AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184800 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0184800 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184800 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 86 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_4:+74442388 None:intergenic
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_4:-74447352 Msa0184800:CDS
TTAAGAGCAAAGTGAATTTC+TGG 0.200028 1_4:-74447812 Msa0184800:five_prime_UTR
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_4:-74447381 Msa0184800:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_4:+74442336 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_4:-74447548 Msa0184800:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_4:-74447382 Msa0184800:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_4:-74447351 Msa0184800:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_4:-74445152 Msa0184800:intron
GCCGGTAGTTGCCCACATTC+CGG 0.329517 1_4:+74442317 None:intergenic
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_4:+74447628 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_4:+74447349 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_4:+74447304 None:intergenic
CCGGTAGTTGCCCACATTCC+GGG 0.372632 1_4:+74442318 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_4:-74442386 Msa0184800:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_4:+74442403 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_4:+74447735 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_4:-74447772 Msa0184800:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_4:+74447771 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_4:-74442594 Msa0184800:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_4:+74447706 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_4:+74445102 None:intergenic
TAAGAGCAAAGTGAATTTCT+GGG 0.439567 1_4:-74447811 Msa0184800:five_prime_UTR
CGGGTAATGAACTGATAATT+GGG 0.441172 1_4:+74442337 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_4:-74444971 Msa0184800:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_4:+74444923 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_4:-74444964 Msa0184800:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_4:-74442122 Msa0184800:three_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_4:+74442397 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_4:+74444922 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_4:-74447547 Msa0184800:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_4:-74447376 Msa0184800:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_4:-74445107 Msa0184800:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_4:+74442650 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_4:+74442176 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_4:-74447767 Msa0184800:five_prime_UTR
CCCGGAATGTGGGCAACTAC+CGG 0.486756 1_4:-74442318 Msa0184800:three_prime_UTR
AGAGATAGGATTGGAGCAAA+GGG 0.490946 1_4:-74447758 Msa0184800:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_4:-74447409 Msa0184800:CDS
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_4:-74447350 Msa0184800:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_4:+74442400 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_4:+74444959 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_4:+74442375 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_4:-74442336 Msa0184800:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_4:-74445151 Msa0184800:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_4:+74447350 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_4:+74447351 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_4:+74447834 None:intergenic
TAGAGATAGGATTGGAGCAA+AGG 0.526973 1_4:-74447759 Msa0184800:five_prime_UTR
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_4:+74447578 None:intergenic
CAAAGTGAATTTCTGGGGAA+GGG 0.535086 1_4:-74447805 Msa0184800:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_4:-74442329 Msa0184800:three_prime_UTR
CTGAGAACCATTGGTACTAT+CGG 0.543826 1_4:+74444864 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_4:-74444972 Msa0184800:CDS
CAAAATTGATTACACTATGC+CGG 0.554608 1_4:+74442299 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_4:+74442173 None:intergenic
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1_4:-74442539 Msa0184800:intron
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_4:+74444855 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_4:-74447380 Msa0184800:CDS
GCAAAGTGAATTTCTGGGGA+AGG 0.568201 1_4:-74447806 Msa0184800:five_prime_UTR
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_4:-74442615 Msa0184800:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_4:-74447377 Msa0184800:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_4:-74442328 Msa0184800:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_4:+74442370 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1_4:+74444874 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_4:+74445106 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_4:+74445105 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_4:-74447308 Msa0184800:intron
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_4:-74447640 Msa0184800:CDS
CTATAACAATGTAGATGGGA+AGG 0.593214 1_4:-74442678 Msa0184800:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_4:+74447550 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_4:+74444900 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_4:+74442270 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_4:+74444960 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_4:+74447563 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1_4:-74444871 Msa0184800:CDS
CTTAAATAAATGATGTGACA+TGG 0.625387 1_4:+74447830 None:intergenic
AAGAGCAAAGTGAATTTCTG+GGG 0.626095 1_4:-74447810 Msa0184800:five_prime_UTR
AGAACCATTGGTACTATCGG+TGG 0.637633 1_4:+74444867 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_4:+74442172 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1_4:+74444885 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_4:-74447637 Msa0184800:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_4:+74447642 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_4:+74442273 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_4:-74442648 Msa0184800:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_4:-74447401 Msa0184800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTTTTTTTTGAAA+CGG - chr1_4:74445531-74445550 Msa0184800:intron 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG + chr1_4:74447794-74447813 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG + chr1_4:74443419-74443438 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG + chr1_4:74444445-74444464 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG - chr1_4:74445119-74445138 Msa0184800:CDS 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG + chr1_4:74442422-74442441 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG + chr1_4:74442423-74442442 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG - chr1_4:74442425-74442444 Msa0184800:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG + chr1_4:74442431-74442450 None:intergenic 20.0%
!! CAATTTAATCTGAATTACAT+AGG + chr1_4:74442694-74442713 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG - chr1_4:74443330-74443349 Msa0184800:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG + chr1_4:74443615-74443634 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG + chr1_4:74444078-74444097 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG + chr1_4:74444079-74444098 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG - chr1_4:74444309-74444328 Msa0184800:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG + chr1_4:74444397-74444416 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG - chr1_4:74444405-74444424 Msa0184800:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG - chr1_4:74444406-74444425 Msa0184800:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG + chr1_4:74444446-74444465 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG + chr1_4:74444562-74444581 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG - chr1_4:74444649-74444668 Msa0184800:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1_4:74445117-74445136 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1_4:74445120-74445139 Msa0184800:CDS 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1_4:74445182-74445201 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG + chr1_4:74445515-74445534 None:intergenic 20.0%
!! TGGAGAAAAAAATACAATAA+GGG - chr1_4:74445604-74445623 Msa0184800:intron 20.0%
!! ATAACTTGGAAATCTAATAA+TGG + chr1_4:74445977-74445996 None:intergenic 20.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1_4:74446702-74446721 Msa0184800:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1_4:74447247-74447266 Msa0184800:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG - chr1_4:74447248-74447267 Msa0184800:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG + chr1_4:74442103-74442122 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG + chr1_4:74442227-74442246 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG + chr1_4:74442291-74442310 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG - chr1_4:74442290-74442309 Msa0184800:three_prime_UTR 25.0%
! TGAATGGAGATAAAAATGTT+GGG + chr1_4:74442339-74442358 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG + chr1_4:74442340-74442359 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG - chr1_4:74442340-74442359 Msa0184800:three_prime_UTR 25.0%
!! CATTTTTATCTCCATTCATT+GGG - chr1_4:74442341-74442360 Msa0184800:three_prime_UTR 25.0%
!! TCAACTTCTATTATCTCTTT+TGG - chr1_4:74442462-74442481 Msa0184800:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG - chr1_4:74442463-74442482 Msa0184800:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG - chr1_4:74442508-74442527 Msa0184800:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG - chr1_4:74442509-74442528 Msa0184800:intron 25.0%
! CATACTATTTCACTTTGTTA+AGG - chr1_4:74442775-74442794 Msa0184800:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG - chr1_4:74442826-74442845 Msa0184800:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG + chr1_4:74442993-74443012 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG + chr1_4:74443182-74443201 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG - chr1_4:74443201-74443220 Msa0184800:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG + chr1_4:74443367-74443386 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG - chr1_4:74443526-74443545 Msa0184800:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG - chr1_4:74443726-74443745 Msa0184800:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG + chr1_4:74443831-74443850 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG + chr1_4:74443879-74443898 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG - chr1_4:74444127-74444146 Msa0184800:intron 25.0%
! TGGACATGAAATTAATAACT+GGG - chr1_4:74444147-74444166 Msa0184800:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG - chr1_4:74444217-74444236 Msa0184800:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG - chr1_4:74444218-74444237 Msa0184800:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG + chr1_4:74444294-74444313 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG + chr1_4:74444526-74444545 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG - chr1_4:74444577-74444596 Msa0184800:intron 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1_4:74444866-74444885 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1_4:74445121-74445140 Msa0184800:CDS 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1_4:74445253-74445272 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1_4:74445411-74445430 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1_4:74445412-74445431 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1_4:74445449-74445468 Msa0184800:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1_4:74445504-74445523 None:intergenic 25.0%
! GTGGAGAAAAAAATACAATA+AGG - chr1_4:74445603-74445622 Msa0184800:intron 25.0%
! GGAGAAAAAAATACAATAAG+GGG - chr1_4:74445605-74445624 Msa0184800:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG - chr1_4:74445612-74445631 Msa0184800:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1_4:74445903-74445922 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1_4:74445904-74445923 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1_4:74445905-74445924 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1_4:74445906-74445925 Msa0184800:intron 25.0%
! AACAAACTTCAATGATAACT+TGG + chr1_4:74445991-74446010 None:intergenic 25.0%
! AATAGAACATGATAAAAACG+AGG - chr1_4:74446130-74446149 Msa0184800:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG + chr1_4:74446283-74446302 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1_4:74446335-74446354 Msa0184800:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1_4:74446381-74446400 Msa0184800:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG + chr1_4:74446610-74446629 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1_4:74446848-74446867 None:intergenic 25.0%
! GATGAAATAAGCATTTAAGA+AGG - chr1_4:74447151-74447170 Msa0184800:intron 25.0%
TTAAGAGCAAAGTGAATTTC+TGG - chr1_4:74442118-74442137 Msa0184800:three_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG - chr1_4:74442119-74442138 Msa0184800:three_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG + chr1_4:74442162-74442181 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG - chr1_4:74442163-74442182 Msa0184800:three_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG - chr1_4:74442293-74442312 Msa0184800:three_prime_UTR 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG - chr1_4:74442513-74442532 Msa0184800:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG - chr1_4:74442602-74442621 Msa0184800:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG - chr1_4:74442611-74442630 Msa0184800:CDS 30.0%
ACTTTCTGATTTATGTGGTT+CGG - chr1_4:74442831-74442850 Msa0184800:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG + chr1_4:74443147-74443166 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG + chr1_4:74443274-74443293 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG + chr1_4:74443402-74443421 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG - chr1_4:74443432-74443451 Msa0184800:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG + chr1_4:74443436-74443455 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG - chr1_4:74443552-74443571 Msa0184800:intron 30.0%
TGATACACAAACAAGCTATA+GGG + chr1_4:74443651-74443670 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG + chr1_4:74443652-74443671 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG + chr1_4:74443909-74443928 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG - chr1_4:74443908-74443927 Msa0184800:intron 30.0%
GTGGACATGAAATTAATAAC+TGG - chr1_4:74444146-74444165 Msa0184800:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG + chr1_4:74444196-74444215 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG - chr1_4:74444219-74444238 Msa0184800:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG + chr1_4:74444363-74444382 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG + chr1_4:74444387-74444406 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG - chr1_4:74444411-74444430 Msa0184800:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG - chr1_4:74444417-74444436 Msa0184800:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG + chr1_4:74444621-74444640 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG + chr1_4:74444622-74444641 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1_4:74444844-74444863 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1_4:74444958-74444977 Msa0184800:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1_4:74445216-74445235 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1_4:74445254-74445273 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG + chr1_4:74445295-74445314 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG - chr1_4:74445303-74445322 Msa0184800:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1_4:74445410-74445429 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1_4:74445413-74445432 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1_4:74445410-74445429 Msa0184800:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1_4:74445453-74445472 Msa0184800:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG + chr1_4:74445670-74445689 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG + chr1_4:74445671-74445690 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG + chr1_4:74445684-74445703 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG - chr1_4:74445712-74445731 Msa0184800:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1_4:74445936-74445955 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1_4:74445973-74445992 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG - chr1_4:74446049-74446068 Msa0184800:intron 30.0%
ACCTCAATAACCATATCATA+TGG + chr1_4:74446062-74446081 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG + chr1_4:74446280-74446299 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG + chr1_4:74446367-74446386 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1_4:74446498-74446517 Msa0184800:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1_4:74446501-74446520 Msa0184800:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1_4:74446502-74446521 Msa0184800:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1_4:74446561-74446580 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1_4:74446800-74446819 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG + chr1_4:74446891-74446910 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG + chr1_4:74446906-74446925 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG + chr1_4:74446907-74446926 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG + chr1_4:74446908-74446927 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1_4:74446910-74446929 Msa0184800:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG - chr1_4:74447057-74447076 Msa0184800:intron 30.0%
!! TTATTTCTGCCATAGTGTAA+GGG - chr1_4:74447058-74447077 Msa0184800:intron 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1_4:74447129-74447148 Msa0184800:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1_4:74447154-74447173 Msa0184800:intron 30.0%
AACATGATTGGCAATTTGAT+GGG + chr1_4:74447205-74447224 None:intergenic 30.0%
AAACATGATTGGCAATTTGA+TGG + chr1_4:74447206-74447225 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1_4:74447217-74447236 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG + chr1_4:74447376-74447395 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1_4:74447409-74447428 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1_4:74447412-74447431 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG + chr1_4:74447558-74447577 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG + chr1_4:74447634-74447653 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG + chr1_4:74447771-74447790 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG - chr1_4:74447808-74447827 Msa0184800:five_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG + chr1_4:74442099-74442118 None:intergenic 35.0%
AAGAGCAAAGTGAATTTCTG+GGG - chr1_4:74442120-74442139 Msa0184800:three_prime_UTR 35.0%
GCCATTAGATTCTTAGAGAT+AGG - chr1_4:74442158-74442177 Msa0184800:three_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG + chr1_4:74442198-74442217 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG + chr1_4:74442383-74442402 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG - chr1_4:74442382-74442401 Msa0184800:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG - chr1_4:74442383-74442402 Msa0184800:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG - chr1_4:74442839-74442858 Msa0184800:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG - chr1_4:74443150-74443169 Msa0184800:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG - chr1_4:74443236-74443255 Msa0184800:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG - chr1_4:74443490-74443509 Msa0184800:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG - chr1_4:74443569-74443588 Msa0184800:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG + chr1_4:74443588-74443607 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG + chr1_4:74443790-74443809 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG - chr1_4:74443789-74443808 Msa0184800:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG + chr1_4:74443818-74443837 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG + chr1_4:74443940-74443959 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG + chr1_4:74444285-74444304 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG + chr1_4:74444347-74444366 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG + chr1_4:74444348-74444367 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG - chr1_4:74444483-74444502 Msa0184800:intron 35.0%
TGAAAGTTATACCGACATTC+AGG - chr1_4:74444512-74444531 Msa0184800:intron 35.0%
GAAAGTTATACCGACATTCA+GGG - chr1_4:74444513-74444532 Msa0184800:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG - chr1_4:74444655-74444674 Msa0184800:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG - chr1_4:74444705-74444724 Msa0184800:intron 35.0%
!!! TTACTTTTTTGATAGCCCCT+CGG - chr1_4:74444747-74444766 Msa0184800:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG + chr1_4:74444898-74444917 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1_4:74444959-74444978 Msa0184800:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1_4:74445010-74445029 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1_4:74445290-74445309 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG + chr1_4:74445385-74445404 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1_4:74445409-74445428 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1_4:74445496-74445515 Msa0184800:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1_4:74445500-74445519 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG + chr1_4:74445669-74445688 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG + chr1_4:74445685-74445704 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG + chr1_4:74445701-74445720 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG + chr1_4:74445702-74445721 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG + chr1_4:74445802-74445821 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG - chr1_4:74446058-74446077 Msa0184800:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1_4:74446203-74446222 Msa0184800:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1_4:74446208-74446227 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG + chr1_4:74446299-74446318 None:intergenic 35.0%
AGAACGTTACAATAAACGAG+TGG - chr1_4:74446416-74446435 Msa0184800:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1_4:74446548-74446567 Msa0184800:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG + chr1_4:74446639-74446658 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG - chr1_4:74446638-74446657 Msa0184800:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1_4:74446823-74446842 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1_4:74446878-74446897 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1_4:74447004-74447023 Msa0184800:intron 35.0%
CTATAACAATGTAGATGGGA+AGG - chr1_4:74447252-74447271 Msa0184800:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1_4:74447315-74447334 Msa0184800:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG + chr1_4:74447371-74447390 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG + chr1_4:74447372-74447391 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG + chr1_4:74447373-74447392 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1_4:74447459-74447478 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1_4:74447545-74447564 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1_4:74447544-74447563 Msa0184800:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG + chr1_4:74447563-74447582 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG + chr1_4:74447596-74447615 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG - chr1_4:74447594-74447613 Msa0184800:CDS 35.0%
TTTACACAACTCAAGTGACT+CGG + chr1_4:74447663-74447682 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG + chr1_4:74447760-74447779 None:intergenic 35.0%
! CAAAGTGAATTTCTGGGGAA+GGG - chr1_4:74442125-74442144 Msa0184800:three_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+AGG - chr1_4:74442171-74442190 Msa0184800:three_prime_UTR 40.0%
AGAGATAGGATTGGAGCAAA+GGG - chr1_4:74442172-74442191 Msa0184800:three_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG + chr1_4:74442305-74442324 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG + chr1_4:74442370-74442389 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG - chr1_4:74442549-74442568 Msa0184800:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG - chr1_4:74442849-74442868 Msa0184800:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG + chr1_4:74443051-74443070 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG + chr1_4:74443052-74443071 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG - chr1_4:74443478-74443497 Msa0184800:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG + chr1_4:74443779-74443798 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG + chr1_4:74443782-74443801 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG - chr1_4:74443929-74443948 Msa0184800:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG + chr1_4:74443975-74443994 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG + chr1_4:74443985-74444004 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG - chr1_4:74443983-74444002 Msa0184800:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG + chr1_4:74443988-74444007 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG - chr1_4:74444042-74444061 Msa0184800:intron 40.0%
TATCTGCATCCAAGAACACA+TGG + chr1_4:74444054-74444073 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG + chr1_4:74444505-74444524 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG - chr1_4:74444605-74444624 Msa0184800:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG - chr1_4:74444699-74444718 Msa0184800:intron 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1_4:74444831-74444850 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1_4:74444923-74444942 Msa0184800:CDS 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1_4:74444930-74444949 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1_4:74445011-74445030 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG + chr1_4:74445069-74445088 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1_4:74445103-74445122 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1_4:74445104-74445123 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1_4:74445316-74445335 Msa0184800:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1_4:74445373-74445392 Msa0184800:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1_4:74445374-74445393 Msa0184800:intron 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1_4:74445457-74445476 Msa0184800:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG + chr1_4:74445468-74445487 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1_4:74446171-74446190 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1_4:74446187-74446206 None:intergenic 40.0%
TTATTCTACCATCCTCCATC+TGG + chr1_4:74446532-74446551 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1_4:74446656-74446675 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1_4:74446662-74446681 Msa0184800:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1_4:74446763-74446782 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1_4:74446764-74446783 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1_4:74446824-74446843 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1_4:74446950-74446969 Msa0184800:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG + chr1_4:74447038-74447057 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG - chr1_4:74447092-74447111 Msa0184800:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1_4:74447370-74447389 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG - chr1_4:74447474-74447493 Msa0184800:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG + chr1_4:74447478-74447497 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG + chr1_4:74447597-74447616 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG + chr1_4:74447761-74447780 None:intergenic 40.0%
! GCAAAGTGAATTTCTGGGGA+AGG - chr1_4:74442124-74442143 Msa0184800:three_prime_UTR 45.0%
AAAGACGGTGACCCAATGAA+TGG + chr1_4:74442355-74442374 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG - chr1_4:74442368-74442387 Msa0184800:exon 45.0%
GATAGAAAGGGTCGGTGTAA+AGG - chr1_4:74442521-74442540 Msa0184800:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG - chr1_4:74442548-74442567 Msa0184800:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG - chr1_4:74442550-74442569 Msa0184800:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG + chr1_4:74442582-74442601 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG - chr1_4:74442579-74442598 Msa0184800:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG + chr1_4:74442583-74442602 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG - chr1_4:74442580-74442599 Msa0184800:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG + chr1_4:74442584-74442603 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG - chr1_4:74443119-74443138 Msa0184800:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG + chr1_4:74443123-74443142 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG - chr1_4:74443255-74443274 Msa0184800:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG + chr1_4:74443800-74443819 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG + chr1_4:74443801-74443820 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG + chr1_4:74443974-74443993 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG + chr1_4:74443976-74443995 None:intergenic 45.0%
CTGCATTCAAAGAAACCGAG+GGG + chr1_4:74444765-74444784 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG + chr1_4:74444766-74444785 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG + chr1_4:74444767-74444786 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG - chr1_4:74444778-74444797 Msa0184800:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1_4:74444779-74444798 Msa0184800:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1_4:74444827-74444846 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1_4:74444828-74444847 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG - chr1_4:74444880-74444899 Msa0184800:CDS 45.0%
AAGAATCAACCGAGTGGCAT+TGG + chr1_4:74444892-74444911 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1_4:74444973-74444992 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1_4:74445033-74445052 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG + chr1_4:74445059-74445078 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG - chr1_4:74445059-74445078 Msa0184800:intron 45.0%
AGAACCATTGGTACTATCGG+TGG + chr1_4:74445066-74445085 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1_4:74445078-74445097 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG + chr1_4:74445578-74445597 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG + chr1_4:74445579-74445598 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG - chr1_4:74445580-74445599 Msa0184800:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG - chr1_4:74445581-74445600 Msa0184800:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG + chr1_4:74445681-74445700 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG + chr1_4:74445751-74445770 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG + chr1_4:74445799-74445818 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1_4:74445834-74445853 Msa0184800:intron 45.0%
TGCTATATGACTGACAGACC+AGG + chr1_4:74445855-74445874 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG - chr1_4:74446645-74446664 Msa0184800:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1_4:74446652-74446671 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1_4:74446650-74446669 Msa0184800:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1_4:74446751-74446770 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1_4:74446755-74446774 Msa0184800:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1_4:74446921-74446940 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1_4:74446921-74446940 Msa0184800:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1_4:74446955-74446974 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG + chr1_4:74447030-74447049 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1_4:74447098-74447117 Msa0184800:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1_4:74447099-74447118 Msa0184800:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1_4:74447283-74447302 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1_4:74447282-74447301 Msa0184800:intron 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1_4:74447536-74447555 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG - chr1_4:74447601-74447620 Msa0184800:CDS 45.0%
CAGTTCATTACCCGGAATGT+GGG - chr1_4:74447602-74447621 Msa0184800:CDS 45.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1_4:74446089-74446108 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1_4:74446472-74446491 Msa0184800:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1_4:74446473-74446492 Msa0184800:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG - chr1_4:74442363-74442382 Msa0184800:exon 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG - chr1_4:74442553-74442572 Msa0184800:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG - chr1_4:74442554-74442573 Msa0184800:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG - chr1_4:74442578-74442597 Msa0184800:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG - chr1_4:74442622-74442641 Msa0184800:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG + chr1_4:74442629-74442648 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG + chr1_4:74443134-74443153 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG - chr1_4:74443155-74443174 Msa0184800:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG + chr1_4:74443171-74443190 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG + chr1_4:74443452-74443471 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG + chr1_4:74443972-74443991 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG + chr1_4:74443973-74443992 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG + chr1_4:74444184-74444203 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG - chr1_4:74444763-74444782 Msa0184800:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1_4:74444823-74444842 Msa0184800:intron 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1_4:74444966-74444985 Msa0184800:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1_4:74444974-74444993 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG - chr1_4:74445584-74445603 Msa0184800:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG - chr1_4:74445631-74445650 Msa0184800:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG + chr1_4:74445641-74445660 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG + chr1_4:74445652-74445671 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG + chr1_4:74445750-74445769 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG + chr1_4:74445752-74445771 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1_4:74446514-74446533 Msa0184800:intron 50.0%
GTTGCCTATGCTGCTCCATT+TGG + chr1_4:74446928-74446947 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG - chr1_4:74447095-74447114 Msa0184800:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1_4:74447100-74447119 Msa0184800:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1_4:74447533-74447552 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG + chr1_4:74447660-74447679 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG + chr1_4:74447757-74447776 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG - chr1_4:74442529-74442548 Msa0184800:intron 55.0%
CAGACTCCTTGTCAAGGAGC+CGG - chr1_4:74443125-74443144 Msa0184800:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG - chr1_4:74444168-74444187 Msa0184800:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG + chr1_4:74444683-74444702 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG + chr1_4:74444688-74444707 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG + chr1_4:74445048-74445067 None:intergenic 55.0%
CCCCTGCGTCAATACCAAAG+AGG - chr1_4:74445747-74445766 Msa0184800:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG + chr1_4:74445796-74445815 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1_4:74446517-74446536 Msa0184800:intron 55.0%
AGGGTTGACCAGATGGAGGA+TGG - chr1_4:74446521-74446540 Msa0184800:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG - chr1_4:74447021-74447040 Msa0184800:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1_4:74447101-74447120 Msa0184800:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG - chr1_4:74447391-74447410 Msa0184800:CDS 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1_4:74447530-74447549 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG - chr1_4:74444176-74444195 Msa0184800:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG - chr1_4:74444674-74444693 Msa0184800:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG - chr1_4:74444675-74444694 Msa0184800:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG - chr1_4:74444681-74444700 Msa0184800:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG + chr1_4:74444689-74444708 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG - chr1_4:74444686-74444705 Msa0184800:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG + chr1_4:74445764-74445783 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG + chr1_4:74445774-74445793 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG + chr1_4:74445784-74445803 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG + chr1_4:74445785-74445804 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG + chr1_4:74445790-74445809 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1_4:74447102-74447121 Msa0184800:intron 60.0%
CCGGTAGTTGCCCACATTCC+GGG + chr1_4:74447615-74447634 None:intergenic 60.0%
CCCGGAATGTGGGCAACTAC+CGG - chr1_4:74447612-74447631 Msa0184800:CDS 60.0%
GCCGGTAGTTGCCCACATTC+CGG + chr1_4:74447616-74447635 None:intergenic 60.0%
TGCTTCTCGCACGGGCTCGT+CGG + chr1_4:74445570-74445589 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG + chr1_4:74445775-74445794 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG + chr1_4:74445786-74445805 None:intergenic 65.0%
!! TGATGGTGGTGGGGGGTGGT+GGG - chr1_4:74447109-74447128 Msa0184800:intron 65.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1_4:74447336-74447355 Msa0184800:CDS 65.0%
!! GTGATGGTGGTGGGGGGTGG+TGG - chr1_4:74447108-74447127 Msa0184800:intron 70.0%
!! GATGGTGGTGGGGGGTGGTG+GGG - chr1_4:74447110-74447129 Msa0184800:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1_4:74447105-74447124 Msa0184800:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 74442089 74447863 74442089 ID=Msa0184800;Name=Msa0184800
chr1_4 mRNA 74442089 74447863 74442089 ID=Msa0184800-mRNA-1;Parent=Msa0184800;Name=Msa0184800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|1|1|1|1|1|6|289|249
chr1_4 exon 74442089 74442448 74442089 ID=Msa0184800-mRNA-1:exon:25427;Parent=Msa0184800-mRNA-1
chr1_4 exon 74442540 74442686 74442540 ID=Msa0184800-mRNA-1:exon:25426;Parent=Msa0184800-mRNA-1
chr1_4 exon 74444848 74445007 74444848 ID=Msa0184800-mRNA-1:exon:25425;Parent=Msa0184800-mRNA-1
chr1_4 exon 74445108 74445167 74445108 ID=Msa0184800-mRNA-1:exon:25424;Parent=Msa0184800-mRNA-1
chr1_4 exon 74447309 74447430 74447309 ID=Msa0184800-mRNA-1:exon:25423;Parent=Msa0184800-mRNA-1
chr1_4 exon 74447506 74447863 74447506 ID=Msa0184800-mRNA-1:exon:25422;Parent=Msa0184800-mRNA-1
chr1_4 five_prime_UTR 74447696 74447863 74447696 ID=Msa0184800-mRNA-1:five_prime_utr;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74447506 74447695 74447506 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74447309 74447430 74447309 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74445108 74445167 74445108 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74444848 74445007 74444848 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74442540 74442686 74442540 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 CDS 74442378 74442448 74442378 ID=Msa0184800-mRNA-1:cds;Parent=Msa0184800-mRNA-1
chr1_4 three_prime_UTR 74442089 74442377 74442089 ID=Msa0184800-mRNA-1:three_prime_utr;Parent=Msa0184800-mRNA-1
Gene Sequence

>Msa0184800

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0184800

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*