AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133390 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0133390 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133390 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 86 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_3:+64658343 None:intergenic
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_3:-64663306 Msa0133390:CDS
TTAAGAGCAAAGTGAATTTC+TGG 0.200028 1_3:-64663766 Msa0133390:five_prime_UTR
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_3:-64663335 Msa0133390:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_3:+64658291 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_3:-64663502 Msa0133390:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_3:-64663336 Msa0133390:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_3:-64663305 Msa0133390:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_3:-64661106 Msa0133390:intron
GCCGGTAGTTGCCCACATTC+CGG 0.329517 1_3:+64658272 None:intergenic
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_3:+64663582 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_3:+64663303 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_3:+64663258 None:intergenic
CCGGTAGTTGCCCACATTCC+GGG 0.372632 1_3:+64658273 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_3:-64658341 Msa0133390:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_3:+64658358 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_3:+64663689 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_3:-64663726 Msa0133390:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_3:+64663725 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_3:-64658549 Msa0133390:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_3:+64663660 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_3:+64661056 None:intergenic
TAAGAGCAAAGTGAATTTCT+GGG 0.439567 1_3:-64663765 Msa0133390:five_prime_UTR
CGGGTAATGAACTGATAATT+GGG 0.441172 1_3:+64658292 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_3:-64660925 Msa0133390:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_3:+64660877 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_3:-64660918 Msa0133390:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_3:-64658076 Msa0133390:three_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_3:+64658352 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_3:+64660876 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_3:-64663501 Msa0133390:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_3:-64663330 Msa0133390:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_3:-64661061 Msa0133390:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_3:+64658605 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_3:+64658130 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_3:-64663721 Msa0133390:five_prime_UTR
CCCGGAATGTGGGCAACTAC+CGG 0.486756 1_3:-64658273 Msa0133390:three_prime_UTR
AGAGATAGGATTGGAGCAAA+GGG 0.490946 1_3:-64663712 Msa0133390:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_3:-64663363 Msa0133390:CDS
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_3:-64663304 Msa0133390:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_3:+64658355 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_3:+64660913 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_3:+64658330 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_3:-64658291 Msa0133390:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_3:-64661105 Msa0133390:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_3:+64663304 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_3:+64663305 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_3:+64663788 None:intergenic
TAGAGATAGGATTGGAGCAA+AGG 0.526973 1_3:-64663713 Msa0133390:five_prime_UTR
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_3:+64663532 None:intergenic
CAAAGTGAATTTCTGGGGAA+GGG 0.535086 1_3:-64663759 Msa0133390:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_3:-64658284 Msa0133390:three_prime_UTR
CTGAGAACCATTGGTACTAT+CGG 0.543826 1_3:+64660818 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_3:-64660926 Msa0133390:CDS
CAAAATTGATTACACTATGC+CGG 0.554608 1_3:+64658254 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_3:+64658127 None:intergenic
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1_3:-64658494 Msa0133390:intron
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_3:+64660809 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_3:-64663334 Msa0133390:CDS
GCAAAGTGAATTTCTGGGGA+AGG 0.568201 1_3:-64663760 Msa0133390:five_prime_UTR
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_3:-64658570 Msa0133390:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_3:-64663331 Msa0133390:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_3:-64658283 Msa0133390:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_3:+64658325 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1_3:+64660828 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_3:+64661060 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_3:+64661059 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_3:-64663262 Msa0133390:intron
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_3:-64663594 Msa0133390:CDS
CTATAACAATGTAGATGGGA+AGG 0.593214 1_3:-64658633 Msa0133390:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_3:+64663504 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_3:+64660854 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_3:+64658225 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_3:+64660914 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_3:+64663517 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1_3:-64660825 Msa0133390:CDS
CTTAAATAAATGATGTGACA+TGG 0.625387 1_3:+64663784 None:intergenic
AAGAGCAAAGTGAATTTCTG+GGG 0.626095 1_3:-64663764 Msa0133390:five_prime_UTR
AGAACCATTGGTACTATCGG+TGG 0.637633 1_3:+64660821 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_3:+64658126 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1_3:+64660839 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_3:-64663591 Msa0133390:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_3:+64663596 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_3:+64658228 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_3:-64658603 Msa0133390:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_3:-64663355 Msa0133390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTTTTTTTTGAAA+CGG - chr1_3:64661485-64661504 Msa0133390:intron 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG + chr1_3:64663748-64663767 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG + chr1_3:64659373-64659392 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG + chr1_3:64660399-64660418 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG - chr1_3:64661073-64661092 Msa0133390:CDS 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG + chr1_3:64658376-64658395 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG + chr1_3:64658377-64658396 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG - chr1_3:64658379-64658398 Msa0133390:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG + chr1_3:64658385-64658404 None:intergenic 20.0%
!! CAATTTAATCTGAATTACAT+AGG + chr1_3:64658648-64658667 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG - chr1_3:64659284-64659303 Msa0133390:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG + chr1_3:64659569-64659588 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG + chr1_3:64660032-64660051 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG + chr1_3:64660033-64660052 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG - chr1_3:64660263-64660282 Msa0133390:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG + chr1_3:64660351-64660370 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG - chr1_3:64660359-64660378 Msa0133390:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG - chr1_3:64660360-64660379 Msa0133390:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG + chr1_3:64660400-64660419 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG + chr1_3:64660516-64660535 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG - chr1_3:64660603-64660622 Msa0133390:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1_3:64661071-64661090 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1_3:64661074-64661093 Msa0133390:CDS 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1_3:64661136-64661155 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG + chr1_3:64661469-64661488 None:intergenic 20.0%
!! TGGAGAAAAAAATACAATAA+GGG - chr1_3:64661558-64661577 Msa0133390:intron 20.0%
!! ATAACTTGGAAATCTAATAA+TGG + chr1_3:64661931-64661950 None:intergenic 20.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1_3:64662656-64662675 Msa0133390:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1_3:64663200-64663219 Msa0133390:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG - chr1_3:64663201-64663220 Msa0133390:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG + chr1_3:64658057-64658076 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG + chr1_3:64658181-64658200 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG + chr1_3:64658245-64658264 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG - chr1_3:64658244-64658263 Msa0133390:three_prime_UTR 25.0%
! TGAATGGAGATAAAAATGTT+GGG + chr1_3:64658293-64658312 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG + chr1_3:64658294-64658313 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG - chr1_3:64658294-64658313 Msa0133390:three_prime_UTR 25.0%
!! CATTTTTATCTCCATTCATT+GGG - chr1_3:64658295-64658314 Msa0133390:three_prime_UTR 25.0%
!! TCAACTTCTATTATCTCTTT+TGG - chr1_3:64658416-64658435 Msa0133390:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG - chr1_3:64658417-64658436 Msa0133390:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG - chr1_3:64658462-64658481 Msa0133390:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG - chr1_3:64658463-64658482 Msa0133390:intron 25.0%
! CATACTATTTCACTTTGTTA+AGG - chr1_3:64658729-64658748 Msa0133390:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG - chr1_3:64658780-64658799 Msa0133390:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG + chr1_3:64658947-64658966 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG + chr1_3:64659136-64659155 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG - chr1_3:64659155-64659174 Msa0133390:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG + chr1_3:64659321-64659340 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG - chr1_3:64659480-64659499 Msa0133390:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG - chr1_3:64659680-64659699 Msa0133390:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG + chr1_3:64659785-64659804 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG + chr1_3:64659833-64659852 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG - chr1_3:64660081-64660100 Msa0133390:intron 25.0%
! TGGACATGAAATTAATAACT+GGG - chr1_3:64660101-64660120 Msa0133390:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG - chr1_3:64660171-64660190 Msa0133390:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG - chr1_3:64660172-64660191 Msa0133390:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG + chr1_3:64660248-64660267 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG + chr1_3:64660480-64660499 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG - chr1_3:64660531-64660550 Msa0133390:intron 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1_3:64660820-64660839 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1_3:64661075-64661094 Msa0133390:CDS 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1_3:64661207-64661226 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1_3:64661365-64661384 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1_3:64661366-64661385 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1_3:64661403-64661422 Msa0133390:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1_3:64661458-64661477 None:intergenic 25.0%
! GTGGAGAAAAAAATACAATA+AGG - chr1_3:64661557-64661576 Msa0133390:intron 25.0%
! GGAGAAAAAAATACAATAAG+GGG - chr1_3:64661559-64661578 Msa0133390:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG - chr1_3:64661566-64661585 Msa0133390:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1_3:64661857-64661876 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1_3:64661858-64661877 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1_3:64661859-64661878 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1_3:64661860-64661879 Msa0133390:intron 25.0%
! AACAAACTTCAATGATAACT+TGG + chr1_3:64661945-64661964 None:intergenic 25.0%
! AATAGAACATGATAAAAACG+AGG - chr1_3:64662084-64662103 Msa0133390:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG + chr1_3:64662237-64662256 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1_3:64662289-64662308 Msa0133390:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1_3:64662335-64662354 Msa0133390:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG + chr1_3:64662564-64662583 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1_3:64662802-64662821 None:intergenic 25.0%
! GATGAAATAAGCATTTAAGA+AGG - chr1_3:64663104-64663123 Msa0133390:intron 25.0%
TTAAGAGCAAAGTGAATTTC+TGG - chr1_3:64658072-64658091 Msa0133390:three_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG - chr1_3:64658073-64658092 Msa0133390:three_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG + chr1_3:64658116-64658135 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG - chr1_3:64658117-64658136 Msa0133390:three_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG - chr1_3:64658247-64658266 Msa0133390:three_prime_UTR 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG - chr1_3:64658467-64658486 Msa0133390:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG - chr1_3:64658556-64658575 Msa0133390:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG - chr1_3:64658565-64658584 Msa0133390:CDS 30.0%
ACTTTCTGATTTATGTGGTT+CGG - chr1_3:64658785-64658804 Msa0133390:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG + chr1_3:64659101-64659120 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG + chr1_3:64659228-64659247 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG + chr1_3:64659356-64659375 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG - chr1_3:64659386-64659405 Msa0133390:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG + chr1_3:64659390-64659409 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG - chr1_3:64659506-64659525 Msa0133390:intron 30.0%
TGATACACAAACAAGCTATA+GGG + chr1_3:64659605-64659624 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG + chr1_3:64659606-64659625 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG + chr1_3:64659863-64659882 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG - chr1_3:64659862-64659881 Msa0133390:intron 30.0%
GTGGACATGAAATTAATAAC+TGG - chr1_3:64660100-64660119 Msa0133390:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG + chr1_3:64660150-64660169 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG - chr1_3:64660173-64660192 Msa0133390:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG + chr1_3:64660317-64660336 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG + chr1_3:64660341-64660360 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG - chr1_3:64660365-64660384 Msa0133390:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG - chr1_3:64660371-64660390 Msa0133390:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG + chr1_3:64660575-64660594 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG + chr1_3:64660576-64660595 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1_3:64660798-64660817 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1_3:64660912-64660931 Msa0133390:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1_3:64661170-64661189 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1_3:64661208-64661227 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG + chr1_3:64661249-64661268 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG - chr1_3:64661257-64661276 Msa0133390:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1_3:64661364-64661383 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1_3:64661367-64661386 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1_3:64661364-64661383 Msa0133390:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1_3:64661407-64661426 Msa0133390:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG + chr1_3:64661624-64661643 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG + chr1_3:64661625-64661644 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG + chr1_3:64661638-64661657 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG - chr1_3:64661666-64661685 Msa0133390:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1_3:64661890-64661909 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1_3:64661927-64661946 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG - chr1_3:64662003-64662022 Msa0133390:intron 30.0%
ACCTCAATAACCATATCATA+TGG + chr1_3:64662016-64662035 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG + chr1_3:64662234-64662253 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG + chr1_3:64662321-64662340 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1_3:64662452-64662471 Msa0133390:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1_3:64662455-64662474 Msa0133390:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1_3:64662456-64662475 Msa0133390:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1_3:64662515-64662534 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1_3:64662754-64662773 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG + chr1_3:64662845-64662864 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+GGG + chr1_3:64662861-64662880 None:intergenic 30.0%
!!! TTGGTTCTAGGAACTTTTTT+TGG + chr1_3:64662862-64662881 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1_3:64662863-64662882 Msa0133390:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG - chr1_3:64663010-64663029 Msa0133390:intron 30.0%
!! TTATTTCTGCCATAGTGTAA+GGG - chr1_3:64663011-64663030 Msa0133390:intron 30.0%
TAAACTAAACCCTTACACTA+TGG + chr1_3:64663023-64663042 None:intergenic 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1_3:64663082-64663101 Msa0133390:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1_3:64663107-64663126 Msa0133390:intron 30.0%
AACATGATTGGCAATTTGAT+GGG + chr1_3:64663158-64663177 None:intergenic 30.0%
AAACATGATTGGCAATTTGA+TGG + chr1_3:64663159-64663178 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1_3:64663170-64663189 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG + chr1_3:64663329-64663348 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1_3:64663362-64663381 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1_3:64663365-64663384 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG + chr1_3:64663511-64663530 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG + chr1_3:64663587-64663606 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG + chr1_3:64663725-64663744 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG - chr1_3:64663762-64663781 Msa0133390:five_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG + chr1_3:64658053-64658072 None:intergenic 35.0%
AAGAGCAAAGTGAATTTCTG+GGG - chr1_3:64658074-64658093 Msa0133390:three_prime_UTR 35.0%
GCCATTAGATTCTTAGAGAT+AGG - chr1_3:64658112-64658131 Msa0133390:three_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG + chr1_3:64658152-64658171 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG + chr1_3:64658337-64658356 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG - chr1_3:64658336-64658355 Msa0133390:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG - chr1_3:64658337-64658356 Msa0133390:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG - chr1_3:64658793-64658812 Msa0133390:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG - chr1_3:64659104-64659123 Msa0133390:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG - chr1_3:64659190-64659209 Msa0133390:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG - chr1_3:64659444-64659463 Msa0133390:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG - chr1_3:64659523-64659542 Msa0133390:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG + chr1_3:64659542-64659561 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG + chr1_3:64659744-64659763 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG - chr1_3:64659743-64659762 Msa0133390:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG + chr1_3:64659772-64659791 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG + chr1_3:64659894-64659913 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG + chr1_3:64660239-64660258 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG + chr1_3:64660301-64660320 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG + chr1_3:64660302-64660321 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG - chr1_3:64660437-64660456 Msa0133390:intron 35.0%
TGAAAGTTATACCGACATTC+AGG - chr1_3:64660466-64660485 Msa0133390:intron 35.0%
GAAAGTTATACCGACATTCA+GGG - chr1_3:64660467-64660486 Msa0133390:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG - chr1_3:64660609-64660628 Msa0133390:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG - chr1_3:64660659-64660678 Msa0133390:intron 35.0%
!!! TTACTTTTTTGATAGCCCCT+CGG - chr1_3:64660701-64660720 Msa0133390:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG + chr1_3:64660852-64660871 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1_3:64660913-64660932 Msa0133390:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1_3:64660964-64660983 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1_3:64661244-64661263 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG + chr1_3:64661339-64661358 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1_3:64661363-64661382 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1_3:64661450-64661469 Msa0133390:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1_3:64661454-64661473 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG + chr1_3:64661623-64661642 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG + chr1_3:64661639-64661658 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG + chr1_3:64661655-64661674 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG + chr1_3:64661656-64661675 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG + chr1_3:64661756-64661775 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG - chr1_3:64662012-64662031 Msa0133390:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1_3:64662157-64662176 Msa0133390:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1_3:64662162-64662181 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG + chr1_3:64662253-64662272 None:intergenic 35.0%
AGAACGTTACAATAAACGAG+TGG - chr1_3:64662370-64662389 Msa0133390:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1_3:64662502-64662521 Msa0133390:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG + chr1_3:64662593-64662612 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG - chr1_3:64662592-64662611 Msa0133390:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1_3:64662777-64662796 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1_3:64662832-64662851 None:intergenic 35.0%
!!! GGTTCTAGGAACTTTTTTTG+GGG + chr1_3:64662860-64662879 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1_3:64662957-64662976 Msa0133390:intron 35.0%
CTATAACAATGTAGATGGGA+AGG - chr1_3:64663205-64663224 Msa0133390:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1_3:64663268-64663287 Msa0133390:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG + chr1_3:64663324-64663343 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG + chr1_3:64663325-64663344 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG + chr1_3:64663326-64663345 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1_3:64663412-64663431 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1_3:64663498-64663517 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1_3:64663497-64663516 Msa0133390:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG + chr1_3:64663516-64663535 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG + chr1_3:64663549-64663568 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG - chr1_3:64663547-64663566 Msa0133390:CDS 35.0%
TTTACACAACTCAAGTGACT+CGG + chr1_3:64663616-64663635 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG + chr1_3:64663714-64663733 None:intergenic 35.0%
! CAAAGTGAATTTCTGGGGAA+GGG - chr1_3:64658079-64658098 Msa0133390:three_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+AGG - chr1_3:64658125-64658144 Msa0133390:three_prime_UTR 40.0%
AGAGATAGGATTGGAGCAAA+GGG - chr1_3:64658126-64658145 Msa0133390:three_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG + chr1_3:64658259-64658278 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG + chr1_3:64658324-64658343 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG - chr1_3:64658503-64658522 Msa0133390:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG - chr1_3:64658803-64658822 Msa0133390:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG + chr1_3:64659005-64659024 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG + chr1_3:64659006-64659025 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG - chr1_3:64659432-64659451 Msa0133390:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG + chr1_3:64659733-64659752 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG + chr1_3:64659736-64659755 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG - chr1_3:64659883-64659902 Msa0133390:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG + chr1_3:64659929-64659948 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG + chr1_3:64659939-64659958 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG - chr1_3:64659937-64659956 Msa0133390:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG + chr1_3:64659942-64659961 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG - chr1_3:64659996-64660015 Msa0133390:intron 40.0%
TATCTGCATCCAAGAACACA+TGG + chr1_3:64660008-64660027 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG + chr1_3:64660459-64660478 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG - chr1_3:64660559-64660578 Msa0133390:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG - chr1_3:64660653-64660672 Msa0133390:intron 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1_3:64660785-64660804 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1_3:64660877-64660896 Msa0133390:CDS 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1_3:64660884-64660903 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1_3:64660965-64660984 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG + chr1_3:64661023-64661042 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1_3:64661057-64661076 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1_3:64661058-64661077 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1_3:64661270-64661289 Msa0133390:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1_3:64661327-64661346 Msa0133390:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1_3:64661328-64661347 Msa0133390:intron 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1_3:64661411-64661430 Msa0133390:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG + chr1_3:64661422-64661441 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1_3:64662125-64662144 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1_3:64662141-64662160 None:intergenic 40.0%
TTATTCTACCATCCTCCATC+TGG + chr1_3:64662486-64662505 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1_3:64662610-64662629 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1_3:64662616-64662635 Msa0133390:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1_3:64662717-64662736 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1_3:64662718-64662737 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1_3:64662778-64662797 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1_3:64662903-64662922 Msa0133390:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG + chr1_3:64662991-64663010 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG - chr1_3:64663045-64663064 Msa0133390:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1_3:64663323-64663342 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG - chr1_3:64663427-64663446 Msa0133390:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG + chr1_3:64663431-64663450 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG + chr1_3:64663550-64663569 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG + chr1_3:64663715-64663734 None:intergenic 40.0%
! GCAAAGTGAATTTCTGGGGA+AGG - chr1_3:64658078-64658097 Msa0133390:three_prime_UTR 45.0%
AAAGACGGTGACCCAATGAA+TGG + chr1_3:64658309-64658328 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG - chr1_3:64658322-64658341 Msa0133390:exon 45.0%
GATAGAAAGGGTCGGTGTAA+AGG - chr1_3:64658475-64658494 Msa0133390:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG - chr1_3:64658502-64658521 Msa0133390:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG - chr1_3:64658504-64658523 Msa0133390:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG + chr1_3:64658536-64658555 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG - chr1_3:64658533-64658552 Msa0133390:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG + chr1_3:64658537-64658556 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG - chr1_3:64658534-64658553 Msa0133390:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG + chr1_3:64658538-64658557 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG - chr1_3:64659073-64659092 Msa0133390:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG + chr1_3:64659077-64659096 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG - chr1_3:64659209-64659228 Msa0133390:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG + chr1_3:64659754-64659773 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG + chr1_3:64659755-64659774 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG + chr1_3:64659928-64659947 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG + chr1_3:64659930-64659949 None:intergenic 45.0%
CTGCATTCAAAGAAACCGAG+GGG + chr1_3:64660719-64660738 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG + chr1_3:64660720-64660739 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG + chr1_3:64660721-64660740 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG - chr1_3:64660732-64660751 Msa0133390:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1_3:64660733-64660752 Msa0133390:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1_3:64660781-64660800 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1_3:64660782-64660801 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG - chr1_3:64660834-64660853 Msa0133390:CDS 45.0%
AAGAATCAACCGAGTGGCAT+TGG + chr1_3:64660846-64660865 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1_3:64660927-64660946 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1_3:64660987-64661006 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG + chr1_3:64661013-64661032 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG - chr1_3:64661013-64661032 Msa0133390:intron 45.0%
AGAACCATTGGTACTATCGG+TGG + chr1_3:64661020-64661039 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1_3:64661032-64661051 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG + chr1_3:64661532-64661551 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG + chr1_3:64661533-64661552 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG - chr1_3:64661534-64661553 Msa0133390:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG - chr1_3:64661535-64661554 Msa0133390:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG + chr1_3:64661635-64661654 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG + chr1_3:64661705-64661724 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG + chr1_3:64661753-64661772 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1_3:64661788-64661807 Msa0133390:intron 45.0%
TGCTATATGACTGACAGACC+AGG + chr1_3:64661809-64661828 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG - chr1_3:64662599-64662618 Msa0133390:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1_3:64662606-64662625 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1_3:64662604-64662623 Msa0133390:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1_3:64662705-64662724 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1_3:64662709-64662728 Msa0133390:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1_3:64662874-64662893 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1_3:64662874-64662893 Msa0133390:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1_3:64662908-64662927 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG + chr1_3:64662983-64663002 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1_3:64663051-64663070 Msa0133390:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1_3:64663052-64663071 Msa0133390:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1_3:64663236-64663255 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1_3:64663235-64663254 Msa0133390:intron 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1_3:64663489-64663508 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG - chr1_3:64663554-64663573 Msa0133390:CDS 45.0%
CAGTTCATTACCCGGAATGT+GGG - chr1_3:64663555-64663574 Msa0133390:CDS 45.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1_3:64662043-64662062 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1_3:64662426-64662445 Msa0133390:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1_3:64662427-64662446 Msa0133390:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG - chr1_3:64658317-64658336 Msa0133390:exon 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG - chr1_3:64658507-64658526 Msa0133390:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG - chr1_3:64658508-64658527 Msa0133390:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG - chr1_3:64658532-64658551 Msa0133390:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG - chr1_3:64658576-64658595 Msa0133390:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG + chr1_3:64658583-64658602 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG + chr1_3:64659088-64659107 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG - chr1_3:64659109-64659128 Msa0133390:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG + chr1_3:64659125-64659144 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG + chr1_3:64659406-64659425 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG + chr1_3:64659926-64659945 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG + chr1_3:64659927-64659946 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG + chr1_3:64660138-64660157 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG - chr1_3:64660717-64660736 Msa0133390:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1_3:64660777-64660796 Msa0133390:intron 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1_3:64660920-64660939 Msa0133390:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1_3:64660928-64660947 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG - chr1_3:64661538-64661557 Msa0133390:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG - chr1_3:64661585-64661604 Msa0133390:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG + chr1_3:64661595-64661614 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG + chr1_3:64661606-64661625 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG + chr1_3:64661704-64661723 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG + chr1_3:64661706-64661725 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1_3:64662468-64662487 Msa0133390:intron 50.0%
GTTGCCTATGCTGCTCCATT+TGG + chr1_3:64662881-64662900 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG - chr1_3:64663048-64663067 Msa0133390:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1_3:64663053-64663072 Msa0133390:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1_3:64663486-64663505 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG + chr1_3:64663613-64663632 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG + chr1_3:64663711-64663730 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG - chr1_3:64658483-64658502 Msa0133390:intron 55.0%
CAGACTCCTTGTCAAGGAGC+CGG - chr1_3:64659079-64659098 Msa0133390:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG - chr1_3:64660122-64660141 Msa0133390:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG + chr1_3:64660637-64660656 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG + chr1_3:64660642-64660661 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG + chr1_3:64661002-64661021 None:intergenic 55.0%
CCCCTGCGTCAATACCAAAG+AGG - chr1_3:64661701-64661720 Msa0133390:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG + chr1_3:64661750-64661769 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1_3:64662471-64662490 Msa0133390:intron 55.0%
AGGGTTGACCAGATGGAGGA+TGG - chr1_3:64662475-64662494 Msa0133390:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG - chr1_3:64662974-64662993 Msa0133390:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1_3:64663054-64663073 Msa0133390:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG - chr1_3:64663344-64663363 Msa0133390:CDS 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1_3:64663483-64663502 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG - chr1_3:64660130-64660149 Msa0133390:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG - chr1_3:64660628-64660647 Msa0133390:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG - chr1_3:64660629-64660648 Msa0133390:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG - chr1_3:64660635-64660654 Msa0133390:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG + chr1_3:64660643-64660662 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG - chr1_3:64660640-64660659 Msa0133390:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG + chr1_3:64661718-64661737 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG + chr1_3:64661728-64661747 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG + chr1_3:64661738-64661757 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG + chr1_3:64661739-64661758 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG + chr1_3:64661744-64661763 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1_3:64663055-64663074 Msa0133390:intron 60.0%
CCGGTAGTTGCCCACATTCC+GGG + chr1_3:64663568-64663587 None:intergenic 60.0%
CCCGGAATGTGGGCAACTAC+CGG - chr1_3:64663565-64663584 Msa0133390:CDS 60.0%
GCCGGTAGTTGCCCACATTC+CGG + chr1_3:64663569-64663588 None:intergenic 60.0%
TGCTTCTCGCACGGGCTCGT+CGG + chr1_3:64661524-64661543 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG + chr1_3:64661729-64661748 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG + chr1_3:64661740-64661759 None:intergenic 65.0%
!! TGATGGTGGTGGGGGGTGGT+GGG - chr1_3:64663062-64663081 Msa0133390:intron 65.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1_3:64663289-64663308 Msa0133390:CDS 65.0%
!! GTGATGGTGGTGGGGGGTGG+TGG - chr1_3:64663061-64663080 Msa0133390:intron 70.0%
!! GATGGTGGTGGGGGGTGGTG+GGG - chr1_3:64663063-64663082 Msa0133390:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1_3:64663058-64663077 Msa0133390:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64658043 64663817 64658043 ID=Msa0133390;Name=Msa0133390
chr1_3 mRNA 64658043 64663817 64658043 ID=Msa0133390-mRNA-1;Parent=Msa0133390;Name=Msa0133390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|1|1|1|1|1|6|290|249
chr1_3 exon 64658043 64658403 64658043 ID=Msa0133390-mRNA-1:exon:21803;Parent=Msa0133390-mRNA-1
chr1_3 exon 64658495 64658641 64658495 ID=Msa0133390-mRNA-1:exon:21802;Parent=Msa0133390-mRNA-1
chr1_3 exon 64660802 64660961 64660802 ID=Msa0133390-mRNA-1:exon:21801;Parent=Msa0133390-mRNA-1
chr1_3 exon 64661062 64661121 64661062 ID=Msa0133390-mRNA-1:exon:21800;Parent=Msa0133390-mRNA-1
chr1_3 exon 64663263 64663384 64663263 ID=Msa0133390-mRNA-1:exon:21799;Parent=Msa0133390-mRNA-1
chr1_3 exon 64663460 64663817 64663460 ID=Msa0133390-mRNA-1:exon:21798;Parent=Msa0133390-mRNA-1
chr1_3 five_prime_UTR 64663650 64663817 64663650 ID=Msa0133390-mRNA-1:five_prime_utr;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64663460 64663649 64663460 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64663263 64663384 64663263 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64661062 64661121 64661062 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64660802 64660961 64660802 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64658495 64658641 64658495 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 CDS 64658333 64658403 64658333 ID=Msa0133390-mRNA-1:cds;Parent=Msa0133390-mRNA-1
chr1_3 three_prime_UTR 64658043 64658332 64658043 ID=Msa0133390-mRNA-1:three_prime_utr;Parent=Msa0133390-mRNA-1
Gene Sequence

>Msa0133390

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0133390

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*