157
Msa0487560 MtrunA17_Chr5g0437421 33.540 322 191 7 33 341 29 340 1.59e-44 157
Msa0487560 MtrunA17_Chr6g0459921 33.740 246 160 3 124 369 119 361 6.03e-44 155
Msa0487560 MtrunA17_Chr8g0349321 31.135 379 223 14 4 366 6 362 6.67e-44 155
Msa0487560 MtrunA17_Chr8g0370951 31.549 355 211 12 30 366 25 365 7.13e-44 155
Msa0487560 MtrunA17_Chr8g0349341 30.053 376 227 13 4 366 10 362 3.52e-43 153
Msa0487560 MtrunA17_Chr8g0371481 27.966 354 242 9 1 349 8 353 1.14e-42 152
Msa0487560 MtrunA17_Chr4g0046151 28.775 351 231 9 3 343 7 348 3.19e-42 151
Msa0487560 MtrunA17_Chr6g0455661 33.600 250 159 4 120 369 230 472 5.73e-42 152
Msa0487560 MtrunA17_Chr6g0455661 59.000 100 40 1 35 134 30 128 1.27e-29 119
Msa0487560 MtrunA17_Chr2g0301641 30.294 340 218 11 37 366 44 374 1.82e-38 142
Msa0487560 MtrunA17_Chr1g0157001 30.058 346 210 8 41 367 41 373 3.53e-38 140
Msa0487560 MtrunA17_Chr8g0349301 31.402 328 192 12 1 318 3 307 7.68e-37 135
Msa0487560 MtrunA17_Chr8g0344931 28.846 364 236 11 10 366 11 358 3.66e-36 134
Msa0487560 MtrunA17_Chr8g0344941 28.615 325 217 8 36 353 41 357 6.96e-36 134
Msa0487560 MtrunA17_Chr8g0349331 27.926 376 203 13 4 366 10 330 3.62e-32 123
Msa0487560 MtrunA17_Chr1g0178931 30.794 315 184 11 37 341 38 328 1.43e-31 122
Msa0487560 MtrunA17_Chr4g0027571 36.364 176 108 3 173 347 37 209 6.91e-31 117
Msa0487560 MtrunA17_Chr1g0178941 29.781 319 190 10 37 341 41 339 2.68e-30 119
Msa0487560 MtrunA17_Chr8g0370981 26.478 389 226 11 30 367 38 417 4.78e-30 119
Msa0487560 MtrunA17_Chr8g0370961 30.242 248 151 8 131 367 7 243 4.98e-28 110
Msa0487560 MtrunA17_Chr7g0254461 27.941 340 206 13 33 344 40 368 9.01e-28 112
Msa0487560 MtrunA17_Chr7g0226911 26.263 396 242 10 4 365 3 382 2.03e-27 111
Msa0487560 MtrunA17_Chr2g0317271 27.513 378 227 14 3 361 6 355 2.57e-27 110
Msa0487560 MtrunA17_Chr2g0317261 27.056 377 228 14 4 361 7 355 1.75e-26 108
Msa0487560 MtrunA17_Chr8g0381581 27.596 337 206 12 35 344 39 364 6.71e-26 107
Msa0487560 MtrunA17_Chr0c01g0489581 27.056 377 228 14 4 361 7 355 1.12e-25 106
Msa0487560 MtrunA17_Chr5g0440501 25.703 249 168 7 130 367 7 249 1.73e-25 103
Msa0487560 MtrunA17_Chr0c01g0489571 27.056 377 228 14 4 361 7 355 3.00e-25 105
Msa0487560 MtrunA17_Chr1g0160011 26.567 335 213 10 35 347 39 362 3.02e-25 105
Msa0487560 MtrunA17_Chr1g0198381 28.165 316 191 12 37 341 3 293 4.05e-25 103
Msa0487560 MtrunA17_Chr7g0229581 38.971 136 81 2 213 347 8 142 7.03e-25 99.4
Msa0487560 MtrunA17_Chr1g0159981 26.571 350 221 11 35 360 45 382 7.94e-25 104
Msa0487560 MtrunA17_Chr1g0160031 26.786 336 211 11 35 347 38 361 2.22e-24 102
Msa0487560 MtrunA17_Chr2g0285041 40.833 120 69 2 89 207 1 119 3.53e-24 97.1
Msa0487560 MtrunA17_Chr7g0226931 25.323 387 232 10 5 348 7 379 3.97e-24 102
Msa0487560 MtrunA17_Chr7g0229591 34.659 176 107 5 34 206 28 198 4.11e-24 98.6
Msa0487560 MtrunA17_Chr6g0450731 24.868 378 243 11 1 363 6 357 6.80e-24 101
Msa0487560 MtrunA17_Chr1g0159991 26.377 345 228 10 35 360 35 372 1.44e-23 100
Msa0487560 MtrunA17_Chr7g0266061 28.302 318 189 12 37 341 43 334 1.57e-23 100
Msa0487560 MtrunA17_Chr1g0159971 26.857 350 221 10 38 363 49 387 2.54e-23 100
Msa0487560 MtrunA17_Chr1g0198351 28.528 326 176 13 37 341 44 333 4.90e-23 98.6
Msa0487560 MtrunA17_Chr6g0450721 25.543 368 219 13 3 349 8 341 1.15e-22 97.8
Msa0487560 MtrunA17_Chr6g0450701 27.616 344 203 11 33 349 36 360 2.14e-22 97.4
Msa0487560 MtrunA17_Chr3g0104821 26.706 337 208 13 38 349 46 368 6.61e-22 95.9
Msa0487560 MtrunA17_Chr8g0347751 26.870 361 221 11 38 369 38 384 1.03e-21 95.5
Msa0487560 MtrunA17_Chr7g0271551 27.083 336 215 12 38 360 38 356 1.16e-21 95.1
Msa0487560 MtrunA17_Chr6g0450711 27.059 340 206 11 35 349 121 443 1.75e-21 95.5
Msa0487560 MtrunA17_Chr1g0160101 26.254 339 206 10 35 344 41 364 2.67e-21 94.4
Msa0487560 MtrunA17_Chr7g0275291 25.210 357 220 11 38 365 35 373 2.92e-21 94.0
Msa0487560 MtrunA17_Chr6g0469511 48.421 95 46 2 34 125 28 122 2.95e-21 89.0
Msa0487560 MtrunA17_Chr7g0273101 26.453 344 207 12 35 348 28 355 4.68e-21 93.6
Msa0487560 MtrunA17_Chr7g0226941 25.905 359 228 10 15 348 14 359 8.99e-21 92.8
Msa0487560 MtrunA17_Chr2g0284931 28.163 245 145 8 128 369 4 220 1.53e-20 89.0
Msa0487560 MtrunA17_Chr2g0301581 28.485 330 194 14 38 349 36 341 4.02e-20 90.5
Msa0487560 MtrunA17_Chr2g0301541 28.182 330 195 14 38 349 36 341 1.22e-19 89.0
Msa0487560 MtrunA17_Chr4g0027561 44.681 94 49 2 34 124 28 121 1.59e-19 84.3
Msa0487560 MtrunA17_Chr2g0283511 25.672 335 207 13 41 348 36 355 1.92e-19 89.0
Msa0487560 MtrunA17_Chr8g0352901 26.685 356 220 11 35 363 27 368 2.15e-19 88.6
Msa0487560 MtrunA17_Chr1g0189921 45.918 98 51 2 30 125 25 122 2.44e-19 84.0
Msa0487560 MtrunA17_Chr3g0112821 24.847 326 220 11 38 349 32 346 3.18e-18 85.1
Msa0487560 MtrunA17_Chr2g0285051 60.317 63 25 0 28 90 28 90 8.45e-18 78.6
Msa0487560 MtrunA17_Chr2g0283501 25.344 363 234 12 16 350 3 356 2.39e-17 82.4
Msa0487560 MtrunA17_Chr8g0370971 39.655 116 63 2 30 138 32 147 5.13e-17 77.8
Msa0487560 MtrunA17_Chr2g0283481 25.373 335 212 13 38 348 49 369 8.57e-17 81.3
Msa0487560 MtrunA17_Chr3g0093031 24.316 329 223 11 38 349 32 351 1.25e-16 80.5
Msa0487560 MtrunA17_Chr2g0283531 26.087 368 232 15 6 349 3 354 1.59e-16 80.1
Msa0487560 MtrunA17_Chr3g0112691 26.807 332 209 16 38 349 32 349 3.77e-16 79.0
Msa0487560 MtrunA17_Chr2g0321991 38.843 121 64 5 3 119 5 119 4.83e-16 73.9
Msa0487560 MtrunA17_Chr4g0057991 22.881 354 239 12 5 341 13 349 5.31e-16 78.6
Msa0487560 MtrunA17_Chr1g0189911 29.452 146 98 5 226 368 3 146 2.73e-14 69.7
Msa0487560 MtrunA17_Chr1g0191461 24.207 347 210 11 35 348 30 356 7.21e-14 72.0
Msa0487560 MtrunA17_Chr2g0308201 53.571 56 26 0 34 89 33 88 1.05e-13 66.2
Msa0487560 MtrunA17_Chr6g0469521 34.400 125 80 2 210 333 29 152 2.51e-13 67.0
Msa0487560 MtrunA17_Chr7g0228261 38.372 86 52 1 285 369 7 92 3.21e-13 65.1
Msa0487560 MtrunA17_Chr8g0339251 26.460 291 191 9 35 318 27 301 7.95e-13 68.9
Msa0487560 MtrunA17_Chr2g0301571 27.740 292 168 14 76 349 31 297 1.90e-12 67.4
Msa0487560 MtrunA17_Chr1g0178951 40.909 88 46 2 37 120 18 103 3.16e-12 62.8
Msa0487560 MtrunA17_Chr4g0018571 34.228 149 95 3 201 347 18 165 3.47e-12 64.7
Msa0487560 MtrunA17_Chr3g0104831 25.564 266 164 11 106 349 34 287 1.51e-11 64.7
Msa0487560 MtrunA17_Chr2g0301551 27.740 292 168 14 76 349 31 297 3.31e-11 63.9
Msa0487560 MtrunA17_Chr4g0018561 57.692 52 21 1 34 84 28 79 3.50e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487560 AT1G33811.1 71.676 346 94 3 28 369 25 370 0.0 508
Msa0487560 AT4G18970.1 55.030 338 148 3 34 369 26 361 2.02e-124 363
Msa0487560 AT4G18970.2 55.193 337 147 3 35 369 27 361 4.54e-123 361
Msa0487560 AT5G45670.1 54.599 337 149 3 35 369 28 362 6.79e-122 356
Msa0487560 AT1G29670.1 50.276 362 170 6 12 369 8 363 3.30e-121 355
Msa0487560 AT1G29670.2 50.276 362 170 6 12 369 76 431 1.69e-120 355
Msa0487560 AT1G29660.1 51.917 339 158 4 33 369 29 364 5.83e-115 339
Msa0487560 AT1G71691.2 47.774 337 169 6 34 369 53 383 2.65e-105 315
Msa0487560 AT5G15720.1 49.412 340 163 8 35 369 29 364 9.06e-102 305
Msa0487560 AT1G71250.1 46.023 352 181 6 24 369 25 373 3.52e-100 301
Msa0487560 AT5G08460.1 44.282 341 181 6 35 369 48 385 3.70e-93 284
Msa0487560 AT2G19010.1 42.136 337 180 6 31 367 25 346 1.52e-90 276
Msa0487560 AT2G19010.2 42.136 337 180 6 31 367 55 376 8.90e-90 275
Msa0487560 AT2G19050.1 42.183 339 181 6 31 369 26 349 3.51e-85 262
Msa0487560 AT4G30140.1 42.899 338 174 7 30 366 27 346 3.63e-85 262
Msa0487560 AT2G19060.1 41.618 346 187 6 24 368 18 349 3.75e-84 259
Msa0487560 AT1G71691.1 43.509 285 154 6 86 369 4 282 8.58e-77 238
Msa0487560 AT5G15720.3 44.369 293 155 7 82 369 44 333 1.47e-75 237
Msa0487560 AT5G15720.2 48.507 268 130 7 35 298 29 292 3.82e-71 225
Msa0487560 AT2G23540.1 39.142 373 212 9 6 366 15 384 3.84e-71 227
Msa0487560 AT1G71691.3 46.038 265 137 5 34 298 53 311 6.08e-71 224
Msa0487560 AT3G50400.1 40.643 342 190 9 38 369 36 374 3.58e-68 219
Msa0487560 AT5G37690.1 38.938 339 197 8 13 348 4 335 1.89e-67 217
Msa0487560 AT2G19050.2 43.130 262 139 3 31 292 26 277 3.34e-67 214
Msa0487560 AT4G10950.2 36.728 324 197 6 28 348 63 381 3.24e-65 213
Msa0487560 AT4G28780.1 35.121 373 228 10 1 369 1 363 1.61e-64 209
Msa0487560 AT3G04290.1 36.499 337 207 6 36 369 29 361 4.60e-63 206
Msa0487560 AT4G10950.1 35.802 324 196 6 28 348 63 377 1.90e-62 205
Msa0487560 AT5G37690.2 38.053 339 192 9 13 348 4 327 3.23e-62 203
Msa0487560 AT5G22810.1 35.244 349 214 8 8 348 3 347 1.73e-61 201
Msa0487560 AT1G74460.1 40.379 317 175 10 38 348 25 333 3.83e-61 201
Msa0487560 AT5G41890.1 34.974 386 209 10 1 366 9 372 6.28e-61 201
Msa0487560 AT5G33370.1 33.807 352 222 7 20 366 14 359 1.73e-60 199
Msa0487560 AT5G18430.1 34.731 334 207 6 36 363 28 356 8.94e-60 197
Msa0487560 AT1G75890.2 35.159 347 212 10 8 348 19 358 1.12e-59 197
Msa0487560 AT1G75890.3 35.159 347 212 10 8 348 48 387 1.90e-59 197
Msa0487560 AT5G55050.1 33.237 346 209 10 34 366 37 373 4.18e-57 191
Msa0487560 AT1G75890.1 33.983 359 213 10 8 348 19 371 9.68e-57 190
Msa0487560 AT1G75880.2 33.807 352 219 11 5 349 20 364 1.94e-54 184
Msa0487560 AT1G75880.1 33.807 352 220 10 5 349 20 365 2.19e-54 183
Msa0487560 AT3G53100.1 33.742 326 204 8 28 348 21 339 8.89e-52 176
Msa0487560 AT3G14820.1 32.615 325 200 9 34 349 30 344 1.33e-51 176
Msa0487560 AT5G03820.1 34.268 321 199 8 34 348 31 345 6.44e-51 174
Msa0487560 AT5G03820.2 34.268 321 199 8 34 348 59 373 1.71e-50 174
Msa0487560 AT5G42170.1 32.399 321 204 8 27 343 41 352 2.82e-50 172
Msa0487560 AT1G59406.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0487560 AT1G59030.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0487560 AT1G58725.1 32.399 321 202 10 28 343 22 332 4.83e-50 171
Msa0487560 AT2G04570.1 33.642 324 201 9 33 350 25 340 8.58e-50 171
Msa0487560 AT1G20120.1 34.056 323 195 10 35 349 77 389 2.96e-49 171
Msa0487560 AT3G16370.1 34.462 325 202 9 31 350 25 343 3.35e-49 169
Msa0487560 AT5G03810.1 33.438 320 202 8 34 348 28 341 1.27e-48 168
Msa0487560 AT1G75900.1 30.792 341 213 10 10 341 19 345 1.45e-48 168
Msa0487560 AT2G03980.2 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0487560 AT2G03980.3 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0487560 AT2G03980.1 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0487560 AT2G03980.4 32.938 337 200 13 31 356 38 359 8.33e-48 166
Msa0487560 AT4G16230.1 44.498 209 108 6 31 235 25 229 3.09e-47 161
Msa0487560 AT1G73610.1 33.654 312 184 9 34 341 33 325 4.53e-46 161
Msa0487560 AT1G20132.1 31.532 333 205 10 30 349 55 377 6.56e-46 161
Msa0487560 AT1G20130.2 31.595 326 204 9 30 343 178 496 1.60e-45 163
Msa0487560 AT1G20130.1 31.595 326 204 9 30 343 198 516 2.23e-45 163
Msa0487560 AT2G42990.1 31.902 326 204 9 31 348 23 338 1.68e-44 157
Msa0487560 AT1G06990.1 30.721 319 210 8 35 348 36 348 4.58e-44 156
Msa0487560 AT2G31540.1 32.268 313 200 10 35 341 34 340 8.49e-44 155
Msa0487560 AT4G26790.1 30.625 320 212 7 33 348 26 339 1.43e-43 154
Msa0487560 AT4G26790.2 30.625 320 212 7 33 348 26 339 1.43e-43 154
Msa0487560 AT2G40250.1 28.395 324 216 8 34 348 34 350 2.63e-43 154
Msa0487560 AT2G30310.1 29.841 315 209 10 35 343 33 341 2.77e-43 154
Msa0487560 AT1G58430.1 30.380 316 202 11 35 341 34 340 6.47e-43 153
Msa0487560 AT2G30220.1 30.696 316 205 10 35 343 32 340 6.80e-43 153
Msa0487560 AT1G58520.3 31.056 322 200 11 27 343 21 325 9.87e-43 152
Msa0487560 AT1G58525.1 31.056 322 200 11 27 343 21 325 9.87e-43 152
Msa0487560 AT2G24560.1 30.351 313 206 10 35 341 33 339 4.53e-42 150
Msa0487560 AT1G75920.2 33.746 323 194 9 32 349 25 332 4.91e-42 150
Msa0487560 AT5G33370.2 33.798 287 169 6 20 302 14 283 5.25e-42 150
Msa0487560 AT1G20135.1 32.573 307 187 10 40 343 33 322 9.70e-42 149
Msa0487560 AT1G23500.1 34.365 323 182 11 34 348 33 333 1.66e-41 149
Msa0487560 AT5G63170.1 30.530 321 189 10 33 343 25 321 7.86e-41 147
Msa0487560 AT3G43570.1 28.190 337 199 9 11 343 6 303 8.96e-41 146
Msa0487560 AT5G45950.1 31.212 330 209 12 32 356 36 352 1.48e-39 144
Msa0487560 AT1G71120.1 30.409 342 216 9 34 367 29 356 1.59e-39 144
Msa0487560 AT5G45960.1 28.698 338 210 10 22 341 30 354 7.59e-39 142
Msa0487560 AT1G75930.1 33.851 322 183 11 38 349 31 332 1.03e-38 141
Msa0487560 AT1G75920.1 32.249 338 194 10 32 349 20 342 3.82e-38 140
Msa0487560 AT3G14225.2 31.195 343 217 11 38 369 39 373 5.37e-37 137
Msa0487560 AT3G14225.1 31.304 345 218 11 38 369 39 377 1.83e-36 136
Msa0487560 AT3G43550.1 30.034 293 190 10 10 298 5 286 6.57e-36 132
Msa0487560 AT5G40990.1 31.304 345 218 11 36 369 37 373 3.15e-35 133
Msa0487560 AT1G75910.1 30.312 320 204 8 35 349 27 332 6.03e-35 131
Msa0487560 AT1G75920.3 30.841 321 175 9 32 349 25 301 2.91e-32 123
Msa0487560 AT2G04020.1 36.792 212 121 5 31 238 38 240 7.11e-32 121
Msa0487560 AT2G04020.2 30.330 333 172 11 31 356 38 317 1.80e-31 121
Msa0487560 AT1G53920.1 28.857 350 218 12 34 366 46 381 3.46e-31 122
Msa0487560 AT1G75920.4 32.203 295 180 9 60 349 25 304 5.19e-31 120
Msa0487560 AT2G24560.2 30.147 272 178 10 35 300 33 298 1.42e-29 116
Msa0487560 AT1G53940.2 30.484 351 213 14 36 369 39 375 6.22e-29 115
Msa0487560 AT1G54020.2 26.087 345 226 11 31 368 26 348 9.79e-28 112
Msa0487560 AT1G54010.1 26.211 351 233 11 26 368 24 356 1.07e-27 112
Msa0487560 AT1G53990.1 28.042 378 238 13 5 369 8 364 2.82e-27 111
Msa0487560 AT3G09930.2 28.750 320 189 11 37 341 40 335 1.01e-26 109
Msa0487560 AT3G09930.1 28.750 320 189 11 37 341 40 335 1.01e-26 109
Msa0487560 AT1G54000.1 26.836 354 227 13 26 368 24 356 1.26e-26 109
Msa0487560 AT1G54030.1 27.976 336 214 14 37 369 53 363 3.30e-26 108
Msa0487560 AT5G03610.1 28.481 316 192 14 38 341 45 338 4.67e-25 104
Msa0487560 AT1G28570.1 26.862 376 230 17 1 349 1 358 1.79e-24 103
Msa0487560 AT3G14220.1 29.240 342 216 14 33 367 29 351 4.72e-24 102
Msa0487560 AT3G05180.1 29.619 341 200 15 35 348 35 362 3.06e-23 100
Msa0487560 AT4G16233.1 42.063 126 70 3 246 369 6 130 3.25e-23 94.4
Msa0487560 AT1G56670.1 25.263 380 232 14 7 360 10 363 1.08e-22 98.6
Msa0487560 AT3G14210.1 27.019 359 212 16 31 368 29 358 1.37e-22 98.6
Msa0487560 AT3G27950.1 25.915 355 230 10 35 369 31 372 1.57e-22 98.2
Msa0487560 AT5G03600.1 28.261 322 189 12 32 341 10 301 2.72e-22 96.7
Msa0487560 AT5G03600.2 28.261 322 189 12 32 341 45 336 3.79e-22 96.7
Msa0487560 AT1G31550.2 25.826 333 209 12 40 348 40 358 4.18e-22 97.1
Msa0487560 AT2G31550.1 28.947 190 129 5 154 341 14 199 5.24e-22 93.6
Msa0487560 AT1G09390.1 25.731 342 228 9 32 360 33 361 5.40e-22 96.3
Msa0487560 AT3G62280.1 28.367 349 215 14 30 362 30 359 9.61e-22 95.5
Msa0487560 AT1G31550.1 25.301 332 209 12 40 348 40 355 1.72e-21 95.1
Msa0487560 AT1G28580.1 25.532 376 231 15 1 350 10 362 2.51e-21 94.7
Msa0487560 AT1G54790.3 25.212 353 236 11 33 364 29 374 3.29e-21 94.4
Msa0487560 AT3G26430.1 27.083 336 209 12 35 344 30 355 3.88e-21 94.0
Msa0487560 AT1G28590.1 26.254 339 203 13 40 349 40 360 6.99e-21 93.6
Msa0487560 AT2G27360.1 25.434 346 224 14 40 362 37 371 7.13e-21 93.6
Msa0487560 AT4G16220.1 47.826 115 56 3 31 142 25 138 8.29e-21 90.9
Msa0487560 AT4G01130.1 25.513 341 213 11 38 350 36 363 9.86e-21 92.8
Msa0487560 AT1G67830.1 25.072 347 212 11 33 347 27 357 9.95e-21 92.8
Msa0487560 AT5G14450.1 25.843 356 228 10 35 365 40 384 4.05e-20 91.3
Msa0487560 AT1G28600.1 25.225 333 211 12 40 348 35 353 1.86e-18 86.3
Msa0487560 AT2G36325.1 26.331 357 216 16 6 341 10 340 3.69e-18 85.1
Msa0487560 AT1G54020.1 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0487560 AT1G54020.5 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0487560 AT1G54020.3 24.382 283 189 8 90 368 1 262 5.78e-18 83.6
Msa0487560 AT1G54790.1 24.438 356 231 12 35 364 30 373 9.47e-18 84.3
Msa0487560 AT5G45910.1 29.240 342 211 16 25 343 20 353 1.27e-17 84.0
Msa0487560 AT1G28610.2 23.416 363 234 13 24 357 19 366 2.25e-17 83.2
Msa0487560 AT1G53940.1 29.520 271 166 12 36 296 39 294 2.52e-17 82.0
Msa0487560 AT3G48460.1 23.565 331 220 13 38 348 40 357 5.30e-17 82.0
Msa0487560 AT1G28650.1 24.058 345 224 14 40 360 41 371 7.77e-17 81.6
Msa0487560 AT1G28640.1 24.650 357 207 14 40 360 39 369 2.08e-16 80.5
Msa0487560 AT1G28670.1 23.867 331 210 12 40 343 39 354 4.02e-15 76.6
Msa0487560 AT1G28660.1 25.000 352 191 15 40 349 39 359 7.36e-15 75.9
Msa0487560 AT1G28660.2 25.356 351 190 16 40 349 39 358 2.54e-14 73.9
Msa0487560 AT1G54020.4 25.822 213 144 7 162 368 9 213 3.40e-14 72.0
Msa0487560 AT1G54790.2 23.560 382 228 14 35 364 30 399 1.08e-13 72.4
Msa0487560 AT3G14210.2 25.106 235 155 8 146 368 5 230 1.71e-13 70.5
Msa0487560 AT4G01130.2 24.638 276 180 9 38 298 36 298 1.82e-13 71.2
Msa0487560 AT3G62280.2 27.143 280 171 11 30 294 30 291 1.12e-12 68.6
Msa0487560 AT4G01130.3 23.239 284 181 9 95 350 3 277 4.06e-12 66.6
Msa0487560 AT1G56670.2 23.323 313 194 11 7 298 10 297 1.04e-11 65.5

Find 98 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCCATGTTTCTTCATATT+TGG 0.151987 3_4:+6564090 Msa0487560:CDS
AAACCCCTTGCTCTTGAATT+TGG 0.162052 3_4:-6564590 None:intergenic
TGCCAATTGTTGGATATTAA+TGG 0.219897 3_4:-6570865 None:intergenic
GTTACAGCAGTTGGTCAAAT+TGG 0.223495 3_4:+6565587 Msa0487560:CDS
AGCAAATGCATATATTATTC+AGG 0.228493 3_4:+6564896 Msa0487560:CDS
TATAATTGCAGCTCAACTTT+TGG 0.269085 3_4:+6564547 Msa0487560:intron
TATGAATTAGCACGTATTAA+TGG 0.270158 3_4:+6565620 Msa0487560:CDS
GGCGACTCATTGGTTGATAA+TGG 0.292013 3_4:+6564111 Msa0487560:CDS
TCCAGCAATTACATTCATTA+GGG 0.299031 3_4:+6565549 Msa0487560:intron
ATCGTGGGAAATATTTGTTT+TGG 0.314915 3_4:+6570766 Msa0487560:CDS
GCCAATTGTTGGATATTAAT+GGG 0.327993 3_4:-6570864 None:intergenic
AGTGCAGATCTAGCATTAAA+TGG 0.346283 3_4:+6565779 Msa0487560:CDS
GTCCAGCAATTACATTCATT+AGG 0.349350 3_4:+6565548 Msa0487560:intron
TATCAATGGAGGGCAGCTTC+CGG 0.349478 3_4:+6565721 Msa0487560:CDS
ATCAATGGAGGGCAGCTTCC+GGG 0.356171 3_4:+6565722 Msa0487560:CDS
CGAACCTTCGTCGATGCATT+AGG 0.365692 3_4:+6564228 Msa0487560:CDS
AGGGCTAATTATCGACCTTA+TGG 0.366890 3_4:+6564162 Msa0487560:CDS
TCCCATTAATATCCAACAAT+TGG 0.374975 3_4:+6570863 Msa0487560:CDS
TCTAAAGCATTGCCAATTGT+TGG 0.375039 3_4:-6570875 None:intergenic
CAGTCATGAAATAGTTGTTC+AGG 0.377347 3_4:-6564937 None:intergenic
CCCCTTGCTCTTGAATTTGG+AGG 0.378814 3_4:-6564587 None:intergenic
CTTCATATTTGGCGACTCAT+TGG 0.380484 3_4:+6564101 Msa0487560:CDS
AGGGCAGATGCAAAAGCTTT+AGG 0.387451 3_4:-6564989 None:intergenic
AAATTCAAGAGCAAGGGGTT+TGG 0.392526 3_4:+6564592 Msa0487560:CDS
TGCATATATTATTCAGGGTT+GGG 0.404381 3_4:+6564902 Msa0487560:CDS
TCCTACAAAATGTTTGTCTC+AGG 0.412148 3_4:+6564038 Msa0487560:CDS
AGCATTAAATGGAAAATCAA+TGG 0.419825 3_4:+6565790 Msa0487560:CDS
AGAGGAGTCAATTATGCATC+TGG 0.423551 3_4:+6564623 Msa0487560:CDS
TTAATTTACTCACAGATAGT+TGG 0.426379 3_4:-6565030 None:intergenic
CAAATGAGAAGGTTCTTTAG+AGG 0.429552 3_4:+6564845 Msa0487560:CDS
AATTAGCCCTAGCAAGTGTT+AGG 0.433591 3_4:-6564149 None:intergenic
TAAGACCTGAGTTAAAATAC+TGG 0.436936 3_4:-6565682 None:intergenic
TCTTCACATACTTGTTGTAA+TGG 0.441043 3_4:-6570744 None:intergenic
GCAGGCATCAGAGAGGAAAC+AGG 0.442089 3_4:+6564650 Msa0487560:CDS
AGGGGTTTGGACCTTCTTAG+AGG 0.442660 3_4:+6564605 Msa0487560:CDS
ACTGAGCAAGTGACAAACTT+TGG 0.446748 3_4:+6564809 Msa0487560:CDS
TTGTGAACTGTATGATGCTT+TGG 0.450987 3_4:-6570829 None:intergenic
TTACAGCAGTTGGTCAAATT+GGG 0.452443 3_4:+6565588 Msa0487560:CDS
ATGCATATATTATTCAGGGT+TGG 0.453650 3_4:+6564901 Msa0487560:CDS
GTTAATCTTCTCATTGCATC+CGG 0.456244 3_4:-6565651 None:intergenic
AGAAATGTTTCGTACACGTA+TGG 0.460587 3_4:+6570998 Msa0487560:three_prime_UTR
TTAATACGTGCTAATTCATA+TGG 0.463074 3_4:-6565617 None:intergenic
AATAATATATGCATTTGCTT+AGG 0.472093 3_4:-6564892 None:intergenic
GCAAATGCATATATTATTCA+GGG 0.476578 3_4:+6564897 Msa0487560:CDS
ATCGACGAAGGTTCGACCAT+TGG 0.483856 3_4:-6564220 None:intergenic
CATGGCACTTGTTGTCCCTC+CGG 0.494961 3_4:-6564075 None:intergenic
CACATACTTGTTGTAATGGA+AGG 0.499795 3_4:-6570740 None:intergenic
TCCTCCAAATTCAAGAGCAA+GGG 0.502054 3_4:+6564586 Msa0487560:CDS
GCATTAAATGGAAAATCAAT+GGG 0.502185 3_4:+6565791 Msa0487560:CDS
AATTATGCATCTGGAGCAGC+AGG 0.508819 3_4:+6564632 Msa0487560:CDS
CAATTAGTTCAGAATATCAA+TGG 0.510533 3_4:+6565707 Msa0487560:CDS
ATGGGATCCTAACACTTGCT+AGG 0.512016 3_4:+6564142 Msa0487560:CDS
AAAATGTTGGCCAACTCAGT+TGG 0.512592 3_4:-6570801 None:intergenic
TGTGGGAAGTCGATGCCATA+AGG 0.521963 3_4:-6564177 None:intergenic
TGCTTTCCACCCAACTGAGT+TGG 0.522513 3_4:+6570791 Msa0487560:CDS
AAATGTTGGCCAACTCAGTT+GGG 0.523121 3_4:-6570800 None:intergenic
TTCCTCCAAATTCAAGAGCA+AGG 0.526404 3_4:+6564585 Msa0487560:CDS
CATAATTGACTCCTCTAAGA+AGG 0.526704 3_4:-6564616 None:intergenic
AAGCGACCGGTGGGACCTTG+TGG 0.527657 3_4:-6564195 None:intergenic
TTGATAATGGAAACAACAAT+GGG 0.532524 3_4:+6564124 Msa0487560:CDS
GACAAGGGATGCTGTGGTGT+TGG 0.534229 3_4:+6570693 Msa0487560:CDS
GGCGAGCGTAGTCTTGAAGA+AGG 0.538225 3_4:-6565009 None:intergenic
GAAATGTTTCGTACACGTAT+GGG 0.542008 3_4:+6570999 Msa0487560:three_prime_UTR
GTTGATAATGGAAACAACAA+TGG 0.544775 3_4:+6564123 Msa0487560:CDS
AGCGACCGGTGGGACCTTGT+GGG 0.545059 3_4:-6564194 None:intergenic
TGTTGTCCCTCCGGTTGCCG+TGG 0.548026 3_4:-6564066 None:intergenic
AAAGTGATCGTTACAGCAGT+TGG 0.549990 3_4:+6565578 Msa0487560:CDS
TCGACCATTGGTGAAGCGAC+CGG 0.554522 3_4:-6564208 None:intergenic
AACAAGTATGTGAAGATCGT+GGG 0.555057 3_4:+6570751 Msa0487560:CDS
GACTTCCCACAAGGTCCCAC+CGG 0.565595 3_4:+6564189 Msa0487560:CDS
CGTATTAATGGTAACATCAC+CGG 0.574338 3_4:+6565632 Msa0487560:CDS
CCCACCGGTCGCTTCACCAA+TGG 0.577167 3_4:+6564204 Msa0487560:CDS
TCATATTGTTCATTTGTGTG+TGG 0.579622 3_4:+6570913 Msa0487560:three_prime_UTR
AGAGGAAACAGGCAGTAACC+TGG 0.589288 3_4:+6564661 Msa0487560:CDS
CCTCCAAATTCAAGAGCAAG+GGG 0.596481 3_4:+6564587 Msa0487560:CDS
CAACAAGTATGTGAAGATCG+TGG 0.597220 3_4:+6570750 Msa0487560:CDS
ACCATTGGTGAAGCGACCGG+TGG 0.597222 3_4:-6564205 None:intergenic
TGCTTTGGCTAGTAAAATGT+TGG 0.597725 3_4:-6570814 None:intergenic
ACCTGAGTTAAAATACTGGA+TGG 0.601483 3_4:-6565678 None:intergenic
TGGGATCCTAACACTTGCTA+GGG 0.606593 3_4:+6564143 Msa0487560:CDS
CCAGCAATTACATTCATTAG+GGG 0.609332 3_4:+6565550 Msa0487560:intron
AGGGTTTGATGTGGTAGACA+AGG 0.614118 3_4:+6570677 Msa0487560:intron
TTAGTTCAGAATATCAATGG+AGG 0.620340 3_4:+6565710 Msa0487560:CDS
TGTTGGCCAACTCAGTTGGG+TGG 0.627367 3_4:-6570797 None:intergenic
ACACAGTGCAACAAATGAGA+AGG 0.629161 3_4:+6564834 Msa0487560:CDS
ATTACCTAATGCATCGACGA+AGG 0.630153 3_4:-6564232 None:intergenic
TAGTTCAGAATATCAATGGA+GGG 0.636717 3_4:+6565711 Msa0487560:CDS
TTATGATACAGGGTTTGATG+TGG 0.642111 3_4:+6570668 Msa0487560:intron
TCGCCAAATATGAAGAAACA+TGG 0.643194 3_4:-6564093 None:intergenic
GGGTTTGATGTGGTAGACAA+GGG 0.645221 3_4:+6570678 Msa0487560:intron
GTGGTAGACAAGGGATGCTG+TGG 0.654624 3_4:+6570687 Msa0487560:CDS
GCGAGCGTAGTCTTGAAGAA+GGG 0.654662 3_4:-6565008 None:intergenic
TGTGGTGTTGGCAGAAACAA+TGG 0.658260 3_4:+6570705 Msa0487560:CDS
CTATAAGACAACACACACCA+TGG 0.664970 3_4:-6570977 None:intergenic
TATGGCATCGACTTCCCACA+AGG 0.673822 3_4:+6564180 Msa0487560:CDS
CCATTGGTGAAGCGACCGGT+GGG 0.674337 3_4:-6564204 None:intergenic
ATATTGATCATAAATGTCCA+TGG 0.677023 3_4:+6570960 Msa0487560:three_prime_UTR
TGGAGCAGCAGGCATCAGAG+AGG 0.700418 3_4:+6564643 Msa0487560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTATTTTTTTAA+AGG + chr3_4:6568488-6568507 Msa0487560:intron 0.0%
!!! TATATAGATTTTAATTACAT+TGG + chr3_4:6564265-6564284 Msa0487560:intron 10.0%
!! TAGTATATTGAAATATTAAA+TGG + chr3_4:6565371-6565390 Msa0487560:intron 10.0%
!!! TATGAAATATATTTTTAAGT+AGG - chr3_4:6565972-6565991 None:intergenic 10.0%
!!! TAGTTTGTTAATTTATTTAA+GGG - chr3_4:6566210-6566229 None:intergenic 10.0%
!!! TTAGTTTGTTAATTTATTTA+AGG - chr3_4:6566211-6566230 None:intergenic 10.0%
!!! TTATAATTTTTTCAATTTTC+TGG - chr3_4:6566797-6566816 None:intergenic 10.0%
!!! CATATTTTAAAAAAAAACAT+GGG - chr3_4:6567502-6567521 None:intergenic 10.0%
!!! ACATATTTTAAAAAAAAACA+TGG - chr3_4:6567503-6567522 None:intergenic 10.0%
!! TAGACAAATATAAAAAATAA+TGG - chr3_4:6567595-6567614 None:intergenic 10.0%
!! AAAAAAAAAAATATCATTCA+TGG - chr3_4:6567728-6567747 None:intergenic 10.0%
!!! AAAGAAATAAATTTAAAGTT+AGG - chr3_4:6568134-6568153 None:intergenic 10.0%
!!! AAATTTATTTCTTTTTGAAA+AGG + chr3_4:6568140-6568159 Msa0487560:intron 10.0%
!!! TTGAATTTTATTTAAAGTAA+TGG + chr3_4:6568599-6568618 Msa0487560:intron 10.0%
!!! ATTTTACATGTTATAATAAT+TGG + chr3_4:6569254-6569273 Msa0487560:intron 10.0%
!! AAAATTCAAAAAAATAAAGT+CGG - chr3_4:6569326-6569345 None:intergenic 10.0%
!! TTAACAAAATATTTAATTGT+TGG + chr3_4:6569401-6569420 Msa0487560:intron 10.0%
!! ACATATATATATATATAAGT+AGG + chr3_4:6570288-6570307 Msa0487560:intron 10.0%
!! CATATATATATATATAAGTA+GGG + chr3_4:6570289-6570308 Msa0487560:intron 10.0%
!! ATATATATATATATAAGTAG+GGG + chr3_4:6570290-6570309 Msa0487560:intron 10.0%
!!! TTTTGAATCATTCTTTAAAT+CGG - chr3_4:6564459-6564478 None:intergenic 15.0%
!! ATATGTATTCATACTAATTT+AGG + chr3_4:6566358-6566377 Msa0487560:intron 15.0%
!! AAGTTAAAATATAGTCAAAT+TGG + chr3_4:6566485-6566504 Msa0487560:intron 15.0%
!!! TGGATTTTTATTTTAAGAAT+GGG - chr3_4:6566688-6566707 None:intergenic 15.0%
!! ATTTCAATTACTGATAAAAA+TGG + chr3_4:6566895-6566914 Msa0487560:intron 15.0%
!! AAAATCATGAATTAAACAAA+AGG + chr3_4:6567131-6567150 Msa0487560:intron 15.0%
!! TTTGTAATTGATACATAAAA+AGG - chr3_4:6567933-6567952 None:intergenic 15.0%
!!! ACTTATTTCTTATGTATTTT+AGG - chr3_4:6568103-6568122 None:intergenic 15.0%
!!! CTCATTTTTTTTAATGAATT+TGG + chr3_4:6568198-6568217 Msa0487560:intron 15.0%
!! TTCTTCAAAAAAAATTACAT+TGG - chr3_4:6568306-6568325 None:intergenic 15.0%
!! CAAGACAAATATTAAAAAAA+AGG - chr3_4:6568582-6568601 None:intergenic 15.0%
!! ATAATGAATATTAAAAAGCA+CGG - chr3_4:6568889-6568908 None:intergenic 15.0%
!! ATTCAGAATAAAAATAAGTT+AGG - chr3_4:6568997-6569016 None:intergenic 15.0%
!!! TTATTTTTATTCTGAATAAG+TGG + chr3_4:6569000-6569019 Msa0487560:intron 15.0%
!! ATAATAATTGGATAAACATT+CGG + chr3_4:6569266-6569285 Msa0487560:intron 15.0%
!!! AAATTTTTAAAAGACAAACA+AGG - chr3_4:6569377-6569396 None:intergenic 15.0%
!! TTGAGAATAACTTATAATTT+GGG - chr3_4:6569785-6569804 None:intergenic 15.0%
!! TTTGAGAATAACTTATAATT+TGG - chr3_4:6569786-6569805 None:intergenic 15.0%
!! ATTAAGTGATTATACAAATT+GGG + chr3_4:6570177-6570196 Msa0487560:intron 15.0%
!!! ATTTATTTTTTTAAAACCCA+AGG + chr3_4:6570329-6570348 Msa0487560:intron 15.0%
!! CTTAATCATAAAATAGAAAC+CGG + chr3_4:6564390-6564409 Msa0487560:intron 20.0%
!! TTAATCATAAAATAGAAACC+GGG + chr3_4:6564391-6564410 Msa0487560:intron 20.0%
!!! AATTTTCTTTTTATGTATGC+AGG + chr3_4:6564769-6564788 Msa0487560:intron 20.0%
!!! ATTTTCTTTTTATGTATGCA+GGG + chr3_4:6564770-6564789 Msa0487560:intron 20.0%
!! AATAATATATGCATTTGCTT+AGG - chr3_4:6564895-6564914 None:intergenic 20.0%
!!! TTATTTTTTGATCCATAAGT+AGG - chr3_4:6565942-6565961 None:intergenic 20.0%
!! ATTGGTGTAATACAAATTAT+AGG + chr3_4:6566503-6566522 Msa0487560:intron 20.0%
!!! TTTTTATTTTAAATTGCAGC+AGG - chr3_4:6566606-6566625 None:intergenic 20.0%
!!! ATTTTTATTTTAAGAATGGG+AGG - chr3_4:6566685-6566704 None:intergenic 20.0%
!!! GTGGATTTTTATTTTAAGAA+TGG - chr3_4:6566689-6566708 None:intergenic 20.0%
!! TTAGTATTTGACTATAATGA+AGG - chr3_4:6566834-6566853 None:intergenic 20.0%
!! CTCAATTATTGCAATAAAAA+TGG + chr3_4:6566870-6566889 Msa0487560:intron 20.0%
!! ATGATGAGATTTAAGAAAAT+GGG - chr3_4:6567006-6567025 None:intergenic 20.0%
!! AAGTCATAACAAATTAACAA+TGG - chr3_4:6567317-6567336 None:intergenic 20.0%
!! CGTAATAAAAAAAAAACAGA+AGG + chr3_4:6567359-6567378 Msa0487560:intron 20.0%
!! CTAGAAAGAAAAAAAAAACA+AGG - chr3_4:6567665-6567684 None:intergenic 20.0%
!! TCATGGATACAAAAAAATAT+GGG - chr3_4:6567711-6567730 None:intergenic 20.0%
!! TTCATGGATACAAAAAAATA+TGG - chr3_4:6567712-6567731 None:intergenic 20.0%
!! CATTGTTACATAACAAATTT+GGG - chr3_4:6567770-6567789 None:intergenic 20.0%
!! TCATTGTTACATAACAAATT+TGG - chr3_4:6567771-6567790 None:intergenic 20.0%
!! AATTGATACATAAAAAGGTA+CGG - chr3_4:6567928-6567947 None:intergenic 20.0%
!!! TTAAAGCATTTTTTTTCGTA+TGG + chr3_4:6568051-6568070 Msa0487560:intron 20.0%
!! AGAAATACAAAGAAAGAAAA+GGG - chr3_4:6568180-6568199 None:intergenic 20.0%
!!! TAATGAATTTTGCATTACTT+TGG + chr3_4:6568222-6568241 Msa0487560:intron 20.0%
!!! TTTTCATTGACACAAAAAAA+CGG - chr3_4:6568391-6568410 None:intergenic 20.0%
!! TCTGATAGATAAAAAAAACA+CGG - chr3_4:6568854-6568873 None:intergenic 20.0%
!!! TAATGAATATTAAAAAGCAC+GGG - chr3_4:6568888-6568907 None:intergenic 20.0%
!!! TCATTGTAATGTTTTTGTTA+AGG + chr3_4:6569072-6569091 Msa0487560:intron 20.0%
!!! AAGTAGCATTTTTATTTTAC+CGG - chr3_4:6569940-6569959 None:intergenic 20.0%
!! AAAAAAATTAAGTGAAAGAG+AGG + chr3_4:6570024-6570043 Msa0487560:intron 20.0%
!! ATACAAAAAAGAAATGATTC+AGG + chr3_4:6570118-6570137 Msa0487560:intron 20.0%
!! GATTAAGTGATTATACAAAT+TGG + chr3_4:6570176-6570195 Msa0487560:intron 20.0%
!! TTAAGTGATTATACAAATTG+GGG + chr3_4:6570178-6570197 Msa0487560:intron 20.0%
!!! TTGATAATGGAAACAACAAT+GGG + chr3_4:6564124-6564143 Msa0487560:CDS 25.0%
! GAGAATAAATTCTCTTATAG+TGG + chr3_4:6564344-6564363 Msa0487560:intron 25.0%
! TAATCATAAAATAGAAACCG+GGG + chr3_4:6564392-6564411 Msa0487560:intron 25.0%
! AAGAATATATATGCAATACC+AGG - chr3_4:6564682-6564701 None:intergenic 25.0%
!! TTTTCTTTTTATGTATGCAG+GGG + chr3_4:6564771-6564790 Msa0487560:intron 25.0%
! AGCAAATGCATATATTATTC+AGG + chr3_4:6564896-6564915 Msa0487560:CDS 25.0%
! GCAAATGCATATATTATTCA+GGG + chr3_4:6564897-6564916 Msa0487560:CDS 25.0%
! TTAATTTACTCACAGATAGT+TGG - chr3_4:6565033-6565052 None:intergenic 25.0%
! GCTATATATGTAGATTCAAT+TGG - chr3_4:6565075-6565094 None:intergenic 25.0%
! ATTGAATCTACATATATAGC+TGG + chr3_4:6565075-6565094 Msa0487560:intron 25.0%
! AAATGGTATGAATGAGTTAA+CGG + chr3_4:6565388-6565407 Msa0487560:intron 25.0%
! TTAATACGTGCTAATTCATA+TGG - chr3_4:6565620-6565639 None:intergenic 25.0%
! TATGAATTAGCACGTATTAA+TGG + chr3_4:6565620-6565639 Msa0487560:CDS 25.0%
! CAATTAGTTCAGAATATCAA+TGG + chr3_4:6565707-6565726 Msa0487560:CDS 25.0%
! AGCATTAAATGGAAAATCAA+TGG + chr3_4:6565790-6565809 Msa0487560:CDS 25.0%
! GCATTAAATGGAAAATCAAT+GGG + chr3_4:6565791-6565810 Msa0487560:CDS 25.0%
! ATATGCCTATAATAGGTAAA+AGG - chr3_4:6565872-6565891 None:intergenic 25.0%
! CCTAAAAATATGCCTATAAT+AGG - chr3_4:6565879-6565898 None:intergenic 25.0%
!! CCTATTATAGGCATATTTTT+AGG + chr3_4:6565876-6565895 Msa0487560:intron 25.0%
! AAGAAGATAACGTGAAATAA+GGG - chr3_4:6566715-6566734 None:intergenic 25.0%
! TATCTTTAATCATGATGAGA+TGG - chr3_4:6566738-6566757 None:intergenic 25.0%
! TGACTATAATGAAGGTTTAT+AGG - chr3_4:6566826-6566845 None:intergenic 25.0%
! GATGATGAGATTTAAGAAAA+TGG - chr3_4:6567007-6567026 None:intergenic 25.0%
!! TCTGTAGTTTTCACTAAAAT+GGG - chr3_4:6567173-6567192 None:intergenic 25.0%
!! ATCTGTAGTTTTCACTAAAA+TGG - chr3_4:6567174-6567193 None:intergenic 25.0%
!! TTTACATTTTCTCAATTTCC+TGG + chr3_4:6567193-6567212 Msa0487560:intron 25.0%
! TTGTTGTCCATTAAATTTCT+GGG - chr3_4:6567239-6567258 None:intergenic 25.0%
!! TTTGTTGTCCATTAAATTTC+TGG - chr3_4:6567240-6567259 None:intergenic 25.0%
! GTGATTGATACATGTAAAAA+AGG - chr3_4:6567631-6567650 None:intergenic 25.0%
! TTTCTTTCTAGATTTACTGA+TGG + chr3_4:6567674-6567693 Msa0487560:intron 25.0%
!!! TCTTTATCACTGTTTTTATG+AGG - chr3_4:6567899-6567918 None:intergenic 25.0%
!! ATTGATACATAAAAAGGTAC+GGG - chr3_4:6567927-6567946 None:intergenic 25.0%
! GAGAAATACAAAGAAAGAAA+AGG - chr3_4:6568181-6568200 None:intergenic 25.0%
! ATTGGATCATGAAAAAAACA+CGG - chr3_4:6568288-6568307 None:intergenic 25.0%
!!! ATTTTTTTTGAAGAAGATCC+AGG + chr3_4:6568311-6568330 Msa0487560:intron 25.0%
!!! TTTTTTTTGAAGAAGATCCA+GGG + chr3_4:6568312-6568331 Msa0487560:intron 25.0%
! TTTCATTGACACAAAAAAAC+GGG - chr3_4:6568390-6568409 None:intergenic 25.0%
!! TCCACATTTTATTGTGTATT+AGG + chr3_4:6568443-6568462 Msa0487560:intron 25.0%
!! CCACATTTTATTGTGTATTA+GGG + chr3_4:6568444-6568463 Msa0487560:intron 25.0%
!! CACATTTTATTGTGTATTAG+GGG + chr3_4:6568445-6568464 Msa0487560:intron 25.0%
!! ACATTTTATTGTGTATTAGG+GGG + chr3_4:6568446-6568465 Msa0487560:intron 25.0%
! AACTGATACATAAAAAACAC+AGG - chr3_4:6568788-6568807 None:intergenic 25.0%
! CTGATAGATAAAAAAAACAC+GGG - chr3_4:6568853-6568872 None:intergenic 25.0%
! TATATAAGAAAAGTGACATG+TGG - chr3_4:6569531-6569550 None:intergenic 25.0%
!!! CCTATACATACATTTTAGAA+TGG - chr3_4:6569591-6569610 None:intergenic 25.0%
!!! CCATTCTAAAATGTATGTAT+AGG + chr3_4:6569588-6569607 Msa0487560:intron 25.0%
! TATGTATAGGAGATTATTTG+TGG + chr3_4:6569601-6569620 Msa0487560:intron 25.0%
! ATGTATAGGAGATTATTTGT+GGG + chr3_4:6569602-6569621 Msa0487560:intron 25.0%
! TATGCCAAAAAGTTACATAT+AGG + chr3_4:6569650-6569669 Msa0487560:intron 25.0%
! TAATATATCAATGGCTAAGA+AGG + chr3_4:6569710-6569729 Msa0487560:intron 25.0%
! AGAATAACTTATAATTTGGG+TGG - chr3_4:6569782-6569801 None:intergenic 25.0%
!! CTCGACTCTTTATTTAAAAT+AGG + chr3_4:6569911-6569930 Msa0487560:intron 25.0%
! AAGAACTTCTAAACATGAAA+GGG + chr3_4:6569998-6570017 Msa0487560:intron 25.0%
! TAAGTGATTATACAAATTGG+GGG + chr3_4:6570179-6570198 Msa0487560:intron 25.0%
!!! ATGTTACTTCCTTTTTTCTT+CGG - chr3_4:6570272-6570291 None:intergenic 25.0%
! ATATATATATAAGTAGGGGT+AGG + chr3_4:6570294-6570313 Msa0487560:intron 25.0%
! TGAATCATAACTTATGATAC+AGG + chr3_4:6570657-6570676 Msa0487560:intron 25.0%
! GAATCATAACTTATGATACA+GGG + chr3_4:6570658-6570677 Msa0487560:intron 25.0%
! ATATTGATCATAAATGTCCA+TGG + chr3_4:6570960-6570979 Msa0487560:three_prime_UTR 25.0%
! ACAAACATTTTGTAGGACTT+AGG - chr3_4:6564035-6564054 None:intergenic 30.0%
!! GTTGATAATGGAAACAACAA+TGG + chr3_4:6564123-6564142 Msa0487560:CDS 30.0%
! AATCATTTGTTGCTAACGTT+AGG + chr3_4:6564431-6564450 Msa0487560:intron 30.0%
! ATCATTTGTTGCTAACGTTA+GGG + chr3_4:6564432-6564451 Msa0487560:intron 30.0%
! TATAATTGCAGCTCAACTTT+TGG + chr3_4:6564547-6564566 Msa0487560:intron 30.0%
! ATAATTGCAGCTCAACTTTT+GGG + chr3_4:6564548-6564567 Msa0487560:intron 30.0%
AGCACACATTAATTCAACAT+TGG + chr3_4:6564710-6564729 Msa0487560:intron 30.0%
! TTTCTTTTTATGTATGCAGG+GGG + chr3_4:6564772-6564791 Msa0487560:intron 30.0%
ATGCATATATTATTCAGGGT+TGG + chr3_4:6564901-6564920 Msa0487560:CDS 30.0%
TGCATATATTATTCAGGGTT+GGG + chr3_4:6564902-6564921 Msa0487560:CDS 30.0%
CTACATATATAGCTGGATAA+TGG + chr3_4:6565082-6565101 Msa0487560:intron 30.0%
TTATTGAACAGTGTATGTTG+AGG + chr3_4:6565115-6565134 Msa0487560:intron 30.0%
TCTCAAATGGGATAAAAAAG+TGG + chr3_4:6565306-6565325 Msa0487560:intron 30.0%
TATCTGGTCAGTTAATTCAT+AGG - chr3_4:6565440-6565459 None:intergenic 30.0%
TCCAGCAATTACATTCATTA+GGG + chr3_4:6565549-6565568 Msa0487560:intron 30.0%
TAAGACCTGAGTTAAAATAC+TGG - chr3_4:6565685-6565704 None:intergenic 30.0%
TTAGTTCAGAATATCAATGG+AGG + chr3_4:6565710-6565729 Msa0487560:CDS 30.0%
TAGTTCAGAATATCAATGGA+GGG + chr3_4:6565711-6565730 Msa0487560:CDS 30.0%
! CAACACCTTTTACCTATTAT+AGG + chr3_4:6565864-6565883 Msa0487560:intron 30.0%
AATGACATCTAACCTACTTA+TGG + chr3_4:6565927-6565946 Msa0487560:intron 30.0%
CATGTTAAGCAACCAAAAAA+TGG - chr3_4:6566161-6566180 None:intergenic 30.0%
GACTTATGTGTATGCTATAA+GGG - chr3_4:6566439-6566458 None:intergenic 30.0%
AGACTTATGTGTATGCTATA+AGG - chr3_4:6566440-6566459 None:intergenic 30.0%
GGTGTAATACAAATTATAGG+TGG + chr3_4:6566506-6566525 Msa0487560:intron 30.0%
ACAAATTATAGGTGGCATTT+AGG + chr3_4:6566514-6566533 Msa0487560:intron 30.0%
CAAATTATAGGTGGCATTTA+GGG + chr3_4:6566515-6566534 Msa0487560:intron 30.0%
AGAAGATAACGTGAAATAAG+GGG - chr3_4:6566714-6566733 None:intergenic 30.0%
GAAGAAGATAACGTGAAATA+AGG - chr3_4:6566716-6566735 None:intergenic 30.0%
! ATGGAACTACTAAGATTTTG+AGG + chr3_4:6566914-6566933 Msa0487560:intron 30.0%
!! TTTGATTTGAGTTAGGAAAC+TGG - chr3_4:6566978-6566997 None:intergenic 30.0%
!! GGTTGAATTTGATTTGAGTT+AGG - chr3_4:6566985-6567004 None:intergenic 30.0%
! TTCAACCTTTTCTTACCTAT+AGG + chr3_4:6567051-6567070 Msa0487560:intron 30.0%
AGAAACCTATAGGTAAGAAA+AGG - chr3_4:6567059-6567078 None:intergenic 30.0%
!! CTCATTTTTCAGAAACCTAT+AGG - chr3_4:6567069-6567088 None:intergenic 30.0%
TATTATGCCTCAAATATCCA+TGG + chr3_4:6567090-6567109 Msa0487560:intron 30.0%
! ATTTTCTCAATTTCCTGGAT+TGG + chr3_4:6567198-6567217 Msa0487560:intron 30.0%
! TTTTCTCAATTTCCTGGATT+GGG + chr3_4:6567199-6567218 Msa0487560:intron 30.0%
AAGGAAACCCAGAAATTTAA+TGG + chr3_4:6567229-6567248 Msa0487560:intron 30.0%
ATGAAAAAAACACGGGAAAA+TGG - chr3_4:6568280-6568299 None:intergenic 30.0%
TTGGATCATGAAAAAAACAC+GGG - chr3_4:6568287-6568306 None:intergenic 30.0%
ATGACACAAATATTAATCCC+TGG - chr3_4:6568332-6568351 None:intergenic 30.0%
CCCTAATACACAATAAAATG+TGG - chr3_4:6568447-6568466 None:intergenic 30.0%
! TCCTTTTGGTAAGTCATAAA+TGG + chr3_4:6569435-6569454 Msa0487560:intron 30.0%
ACCATTTATGACTTACCAAA+AGG - chr3_4:6569439-6569458 None:intergenic 30.0%
AAGTCATAAATGGTAGTAAG+TGG + chr3_4:6569445-6569464 Msa0487560:intron 30.0%
!! TTTCATTTTGTTATGCCATG+TGG + chr3_4:6569551-6569570 Msa0487560:intron 30.0%
TGTATAGGAGATTATTTGTG+GGG + chr3_4:6569603-6569622 Msa0487560:intron 30.0%
! GCAACCTATATGTAACTTTT+TGG - chr3_4:6569657-6569676 None:intergenic 30.0%
TATAATTTGGGTGGCATTTA+GGG - chr3_4:6569773-6569792 None:intergenic 30.0%
TTATAATTTGGGTGGCATTT+AGG - chr3_4:6569774-6569793 None:intergenic 30.0%
AGCCTTCTATTTCATAGAAA+CGG - chr3_4:6569893-6569912 None:intergenic 30.0%
! CTTTATTTAAAATAGGCCTC+CGG + chr3_4:6569918-6569937 Msa0487560:intron 30.0%
!!! TAGCATTTTTATTTTACCGG+AGG - chr3_4:6569937-6569956 None:intergenic 30.0%
GTTTAGAAGTTCTTCTGATT+CGG - chr3_4:6569992-6570011 None:intergenic 30.0%
GAAGAACTTCTAAACATGAA+AGG + chr3_4:6569997-6570016 Msa0487560:intron 30.0%
! ATTTACCTAATAGTGTCGTT+TGG + chr3_4:6570051-6570070 Msa0487560:intron 30.0%
TAAACTCTAATTCTCCTTTC+TGG - chr3_4:6570230-6570249 None:intergenic 30.0%
TATCTCACCACTATAGTAAT+AGG - chr3_4:6570488-6570507 None:intergenic 30.0%
! CAAAAAATGTAAGAGTGTGA+TGG + chr3_4:6570539-6570558 Msa0487560:intron 30.0%
! GTAATCATGACAAAAGTACA+TGG + chr3_4:6570597-6570616 Msa0487560:intron 30.0%
!! ATGGTTTCAAAAGCTGATTT+TGG + chr3_4:6570616-6570635 Msa0487560:intron 30.0%
!! TCTTCACATACTTGTTGTAA+TGG - chr3_4:6570747-6570766 None:intergenic 30.0%
! ATCGTGGGAAATATTTGTTT+TGG + chr3_4:6570766-6570785 Msa0487560:CDS 30.0%
!! TCGTGGGAAATATTTGTTTT+GGG + chr3_4:6570767-6570786 Msa0487560:CDS 30.0%
TCCCATTAATATCCAACAAT+TGG + chr3_4:6570863-6570882 Msa0487560:CDS 30.0%
GCCAATTGTTGGATATTAAT+GGG - chr3_4:6570867-6570886 None:intergenic 30.0%
TGCCAATTGTTGGATATTAA+TGG - chr3_4:6570868-6570887 None:intergenic 30.0%
TCATATTGTTCATTTGTGTG+TGG + chr3_4:6570913-6570932 Msa0487560:three_prime_UTR 30.0%
! TTTTCACATTCACGTGTATC+TGG + chr3_4:6564004-6564023 Msa0487560:CDS 35.0%
TCCTACAAAATGTTTGTCTC+AGG + chr3_4:6564038-6564057 Msa0487560:CDS 35.0%
! ACCTGAGACAAACATTTTGT+AGG - chr3_4:6564042-6564061 None:intergenic 35.0%
GTGCCATGTTTCTTCATATT+TGG + chr3_4:6564090-6564109 Msa0487560:CDS 35.0%
TCGCCAAATATGAAGAAACA+TGG - chr3_4:6564096-6564115 None:intergenic 35.0%
! CATAATTGACTCCTCTAAGA+AGG - chr3_4:6564619-6564638 None:intergenic 35.0%
CAAATGAGAAGGTTCTTTAG+AGG + chr3_4:6564845-6564864 Msa0487560:CDS 35.0%
CAGTCATGAAATAGTTGTTC+AGG - chr3_4:6564940-6564959 None:intergenic 35.0%
ATGTGACTAAGAGTCTCAAA+TGG + chr3_4:6565293-6565312 Msa0487560:intron 35.0%
TGTGACTAAGAGTCTCAAAT+GGG + chr3_4:6565294-6565313 Msa0487560:intron 35.0%
GAGTTAACGGTTGAGTTATT+TGG + chr3_4:6565401-6565420 Msa0487560:intron 35.0%
GTCCAGCAATTACATTCATT+AGG + chr3_4:6565548-6565567 Msa0487560:intron 35.0%
CCAGCAATTACATTCATTAG+GGG + chr3_4:6565550-6565569 Msa0487560:intron 35.0%
TTACAGCAGTTGGTCAAATT+GGG + chr3_4:6565588-6565607 Msa0487560:CDS 35.0%
CGTATTAATGGTAACATCAC+CGG + chr3_4:6565632-6565651 Msa0487560:CDS 35.0%
GTTAATCTTCTCATTGCATC+CGG - chr3_4:6565654-6565673 None:intergenic 35.0%
ACCTGAGTTAAAATACTGGA+TGG - chr3_4:6565681-6565700 None:intergenic 35.0%
AAAAACACAAACTTTGCTCC+CGG - chr3_4:6565743-6565762 None:intergenic 35.0%
AGTGCAGATCTAGCATTAAA+TGG + chr3_4:6565779-6565798 Msa0487560:CDS 35.0%
AAGAGTTGACAGTATTGTCT+TGG - chr3_4:6565842-6565861 None:intergenic 35.0%
!!! TAGGCATATTTTTAGGCTTG+AGG + chr3_4:6565883-6565902 Msa0487560:intron 35.0%
!! AATGTTAACTTGTGCCTTGA+AGG + chr3_4:6566038-6566057 Msa0487560:intron 35.0%
!! ATGTTAACTTGTGCCTTGAA+GGG + chr3_4:6566039-6566058 Msa0487560:intron 35.0%
!!! AATGCGAAGTTGCCATTTTT+TGG + chr3_4:6566146-6566165 Msa0487560:intron 35.0%
AGTTGATCCATAGAGTCTTA+TGG - chr3_4:6566326-6566345 None:intergenic 35.0%
GAGTCTCATTTCAAATGTTG+CGG + chr3_4:6566382-6566401 Msa0487560:intron 35.0%
GAAGATAACGTGAAATAAGG+GGG - chr3_4:6566713-6566732 None:intergenic 35.0%
! ATCCATGGCTGTGAAATTTT+CGG + chr3_4:6567105-6567124 Msa0487560:intron 35.0%
! GTTGAAAACTGGCTCTTATA+TGG - chr3_4:6567395-6567414 None:intergenic 35.0%
!! CGGGTTTTATAGTTGAAAAC+TGG - chr3_4:6567406-6567425 None:intergenic 35.0%
! TGGTGTATGTTTTGTCCTTT+TGG + chr3_4:6569421-6569440 Msa0487560:intron 35.0%
CAATGGTTTAGATCTATCAC+TGG - chr3_4:6569679-6569698 None:intergenic 35.0%
TTCATGCATGTTTCCATACA+GGG + chr3_4:6569867-6569886 Msa0487560:intron 35.0%
CAAATCCAAACGACACTATT+AGG - chr3_4:6570059-6570078 None:intergenic 35.0%
CACCAAATTTATGTCCAGAA+AGG + chr3_4:6570213-6570232 Msa0487560:intron 35.0%
CTCCTTTCTGGACATAAATT+TGG - chr3_4:6570218-6570237 None:intergenic 35.0%
AAACGTGTACCGAAGAAAAA+AGG + chr3_4:6570260-6570279 Msa0487560:intron 35.0%
GAACAGCTTATATGGAAAGA+GGG - chr3_4:6570394-6570413 None:intergenic 35.0%
AGAACAGCTTATATGGAAAG+AGG - chr3_4:6570395-6570414 None:intergenic 35.0%
GTTCAACAGAACAGCTTATA+TGG - chr3_4:6570402-6570421 None:intergenic 35.0%
! GTAATAGGAGCATGTTTCAT+TGG - chr3_4:6570473-6570492 None:intergenic 35.0%
ACATGCTCCTATTACTATAG+TGG + chr3_4:6570478-6570497 Msa0487560:intron 35.0%
! AAAATGTAAGAGTGTGATGG+TGG + chr3_4:6570542-6570561 Msa0487560:intron 35.0%
TTATGATACAGGGTTTGATG+TGG + chr3_4:6570668-6570687 Msa0487560:intron 35.0%
!! CACATACTTGTTGTAATGGA+AGG - chr3_4:6570743-6570762 None:intergenic 35.0%
AACAAGTATGTGAAGATCGT+GGG + chr3_4:6570751-6570770 Msa0487560:CDS 35.0%
TGCTTTGGCTAGTAAAATGT+TGG - chr3_4:6570817-6570836 None:intergenic 35.0%
TTGTGAACTGTATGATGCTT+TGG - chr3_4:6570832-6570851 None:intergenic 35.0%
!! TCTAAAGCATTGCCAATTGT+TGG - chr3_4:6570878-6570897 None:intergenic 35.0%
AGAAATGTTTCGTACACGTA+TGG + chr3_4:6570998-6571017 Msa0487560:three_prime_UTR 35.0%
GAAATGTTTCGTACACGTAT+GGG + chr3_4:6570999-6571018 Msa0487560:three_prime_UTR 35.0%
CTTCATATTTGGCGACTCAT+TGG + chr3_4:6564101-6564120 Msa0487560:CDS 40.0%
AATTAGCCCTAGCAAGTGTT+AGG - chr3_4:6564152-6564171 None:intergenic 40.0%
AGGGCTAATTATCGACCTTA+TGG + chr3_4:6564162-6564181 Msa0487560:CDS 40.0%
! ATTACCTAATGCATCGACGA+AGG - chr3_4:6564235-6564254 None:intergenic 40.0%
TTCCTCCAAATTCAAGAGCA+AGG + chr3_4:6564585-6564604 Msa0487560:CDS 40.0%
TCCTCCAAATTCAAGAGCAA+GGG + chr3_4:6564586-6564605 Msa0487560:CDS 40.0%
AAACCCCTTGCTCTTGAATT+TGG - chr3_4:6564593-6564612 None:intergenic 40.0%
AAATTCAAGAGCAAGGGGTT+TGG + chr3_4:6564592-6564611 Msa0487560:CDS 40.0%
AGAGGAGTCAATTATGCATC+TGG + chr3_4:6564623-6564642 Msa0487560:CDS 40.0%
ACTGAGCAAGTGACAAACTT+TGG + chr3_4:6564809-6564828 Msa0487560:CDS 40.0%
ACACAGTGCAACAAATGAGA+AGG + chr3_4:6564834-6564853 Msa0487560:CDS 40.0%
TAACTGACCAGATAACTCCT+CGG + chr3_4:6565446-6565465 Msa0487560:intron 40.0%
CCCCTAATGAATGTAATTGC+TGG - chr3_4:6565553-6565572 None:intergenic 40.0%
AAAGTGATCGTTACAGCAGT+TGG + chr3_4:6565578-6565597 Msa0487560:CDS 40.0%
GTTACAGCAGTTGGTCAAAT+TGG + chr3_4:6565587-6565606 Msa0487560:CDS 40.0%
!!! GCCATCCAGTATTTTAACTC+AGG + chr3_4:6565677-6565696 Msa0487560:CDS 40.0%
! GGGAGCAAAGTTTGTGTTTT+TGG + chr3_4:6565742-6565761 Msa0487560:CDS 40.0%
TCTTTAACATGTGCCCTTCA+AGG - chr3_4:6566055-6566074 None:intergenic 40.0%
TTGCTTAACATGTGCCCTTA+GGG + chr3_4:6566169-6566188 Msa0487560:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr3_4:6566186-6566205 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr3_4:6566187-6566206 None:intergenic 40.0%
GACTAGACCATAAGACTCTA+TGG + chr3_4:6566316-6566335 Msa0487560:intron 40.0%
ATTATAGGTGGCATTTAGGG+TGG + chr3_4:6566518-6566537 Msa0487560:intron 40.0%
! TTATAGGTGGCATTTAGGGT+GGG + chr3_4:6566519-6566538 Msa0487560:intron 40.0%
! GGGAAAGATTTTCCCACTAT+GGG + chr3_4:6566545-6566564 Msa0487560:intron 40.0%
AAGTTGGACTTTCCCATAGT+GGG - chr3_4:6566560-6566579 None:intergenic 40.0%
AAAGTTGGACTTTCCCATAG+TGG - chr3_4:6566561-6566580 None:intergenic 40.0%
TGTCAGCTGTAGGTAAAAGT+TGG - chr3_4:6566576-6566595 None:intergenic 40.0%
TTCACAGCCATGGATATTTG+AGG - chr3_4:6567100-6567119 None:intergenic 40.0%
!! TCCTGGATTGGGTTTTTGAA+AGG + chr3_4:6567210-6567229 Msa0487560:intron 40.0%
TCCTTTCAAAAACCCAATCC+AGG - chr3_4:6567214-6567233 None:intergenic 40.0%
GGCTCTTATATGGTGATTGT+GGG - chr3_4:6567385-6567404 None:intergenic 40.0%
TGGCTCTTATATGGTGATTG+TGG - chr3_4:6567386-6567405 None:intergenic 40.0%
TATAAAACCCGTGCAATGCA+CGG + chr3_4:6567415-6567434 Msa0487560:intron 40.0%
GTGAAATGACACAATCCACA+TGG - chr3_4:6569569-6569588 None:intergenic 40.0%
! GGGAAAGATTTTCCCACTAT+GGG - chr3_4:6566545-6566564 None:intergenic 40.0%
GTTCATGCATGTTTCCATAC+AGG + chr3_4:6569866-6569885 Msa0487560:intron 40.0%
GGCCGTTTCTATGAAATAGA+AGG + chr3_4:6569888-6569907 Msa0487560:intron 40.0%
ATTTGTCACTCCTTCGTTGT+GGG + chr3_4:6570074-6570093 Msa0487560:intron 40.0%
GTGGGAAAGGAGAAAATGAA+TGG + chr3_4:6570092-6570111 Msa0487560:intron 40.0%
GTGATTATACAAATTGGGGG+TGG + chr3_4:6570182-6570201 Msa0487560:intron 40.0%
TATACAAATTGGGGGTGGTT+TGG + chr3_4:6570187-6570206 Msa0487560:intron 40.0%
CAACAAGTATGTGAAGATCG+TGG + chr3_4:6570750-6570769 Msa0487560:CDS 40.0%
AAATGTTGGCCAACTCAGTT+GGG - chr3_4:6570803-6570822 None:intergenic 40.0%
AAAATGTTGGCCAACTCAGT+TGG - chr3_4:6570804-6570823 None:intergenic 40.0%
CTATAAGACAACACACACCA+TGG - chr3_4:6570980-6570999 None:intergenic 40.0%
! GTTTGTCTCAGGTTTTGCCA+CGG + chr3_4:6564049-6564068 Msa0487560:CDS 45.0%
!! GGCGACTCATTGGTTGATAA+TGG + chr3_4:6564111-6564130 Msa0487560:CDS 45.0%
ATGGGATCCTAACACTTGCT+AGG + chr3_4:6564142-6564161 Msa0487560:CDS 45.0%
! TGGGATCCTAACACTTGCTA+GGG + chr3_4:6564143-6564162 Msa0487560:CDS 45.0%
GAAACCGGGGAACTATAATG+CGG + chr3_4:6564405-6564424 Msa0487560:intron 45.0%
TTAGCCGCATTATAGTTCCC+CGG - chr3_4:6564412-6564431 None:intergenic 45.0%
CCTCCAAATTCAAGAGCAAG+GGG + chr3_4:6564587-6564606 Msa0487560:CDS 45.0%
! AATTATGCATCTGGAGCAGC+AGG + chr3_4:6564632-6564651 Msa0487560:CDS 45.0%
AGGGCAGATGCAAAAGCTTT+AGG - chr3_4:6564992-6565011 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG + chr3_4:6566168-6566187 Msa0487560:intron 45.0%
! GGGGAAAGATTTTCCCACTA+TGG + chr3_4:6566544-6566563 Msa0487560:intron 45.0%
AGGTTATAGCTGTCAGCTGT+AGG - chr3_4:6566586-6566605 None:intergenic 45.0%
TAACGTGAAATAAGGGGGTG+TGG - chr3_4:6566708-6566727 None:intergenic 45.0%
AACTGGCGAAGATGTATGGT+GGG - chr3_4:6566961-6566980 None:intergenic 45.0%
AAACTGGCGAAGATGTATGG+TGG - chr3_4:6566962-6566981 None:intergenic 45.0%
AGGAAACTGGCGAAGATGTA+TGG - chr3_4:6566965-6566984 None:intergenic 45.0%
TGCCGAAAATTTCACAGCCA+TGG - chr3_4:6567110-6567129 None:intergenic 45.0%
ATAAAACCCGTGCAATGCAC+GGG + chr3_4:6567416-6567435 Msa0487560:intron 45.0%
! AGAAGGCTACTTTCCCATAG+TGG + chr3_4:6569727-6569746 Msa0487560:intron 45.0%
! GAAGGCTACTTTCCCATAGT+GGG + chr3_4:6569728-6569747 Msa0487560:intron 45.0%
! GGGGAAAGATTTTCCCACTA+TGG - chr3_4:6566544-6566563 None:intergenic 45.0%
AATTTGGGTGGCATTTAGGG+TGG - chr3_4:6569770-6569789 None:intergenic 45.0%
TTCATAGAAACGGCCCTGTA+TGG - chr3_4:6569883-6569902 None:intergenic 45.0%
GATTTGTCACTCCTTCGTTG+TGG + chr3_4:6570073-6570092 Msa0487560:intron 45.0%
TTTCTCCTTTCCCACAACGA+AGG - chr3_4:6570087-6570106 None:intergenic 45.0%
TTAAAACCCAAGGTCCAGCT+TGG + chr3_4:6570339-6570358 Msa0487560:intron 45.0%
AGCTTATATGGAAAGAGGGC+CGG - chr3_4:6570390-6570409 None:intergenic 45.0%
ACTTTCACAAGTGCCTGTGT+CGG + chr3_4:6570430-6570449 Msa0487560:intron 45.0%
TCGAGTTTATCTACCGACAC+AGG - chr3_4:6570446-6570465 None:intergenic 45.0%
AGGGTTTGATGTGGTAGACA+AGG + chr3_4:6570677-6570696 Msa0487560:intron 45.0%
GGGTTTGATGTGGTAGACAA+GGG + chr3_4:6570678-6570697 Msa0487560:intron 45.0%
!! TGTGGTGTTGGCAGAAACAA+TGG + chr3_4:6570705-6570724 Msa0487560:CDS 45.0%
!! TTATTATATTATCAAATATT+AGG + chr3_4:6566638-6566657 Msa0487560:intron 5.0%
!! ATTTGAATTAAATATAAATT+AGG - chr3_4:6567266-6567285 None:intergenic 5.0%
!! ATAAACATTAAAAAAAATAT+AGG - chr3_4:6567555-6567574 None:intergenic 5.0%
!!! ATTTTTTTTAATGTTTATTA+AGG + chr3_4:6567557-6567576 Msa0487560:intron 5.0%
!! TCATTATAAATTAAAAAAAT+AGG - chr3_4:6567805-6567824 None:intergenic 5.0%
!!! ATCAATTAATTTTTAAAAAT+AGG + chr3_4:6568001-6568020 Msa0487560:intron 5.0%
!!! TCATTTTTTTTAATATTTAT+AGG + chr3_4:6568924-6568943 Msa0487560:intron 5.0%
!!! ATATTATTATTTTAAATCAA+TGG - chr3_4:6569696-6569715 None:intergenic 5.0%
!! TTAAAATAATAATATATCAA+TGG + chr3_4:6569701-6569720 Msa0487560:intron 5.0%
TGTGGGAAGTCGATGCCATA+AGG - chr3_4:6564180-6564199 None:intergenic 50.0%
!! TATGGCATCGACTTCCCACA+AGG + chr3_4:6564180-6564199 Msa0487560:CDS 50.0%
ATCGACGAAGGTTCGACCAT+TGG - chr3_4:6564223-6564242 None:intergenic 50.0%
CGAACCTTCGTCGATGCATT+AGG + chr3_4:6564228-6564247 Msa0487560:CDS 50.0%
CCCCTTGCTCTTGAATTTGG+AGG - chr3_4:6564590-6564609 None:intergenic 50.0%
AGGGGTTTGGACCTTCTTAG+AGG + chr3_4:6564605-6564624 Msa0487560:CDS 50.0%
AGAGGAAACAGGCAGTAACC+TGG + chr3_4:6564661-6564680 Msa0487560:CDS 50.0%
! GCGAGCGTAGTCTTGAAGAA+GGG - chr3_4:6565011-6565030 None:intergenic 50.0%
TGACCAGATAACTCCTCGGT+TGG + chr3_4:6565450-6565469 Msa0487560:intron 50.0%
AACTAAGTAACCGCCAACCG+AGG - chr3_4:6565466-6565485 None:intergenic 50.0%
TATCAATGGAGGGCAGCTTC+CGG + chr3_4:6565721-6565740 Msa0487560:CDS 50.0%
CGTCAGACTCGTGTCAAACT+AGG - chr3_4:6566290-6566309 None:intergenic 50.0%
! GCGAAGATGTATGGTGGGAA+TGG - chr3_4:6566956-6566975 None:intergenic 50.0%
! GTGGCATTTAGGGTGGATAG+GGG - chr3_4:6569763-6569782 None:intergenic 50.0%
! GGTGGCATTTAGGGTGGATA+GGG - chr3_4:6569764-6569783 None:intergenic 50.0%
TCACTCCTTCGTTGTGGGAA+AGG + chr3_4:6570079-6570098 Msa0487560:intron 50.0%
TGAGCACCTTGCATTCTCCA+AGG + chr3_4:6570363-6570382 Msa0487560:intron 50.0%
ACCTTGCATTCTCCAAGGTC+CGG + chr3_4:6570368-6570387 Msa0487560:intron 50.0%
TGCTTTCCACCCAACTGAGT+TGG + chr3_4:6570791-6570810 Msa0487560:CDS 50.0%
! TCAGGTTTTGCCACGGCAAC+CGG + chr3_4:6564056-6564075 Msa0487560:CDS 55.0%
!! CATGGCACTTGTTGTCCCTC+CGG - chr3_4:6564078-6564097 None:intergenic 55.0%
TCGACCATTGGTGAAGCGAC+CGG - chr3_4:6564211-6564230 None:intergenic 55.0%
GCAGGCATCAGAGAGGAAAC+AGG + chr3_4:6564650-6564669 Msa0487560:CDS 55.0%
! GGCGAGCGTAGTCTTGAAGA+AGG - chr3_4:6565012-6565031 None:intergenic 55.0%
CCAGATAACTCCTCGGTTGG+CGG + chr3_4:6565453-6565472 Msa0487560:intron 55.0%
ATCAATGGAGGGCAGCTTCC+GGG + chr3_4:6565722-6565741 Msa0487560:CDS 55.0%
! AGGTGGCATTTAGGGTGGGT+AGG + chr3_4:6566523-6566542 Msa0487560:intron 55.0%
! GGTGGCATTTAGGGTGGGTA+GGG + chr3_4:6566524-6566543 Msa0487560:intron 55.0%
! GTGGCATTTAGGGTGGGTAG+GGG + chr3_4:6566525-6566544 Msa0487560:intron 55.0%
CTATCACCCGTGCATTGCAC+GGG - chr3_4:6567425-6567444 None:intergenic 55.0%
CCTATCACCCGTGCATTGCA+CGG - chr3_4:6567426-6567445 None:intergenic 55.0%
! GGGTGGCATTTAGGGTGGAT+AGG - chr3_4:6569765-6569784 None:intergenic 55.0%
GCTCAACCAAGCTGGACCTT+GGG - chr3_4:6570348-6570367 None:intergenic 55.0%
TGCTCAACCAAGCTGGACCT+TGG - chr3_4:6570349-6570368 None:intergenic 55.0%
! TGCAAGGTGCTCAACCAAGC+TGG - chr3_4:6570356-6570375 None:intergenic 55.0%
GTGGTAGACAAGGGATGCTG+TGG + chr3_4:6570687-6570706 Msa0487560:CDS 55.0%
GACAAGGGATGCTGTGGTGT+TGG + chr3_4:6570693-6570712 Msa0487560:CDS 55.0%
TGTTGGCCAACTCAGTTGGG+TGG - chr3_4:6570800-6570819 None:intergenic 55.0%
! GTTTTGCCACGGCAACCGGA+GGG + chr3_4:6564060-6564079 Msa0487560:CDS 60.0%
GACTTCCCACAAGGTCCCAC+CGG + chr3_4:6564189-6564208 Msa0487560:CDS 60.0%
CCATTGGTGAAGCGACCGGT+GGG - chr3_4:6564207-6564226 None:intergenic 60.0%
ACCATTGGTGAAGCGACCGG+TGG - chr3_4:6564208-6564227 None:intergenic 60.0%
TGGAGCAGCAGGCATCAGAG+AGG + chr3_4:6564643-6564662 Msa0487560:CDS 60.0%
CCGCCAACCGAGGAGTTATC+TGG - chr3_4:6565456-6565475 None:intergenic 60.0%
CCGTGCAATGCACGGGTGAT+AGG + chr3_4:6567423-6567442 Msa0487560:intron 60.0%
GCCGGACCTTGGAGAATGCA+AGG - chr3_4:6570372-6570391 None:intergenic 60.0%
ATGGAAAGAGGGCCGGACCT+TGG - chr3_4:6570383-6570402 None:intergenic 60.0%
! GGTTTTGCCACGGCAACCGG+AGG + chr3_4:6564059-6564078 Msa0487560:CDS 65.0%
TGTTGTCCCTCCGGTTGCCG+TGG - chr3_4:6564069-6564088 None:intergenic 65.0%
AGCGACCGGTGGGACCTTGT+GGG - chr3_4:6564197-6564216 None:intergenic 65.0%
AAGCGACCGGTGGGACCTTG+TGG - chr3_4:6564198-6564217 None:intergenic 65.0%
CCCACCGGTCGCTTCACCAA+TGG + chr3_4:6564204-6564223 Msa0487560:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 6563966 6571075 6563966 ID=Msa0487560;Name=Msa0487560
chr3_4 mRNA 6563966 6571075 6563966 ID=Msa0487560-mRNA-1;Parent=Msa0487560;Name=Msa0487560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=25|1|1|1|1|1|5|179|369
chr3_4 exon 6563966 6564249 6563966 ID=Msa0487560-mRNA-1:exon:2262;Parent=Msa0487560-mRNA-1
chr3_4 exon 6564558 6564682 6564558 ID=Msa0487560-mRNA-1:exon:2263;Parent=Msa0487560-mRNA-1
chr3_4 exon 6564791 6565039 6564791 ID=Msa0487560-mRNA-1:exon:2264;Parent=Msa0487560-mRNA-1
chr3_4 exon 6565554 6565812 6565554 ID=Msa0487560-mRNA-1:exon:2265;Parent=Msa0487560-mRNA-1
chr3_4 exon 6570679 6571075 6570679 ID=Msa0487560-mRNA-1:exon:2266;Parent=Msa0487560-mRNA-1
chr3_4 five_prime_UTR 6563966 6563990 6563966 ID=Msa0487560-mRNA-1:five_prime_utr;Parent=Msa0487560-mRNA-1
chr3_4 CDS 6563991 6564249 6563991 ID=Msa0487560-mRNA-1:cds;Parent=Msa0487560-mRNA-1
chr3_4 CDS 6564558 6564682 6564558 ID=Msa0487560-mRNA-1:cds;Parent=Msa0487560-mRNA-1
chr3_4 CDS 6564791 6565039 6564791 ID=Msa0487560-mRNA-1:cds;Parent=Msa0487560-mRNA-1
chr3_4 CDS 6565554 6565812 6565554 ID=Msa0487560-mRNA-1:cds;Parent=Msa0487560-mRNA-1
chr3_4 CDS 6570679 6570896 6570679 ID=Msa0487560-mRNA-1:cds;Parent=Msa0487560-mRNA-1
chr3_4 three_prime_UTR 6570897 6571075 6570897 ID=Msa0487560-mRNA-1:three_prime_utr;Parent=Msa0487560-mRNA-1
Gene Sequence

>Msa0487560

ATGAAGCATTTTATTTTCACATTCACGTGTATCTGGCTGAGCCTAAGTCCTACAAAATGTTTGTCTCAGGTTTTGCCACGGCAACCGGAGGGACAACAAGTGCCATGTTTCTTCATATTTGGCGACTCATTGGTTGATAATGGAAACAACAATGGGATCCTAACACTTGCTAGGGCTAATTATCGACCTTATGGCATCGACTTCCCACAAGGTCCCACCGGTCGCTTCACCAATGGTCGAACCTTCGTCGATGCATTAGCTCAACTTTTGGGTTTTCGAGCATATATTCCTCCAAATTCAAGAGCAAGGGGTTTGGACCTTCTTAGAGGAGTCAATTATGCATCTGGAGCAGCAGGCATCAGAGAGGAAACAGGCAGTAACCTGGGGGCTCATACATCAATGACTGAGCAAGTGACAAACTTTGGAAACACAGTGCAACAAATGAGAAGGTTCTTTAGAGGAGACAATGATGCACTTAATAGCTACCTAAGCAAATGCATATATTATTCAGGGTTGGGAAGCAATGATTACCTGAACAACTATTTCATGACTGATTTTTATTCAACTAGCACTCAGTACACACCTAAAGCTTTTGCATCTGCCCTTCTTCAAGACTACGCTCGCCAACTATCTCAATTACATTCATTAGGGGCAAGAAAAGTGATCGTTACAGCAGTTGGTCAAATTGGGTGCATACCATATGAATTAGCACGTATTAATGGTAACATCACCGGATGCAATGAGAAGATTAACAATGCCATCCAGTATTTTAACTCAGGTCTTAAGCAATTAGTTCAGAATATCAATGGAGGGCAGCTTCCGGGAGCAAAGTTTGTGTTTTTGGACTTTTATCAAAGCAGTGCAGATCTAGCATTAAATGGAAAATCAATGGGGTTTGATGTGGTAGACAAGGGATGCTGTGGTGTTGGCAGAAACAATGGACAAATCACTTGCCTTCCATTACAACAAGTATGTGAAGATCGTGGGAAATATTTGTTTTGGGATGCTTTCCACCCAACTGAGTTGGCCAACATTTTACTAGCCAAAGCATCATACAGTTCACAATCATACACTTCTCCCATTAATATCCAACAATTGGCAATGCTTTAG
Protein sequence

>Msa0487560

MKHFIFTFTCIWLSLSPTKCLSQVLPRQPEGQQVPCFFIFGDSLVDNGNNNGILTLARANYRPYGIDFPQGPTGRFTNGRTFVDALAQLLGFRAYIPPNSRARGLDLLRGVNYASGAAGIREETGSNLGAHTSMTEQVTNFGNTVQQMRRFFRGDNDALNSYLSKCIYYSGLGSNDYLNNYFMTDFYSTSTQYTPKAFASALLQDYARQLSQLHSLGARKVIVTAVGQIGCIPYELARINGNITGCNEKINNAIQYFNSGLKQLVQNINGGQLPGAKFVFLDFYQSSADLALNGKSMGFDVVDKGCCGVGRNNGQITCLPLQQVCEDRGKYLFWDAFHPTELANILLAKASYSSQSYTSPINIQQLAML*