AlfalfaGEDB | Msa1215460

M. sativa cultivar zhongmu-4 / Msa1215460

KEGG: K07297
GO: GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0010033 GO:0010646 GO:0010648 GO:0023051 GO:0023057 GO:0034285 GO:0042221 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:1901419 GO:1901420 GO:1901700 GO:1905957 GO:1905958
PFAM: PF03006.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215460	XP_003609428.2	99.180	366	2	1	1	366	1	365	0.0	753

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215460	sp\|Q93ZH9\|HHP1_ARATH	55.000	360	115	3	4	363	20	332	9.41e-138	398

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215460	G7JFE9	99.180	366	2	1	1	366	1	365	0.0	753

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142470	Msa1215460	0.838226	3.260999e-57	-8.615850e-47
Msa0227510	Msa1215460	0.802018	6.844991e-49	-8.615850e-47
Msa0315480	Msa1215460	0.802755	4.826301e-49	-8.615850e-47
Msa0344580	Msa1215460	0.817211	3.708575e-52	-8.615850e-47
Msa0380920	Msa1215460	0.820351	7.182166e-53	-8.615850e-47
Msa0392410	Msa1215460	0.813154	2.954581e-51	-8.615850e-47
Msa0392450	Msa1215460	0.802780	4.768701e-49	-8.615850e-47
Msa0398060	Msa1215460	0.801697	7.969251e-49	-8.615850e-47
Msa0430820	Msa1215460	0.812050	5.152856e-51	-8.615850e-47
Msa0487560	Msa1215460	0.821522	3.861178e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215460	MtrunA17_Chr4g0064481	99.180	366	2	1	1	366	1	365	0.0	753
Msa1215460	MtrunA17_Chr2g0305481	49.258	337	143	5	39	358	4	329	8.01e-107	317
Msa1215460	MtrunA17_Chr5g0401021	45.480	354	159	7	42	363	28	379	1.53e-96	292
Msa1215460	MtrunA17_Chr3g0134921	41.371	394	184	6	17	363	3	396	1.71e-96	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215460	AT5G20270.1	55.000	360	115	3	4	363	20	332	9.57e-139	398
Msa1215460	AT4G37680.3	43.401	394	179	9	10	363	1	390	1.72e-98	298
Msa1215460	AT4G37680.4	43.401	394	179	9	10	363	1	390	1.72e-98	298
Msa1215460	AT2G24150.1	42.614	352	179	5	10	356	1	334	8.43e-98	294
Msa1215460	AT4G37680.1	43.750	384	174	8	18	363	6	385	1.60e-97	295
Msa1215460	AT4G37680.5	43.750	384	174	8	18	363	6	385	1.60e-97	295
Msa1215460	AT4G37680.2	43.750	384	174	8	18	363	6	385	1.60e-97	295
Msa1215460	AT4G30850.2	44.543	339	163	4	37	358	20	350	1.37e-96	291
Msa1215460	AT4G30850.1	44.543	339	163	4	37	358	20	350	1.37e-96	291
Msa1215460	AT4G38320.1	43.164	373	170	8	18	352	6	374	2.21e-91	279

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Find 104 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACAAACAACCTTTGATT+TGG	0.307947	8_1:-76714715	Msa1215460:five_prime_UTR
AAGGTTTGGCACTATGTATG+TGG	0.496101	8_1:+76714905	None:intergenic
AATCTATTCTTAACAGAAAC+AGG	0.333630	8_1:+76712782	None:intergenic
ACAACATAGCTCGAAATGCG+CGG	0.643746	8_1:+76712596	None:intergenic
ACACTCTCCTCCGTAAGGTT+TGG	0.472006	8_1:+76714891	None:intergenic
ACAGAAACAGGTTTAAGTCA+TGG	0.515069	8_1:+76712794	None:intergenic
ACTAGCATATGAATGTGTCA+TGG	0.642425	8_1:-76712491	Msa1215460:CDS
AGACAAATTGTGTTGTCAAG+AGG	0.634394	8_1:-76714643	Msa1215460:CDS
AGACCCAAACTAATTTATGA+TGG	0.535015	8_1:+76714947	None:intergenic
AGCTATGTTGTTCTGTTCAA+TGG	0.349396	8_1:-76712584	Msa1215460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACCCAAACTAATTTATGA+TGG	+	chr8_1:76712279-76712298	None:intergenic	30.0%
AACACAAACAACCTTTGATT+TGG	-	chr8_1:76712508-76712527	Msa1215460:CDS	30.0%
CGACATCTTTATATTATCCT+TGG	+	chr8_1:76712652-76712671	None:intergenic	30.0%
ATATAAAGATGTCGCATGAT+CGG	-	chr8_1:76712658-76712677	Msa1215460:CDS	30.0%
ATCCAACTAAATGTCTGAAA+AGG	+	chr8_1:76712964-76712983	None:intergenic	30.0%
AAAGAATAAGAGAACCAATC+TGG	-	chr8_1:76713144-76713163	Msa1215460:CDS	30.0%
AAGCAAACATGACATGAAAA+TGG	-	chr8_1:76713663-76713682	Msa1215460:intron	30.0%
ATGACATGAAAATGGTTTCT+TGG	-	chr8_1:76713671-76713690	Msa1215460:intron	30.0%
ACAATAACAACTAGATCTTG+GGG	-	chr8_1:76713743-76713762	Msa1215460:intron	30.0%
GCAAAATTAGTTGAGAATTG+TGG	+	chr8_1:76714013-76714032	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	76712273	76714972	76712273	ID=Msa1215460;Name=Msa1215460
chr8_1	mRNA	76712273	76714972	76712273	ID=Msa1215460-mRNA-1;Parent=Msa1215460;Name=Msa1215460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=294\|1\|1\|1\|1\|1\|4\|24\|366
chr8_1	exon	76712273	76712977	76712273	ID=Msa1215460-mRNA-1:exon:26394;Parent=Msa1215460-mRNA-1
chr8_1	exon	76713140	76713191	76713140	ID=Msa1215460-mRNA-1:exon:26393;Parent=Msa1215460-mRNA-1
chr8_1	exon	76714186	76714275	76714186	ID=Msa1215460-mRNA-1:exon:26392;Parent=Msa1215460-mRNA-1
chr8_1	exon	76714401	76714972	76714401	ID=Msa1215460-mRNA-1:exon:26391;Parent=Msa1215460-mRNA-1
chr8_1	five_prime_UTR	76714679	76714972	76714679	ID=Msa1215460-mRNA-1:five_prime_utr;Parent=Msa1215460-mRNA-1
chr8_1	CDS	76714401	76714678	76714401	ID=Msa1215460-mRNA-1:cds;Parent=Msa1215460-mRNA-1
chr8_1	CDS	76714186	76714275	76714186	ID=Msa1215460-mRNA-1:cds;Parent=Msa1215460-mRNA-1
chr8_1	CDS	76713140	76713191	76713140	ID=Msa1215460-mRNA-1:cds;Parent=Msa1215460-mRNA-1
chr8_1	CDS	76712297	76712977	76712297	ID=Msa1215460-mRNA-1:cds;Parent=Msa1215460-mRNA-1
chr8_1	three_prime_UTR	76712273	76712296	76712273	ID=Msa1215460-mRNA-1:three_prime_utr;Parent=Msa1215460-mRNA-1

Gene Sequence

>Msa1215460

ATGAACTATTGTGAGACAAATTGTGTTGTCAAGAGGAACAAAGGAGGTAAAGAAACTGATGAAACCTTGTCTTTTACACAGTCCAAGGATAATATAAAGATGTCGCATGATCGGAACAAAGGAAAACAACAACGTTACGCTCTTGTGTCTTTTATGGAGCTACCGAATTATATGAAGGATAATGAATATATTTTACGTTATTACAGAGCCAATTGGCCTTTGAAAGAAGCTTTCTTCAGTCTCTTTCGTTGGCATAATGAAACTTTGAATGTTTGGACACATTTAGTTGGATTTATTCTGTTTCTTGGGTTGACCTTGGCCAATTTGATGAAGCCTCATGTGGTGGATCTCTTACAACAATTTACAAGGTCTATCTCTTCAGGTGGTGAAAAAAATGTTTCTGATAGCATCAAAGTTCTGGGAACGGCGTTACTCTTTGATTTAAACCATCAATTACCATTGGCAATGGAAGTTGAATCCTTAGAATTTGTTATAGCAAGGTGGCCATTCTTTGTCTTCTTAGGTGGTTCAATGTTCTGTCTCCTCTCTAGCAGCATTTGCCACCTCTTTTCATGTCACTCCCATGACTTAAACCTGTTTCTGTTAAGAATAGATTATGTCGGAATCGCTGTCATGATCATAACCTCATTCTTCCCTCAGATTTACTATGTTTTCCTATGTCAACCTCATTGGCAACTCATCTACCTAGCCGGTATTACAGCCATGGGACTATTCACCATAGTAACATTGCTTTCCCCATCACTTTCTACCGGTAAACACCGCGCATTTCGAGCTATGTTGTTCTGTTCAATGGGACTTTTCGGCATTGTGCCTGCAGTTCATGCTTGTGTTGCAAATTGGGGAAATCCTCGACGCAATGTTACACTAGCATATGAATGTGTCATGGCATTGTCTTACTTGATAGGGACTTTGTTCTATGTGACGCGGATACCGGAAAGATGGAGGCCTGGTTGGTTTGATTTAGCAGGACATAGTCATCAAATATTTCATATTTTGGTTGTGGTTGGTGCATTATCACATTATGCAGCTACACTTAAAATGCTAGAATGGCGTGACACTTTTGGGTGTGACAAGGCTTAA

Protein sequence

>Msa1215460

MNYCETNCVVKRNKGGKETDETLSFTQSKDNIKMSHDRNKGKQQRYALVSFMELPNYMKDNEYILRYYRANWPLKEAFFSLFRWHNETLNVWTHLVGFILFLGLTLANLMKPHVVDLLQQFTRSISSGGEKNVSDSIKVLGTALLFDLNHQLPLAMEVESLEFVIARWPFFVFLGGSMFCLLSSSICHLFSCHSHDLNLFLLRIDYVGIAVMIITSFFPQIYYVFLCQPHWQLIYLAGITAMGLFTIVTLLSPSLSTGKHRAFRAMLFCSMGLFGIVPAVHACVANWGNPRRNVTLAYECVMALSYLIGTLFYVTRIPERWRPGWFDLAGHSHQIFHILVVVGALSHYAATLKMLEWRDTFGCDKA*