AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0076100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076100 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0076100 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0076100 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 86 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_2:+51922873 None:intergenic
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_2:-51927838 Msa0076100:CDS
TTAAGAGCAAAGTGAATTTC+TGG 0.200028 1_2:-51928298 Msa0076100:five_prime_UTR
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_2:-51927867 Msa0076100:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_2:+51922821 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_2:-51928034 Msa0076100:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_2:-51927868 Msa0076100:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_2:-51927837 Msa0076100:CDS
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_2:-51925638 Msa0076100:intron
GCCGGTAGTTGCCCACATTC+CGG 0.329517 1_2:+51922802 None:intergenic
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_2:+51928114 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_2:+51927835 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_2:+51927790 None:intergenic
CCGGTAGTTGCCCACATTCC+GGG 0.372632 1_2:+51922803 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_2:-51922871 Msa0076100:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_2:+51922888 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_2:+51928221 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_2:-51928258 Msa0076100:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_2:+51928257 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_2:-51923079 Msa0076100:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_2:+51928192 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_2:+51925588 None:intergenic
TAAGAGCAAAGTGAATTTCT+GGG 0.439567 1_2:-51928297 Msa0076100:five_prime_UTR
CGGGTAATGAACTGATAATT+GGG 0.441172 1_2:+51922822 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_2:-51925457 Msa0076100:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_2:+51925409 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_2:-51925450 Msa0076100:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_2:-51922607 Msa0076100:three_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_2:+51922882 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_2:+51925408 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_2:-51928033 Msa0076100:CDS
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_2:-51927862 Msa0076100:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_2:-51925593 Msa0076100:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_2:+51923135 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_2:+51922661 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_2:-51928253 Msa0076100:five_prime_UTR
CCCGGAATGTGGGCAACTAC+CGG 0.486756 1_2:-51922803 Msa0076100:three_prime_UTR
AGAGATAGGATTGGAGCAAA+GGG 0.490946 1_2:-51928244 Msa0076100:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_2:-51927895 Msa0076100:CDS
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_2:-51927836 Msa0076100:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_2:+51922885 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_2:+51925445 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_2:+51922860 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_2:-51922821 Msa0076100:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_2:-51925637 Msa0076100:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_2:+51927836 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_2:+51927837 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_2:+51928320 None:intergenic
TAGAGATAGGATTGGAGCAA+AGG 0.526973 1_2:-51928245 Msa0076100:five_prime_UTR
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_2:+51928064 None:intergenic
CAAAGTGAATTTCTGGGGAA+GGG 0.535086 1_2:-51928291 Msa0076100:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_2:-51922814 Msa0076100:three_prime_UTR
CTGAGAACCATTGGTACTAT+CGG 0.543826 1_2:+51925350 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_2:-51925458 Msa0076100:CDS
CAAAATTGATTACACTATGC+CGG 0.554608 1_2:+51922784 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_2:+51922658 None:intergenic
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1_2:-51923024 Msa0076100:intron
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_2:+51925341 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_2:-51927866 Msa0076100:CDS
GCAAAGTGAATTTCTGGGGA+AGG 0.568201 1_2:-51928292 Msa0076100:five_prime_UTR
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_2:-51923100 Msa0076100:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_2:-51927863 Msa0076100:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_2:-51922813 Msa0076100:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_2:+51922855 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1_2:+51925360 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_2:+51925592 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_2:+51925591 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_2:-51927794 Msa0076100:intron
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_2:-51928126 Msa0076100:CDS
CTATAACAATGTAGATGGGA+AGG 0.593214 1_2:-51923163 Msa0076100:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_2:+51928036 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_2:+51925386 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_2:+51922755 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_2:+51925446 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_2:+51928049 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1_2:-51925357 Msa0076100:CDS
CTTAAATAAATGATGTGACA+TGG 0.625387 1_2:+51928316 None:intergenic
AAGAGCAAAGTGAATTTCTG+GGG 0.626095 1_2:-51928296 Msa0076100:five_prime_UTR
AGAACCATTGGTACTATCGG+TGG 0.637633 1_2:+51925353 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_2:+51922657 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1_2:+51925371 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_2:-51928123 Msa0076100:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_2:+51928128 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_2:+51922758 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_2:-51923133 Msa0076100:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_2:-51927887 Msa0076100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTTTTTTTTTTTGAAA+CGG - chr1_2:51926017-51926036 Msa0076100:intron 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG + chr1_2:51928280-51928299 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG + chr1_2:51923904-51923923 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG + chr1_2:51924930-51924949 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG - chr1_2:51925604-51925623 Msa0076100:CDS 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG + chr1_2:51922907-51922926 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG + chr1_2:51922908-51922927 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG - chr1_2:51922910-51922929 Msa0076100:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG + chr1_2:51922916-51922935 None:intergenic 20.0%
!! CAAATTAATCTGAATTACAT+AGG + chr1_2:51923179-51923198 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG - chr1_2:51923815-51923834 Msa0076100:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG + chr1_2:51924100-51924119 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG + chr1_2:51924563-51924582 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG + chr1_2:51924564-51924583 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG - chr1_2:51924794-51924813 Msa0076100:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG + chr1_2:51924882-51924901 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG - chr1_2:51924890-51924909 Msa0076100:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG - chr1_2:51924891-51924910 Msa0076100:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG + chr1_2:51924931-51924950 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG + chr1_2:51925047-51925066 None:intergenic 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG - chr1_2:51925134-51925153 Msa0076100:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1_2:51925602-51925621 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1_2:51925605-51925624 Msa0076100:CDS 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1_2:51925667-51925686 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG + chr1_2:51926000-51926019 None:intergenic 20.0%
!! TGGAGAAAAAAATACAATAA+GGG - chr1_2:51926090-51926109 Msa0076100:intron 20.0%
!! ATAACTTGGAAATCTAATAA+TGG + chr1_2:51926463-51926482 None:intergenic 20.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1_2:51927188-51927207 Msa0076100:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1_2:51927733-51927752 Msa0076100:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG - chr1_2:51927734-51927753 Msa0076100:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG + chr1_2:51922588-51922607 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG + chr1_2:51922712-51922731 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG + chr1_2:51922776-51922795 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG - chr1_2:51922775-51922794 Msa0076100:three_prime_UTR 25.0%
! TGAATGGAGATAAAAATGTT+GGG + chr1_2:51922824-51922843 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG + chr1_2:51922825-51922844 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG - chr1_2:51922825-51922844 Msa0076100:three_prime_UTR 25.0%
!! CATTTTTATCTCCATTCATT+GGG - chr1_2:51922826-51922845 Msa0076100:three_prime_UTR 25.0%
!! TCAACTTCTATTATCTCTTT+TGG - chr1_2:51922947-51922966 Msa0076100:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG - chr1_2:51922948-51922967 Msa0076100:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG - chr1_2:51922993-51923012 Msa0076100:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG - chr1_2:51922994-51923013 Msa0076100:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG - chr1_2:51923311-51923330 Msa0076100:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG + chr1_2:51923478-51923497 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG + chr1_2:51923667-51923686 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG - chr1_2:51923686-51923705 Msa0076100:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG + chr1_2:51923852-51923871 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG - chr1_2:51924011-51924030 Msa0076100:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG - chr1_2:51924211-51924230 Msa0076100:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG + chr1_2:51924316-51924335 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG + chr1_2:51924364-51924383 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG - chr1_2:51924612-51924631 Msa0076100:intron 25.0%
! TGGACATGAAATTAATAACT+GGG - chr1_2:51924632-51924651 Msa0076100:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG - chr1_2:51924702-51924721 Msa0076100:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG - chr1_2:51924703-51924722 Msa0076100:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG + chr1_2:51924779-51924798 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG + chr1_2:51925011-51925030 None:intergenic 25.0%
! TGAGATTAACTTTAGATAGT+TGG - chr1_2:51925062-51925081 Msa0076100:intron 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1_2:51925351-51925370 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1_2:51925606-51925625 Msa0076100:CDS 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1_2:51925738-51925757 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1_2:51925896-51925915 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1_2:51925897-51925916 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1_2:51925934-51925953 Msa0076100:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1_2:51925989-51926008 None:intergenic 25.0%
! GTGGAGAAAAAAATACAATA+AGG - chr1_2:51926089-51926108 Msa0076100:intron 25.0%
! GGAGAAAAAAATACAATAAG+GGG - chr1_2:51926091-51926110 Msa0076100:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG - chr1_2:51926098-51926117 Msa0076100:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1_2:51926389-51926408 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1_2:51926390-51926409 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1_2:51926391-51926410 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1_2:51926392-51926411 Msa0076100:intron 25.0%
! AACAAACTTCAATGATAACT+TGG + chr1_2:51926477-51926496 None:intergenic 25.0%
! AATAGAACATGATAAAAACG+AGG - chr1_2:51926616-51926635 Msa0076100:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG + chr1_2:51926769-51926788 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1_2:51926821-51926840 Msa0076100:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1_2:51926867-51926886 Msa0076100:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG + chr1_2:51927096-51927115 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1_2:51927334-51927353 None:intergenic 25.0%
! GATGAAATAAGCATTTAAGA+AGG - chr1_2:51927637-51927656 Msa0076100:intron 25.0%
TTAAGAGCAAAGTGAATTTC+TGG - chr1_2:51922603-51922622 Msa0076100:three_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG - chr1_2:51922604-51922623 Msa0076100:three_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG + chr1_2:51922647-51922666 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG - chr1_2:51922648-51922667 Msa0076100:three_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG - chr1_2:51922778-51922797 Msa0076100:three_prime_UTR 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG - chr1_2:51922998-51923017 Msa0076100:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG - chr1_2:51923087-51923106 Msa0076100:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG - chr1_2:51923096-51923115 Msa0076100:CDS 30.0%
CATACTATTTCACTTTGTCA+AGG - chr1_2:51923260-51923279 Msa0076100:intron 30.0%
ACTTTCTGATTTATGTGGTT+CGG - chr1_2:51923316-51923335 Msa0076100:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG + chr1_2:51923632-51923651 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG + chr1_2:51923759-51923778 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG + chr1_2:51923887-51923906 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG - chr1_2:51923917-51923936 Msa0076100:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG + chr1_2:51923921-51923940 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG - chr1_2:51924037-51924056 Msa0076100:intron 30.0%
TGATACACAAACAAGCTATA+GGG + chr1_2:51924136-51924155 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG + chr1_2:51924137-51924156 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG + chr1_2:51924394-51924413 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG - chr1_2:51924393-51924412 Msa0076100:intron 30.0%
GTGGACATGAAATTAATAAC+TGG - chr1_2:51924631-51924650 Msa0076100:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG + chr1_2:51924681-51924700 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG - chr1_2:51924704-51924723 Msa0076100:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG + chr1_2:51924848-51924867 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG + chr1_2:51924872-51924891 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG - chr1_2:51924896-51924915 Msa0076100:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG - chr1_2:51924902-51924921 Msa0076100:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG + chr1_2:51925106-51925125 None:intergenic 30.0%
ATGTATCTAATAAGCCTCAA+AGG + chr1_2:51925107-51925126 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1_2:51925329-51925348 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1_2:51925443-51925462 Msa0076100:CDS 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1_2:51925701-51925720 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1_2:51925739-51925758 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG + chr1_2:51925780-51925799 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG - chr1_2:51925788-51925807 Msa0076100:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1_2:51925895-51925914 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1_2:51925898-51925917 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1_2:51925895-51925914 Msa0076100:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1_2:51925938-51925957 Msa0076100:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG + chr1_2:51926156-51926175 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG + chr1_2:51926157-51926176 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG + chr1_2:51926170-51926189 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG - chr1_2:51926198-51926217 Msa0076100:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1_2:51926422-51926441 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1_2:51926459-51926478 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG - chr1_2:51926535-51926554 Msa0076100:intron 30.0%
ACCTCAATAACCATATCATA+TGG + chr1_2:51926548-51926567 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG + chr1_2:51926766-51926785 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG + chr1_2:51926853-51926872 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1_2:51926984-51927003 Msa0076100:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1_2:51926987-51927006 Msa0076100:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1_2:51926988-51927007 Msa0076100:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1_2:51927047-51927066 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1_2:51927286-51927305 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG + chr1_2:51927377-51927396 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG + chr1_2:51927392-51927411 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG + chr1_2:51927393-51927412 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG + chr1_2:51927394-51927413 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1_2:51927396-51927415 Msa0076100:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG - chr1_2:51927543-51927562 Msa0076100:intron 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1_2:51927615-51927634 Msa0076100:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1_2:51927640-51927659 Msa0076100:intron 30.0%
AACATGATTGGCAATTTGAT+GGG + chr1_2:51927691-51927710 None:intergenic 30.0%
AAACATGATTGGCAATTTGA+TGG + chr1_2:51927692-51927711 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1_2:51927703-51927722 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG + chr1_2:51927862-51927881 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1_2:51927895-51927914 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1_2:51927898-51927917 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG + chr1_2:51928044-51928063 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG + chr1_2:51928120-51928139 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG + chr1_2:51928257-51928276 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG - chr1_2:51928294-51928313 Msa0076100:five_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG + chr1_2:51922584-51922603 None:intergenic 35.0%
AAGAGCAAAGTGAATTTCTG+GGG - chr1_2:51922605-51922624 Msa0076100:three_prime_UTR 35.0%
GCCATTAGATTCTTAGAGAT+AGG - chr1_2:51922643-51922662 Msa0076100:three_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG + chr1_2:51922683-51922702 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG + chr1_2:51922868-51922887 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG - chr1_2:51922867-51922886 Msa0076100:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG - chr1_2:51922868-51922887 Msa0076100:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG - chr1_2:51923324-51923343 Msa0076100:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG - chr1_2:51923635-51923654 Msa0076100:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG - chr1_2:51923721-51923740 Msa0076100:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG - chr1_2:51923975-51923994 Msa0076100:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG - chr1_2:51924054-51924073 Msa0076100:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG + chr1_2:51924073-51924092 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG + chr1_2:51924275-51924294 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG - chr1_2:51924274-51924293 Msa0076100:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG + chr1_2:51924303-51924322 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG + chr1_2:51924425-51924444 None:intergenic 35.0%
ATTACGAATGAAGGAATCTC+AGG + chr1_2:51924770-51924789 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG + chr1_2:51924832-51924851 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG + chr1_2:51924833-51924852 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG - chr1_2:51924968-51924987 Msa0076100:intron 35.0%
TGAAAGTTATACCGACATTC+AGG - chr1_2:51924997-51925016 Msa0076100:intron 35.0%
GAAAGTTATACCGACATTCA+GGG - chr1_2:51924998-51925017 Msa0076100:intron 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG - chr1_2:51925140-51925159 Msa0076100:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG - chr1_2:51925190-51925209 Msa0076100:intron 35.0%
!!! TTACTTTTTTGATAGCCCCT+CGG - chr1_2:51925232-51925251 Msa0076100:intron 35.0%
AAATCAAAGAATCAACCGAG+TGG + chr1_2:51925383-51925402 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1_2:51925444-51925463 Msa0076100:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1_2:51925495-51925514 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1_2:51925775-51925794 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG + chr1_2:51925870-51925889 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1_2:51925894-51925913 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1_2:51925981-51926000 Msa0076100:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1_2:51925985-51926004 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG + chr1_2:51926155-51926174 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG + chr1_2:51926171-51926190 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG + chr1_2:51926187-51926206 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG + chr1_2:51926188-51926207 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG + chr1_2:51926288-51926307 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG - chr1_2:51926544-51926563 Msa0076100:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1_2:51926689-51926708 Msa0076100:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1_2:51926694-51926713 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG + chr1_2:51926785-51926804 None:intergenic 35.0%
AGAACGTTACAATAAACGAG+TGG - chr1_2:51926902-51926921 Msa0076100:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1_2:51927034-51927053 Msa0076100:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG + chr1_2:51927125-51927144 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG - chr1_2:51927124-51927143 Msa0076100:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1_2:51927309-51927328 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1_2:51927364-51927383 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1_2:51927490-51927509 Msa0076100:intron 35.0%
CTATAACAATGTAGATGGGA+AGG - chr1_2:51927738-51927757 Msa0076100:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1_2:51927801-51927820 Msa0076100:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG + chr1_2:51927857-51927876 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG + chr1_2:51927858-51927877 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG + chr1_2:51927859-51927878 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1_2:51927945-51927964 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1_2:51928031-51928050 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1_2:51928030-51928049 Msa0076100:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG + chr1_2:51928049-51928068 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG + chr1_2:51928082-51928101 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG - chr1_2:51928080-51928099 Msa0076100:CDS 35.0%
TTTACACAACTCAAGTGACT+CGG + chr1_2:51928149-51928168 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG + chr1_2:51928246-51928265 None:intergenic 35.0%
! CAAAGTGAATTTCTGGGGAA+GGG - chr1_2:51922610-51922629 Msa0076100:three_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+AGG - chr1_2:51922656-51922675 Msa0076100:three_prime_UTR 40.0%
AGAGATAGGATTGGAGCAAA+GGG - chr1_2:51922657-51922676 Msa0076100:three_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG + chr1_2:51922790-51922809 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG + chr1_2:51922855-51922874 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG - chr1_2:51923034-51923053 Msa0076100:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG - chr1_2:51923334-51923353 Msa0076100:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG + chr1_2:51923536-51923555 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG + chr1_2:51923537-51923556 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG - chr1_2:51923963-51923982 Msa0076100:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG + chr1_2:51924264-51924283 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG + chr1_2:51924267-51924286 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG - chr1_2:51924414-51924433 Msa0076100:intron 40.0%
ATCTTAGTGGCGGTTAAGAT+GGG + chr1_2:51924460-51924479 None:intergenic 40.0%
CGATCAATTCATCTTAGTGG+CGG + chr1_2:51924470-51924489 None:intergenic 40.0%
CGCCACTAAGATGAATTGAT+CGG - chr1_2:51924468-51924487 Msa0076100:intron 40.0%
CTCCGATCAATTCATCTTAG+TGG + chr1_2:51924473-51924492 None:intergenic 40.0%
AGTGTGATACCATGTGTTCT+TGG - chr1_2:51924527-51924546 Msa0076100:intron 40.0%
TATCTGCATCCAAGAACACA+TGG + chr1_2:51924539-51924558 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG + chr1_2:51924990-51925009 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG - chr1_2:51925090-51925109 Msa0076100:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG - chr1_2:51925184-51925203 Msa0076100:intron 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1_2:51925316-51925335 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1_2:51925408-51925427 Msa0076100:CDS 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1_2:51925415-51925434 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1_2:51925496-51925515 None:intergenic 40.0%
CTGAGAACCATTGGTACTAT+CGG + chr1_2:51925554-51925573 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1_2:51925588-51925607 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1_2:51925589-51925608 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1_2:51925801-51925820 Msa0076100:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1_2:51925858-51925877 Msa0076100:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1_2:51925859-51925878 Msa0076100:intron 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1_2:51925942-51925961 Msa0076100:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG + chr1_2:51925953-51925972 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1_2:51926657-51926676 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1_2:51926673-51926692 None:intergenic 40.0%
TTATTCTACCATCCTCCATC+TGG + chr1_2:51927018-51927037 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1_2:51927142-51927161 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1_2:51927148-51927167 Msa0076100:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1_2:51927249-51927268 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1_2:51927250-51927269 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1_2:51927310-51927329 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1_2:51927436-51927455 Msa0076100:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG + chr1_2:51927524-51927543 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG - chr1_2:51927578-51927597 Msa0076100:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1_2:51927856-51927875 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG - chr1_2:51927960-51927979 Msa0076100:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG + chr1_2:51927964-51927983 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG + chr1_2:51928083-51928102 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG + chr1_2:51928247-51928266 None:intergenic 40.0%
! GCAAAGTGAATTTCTGGGGA+AGG - chr1_2:51922609-51922628 Msa0076100:three_prime_UTR 45.0%
AAAGACGGTGACCCAATGAA+TGG + chr1_2:51922840-51922859 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG - chr1_2:51922853-51922872 Msa0076100:exon 45.0%
GATAGAAAGGGTCGGTGTAA+AGG - chr1_2:51923006-51923025 Msa0076100:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG - chr1_2:51923033-51923052 Msa0076100:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG - chr1_2:51923035-51923054 Msa0076100:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG + chr1_2:51923067-51923086 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG - chr1_2:51923064-51923083 Msa0076100:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG + chr1_2:51923068-51923087 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG - chr1_2:51923065-51923084 Msa0076100:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG + chr1_2:51923069-51923088 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG - chr1_2:51923604-51923623 Msa0076100:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG + chr1_2:51923608-51923627 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG - chr1_2:51923740-51923759 Msa0076100:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG + chr1_2:51924285-51924304 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG + chr1_2:51924286-51924305 None:intergenic 45.0%
TCTTAGTGGCGGTTAAGATG+GGG + chr1_2:51924459-51924478 None:intergenic 45.0%
CATCTTAGTGGCGGTTAAGA+TGG + chr1_2:51924461-51924480 None:intergenic 45.0%
CTGCATTCAAAGAAACCGAG+GGG + chr1_2:51925250-51925269 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG + chr1_2:51925251-51925270 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG + chr1_2:51925252-51925271 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG - chr1_2:51925263-51925282 Msa0076100:intron 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1_2:51925264-51925283 Msa0076100:intron 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1_2:51925312-51925331 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1_2:51925313-51925332 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG - chr1_2:51925365-51925384 Msa0076100:CDS 45.0%
AAGAATCAACCGAGTGGCAT+TGG + chr1_2:51925377-51925396 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1_2:51925458-51925477 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1_2:51925518-51925537 None:intergenic 45.0%
TTGGTACTATCGGTGGATAG+TGG + chr1_2:51925544-51925563 None:intergenic 45.0%
CTATCCACCGATAGTACCAA+TGG - chr1_2:51925544-51925563 Msa0076100:intron 45.0%
AGAACCATTGGTACTATCGG+TGG + chr1_2:51925551-51925570 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1_2:51925563-51925582 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG + chr1_2:51926064-51926083 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG + chr1_2:51926065-51926084 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG - chr1_2:51926066-51926085 Msa0076100:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG - chr1_2:51926067-51926086 Msa0076100:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG + chr1_2:51926167-51926186 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG + chr1_2:51926237-51926256 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG + chr1_2:51926285-51926304 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1_2:51926320-51926339 Msa0076100:intron 45.0%
TGCTATATGACTGACAGACC+AGG + chr1_2:51926341-51926360 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG - chr1_2:51927131-51927150 Msa0076100:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1_2:51927138-51927157 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1_2:51927136-51927155 Msa0076100:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1_2:51927237-51927256 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1_2:51927241-51927260 Msa0076100:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1_2:51927407-51927426 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1_2:51927407-51927426 Msa0076100:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1_2:51927441-51927460 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG + chr1_2:51927516-51927535 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1_2:51927584-51927603 Msa0076100:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1_2:51927585-51927604 Msa0076100:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1_2:51927769-51927788 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1_2:51927768-51927787 Msa0076100:intron 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1_2:51928022-51928041 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG - chr1_2:51928087-51928106 Msa0076100:CDS 45.0%
CAGTTCATTACCCGGAATGT+GGG - chr1_2:51928088-51928107 Msa0076100:CDS 45.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1_2:51926575-51926594 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1_2:51926958-51926977 Msa0076100:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1_2:51926959-51926978 Msa0076100:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG - chr1_2:51922848-51922867 Msa0076100:exon 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG - chr1_2:51923038-51923057 Msa0076100:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG - chr1_2:51923039-51923058 Msa0076100:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG - chr1_2:51923063-51923082 Msa0076100:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG - chr1_2:51923107-51923126 Msa0076100:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG + chr1_2:51923114-51923133 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG + chr1_2:51923619-51923638 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG - chr1_2:51923640-51923659 Msa0076100:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG + chr1_2:51923656-51923675 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG + chr1_2:51923937-51923956 None:intergenic 50.0%
TTAGTGGCGGTTAAGATGGG+GGG + chr1_2:51924457-51924476 None:intergenic 50.0%
CTTAGTGGCGGTTAAGATGG+GGG + chr1_2:51924458-51924477 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG + chr1_2:51924669-51924688 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG - chr1_2:51925248-51925267 Msa0076100:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1_2:51925308-51925327 Msa0076100:intron 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1_2:51925451-51925470 Msa0076100:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1_2:51925459-51925478 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG - chr1_2:51926070-51926089 Msa0076100:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG - chr1_2:51926117-51926136 Msa0076100:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG + chr1_2:51926127-51926146 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG + chr1_2:51926138-51926157 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG + chr1_2:51926236-51926255 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG + chr1_2:51926238-51926257 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1_2:51927000-51927019 Msa0076100:intron 50.0%
GTTGCCTATGCTGCTCCATT+TGG + chr1_2:51927414-51927433 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG - chr1_2:51927581-51927600 Msa0076100:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1_2:51927586-51927605 Msa0076100:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1_2:51928019-51928038 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG + chr1_2:51928146-51928165 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG + chr1_2:51928243-51928262 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG - chr1_2:51923014-51923033 Msa0076100:intron 55.0%
CAGACTCCTTGTCAAGGAGC+CGG - chr1_2:51923610-51923629 Msa0076100:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG - chr1_2:51924653-51924672 Msa0076100:intron 55.0%
CTTGTCCCACTACGTGGGAT+CGG + chr1_2:51925168-51925187 None:intergenic 55.0%
! CAAGCCTTGTCCCACTACGT+GGG + chr1_2:51925173-51925192 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG + chr1_2:51925533-51925552 None:intergenic 55.0%
CCCCTGCGTCAATACCAAAG+AGG - chr1_2:51926233-51926252 Msa0076100:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG + chr1_2:51926282-51926301 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1_2:51927003-51927022 Msa0076100:intron 55.0%
AGGGTTGACCAGATGGAGGA+TGG - chr1_2:51927007-51927026 Msa0076100:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG - chr1_2:51927507-51927526 Msa0076100:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1_2:51927587-51927606 Msa0076100:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG - chr1_2:51927877-51927896 Msa0076100:CDS 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1_2:51928016-51928035 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG - chr1_2:51924661-51924680 Msa0076100:intron 60.0%
!! ATGGTGCCGATCCCACGTAG+TGG - chr1_2:51925159-51925178 Msa0076100:intron 60.0%
!! TGGTGCCGATCCCACGTAGT+GGG - chr1_2:51925160-51925179 Msa0076100:intron 60.0%
! CGATCCCACGTAGTGGGACA+AGG - chr1_2:51925166-51925185 Msa0076100:intron 60.0%
! CCAAGCCTTGTCCCACTACG+TGG + chr1_2:51925174-51925193 None:intergenic 60.0%
! CCACGTAGTGGGACAAGGCT+TGG - chr1_2:51925171-51925190 Msa0076100:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG + chr1_2:51926250-51926269 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG + chr1_2:51926260-51926279 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG + chr1_2:51926270-51926289 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG + chr1_2:51926271-51926290 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG + chr1_2:51926276-51926295 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1_2:51927588-51927607 Msa0076100:intron 60.0%
CCGGTAGTTGCCCACATTCC+GGG + chr1_2:51928101-51928120 None:intergenic 60.0%
CCCGGAATGTGGGCAACTAC+CGG - chr1_2:51928098-51928117 Msa0076100:CDS 60.0%
GCCGGTAGTTGCCCACATTC+CGG + chr1_2:51928102-51928121 None:intergenic 60.0%
TGCTTCTCGCACGGGCTCGT+CGG + chr1_2:51926056-51926075 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG + chr1_2:51926261-51926280 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG + chr1_2:51926272-51926291 None:intergenic 65.0%
!! TGATGGTGGTGGGGGGTGGT+GGG - chr1_2:51927595-51927614 Msa0076100:intron 65.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1_2:51927822-51927841 Msa0076100:CDS 65.0%
!! GTGATGGTGGTGGGGGGTGG+TGG - chr1_2:51927594-51927613 Msa0076100:intron 70.0%
!! GATGGTGGTGGGGGGTGGTG+GGG - chr1_2:51927596-51927615 Msa0076100:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1_2:51927591-51927610 Msa0076100:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51922574 51928349 51922574 ID=Msa0076100;Name=Msa0076100
chr1_2 mRNA 51922574 51928349 51922574 ID=Msa0076100-mRNA-1;Parent=Msa0076100;Name=Msa0076100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=168|1|1|1|1|1|6|289|249
chr1_2 exon 51922574 51922933 51922574 ID=Msa0076100-mRNA-1:exon:16025;Parent=Msa0076100-mRNA-1
chr1_2 exon 51923025 51923171 51923025 ID=Msa0076100-mRNA-1:exon:16024;Parent=Msa0076100-mRNA-1
chr1_2 exon 51925334 51925493 51925334 ID=Msa0076100-mRNA-1:exon:16023;Parent=Msa0076100-mRNA-1
chr1_2 exon 51925594 51925653 51925594 ID=Msa0076100-mRNA-1:exon:16022;Parent=Msa0076100-mRNA-1
chr1_2 exon 51927795 51927916 51927795 ID=Msa0076100-mRNA-1:exon:16021;Parent=Msa0076100-mRNA-1
chr1_2 exon 51927992 51928349 51927992 ID=Msa0076100-mRNA-1:exon:16020;Parent=Msa0076100-mRNA-1
chr1_2 five_prime_UTR 51928182 51928349 51928182 ID=Msa0076100-mRNA-1:five_prime_utr;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51927992 51928181 51927992 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51927795 51927916 51927795 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51925594 51925653 51925594 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51925334 51925493 51925334 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51923025 51923171 51923025 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 CDS 51922863 51922933 51922863 ID=Msa0076100-mRNA-1:cds;Parent=Msa0076100-mRNA-1
chr1_2 three_prime_UTR 51922574 51922862 51922574 ID=Msa0076100-mRNA-1:three_prime_utr;Parent=Msa0076100-mRNA-1
Gene Sequence

>Msa0076100

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0076100

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*