Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330680 | XP_003609428.2 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330680 | sp|Q93ZH9|HHP1_ARATH | 55.000 | 360 | 115 | 3 | 4 | 363 | 20 | 332 | 9.41e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330680 | G7JFE9 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028610 | Msa1330680 | 0.804657 | 1.944752e-49 | -8.615850e-47 |
| Msa0035090 | Msa1330680 | 0.825535 | 4.446532e-54 | -8.615850e-47 |
| Msa0094060 | Msa1330680 | 0.819194 | 1.319755e-52 | -8.615850e-47 |
| Msa0096230 | Msa1330680 | 0.830875 | 2.295506e-55 | -8.615850e-47 |
| Msa0624890 | Msa1330680 | 0.800104 | 1.685370e-48 | -8.615850e-47 |
| Msa0681040 | Msa1330680 | 0.801940 | 7.102695e-49 | -8.615850e-47 |
| Msa0830410 | Msa1330680 | 0.804847 | 1.774821e-49 | -8.615850e-47 |
| Msa0130120 | Msa1330680 | 0.825663 | 4.145469e-54 | -8.615850e-47 |
| Msa0175900 | Msa1330680 | 0.825782 | 3.885903e-54 | -8.615850e-47 |
| Msa0207530 | Msa1330680 | 0.836377 | 9.695567e-57 | -8.615850e-47 |
| Msa0207900 | Msa1330680 | 0.835212 | 1.913207e-56 | -8.615850e-47 |
| Msa0224700 | Msa1330680 | 0.804600 | 1.998578e-49 | -8.615850e-47 |
| Msa0230400 | Msa1330680 | 0.802318 | 5.937500e-49 | -8.615850e-47 |
| Msa1232860 | Msa1330680 | 0.825780 | 3.888896e-54 | -8.615850e-47 |
| Msa1275290 | Msa1330680 | 0.821140 | 4.729578e-53 | -8.615850e-47 |
| Msa1301170 | Msa1330680 | 0.980961 | 1.922212e-151 | -8.615850e-47 |
| Msa1302920 | Msa1330680 | 0.803753 | 2.999501e-49 | -8.615850e-47 |
| Msa1313460 | Msa1330680 | 0.819124 | 1.369389e-52 | -8.615850e-47 |
| Msa1330680 | Msa1352820 | 0.800880 | 1.171076e-48 | -8.615850e-47 |
| Msa1330680 | Msa1398860 | 0.802813 | 4.695080e-49 | -8.615850e-47 |
| Msa1330680 | Msa1439160 | 0.802153 | 6.421132e-49 | -8.615850e-47 |
| Msa0392410 | Msa1330680 | 0.856460 | 3.169006e-62 | -8.615850e-47 |
| Msa0392450 | Msa1330680 | 0.843820 | 1.107678e-58 | -8.615850e-47 |
| Msa0392480 | Msa1330680 | 0.851558 | 8.208379e-61 | -8.615850e-47 |
| Msa0420080 | Msa1330680 | 0.805807 | 1.116728e-49 | -8.615850e-47 |
| Msa0265780 | Msa1330680 | 0.814064 | 1.863404e-51 | -8.615850e-47 |
| Msa0303780 | Msa1330680 | 0.817938 | 2.542834e-52 | -8.615850e-47 |
| Msa1125100 | Msa1330680 | 0.803100 | 4.095410e-49 | -8.615850e-47 |
| Msa1125150 | Msa1330680 | 0.806916 | 6.520481e-50 | -8.615850e-47 |
| Msa1178470 | Msa1330680 | 0.835631 | 1.499709e-56 | -8.615850e-47 |
| Msa1215140 | Msa1330680 | 0.946441 | 4.592842e-105 | -8.615850e-47 |
| Msa1215460 | Msa1330680 | 0.942710 | 4.436513e-102 | -8.615850e-47 |
| Msa1221690 | Msa1330680 | 0.830408 | 2.987395e-55 | -8.615850e-47 |
| Msa0487560 | Msa1330680 | 0.854830 | 9.476897e-62 | -8.615850e-47 |
| Msa0487620 | Msa1330680 | 0.854213 | 1.429850e-61 | -8.615850e-47 |
| Msa0542030 | Msa1330680 | 0.809009 | 2.338860e-50 | -8.615850e-47 |
| Msa0601710 | Msa1330680 | 0.815651 | 8.290287e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330680 | MtrunA17_Chr4g0064481 | 99.180 | 366 | 2 | 1 | 1 | 366 | 1 | 365 | 0.0 | 753 |
| Msa1330680 | MtrunA17_Chr2g0305481 | 49.258 | 337 | 143 | 5 | 39 | 358 | 4 | 329 | 8.01e-107 | 317 |
| Msa1330680 | MtrunA17_Chr5g0401021 | 45.480 | 354 | 159 | 7 | 42 | 363 | 28 | 379 | 1.53e-96 | 292 |
| Msa1330680 | MtrunA17_Chr3g0134921 | 41.371 | 394 | 184 | 6 | 17 | 363 | 3 | 396 | 1.71e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330680 | AT5G20270.1 | 55.000 | 360 | 115 | 3 | 4 | 363 | 20 | 332 | 9.57e-139 | 398 |
| Msa1330680 | AT4G37680.3 | 43.401 | 394 | 179 | 9 | 10 | 363 | 1 | 390 | 1.72e-98 | 298 |
| Msa1330680 | AT4G37680.4 | 43.401 | 394 | 179 | 9 | 10 | 363 | 1 | 390 | 1.72e-98 | 298 |
| Msa1330680 | AT2G24150.1 | 42.614 | 352 | 179 | 5 | 10 | 356 | 1 | 334 | 8.43e-98 | 294 |
| Msa1330680 | AT4G37680.1 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1330680 | AT4G37680.5 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1330680 | AT4G37680.2 | 43.750 | 384 | 174 | 8 | 18 | 363 | 6 | 385 | 1.60e-97 | 295 |
| Msa1330680 | AT4G30850.2 | 44.543 | 339 | 163 | 4 | 37 | 358 | 20 | 350 | 1.37e-96 | 291 |
| Msa1330680 | AT4G30850.1 | 44.543 | 339 | 163 | 4 | 37 | 358 | 20 | 350 | 1.37e-96 | 291 |
| Msa1330680 | AT4G38320.1 | 43.164 | 373 | 170 | 8 | 18 | 352 | 6 | 374 | 2.21e-91 | 279 |
| Msa1330680 | AT2G24150.2 | 51.295 | 193 | 94 | 0 | 165 | 357 | 54 | 246 | 1.73e-69 | 219 |
| Msa1330680 | AT2G40710.1 | 53.763 | 93 | 43 | 0 | 271 | 363 | 1 | 93 | 3.89e-29 | 108 |
| Msa1330680 | AT4G38290.1 | 59.459 | 74 | 29 | 1 | 291 | 363 | 35 | 108 | 1.89e-25 | 99.4 |
Find 104 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAAATATTTCATATTT+TGG | 0.119405 | 8_4:+49928153 | Msa1330680:CDS |
| TGCACCAACTGCAGCATTTA+AGG | 0.156919 | 8_4:-49925668 | None:intergenic |
| GTTGGATTTATTCTGTTTCT+TGG | 0.171486 | 8_4:+49926287 | Msa1330680:CDS |
| TTCATGCTTGTGTTGCAAAT+TGG | 0.232497 | 8_4:+49927996 | Msa1330680:CDS |
| TGGCCATTCTTTGTCTTCTT+AGG | 0.247470 | 8_4:+49927659 | Msa1330680:CDS |
| CAACCAGGCCTCCATCTTTC+CGG | 0.258607 | 8_4:-49928109 | None:intergenic |
| TCAGCCATCATAAATTAGTT+TGG | 0.266724 | 8_4:+49925582 | None:intergenic |
| GTACATAGGTCTATCTCTTC+AGG | 0.282931 | 8_4:+49927356 | Msa1330680:intron |
| CCTTGCTATAACAAATTCTA+AGG | 0.299308 | 8_4:-49927636 | None:intergenic |
| GTGTGACAAGGCTTAAATTA+AGG | 0.306890 | 8_4:+49928243 | Msa1330680:exon |
| AACACAAACAACCTTTGATT+TGG | 0.307947 | 8_4:+49925818 | Msa1330680:five_prime_UTR |
| ATGGCATTGTCTTACTTGAT+AGG | 0.313226 | 8_4:+49928061 | Msa1330680:CDS |
| CACAATAGTTCATCTCTGTT+TGG | 0.326565 | 8_4:-49925867 | None:intergenic |
| CACATGAGGCTTCATCAAAT+TGG | 0.331471 | 8_4:-49926321 | None:intergenic |
| TTGGATTTATTCTGTTTCTT+GGG | 0.332306 | 8_4:+49926288 | Msa1330680:CDS |
| AATCTATTCTTAACAGAAAC+AGG | 0.333630 | 8_4:-49927751 | None:intergenic |
| CTAGAATGGCGTGACACTTT+TGG | 0.338813 | 8_4:+49928220 | Msa1330680:CDS |
| AGCTATGTTGTTCTGTTCAA+TGG | 0.349396 | 8_4:+49927949 | Msa1330680:CDS |
| TTCTGATAGCATCAAAGTTC+TGG | 0.354226 | 8_4:+49927394 | Msa1330680:CDS |
| TCGAAATGCGCGGTGTTTAC+CGG | 0.364215 | 8_4:-49927927 | None:intergenic |
| CGACATCTTTATATTATCCT+TGG | 0.366302 | 8_4:-49925959 | None:intergenic |
| CAGCCATCATAAATTAGTTT+GGG | 0.367155 | 8_4:+49925583 | Msa1330680:five_prime_UTR |
| TCATGCTTGTGTTGCAAATT+GGG | 0.369516 | 8_4:+49927997 | Msa1330680:CDS |
| TCATTATCCTTCATATAATT+CGG | 0.373033 | 8_4:-49926039 | None:intergenic |
| CCATTGCCAATGGTAATTGA+TGG | 0.375582 | 8_4:-49927604 | None:intergenic |
| ATAATGAAACTTTGAATGTT+TGG | 0.388241 | 8_4:+49926130 | Msa1330680:CDS |
| AGCTTCTTTCAAAGGCCAAT+TGG | 0.392420 | 8_4:-49926085 | None:intergenic |
| GCACCAACTGCAGCATTTAA+GGG | 0.425405 | 8_4:-49925667 | None:intergenic |
| GTTCTATGTGACGCGGATAC+CGG | 0.430826 | 8_4:+49928090 | Msa1330680:CDS |
| CTTTCTTCAGTCTCTTTCGT+TGG | 0.437703 | 8_4:+49926106 | Msa1330680:CDS |
| CCTGGTTGGTTTGATTTAGC+AGG | 0.442111 | 8_4:+49928124 | Msa1330680:CDS |
| TCTGTTTCTTGGGTTGACCT+TGG | 0.451875 | 8_4:+49926298 | Msa1330680:CDS |
| TACGTTATTACAGAGCCAAT+TGG | 0.471460 | 8_4:+49926070 | Msa1330680:CDS |
| ACACTCTCCTCCGTAAGGTT+TGG | 0.472006 | 8_4:-49925642 | None:intergenic |
| GCTATGTTGTTCTGTTCAAT+GGG | 0.476457 | 8_4:+49927950 | Msa1330680:CDS |
| CCATTCTTTGTCTTCTTAGG+TGG | 0.483745 | 8_4:+49927662 | Msa1330680:CDS |
| TAGTCCCATGGCTGTAATAC+CGG | 0.489415 | 8_4:-49927867 | None:intergenic |
| CTACACTTAAAATGCTAGAA+TGG | 0.493476 | 8_4:+49928206 | Msa1330680:CDS |
| CAGAAACAGGTTTAAGTCAT+GGG | 0.494110 | 8_4:-49927738 | None:intergenic |
| AAGGTTTGGCACTATGTATG+TGG | 0.496101 | 8_4:-49925628 | None:intergenic |
| CGGAAAGATGGAGGCCTGGT+TGG | 0.498832 | 8_4:+49928110 | Msa1330680:CDS |
| CTGAAGAAAGCTTCTTTCAA+AGG | 0.500853 | 8_4:-49926093 | None:intergenic |
| AGGTTTGGCACTATGTATGT+GGG | 0.502161 | 8_4:-49925627 | None:intergenic |
| ATCTCTTACAACAATTTACA+AGG | 0.502630 | 8_4:+49926348 | Msa1330680:CDS |
| TGGCATTGTCTTACTTGATA+GGG | 0.509976 | 8_4:+49928062 | Msa1330680:CDS |
| ACAGAAACAGGTTTAAGTCA+TGG | 0.515069 | 8_4:-49927739 | None:intergenic |
| TTTAAACCATCAATTACCAT+TGG | 0.515618 | 8_4:+49927598 | Msa1330680:CDS |
| CTTTCCCCATCACTTTCTAC+CGG | 0.516838 | 8_4:+49927908 | Msa1330680:CDS |
| GGTGGCAAATGCTGCTAGAG+AGG | 0.518257 | 8_4:-49927700 | None:intergenic |
| CTGTTAAGAATAGATTATGT+CGG | 0.524523 | 8_4:+49927758 | Msa1330680:CDS |
| TGGGGAAAGCAATGTTACTA+TGG | 0.530611 | 8_4:-49927894 | None:intergenic |
| ATACATAGTGCCAAACCTTA+CGG | 0.534222 | 8_4:+49925632 | Msa1330680:five_prime_UTR |
| AGACCCAAACTAATTTATGA+TGG | 0.535015 | 8_4:-49925586 | None:intergenic |
| TGACGCGGATACCGGAAAGA+TGG | 0.537670 | 8_4:+49928098 | Msa1330680:CDS |
| CCTTAGAATTTGTTATAGCA+AGG | 0.538068 | 8_4:+49927636 | Msa1330680:CDS |
| GTTTACCGGTAGAAAGTGAT+GGG | 0.539453 | 8_4:-49927913 | None:intergenic |
| ATTTCTCTGACTTGGTTGTG+TGG | 0.539970 | 8_4:-49925725 | None:intergenic |
| CCATCAATTACCATTGGCAA+TGG | 0.541784 | 8_4:+49927604 | Msa1330680:CDS |
| CCACCTAAGAAGACAAAGAA+TGG | 0.542364 | 8_4:-49927662 | None:intergenic |
| GAGCATATATTTCTCTGACT+TGG | 0.546616 | 8_4:-49925733 | None:intergenic |
| ATATAAAGATGTCGCATGAT+CGG | 0.549561 | 8_4:+49925968 | Msa1330680:CDS |
| AGGAAAACATAGTAAATCTG+AGG | 0.556599 | 8_4:-49927812 | None:intergenic |
| ATCAAACAAAACCAAATCAA+AGG | 0.558711 | 8_4:-49925829 | None:intergenic |
| CATGCTTGTGTTGCAAATTG+GGG | 0.564814 | 8_4:+49927998 | Msa1330680:CDS |
| TGTTTACCGGTAGAAAGTGA+TGG | 0.568335 | 8_4:-49927914 | None:intergenic |
| ATACCGGAAAGATGGAGGCC+TGG | 0.568351 | 8_4:+49928106 | Msa1330680:CDS |
| GCAACACAAGCATGAACTGC+AGG | 0.575233 | 8_4:-49927989 | None:intergenic |
| CTTGGACTGTGTAAAAGACA+AGG | 0.577522 | 8_4:-49925941 | None:intergenic |
| GGGACACACTCTCCTCCGTA+AGG | 0.578007 | 8_4:-49925647 | None:intergenic |
| GATTCAACTTCCATTGCCAA+TGG | 0.580416 | 8_4:-49927614 | None:intergenic |
| TGTTGATGATGGAGTAATGA+GGG | 0.582660 | 8_4:-49925697 | None:intergenic |
| GTGTGGCTAAATGTTGATGA+TGG | 0.583455 | 8_4:-49925708 | None:intergenic |
| CATGGGAGTGACATGAAAAG+AGG | 0.583926 | 8_4:-49927721 | None:intergenic |
| GGAGCTACCGAATTATATGA+AGG | 0.585057 | 8_4:+49926032 | Msa1330680:CDS |
| TGGCAACTCATCTACCTAGC+CGG | 0.586984 | 8_4:+49927848 | Msa1330680:CDS |
| TGTGTTGTCAAGAGGAACAA+AGG | 0.596024 | 8_4:+49925898 | Msa1330680:CDS |
| GGTTTGGCACTATGTATGTG+GGG | 0.597181 | 8_4:-49925626 | None:intergenic |
| GTTGCCAATGAGGTTGACAT+AGG | 0.600058 | 8_4:-49927832 | None:intergenic |
| CCATGGCTGTAATACCGGCT+AGG | 0.606682 | 8_4:-49927862 | None:intergenic |
| GGAAAACATAGTAAATCTGA+GGG | 0.611187 | 8_4:-49927811 | None:intergenic |
| TGTAAGAGATCCACCACATG+AGG | 0.615952 | 8_4:-49926335 | None:intergenic |
| TAGAATTTGTTATAGCAAGG+TGG | 0.617513 | 8_4:+49927639 | Msa1330680:CDS |
| AGGTAGATGAGTTGCCAATG+AGG | 0.623505 | 8_4:-49927842 | None:intergenic |
| ATGTCGCATGATCGGAACAA+AGG | 0.623538 | 8_4:+49925976 | Msa1330680:CDS |
| CGCGGATACCGGAAAGATGG+AGG | 0.624928 | 8_4:+49928101 | Msa1330680:CDS |
| CCTGCTAAATCAAACCAACC+AGG | 0.625235 | 8_4:-49928124 | None:intergenic |
| TGTCCCTTAAATGCTGCAGT+TGG | 0.633833 | 8_4:+49925664 | Msa1330680:five_prime_UTR |
| AGACAAATTGTGTTGTCAAG+AGG | 0.634394 | 8_4:+49925890 | Msa1330680:CDS |
| TTTGATGAAGCCTCATGTGG+TGG | 0.642283 | 8_4:+49926325 | Msa1330680:CDS |
| ACTAGCATATGAATGTGTCA+TGG | 0.642425 | 8_4:+49928042 | Msa1330680:CDS |
| ACAACATAGCTCGAAATGCG+CGG | 0.643746 | 8_4:-49927937 | None:intergenic |
| CTAGCCGGTATTACAGCCAT+GGG | 0.645941 | 8_4:+49927863 | Msa1330680:CDS |
| GTAAATCTGAGGGAAGAATG+AGG | 0.646981 | 8_4:-49927801 | None:intergenic |
| GGGAGTGACATGAAAAGAGG+TGG | 0.647977 | 8_4:-49927718 | None:intergenic |
| AGGCTTCATCAAATTGGCCA+AGG | 0.660901 | 8_4:-49926315 | None:intergenic |
| TACTATGGTGAATAGTCCCA+TGG | 0.663061 | 8_4:-49927879 | None:intergenic |
| CATAGGTCTATCTCTTCAGG+TGG | 0.665575 | 8_4:+49927359 | Msa1330680:intron |
| CAATTTGATGAAGCCTCATG+TGG | 0.668778 | 8_4:+49926322 | Msa1330680:CDS |
| GGACTTTGTTCTATGTGACG+CGG | 0.692634 | 8_4:+49928083 | Msa1330680:CDS |
| ATGTTGATGATGGAGTAATG+AGG | 0.700787 | 8_4:-49925698 | None:intergenic |
| GTTGTCAAGAGGAACAAAGG+AGG | 0.716326 | 8_4:+49925901 | Msa1330680:CDS |
| CATAGTGCCAAACCTTACGG+AGG | 0.733527 | 8_4:+49925635 | Msa1330680:five_prime_UTR |
| TTTACCGGTAGAAAGTGATG+GGG | 0.740060 | 8_4:-49927912 | None:intergenic |
| GCTAGTGTAACATTGCGTCG+AGG | 0.746159 | 8_4:-49928025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATCTATTTTTTTTTTTTT+TGG | + | chr8_4:49926182-49926201 | Msa1330680:intron | 10.0% |
| !!! | AAATTTATTTAGTTTTCAAT+TGG | - | chr8_4:49926875-49926894 | None:intergenic | 10.0% |
| !! | CTAAAAATTGTATGTTTATA+GGG | + | chr8_4:49926623-49926642 | Msa1330680:intron | 15.0% |
| !!! | AAATTTTATTAGCAGAAATT+CGG | + | chr8_4:49926889-49926908 | Msa1330680:intron | 15.0% |
| !!! | TGTTTTTATATTAGTCAATT+TGG | + | chr8_4:49927246-49927265 | Msa1330680:intron | 15.0% |
| !!! | TCATCAAATATTTCATATTT+TGG | + | chr8_4:49928153-49928172 | Msa1330680:CDS | 15.0% |
| !! | TTATTCAAAAATGAAGATGA+TGG | - | chr8_4:49925758-49925777 | None:intergenic | 20.0% |
| !! | TCATTATCCTTCATATAATT+CGG | - | chr8_4:49926042-49926061 | None:intergenic | 20.0% |
| !! | ATAATGAAACTTTGAATGTT+TGG | + | chr8_4:49926130-49926149 | Msa1330680:CDS | 20.0% |
| !! | GCTAAAAATTGTATGTTTAT+AGG | + | chr8_4:49926622-49926641 | Msa1330680:intron | 20.0% |
| !!! | TTGTTTACTTTTAACTTTAG+AGG | + | chr8_4:49926817-49926836 | Msa1330680:intron | 20.0% |
| !!! | TATTTAGTTTTCAATTGGTA+AGG | - | chr8_4:49926870-49926889 | None:intergenic | 20.0% |
| !! | TTCGGAAAACTAAATAAATT+TGG | + | chr8_4:49926907-49926926 | Msa1330680:intron | 20.0% |
| !!! | ATTGGTTTAAATTCAAGTTT+AGG | + | chr8_4:49927077-49927096 | Msa1330680:intron | 20.0% |
| !!! | CATATTATCTTTTTGTACAT+AGG | + | chr8_4:49927342-49927361 | Msa1330680:intron | 20.0% |
| !!! | AATATTTCATATTTTGGTTG+TGG | + | chr8_4:49928159-49928178 | Msa1330680:CDS | 20.0% |
| ! | ATCAAACAAAACCAAATCAA+AGG | - | chr8_4:49925832-49925851 | None:intergenic | 25.0% |
| !!! | TGATTTGGTTTTGTTTGATT+TGG | + | chr8_4:49925833-49925852 | Msa1330680:five_prime_UTR | 25.0% |
| !! | TTGGATTTATTCTGTTTCTT+GGG | + | chr8_4:49926288-49926307 | Msa1330680:CDS | 25.0% |
| ! | ATCTCTTACAACAATTTACA+AGG | + | chr8_4:49926348-49926367 | Msa1330680:CDS | 25.0% |
| ! | TTTATGTGTTTATATGTGAG+AGG | + | chr8_4:49926405-49926424 | Msa1330680:intron | 25.0% |
| !!! | AACATACAATTTTTAGCACT+AGG | - | chr8_4:49926619-49926638 | None:intergenic | 25.0% |
| ! | TGTGAGTACAAAAATATTTC+TGG | + | chr8_4:49926661-49926680 | Msa1330680:intron | 25.0% |
| ! | TAACAATAACAACTAGATCT+TGG | + | chr8_4:49927051-49927070 | Msa1330680:intron | 25.0% |
| ! | AACAATAACAACTAGATCTT+GGG | + | chr8_4:49927052-49927071 | Msa1330680:intron | 25.0% |
| ! | CATAGAAACTTTAGTACTAT+TGG | - | chr8_4:49927123-49927142 | None:intergenic | 25.0% |
| !! | ACATGTAATTAACTTGAACA+AGG | + | chr8_4:49927156-49927175 | Msa1330680:intron | 25.0% |
| !! | CATGTAATTAACTTGAACAA+GGG | + | chr8_4:49927157-49927176 | Msa1330680:intron | 25.0% |
| ! | ACAAAACTAGAAGCTAATAT+TGG | - | chr8_4:49927216-49927235 | None:intergenic | 25.0% |
| ! | TATATTAGTCAATTTGGATG+AGG | + | chr8_4:49927252-49927271 | Msa1330680:intron | 25.0% |
| !! | TTTGGATGAGGATTTTTATT+AGG | + | chr8_4:49927264-49927283 | Msa1330680:intron | 25.0% |
| !! | TTAATAATTTGAGTTACCGA+CGG | + | chr8_4:49927443-49927462 | Msa1330680:intron | 25.0% |
| !!! | AGAAGTCGATTTCATTTTTT+CGG | - | chr8_4:49927479-49927498 | None:intergenic | 25.0% |
| ! | TTTAAACCATCAATTACCAT+TGG | + | chr8_4:49927598-49927617 | Msa1330680:CDS | 25.0% |
| ! | AATCTATTCTTAACAGAAAC+AGG | - | chr8_4:49927754-49927773 | None:intergenic | 25.0% |
| ! | CTGTTAAGAATAGATTATGT+CGG | + | chr8_4:49927758-49927777 | Msa1330680:CDS | 25.0% |
| ! | CAGCCATCATAAATTAGTTT+GGG | + | chr8_4:49925583-49925602 | Msa1330680:five_prime_UTR | 30.0% |
| AGACCCAAACTAATTTATGA+TGG | - | chr8_4:49925589-49925608 | None:intergenic | 30.0% | |
| AACACAAACAACCTTTGATT+TGG | + | chr8_4:49925818-49925837 | Msa1330680:five_prime_UTR | 30.0% | |
| CGACATCTTTATATTATCCT+TGG | - | chr8_4:49925962-49925981 | None:intergenic | 30.0% | |
| ATATAAAGATGTCGCATGAT+CGG | + | chr8_4:49925968-49925987 | Msa1330680:CDS | 30.0% | |
| !!! | TTTTTGGTTTTCATTCTGTC+TGG | + | chr8_4:49926198-49926217 | Msa1330680:intron | 30.0% |
| ATCCAACTAAATGTCTGAAA+AGG | - | chr8_4:49926274-49926293 | None:intergenic | 30.0% | |
| ! | GTTGGATTTATTCTGTTTCT+TGG | + | chr8_4:49926287-49926306 | Msa1330680:CDS | 30.0% |
| AAAGAATAAGAGAACCAATC+TGG | + | chr8_4:49926454-49926473 | Msa1330680:intron | 30.0% | |
| AAGCAAACATGACATGAAAA+TGG | + | chr8_4:49926973-49926992 | Msa1330680:intron | 30.0% | |
| ATGACATGAAAATGGTTTCT+TGG | + | chr8_4:49926981-49927000 | Msa1330680:intron | 30.0% | |
| ACAATAACAACTAGATCTTG+GGG | + | chr8_4:49927053-49927072 | Msa1330680:intron | 30.0% | |
| GCAAAATTAGTTGAGAATTG+TGG | - | chr8_4:49927323-49927342 | None:intergenic | 30.0% | |
| TGACAATGTAAGAATTTGCA+GGG | + | chr8_4:49927557-49927576 | Msa1330680:intron | 30.0% | |
| ! | CCTTGCTATAACAAATTCTA+AGG | - | chr8_4:49927639-49927658 | None:intergenic | 30.0% |
| !! | CCTTAGAATTTGTTATAGCA+AGG | + | chr8_4:49927636-49927655 | Msa1330680:CDS | 30.0% |
| !! | TAGAATTTGTTATAGCAAGG+TGG | + | chr8_4:49927639-49927658 | Msa1330680:CDS | 30.0% |
| GGAAAACATAGTAAATCTGA+GGG | - | chr8_4:49927814-49927833 | None:intergenic | 30.0% | |
| AGGAAAACATAGTAAATCTG+AGG | - | chr8_4:49927815-49927834 | None:intergenic | 30.0% | |
| !!! | TTTCATATTTTGGTTGTGGT+TGG | + | chr8_4:49928163-49928182 | Msa1330680:CDS | 30.0% |
| CTACACTTAAAATGCTAGAA+TGG | + | chr8_4:49928206-49928225 | Msa1330680:CDS | 30.0% | |
| ATACATAGTGCCAAACCTTA+CGG | + | chr8_4:49925632-49925651 | Msa1330680:five_prime_UTR | 35.0% | |
| !! | TGTTGATGATGGAGTAATGA+GGG | - | chr8_4:49925700-49925719 | None:intergenic | 35.0% |
| !! | ATGTTGATGATGGAGTAATG+AGG | - | chr8_4:49925701-49925720 | None:intergenic | 35.0% |
| GAGCATATATTTCTCTGACT+TGG | - | chr8_4:49925736-49925755 | None:intergenic | 35.0% | |
| CACAATAGTTCATCTCTGTT+TGG | - | chr8_4:49925870-49925889 | None:intergenic | 35.0% | |
| AGACAAATTGTGTTGTCAAG+AGG | + | chr8_4:49925890-49925909 | Msa1330680:CDS | 35.0% | |
| ! | TTACGCTCTTGTGTCTTTTA+TGG | + | chr8_4:49926011-49926030 | Msa1330680:CDS | 35.0% |
| TACGTTATTACAGAGCCAAT+TGG | + | chr8_4:49926070-49926089 | Msa1330680:CDS | 35.0% | |
| CTGAAGAAAGCTTCTTTCAA+AGG | - | chr8_4:49926096-49926115 | None:intergenic | 35.0% | |
| !! | TCTGTCTGGTGTTTTTGATT+AGG | + | chr8_4:49926212-49926231 | Msa1330680:intron | 35.0% |
| ! | TGCCTTTTCAGACATTTAGT+TGG | + | chr8_4:49926269-49926288 | Msa1330680:intron | 35.0% |
| ! | ATGCTTTCTGAGAAATGTTG+AGG | - | chr8_4:49926482-49926501 | None:intergenic | 35.0% |
| ACACCTTATACAATACACTC+TGG | + | chr8_4:49926593-49926612 | Msa1330680:intron | 35.0% | |
| !!! | ACTTTTAACTTTAGAGGAGC+TGG | + | chr8_4:49926823-49926842 | Msa1330680:intron | 35.0% |
| TTCAATTGGTAAGGTTACCA+AGG | - | chr8_4:49926861-49926880 | None:intergenic | 35.0% | |
| !!! | TATTGGTTTTGTCAACAGGA+CGG | - | chr8_4:49927106-49927125 | None:intergenic | 35.0% |
| !!! | GTACTATTGGTTTTGTCAAC+AGG | - | chr8_4:49927110-49927129 | None:intergenic | 35.0% |
| !! | AGTTTCTATGCAGTTTGTTG+TGG | + | chr8_4:49927133-49927152 | Msa1330680:intron | 35.0% |
| AACTGTCTAGCTAATAGCAT+AGG | + | chr8_4:49927289-49927308 | Msa1330680:intron | 35.0% | |
| ACTGTCTAGCTAATAGCATA+GGG | + | chr8_4:49927290-49927309 | Msa1330680:intron | 35.0% | |
| TTCTGATAGCATCAAAGTTC+TGG | + | chr8_4:49927394-49927413 | Msa1330680:CDS | 35.0% | |
| AACGCTTAGCAACGAAATTA+TGG | + | chr8_4:49927514-49927533 | Msa1330680:intron | 35.0% | |
| CTTAGCAACGAAATTATGGA+CGG | + | chr8_4:49927518-49927537 | Msa1330680:intron | 35.0% | |
| CTGACAATGTAAGAATTTGC+AGG | + | chr8_4:49927556-49927575 | Msa1330680:intron | 35.0% | |
| ATGTAAGAATTTGCAGGGAA+CGG | + | chr8_4:49927562-49927581 | Msa1330680:intron | 35.0% | |
| CAGAAACAGGTTTAAGTCAT+GGG | - | chr8_4:49927741-49927760 | None:intergenic | 35.0% | |
| ACAGAAACAGGTTTAAGTCA+TGG | - | chr8_4:49927742-49927761 | None:intergenic | 35.0% | |
| ! | TTTTCCTATGTCAACCTCAT+TGG | + | chr8_4:49927828-49927847 | Msa1330680:CDS | 35.0% |
| AGCTATGTTGTTCTGTTCAA+TGG | + | chr8_4:49927949-49927968 | Msa1330680:CDS | 35.0% | |
| GCTATGTTGTTCTGTTCAAT+GGG | + | chr8_4:49927950-49927969 | Msa1330680:CDS | 35.0% | |
| ! | TTCTGTTCAATGGGACTTTT+CGG | + | chr8_4:49927959-49927978 | Msa1330680:CDS | 35.0% |
| TTCATGCTTGTGTTGCAAAT+TGG | + | chr8_4:49927996-49928015 | Msa1330680:CDS | 35.0% | |
| TCATGCTTGTGTTGCAAATT+GGG | + | chr8_4:49927997-49928016 | Msa1330680:CDS | 35.0% | |
| ACTAGCATATGAATGTGTCA+TGG | + | chr8_4:49928042-49928061 | Msa1330680:CDS | 35.0% | |
| ATGGCATTGTCTTACTTGAT+AGG | + | chr8_4:49928061-49928080 | Msa1330680:CDS | 35.0% | |
| TGGCATTGTCTTACTTGATA+GGG | + | chr8_4:49928062-49928081 | Msa1330680:CDS | 35.0% | |
| GTGTGACAAGGCTTAAATTA+AGG | + | chr8_4:49928243-49928262 | Msa1330680:exon | 35.0% | |
| AGGTTTGGCACTATGTATGT+GGG | - | chr8_4:49925630-49925649 | None:intergenic | 40.0% | |
| AAGGTTTGGCACTATGTATG+TGG | - | chr8_4:49925631-49925650 | None:intergenic | 40.0% | |
| ! | GTGTGGCTAAATGTTGATGA+TGG | - | chr8_4:49925711-49925730 | None:intergenic | 40.0% |
| !! | ATTTCTCTGACTTGGTTGTG+TGG | - | chr8_4:49925728-49925747 | None:intergenic | 40.0% |
| TGTGTTGTCAAGAGGAACAA+AGG | + | chr8_4:49925898-49925917 | Msa1330680:CDS | 40.0% | |
| CTTGGACTGTGTAAAAGACA+AGG | - | chr8_4:49925944-49925963 | None:intergenic | 40.0% | |
| ! | CTTGTCTTTTACACAGTCCA+AGG | + | chr8_4:49925942-49925961 | Msa1330680:CDS | 40.0% |
| GGAGCTACCGAATTATATGA+AGG | + | chr8_4:49926032-49926051 | Msa1330680:CDS | 40.0% | |
| AGCTTCTTTCAAAGGCCAAT+TGG | - | chr8_4:49926088-49926107 | None:intergenic | 40.0% | |
| CTTTCTTCAGTCTCTTTCGT+TGG | + | chr8_4:49926106-49926125 | Msa1330680:CDS | 40.0% | |
| CACATGAGGCTTCATCAAAT+TGG | - | chr8_4:49926324-49926343 | None:intergenic | 40.0% | |
| CAATTTGATGAAGCCTCATG+TGG | + | chr8_4:49926322-49926341 | Msa1330680:CDS | 40.0% | |
| GAAATGTTGAGGAACCAGAT+TGG | - | chr8_4:49926471-49926490 | None:intergenic | 40.0% | |
| AGGCCAGAGTGTATTGTATA+AGG | - | chr8_4:49926599-49926618 | None:intergenic | 40.0% | |
| !! | GCTGGATCTCTAAAATACCT+TGG | + | chr8_4:49926841-49926860 | Msa1330680:intron | 40.0% |
| ACAACTAGATCTTGGGGAAT+TGG | + | chr8_4:49927059-49927078 | Msa1330680:intron | 40.0% | |
| GTACATAGGTCTATCTCTTC+AGG | + | chr8_4:49927356-49927375 | Msa1330680:intron | 40.0% | |
| TTTCGGTCTCTAATTTCCGT+CGG | - | chr8_4:49927462-49927481 | None:intergenic | 40.0% | |
| CCATTGCCAATGGTAATTGA+TGG | - | chr8_4:49927607-49927626 | None:intergenic | 40.0% | |
| CCATCAATTACCATTGGCAA+TGG | + | chr8_4:49927604-49927623 | Msa1330680:CDS | 40.0% | |
| GATTCAACTTCCATTGCCAA+TGG | - | chr8_4:49927617-49927636 | None:intergenic | 40.0% | |
| TGGCCATTCTTTGTCTTCTT+AGG | + | chr8_4:49927659-49927678 | Msa1330680:CDS | 40.0% | |
| CCACCTAAGAAGACAAAGAA+TGG | - | chr8_4:49927665-49927684 | None:intergenic | 40.0% | |
| CCATTCTTTGTCTTCTTAGG+TGG | + | chr8_4:49927662-49927681 | Msa1330680:CDS | 40.0% | |
| GTAAATCTGAGGGAAGAATG+AGG | - | chr8_4:49927804-49927823 | None:intergenic | 40.0% | |
| TACTATGGTGAATAGTCCCA+TGG | - | chr8_4:49927882-49927901 | None:intergenic | 40.0% | |
| TGGGGAAAGCAATGTTACTA+TGG | - | chr8_4:49927897-49927916 | None:intergenic | 40.0% | |
| TTTACCGGTAGAAAGTGATG+GGG | - | chr8_4:49927915-49927934 | None:intergenic | 40.0% | |
| GTTTACCGGTAGAAAGTGAT+GGG | - | chr8_4:49927916-49927935 | None:intergenic | 40.0% | |
| TGTTTACCGGTAGAAAGTGA+TGG | - | chr8_4:49927917-49927936 | None:intergenic | 40.0% | |
| CATGCTTGTGTTGCAAATTG+GGG | + | chr8_4:49927998-49928017 | Msa1330680:CDS | 40.0% | |
| ! | TAGAATGGCGTGACACTTTT+GGG | + | chr8_4:49928221-49928240 | Msa1330680:CDS | 40.0% |
| GGTTTGGCACTATGTATGTG+GGG | - | chr8_4:49925629-49925648 | None:intergenic | 45.0% | |
| TGTCCCTTAAATGCTGCAGT+TGG | + | chr8_4:49925664-49925683 | Msa1330680:five_prime_UTR | 45.0% | |
| GCACCAACTGCAGCATTTAA+GGG | - | chr8_4:49925670-49925689 | None:intergenic | 45.0% | |
| TGCACCAACTGCAGCATTTA+AGG | - | chr8_4:49925671-49925690 | None:intergenic | 45.0% | |
| GTTGTCAAGAGGAACAAAGG+AGG | + | chr8_4:49925901-49925920 | Msa1330680:CDS | 45.0% | |
| ATGTCGCATGATCGGAACAA+AGG | + | chr8_4:49925976-49925995 | Msa1330680:CDS | 45.0% | |
| !! | TCTGTTTCTTGGGTTGACCT+TGG | + | chr8_4:49926298-49926317 | Msa1330680:CDS | 45.0% |
| AGGCTTCATCAAATTGGCCA+AGG | - | chr8_4:49926318-49926337 | None:intergenic | 45.0% | |
| TTTGATGAAGCCTCATGTGG+TGG | + | chr8_4:49926325-49926344 | Msa1330680:CDS | 45.0% | |
| TGTAAGAGATCCACCACATG+AGG | - | chr8_4:49926338-49926357 | None:intergenic | 45.0% | |
| CATAGGTCTATCTCTTCAGG+TGG | + | chr8_4:49927359-49927378 | Msa1330680:intron | 45.0% | |
| CATGGGAGTGACATGAAAAG+AGG | - | chr8_4:49927724-49927743 | None:intergenic | 45.0% | |
| GTTGCCAATGAGGTTGACAT+AGG | - | chr8_4:49927835-49927854 | None:intergenic | 45.0% | |
| AGGTAGATGAGTTGCCAATG+AGG | - | chr8_4:49927845-49927864 | None:intergenic | 45.0% | |
| TAGTCCCATGGCTGTAATAC+CGG | - | chr8_4:49927870-49927889 | None:intergenic | 45.0% | |
| CTTTCCCCATCACTTTCTAC+CGG | + | chr8_4:49927908-49927927 | Msa1330680:CDS | 45.0% | |
| ACAACATAGCTCGAAATGCG+CGG | - | chr8_4:49927940-49927959 | None:intergenic | 45.0% | |
| GGACTTTGTTCTATGTGACG+CGG | + | chr8_4:49928083-49928102 | Msa1330680:CDS | 45.0% | |
| CCTGCTAAATCAAACCAACC+AGG | - | chr8_4:49928127-49928146 | None:intergenic | 45.0% | |
| !! | CCTGGTTGGTTTGATTTAGC+AGG | + | chr8_4:49928124-49928143 | Msa1330680:CDS | 45.0% |
| ! | CTAGAATGGCGTGACACTTT+TGG | + | chr8_4:49928220-49928239 | Msa1330680:CDS | 45.0% |
| !! | TGACACTTTTGGGTGTGACA+AGG | + | chr8_4:49928231-49928250 | Msa1330680:CDS | 45.0% |
| CATAGTGCCAAACCTTACGG+AGG | + | chr8_4:49925635-49925654 | Msa1330680:five_prime_UTR | 50.0% | |
| ACACTCTCCTCCGTAAGGTT+TGG | - | chr8_4:49925645-49925664 | None:intergenic | 50.0% | |
| ATATGCCAGCTGTTACCTGC+AGG | + | chr8_4:49926500-49926519 | Msa1330680:intron | 50.0% | |
| AATGACCTGCAGGTAACAGC+TGG | - | chr8_4:49926508-49926527 | None:intergenic | 50.0% | |
| AGCTGTTACCTGCAGGTCAT+TGG | + | chr8_4:49926507-49926526 | Msa1330680:intron | 50.0% | |
| ACACAACACCAATGACCTGC+AGG | - | chr8_4:49926518-49926537 | None:intergenic | 50.0% | |
| GGGAGTGACATGAAAAGAGG+TGG | - | chr8_4:49927721-49927740 | None:intergenic | 50.0% | |
| TGGCAACTCATCTACCTAGC+CGG | + | chr8_4:49927848-49927867 | Msa1330680:CDS | 50.0% | |
| CTAGCCGGTATTACAGCCAT+GGG | + | chr8_4:49927863-49927882 | Msa1330680:CDS | 50.0% | |
| TCGAAATGCGCGGTGTTTAC+CGG | - | chr8_4:49927930-49927949 | None:intergenic | 50.0% | |
| GCAACACAAGCATGAACTGC+AGG | - | chr8_4:49927992-49928011 | None:intergenic | 50.0% | |
| GCTAGTGTAACATTGCGTCG+AGG | - | chr8_4:49928028-49928047 | None:intergenic | 50.0% | |
| GTTCTATGTGACGCGGATAC+CGG | + | chr8_4:49928090-49928109 | Msa1330680:CDS | 50.0% | |
| GGTGGCAAATGCTGCTAGAG+AGG | - | chr8_4:49927703-49927722 | None:intergenic | 55.0% | |
| ! | CCATGGCTGTAATACCGGCT+AGG | - | chr8_4:49927865-49927884 | None:intergenic | 55.0% |
| CCTAGCCGGTATTACAGCCA+TGG | + | chr8_4:49927862-49927881 | Msa1330680:CDS | 55.0% | |
| TGACGCGGATACCGGAAAGA+TGG | + | chr8_4:49928098-49928117 | Msa1330680:CDS | 55.0% | |
| ATACCGGAAAGATGGAGGCC+TGG | + | chr8_4:49928106-49928125 | Msa1330680:CDS | 55.0% | |
| CAACCAGGCCTCCATCTTTC+CGG | - | chr8_4:49928112-49928131 | None:intergenic | 55.0% | |
| GGGACACACTCTCCTCCGTA+AGG | - | chr8_4:49925650-49925669 | None:intergenic | 60.0% | |
| CGCGGATACCGGAAAGATGG+AGG | + | chr8_4:49928101-49928120 | Msa1330680:CDS | 60.0% | |
| CGGAAAGATGGAGGCCTGGT+TGG | + | chr8_4:49928110-49928129 | Msa1330680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49925583 | 49928282 | 49925583 | ID=Msa1330680;Name=Msa1330680 |
| chr8_4 | mRNA | 49925583 | 49928282 | 49925583 | ID=Msa1330680-mRNA-1;Parent=Msa1330680;Name=Msa1330680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=294|1|1|1|1|1|4|24|366 |
| chr8_4 | exon | 49925583 | 49926154 | 49925583 | ID=Msa1330680-mRNA-1:exon:14486;Parent=Msa1330680-mRNA-1 |
| chr8_4 | exon | 49926280 | 49926369 | 49926280 | ID=Msa1330680-mRNA-1:exon:14487;Parent=Msa1330680-mRNA-1 |
| chr8_4 | exon | 49927364 | 49927415 | 49927364 | ID=Msa1330680-mRNA-1:exon:14488;Parent=Msa1330680-mRNA-1 |
| chr8_4 | exon | 49927578 | 49928282 | 49927578 | ID=Msa1330680-mRNA-1:exon:14489;Parent=Msa1330680-mRNA-1 |
| chr8_4 | five_prime_UTR | 49925583 | 49925876 | 49925583 | ID=Msa1330680-mRNA-1:five_prime_utr;Parent=Msa1330680-mRNA-1 |
| chr8_4 | CDS | 49925877 | 49926154 | 49925877 | ID=Msa1330680-mRNA-1:cds;Parent=Msa1330680-mRNA-1 |
| chr8_4 | CDS | 49926280 | 49926369 | 49926280 | ID=Msa1330680-mRNA-1:cds;Parent=Msa1330680-mRNA-1 |
| chr8_4 | CDS | 49927364 | 49927415 | 49927364 | ID=Msa1330680-mRNA-1:cds;Parent=Msa1330680-mRNA-1 |
| chr8_4 | CDS | 49927578 | 49928258 | 49927578 | ID=Msa1330680-mRNA-1:cds;Parent=Msa1330680-mRNA-1 |
| chr8_4 | three_prime_UTR | 49928259 | 49928282 | 49928259 | ID=Msa1330680-mRNA-1:three_prime_utr;Parent=Msa1330680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
