AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178860 MtrunA17_Chr1g0208751 99.821 559 1 0 1 559 1 559 0.0 1132
Msa0178860 MtrunA17_Chr1g0208761 91.771 559 43 3 1 556 1 559 0.0 1000
Msa0178860 MtrunA17_Chr7g0229391 69.053 475 140 3 82 550 17 490 0.0 631
Msa0178860 MtrunA17_CPg0493401 69.118 476 138 4 82 550 17 490 0.0 629
Msa0178860 MtrunA17_Chr3g0090971 68.908 476 139 4 82 550 17 490 0.0 626
Msa0178860 MtrunA17_Chr4g0016371 70.419 453 126 3 104 550 1 451 0.0 613
Msa0178860 MtrunA17_Chr2g0310971 60.152 394 142 6 159 549 29 410 9.58e-158 457
Msa0178860 MtrunA17_Chr2g0310861 60.152 394 142 6 159 549 29 410 9.58e-158 457
Msa0178860 MtrunA17_Chr2g0310911 60.152 394 142 6 159 549 29 410 9.58e-158 457
Msa0178860 MtrunA17_Chr2g0311041 60.152 394 142 6 159 549 29 410 9.58e-158 457
Msa0178860 MtrunA17_Chr7g0222041 63.607 305 82 5 82 379 17 299 5.67e-114 340
Msa0178860 MtrunA17_Chr7g0276011 65.724 283 88 4 82 357 17 297 1.00e-110 333
Msa0178860 MtrunA17_Chr6g0470741 64.286 266 86 4 82 340 17 280 2.87e-99 302
Msa0178860 MtrunA17_Chr7g0227481 64.679 218 52 1 299 516 1 193 2.35e-92 281
Msa0178860 MtrunA17_Chr2g0310901 60.870 161 50 4 1 159 2 151 3.99e-51 173
Msa0178860 MtrunA17_Chr2g0310851 60.870 161 50 4 1 159 2 151 3.99e-51 173
Msa0178860 MtrunA17_Chr2g0310961 60.870 161 50 4 1 159 2 151 3.99e-51 173
Msa0178860 MtrunA17_Chr2g0311031 60.870 161 50 4 1 159 2 151 3.99e-51 173
Msa0178860 MtrunA17_Chr7g0222051 69.298 114 35 0 434 547 1 114 4.43e-49 165
Msa0178860 MtrunA17_Chr1g0187711 68.750 80 25 0 373 452 5 84 1.49e-31 117
Msa0178860 MtrunA17_Chr7g0250051 28.788 396 247 12 121 493 59 442 7.05e-28 117
Msa0178860 MtrunA17_Chr1g0211291 28.846 364 228 8 153 493 89 444 8.58e-28 116
Msa0178860 MtrunA17_Chr4g0003551 47.244 127 61 2 90 210 2 128 2.65e-27 106
Msa0178860 MtrunA17_Chr4g0000341 28.012 332 213 9 180 493 203 526 1.71e-25 110
Msa0178860 MtrunA17_Chr7g0227491 47.321 112 54 1 104 210 1 112 1.10e-23 96.3
Msa0178860 MtrunA17_MTg0490471 25.077 323 221 4 124 434 64 377 2.65e-20 94.4
Msa0178860 MtrunA17_Chr6g0472491 86.957 69 8 1 1 69 1 68 4.33e-18 79.7
Msa0178860 MtrunA17_Chr3g0110291 39.716 141 53 7 2 142 3 111 2.64e-16 75.1
Msa0178860 MtrunA17_Chr4g0015651 24.228 421 277 11 98 506 54 444 6.26e-16 80.9
Msa0178860 MtrunA17_Chr4g0016741 24.228 421 277 11 98 506 54 444 6.26e-16 80.9
Msa0178860 MtrunA17_CPg0492941 24.228 421 277 11 98 506 54 444 6.26e-16 80.9
Msa0178860 MtrunA17_Chr7g0225621 79.487 39 8 0 299 337 1 39 1.15e-15 72.0
Msa0178860 MtrunA17_Chr3g0132421 77.778 45 10 0 98 142 10 54 1.83e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178860 AT5G08680.1 86.424 523 64 3 37 556 41 559 0.0 917
Msa0178860 AT5G08690.1 84.962 532 72 3 30 556 28 556 0.0 902
Msa0178860 AT5G08670.1 85.824 522 69 2 37 556 38 556 0.0 902
Msa0178860 ATCG00480.1 68.894 479 142 3 82 554 17 494 0.0 635
Msa0178860 AT1G20260.1 28.463 397 248 11 121 493 58 442 2.71e-28 118
Msa0178860 AT1G76030.1 28.788 396 247 11 121 493 58 441 6.70e-28 117
Msa0178860 AT4G38510.5 28.283 396 249 11 121 493 66 449 9.54e-28 117
Msa0178860 AT4G38510.1 28.283 396 249 11 121 493 59 442 1.11e-27 117
Msa0178860 AT4G38510.3 28.283 396 249 11 121 493 59 442 1.11e-27 117
Msa0178860 AT4G38510.4 28.283 396 249 11 121 493 59 442 1.11e-27 117
Msa0178860 AT4G38510.2 28.283 396 249 11 121 493 59 442 1.11e-27 117
Msa0178860 AT1G78900.1 27.350 351 224 10 208 541 229 565 1.54e-25 111
Msa0178860 AT1G78900.2 27.350 351 224 10 208 541 229 565 1.54e-25 111
Msa0178860 ATMG01190.1 26.667 300 199 4 147 434 87 377 3.93e-21 97.4
Msa0178860 AT2G07698.1 26.263 297 198 4 150 434 360 647 9.15e-20 94.0
Msa0178860 ATCG00120.1 23.810 483 298 15 98 546 54 500 9.58e-17 83.6

Find 186 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTTCTCCACTTATTT+TGG 0.083323 1_4:-66297013 Msa0178860:CDS
CGTGCCCGTGTCGGTCTTAC+TGG 0.200311 1_4:-66298668 Msa0178860:CDS
TCAAGATATCATTGCTATTC+TGG 0.206828 1_4:-66296929 Msa0178860:CDS
GATCCTTGTTACTGGTATTA+AGG 0.259182 1_4:-66299245 Msa0178860:intron
GGACGTATCATGAATGTTAT+TGG 0.260657 1_4:-66299470 Msa0178860:CDS
AAAATTACTGATGAATTTAC+TGG 0.279082 1_4:-66300401 Msa0178860:CDS
TGCTACCACCTTTGCTCACT+TGG 0.289656 1_4:-66297226 Msa0178860:CDS
GGTCAAGTTTGTCAGGTTAT+TGG 0.301021 1_4:-66300365 Msa0178860:CDS
CAATCTCGCGCTTCACCTTA+TGG 0.302992 1_4:-66300521 Msa0178860:CDS
TTCTCTGTGTTTGCTGGTGT+TGG 0.303687 1_4:-66298916 Msa0178860:CDS
GGTGGTTTCTCTGTGTTTGC+TGG 0.310509 1_4:-66298922 Msa0178860:CDS
GTTGGAAGTGGCTCAGCATT+TGG 0.326827 1_4:-66300258 Msa0178860:CDS
AGCTGGTGCGGCGGCGGCAG+CGG 0.335740 1_4:+66300466 None:intergenic
CAAGATATCATTGCTATTCT+GGG 0.368654 1_4:-66296928 Msa0178860:CDS
CCGACACGGGCACGAGCACC+AGG 0.372154 1_4:+66298677 None:intergenic
ATCCAATCTTTCCTCCCCTT+TGG 0.376397 1_4:+66299106 None:intergenic
ACTGATGAATTTACTGGAAA+AGG 0.377841 1_4:-66300395 Msa0178860:CDS
AGAGGTAATTGAACCCTTCT+TGG 0.378135 1_4:+66297296 None:intergenic
GCATTTAGGTTCCCGTTGGC+AGG 0.378643 1_4:-66299502 Msa0178860:intron
AAGAAGGAGGTTCCCGGAGG+TGG 0.379753 1_4:-66300425 Msa0178860:CDS
ATTGGATTGTTTGGTGGTGC+TGG 0.384032 1_4:-66299090 Msa0178860:CDS
AATGAAGATGCTAGGGTTTG+TGG 0.384710 1_4:+66300679 None:intergenic
CTATCCTGCTGTTGATCCAT+TGG 0.388341 1_4:-66297049 Msa0178860:CDS
GGAGGAAAGATTGGATTGTT+TGG 0.394972 1_4:-66299099 Msa0178860:CDS
TCTAGATCATTCTTCGAGAT+TGG 0.401462 1_4:-66300282 Msa0178860:CDS
GCAGGAGCTTCTCTATGAAT+AGG 0.403583 1_4:+66299295 None:intergenic
CCAACATTGTCTACTGATCT+TGG 0.404691 1_4:-66297345 Msa0178860:CDS
ATCTTTCCTCCCCTTTGGTA+TGG 0.406086 1_4:+66299111 None:intergenic
CCGGCGAAGAAGGAGGTTCC+CGG 0.406125 1_4:-66300431 Msa0178860:CDS
CCCGTTGGCAGGGCTACCCT+TGG 0.406509 1_4:-66299491 Msa0178860:CDS
TTGGAAGTGGCTCAGCATTT+GGG 0.411969 1_4:-66300257 Msa0178860:CDS
TACCAAAGGGGAGGAAAGAT+TGG 0.412235 1_4:-66299108 Msa0178860:CDS
GAACAACAGATCCTTGTTAC+TGG 0.412746 1_4:-66299253 Msa0178860:CDS
AGACGGAGCTGGTGCGGCGG+CGG 0.416189 1_4:+66300460 None:intergenic
CATAAGGTGAAGCGCGAGAT+TGG 0.420817 1_4:+66300522 None:intergenic
TTCAACTCAACATATTTGCC+TGG 0.425059 1_4:+66296799 None:intergenic
TTCGAGATTGGTGTTGGAAG+TGG 0.436166 1_4:-66300270 Msa0178860:CDS
TTCTTCGCCGGAGGCGCAGA+CGG 0.437983 1_4:+66300443 None:intergenic
GCCGGAGGCGCAGACGGAGC+TGG 0.440470 1_4:+66300449 None:intergenic
GATGTTGAGGCAGTGATTGA+TGG 0.442204 1_4:+66300557 None:intergenic
ACCAGCTCCGTCTGCGCCTC+CGG 0.443943 1_4:-66300450 Msa0178860:CDS
AGGTGGAAATGAAAGAATAA+AGG 0.451327 1_4:-66300749 Msa0178860:five_prime_UTR
TGAAAATAGATTTCTGAGCT+TGG 0.452396 1_4:-66297075 Msa0178860:intron
AGAGAGAGAATGAAGATGCT+AGG 0.453668 1_4:+66300671 None:intergenic
GTCTGCGCCTCCGGCGAAGA+AGG 0.456242 1_4:-66300441 Msa0178860:CDS
GGTCGTATTCCATCTGCTGT+TGG 0.461688 1_4:-66297375 Msa0178860:CDS
AGTCAGCAACGCGGTTTAAG+AGG 0.462534 1_4:+66300495 None:intergenic
AGCGGTCGGTCAAGTTTGTC+AGG 0.462609 1_4:-66300372 Msa0178860:CDS
CCTTTGTGTTATTTAATAAG+TGG 0.463636 1_4:-66295867 Msa0178860:three_prime_UTR
CCTCTCTCTCTCATCGAAGA+TGG 0.464445 1_4:-66300639 Msa0178860:exon
TATTACATATTAAATTTGAC+GGG 0.469902 1_4:-66300827 Msa0178860:five_prime_UTR
TTGTTTGGTGGTGCTGGTGT+AGG 0.469965 1_4:-66299084 Msa0178860:CDS
ATAAGGTGAAGCGCGAGATT+GGG 0.471370 1_4:+66300523 None:intergenic
TGCTCATCACCCAAAATAAG+TGG 0.473721 1_4:+66297003 None:intergenic
GGAGAACACTCAAAGTTTCC+AGG 0.477010 1_4:-66296776 Msa0178860:intron
TACTTTCTTGTTAAGAACGT+TGG 0.478851 1_4:-66295820 Msa0178860:three_prime_UTR
TGAATAGATATTTACACTGA+TGG 0.479353 1_4:+66300154 None:intergenic
CCAAGGGTAGCCCTGCCAAC+GGG 0.484569 1_4:+66299491 None:intergenic
TTATTACATATTAAATTTGA+CGG 0.484668 1_4:-66300828 Msa0178860:five_prime_UTR
GGAGAACCTATCGATCATAA+AGG 0.484786 1_4:-66299449 Msa0178860:CDS
GAGAGAGAATGAAGATGCTA+GGG 0.484830 1_4:+66300672 None:intergenic
AGGCAAATATGTTGAGTTGA+AGG 0.484986 1_4:-66296797 Msa0178860:CDS
GAAGTCTTCACTGGTGCCCC+AGG 0.485134 1_4:-66296817 Msa0178860:CDS
AAGTGAGCAAAGGTGGTAGC+AGG 0.486320 1_4:+66297228 None:intergenic
TGAAGATGCTGCTGATTCCT+TGG 0.486591 1_4:+66296098 None:intergenic
CCCTTTGGTATGGTGCAAGC+AGG 0.487695 1_4:+66299121 None:intergenic
TCCGATCTTGACTGCTCTTG+AGG 0.488534 1_4:-66300306 Msa0178860:CDS
TAAAGGACAAAATGAGGGGA+GGG 0.489276 1_4:+66296059 None:intergenic
ATGAGAGAGAGAGGGAGAGA+GGG 0.491295 1_4:+66300648 None:intergenic
CATTAAGCTGGGTGAAAAGC+AGG 0.492871 1_4:-66298839 Msa0178860:intron
GCAAAGGTGGTAGCAGGAGC+AGG 0.495043 1_4:+66297234 None:intergenic
AAGACTTCTGCCACGTGGAA+AGG 0.495827 1_4:+66296832 None:intergenic
TATAGATAAAGGACAAAATG+AGG 0.499751 1_4:+66296053 None:intergenic
TACAACAGTGTTGTCTAGAC+AGG 0.501816 1_4:-66297199 Msa0178860:intron
AAGAGAAAAGAAGAAACAAA+CGG 0.503055 1_4:-66300801 Msa0178860:five_prime_UTR
GGGCAGTTGACCACAGAACT+TGG 0.504661 1_4:+66295898 None:intergenic
TCAGAGGTGTCTGCCCTGCT+TGG 0.505198 1_4:-66297396 Msa0178860:CDS
CAGCAGGCACATATATAGCT+TGG 0.510204 1_4:+66297271 None:intergenic
GTTGTACACCACGAGCAGTT+TGG 0.510260 1_4:+66296977 None:intergenic
GAAGATGGCTTCACGCAGAT+TGG 0.511649 1_4:-66300624 Msa0178860:exon
TCAACTCAACATATTTGCCT+GGG 0.512319 1_4:+66296800 None:intergenic
GGAAAGATTGGATTGTTTGG+TGG 0.512411 1_4:-66299096 Msa0178860:CDS
CGCAGACGGAGCTGGTGCGG+CGG 0.513405 1_4:+66300457 None:intergenic
TGAGAGTGGTGTCATTAAGC+TGG 0.514665 1_4:-66298851 Msa0178860:CDS
TCATTCTTCGAGATTGGTGT+TGG 0.515515 1_4:-66300276 Msa0178860:CDS
CCGGGAACCTCCTTCTTCGC+CGG 0.517979 1_4:+66300431 None:intergenic
GGTAATTGAACCCTTCTTGG+TGG 0.519165 1_4:+66297299 None:intergenic
TATAAAATGCCTGCTCTGAA+AGG 0.522100 1_4:+66296166 None:intergenic
AACAATGTTGCTAAGGCTCA+TGG 0.524856 1_4:-66299033 Msa0178860:intron
TATCATTGCTATTCTGGGAA+TGG 0.525736 1_4:-66296923 Msa0178860:CDS
AGCAAATGTGCTCTTGTGTA+TGG 0.527028 1_4:-66298716 Msa0178860:CDS
CGGTTTAAGAGGTAGCCATA+AGG 0.528728 1_4:+66300506 None:intergenic
ACTTATCAACAATGTTGCTA+AGG 0.530040 1_4:-66299040 Msa0178860:CDS
ATAGATAAAGGACAAAATGA+GGG 0.531653 1_4:+66296054 None:intergenic
AGAGAAAAGAAGAAACAAAC+GGG 0.534282 1_4:-66300800 Msa0178860:five_prime_UTR
CTGAAGGTGTTGTCCGTGGA+TGG 0.535684 1_4:-66300199 Msa0178860:CDS
GTGGCTCAGCATTTGGGTGA+AGG 0.538038 1_4:-66300251 Msa0178860:CDS
CATTTAGGTTCCCGTTGGCA+GGG 0.541826 1_4:-66299501 Msa0178860:intron
AATTCGCCTTTATGATCGAT+AGG 0.542417 1_4:+66299443 None:intergenic
GGGTTTGTGGAGTGAGAGAG+TGG 0.542477 1_4:+66300692 None:intergenic
GAATCCAATGGATCAACAGC+AGG 0.543347 1_4:+66297045 None:intergenic
CCTGCTTGCACCATACCAAA+GGG 0.545094 1_4:-66299121 Msa0178860:CDS
ATATGATGACCTTTCAGAGC+AGG 0.545699 1_4:-66296175 Msa0178860:CDS
GCGTATTACAACCACCAAGA+AGG 0.546572 1_4:-66297310 Msa0178860:CDS
GTTGCTTGCTCAACAAAAGC+AGG 0.548745 1_4:+66299277 None:intergenic
GGATCTGTCAAATCATCAGC+AGG 0.549266 1_4:+66297255 None:intergenic
CACGTGGCAGAAGTCTTCAC+TGG 0.550208 1_4:-66296826 Msa0178860:CDS
AGGCGCAGACGGAGCTGGTG+CGG 0.551051 1_4:+66300454 None:intergenic
ACCTCAAGAGCAGTCAAGAT+CGG 0.553967 1_4:+66300305 None:intergenic
CCTGGTGCTCGTGCCCGTGT+CGG 0.555324 1_4:-66298677 Msa0178860:CDS
TCCAAGGGTAGCCCTGCCAA+CGG 0.557056 1_4:+66299490 None:intergenic
AGAAGGAGGTTCCCGGAGGT+GGG 0.562284 1_4:-66300424 Msa0178860:CDS
GAATAGATATTTACACTGAT+GGG 0.564594 1_4:+66300155 None:intergenic
GTTGACGTCAGATTTGAAGA+AGG 0.565009 1_4:-66300335 Msa0178860:CDS
CAACAAACACTCAGAATGAA+AGG 0.566255 1_4:+66295937 None:intergenic
GACACGGGCACGAGCACCAG+GGG 0.566580 1_4:+66298679 None:intergenic
ACCTGCTTGCACCATACCAA+AGG 0.568701 1_4:-66299122 Msa0178860:CDS
GGAGGTTAGCCTCGATGTTG+AGG 0.570201 1_4:+66300544 None:intergenic
GTTTCGATGAAGATCGGCGA+AGG 0.571803 1_4:+66300579 None:intergenic
TTGATGGTTTCGATGAAGAT+CGG 0.572741 1_4:+66300573 None:intergenic
AACTTACAGGGTGTGTTGGA+TGG 0.575385 1_4:-66296201 Msa0178860:intron
CCATCTTCGATGAGAGAGAG+AGG 0.575795 1_4:+66300639 None:intergenic
CGTATTACAACCACCAAGAA+GGG 0.576665 1_4:-66297309 Msa0178860:CDS
GGTTGGTAACCAACAGCAGA+TGG 0.577576 1_4:+66297366 None:intergenic
ATGAATAGGCAAATAATGCT+CGG 0.578382 1_4:+66299309 None:intergenic
GGAACCTCCTTCTTCGCCGG+AGG 0.581216 1_4:+66300434 None:intergenic
AGATGGAATACGACCAAGCA+GGG 0.581769 1_4:+66297383 None:intergenic
GATGAGAGAGAGAGGGAGAG+AGG 0.584027 1_4:+66300647 None:intergenic
ATACGAGATGTTGAATCCAA+TGG 0.586954 1_4:+66297033 None:intergenic
TAACATTCATGATACGTCCA+AGG 0.587125 1_4:+66299474 None:intergenic
TCTACTTGCTGAATTTGTGA+TGG 0.589025 1_4:-66295747 Msa0178860:three_prime_UTR
CAGATGGAATACGACCAAGC+AGG 0.590811 1_4:+66297382 None:intergenic
TATTGCATTTAGGTTCCCGT+TGG 0.591161 1_4:-66299506 Msa0178860:intron
GTATAACTTACAGGGTGTGT+TGG 0.591327 1_4:-66296205 Msa0178860:intron
TGCGCCTCCGGCGAAGAAGG+AGG 0.594849 1_4:-66300438 Msa0178860:CDS
AGCATCCAAGTGAGCAAAGG+TGG 0.598239 1_4:+66297221 None:intergenic
TTCAAATCTGACGTCAACGA+CGG 0.598861 1_4:+66300340 None:intergenic
TGTTGTGAGAACTATTGCTA+TGG 0.599192 1_4:-66300228 Msa0178860:CDS
TGTACAAGTCATTACCCTCA+CGG 0.600998 1_4:+66298884 None:intergenic
GATCAGTAGACAATGTTGGT+TGG 0.607921 1_4:+66297349 None:intergenic
AGGTGAAGCGCGAGATTGGG+AGG 0.610480 1_4:+66300526 None:intergenic
CGACACGGGCACGAGCACCA+GGG 0.613887 1_4:+66298678 None:intergenic
TTTACTGGAAAAGGAGCGGT+CGG 0.614536 1_4:-66300386 Msa0178860:CDS
TGGTGCTTACTTGAGTAAAG+CGG 0.618849 1_4:+66298576 None:intergenic
AAGTCCAGTAAGACCGACAC+GGG 0.620214 1_4:+66298664 None:intergenic
CCAAGATCAGTAGACAATGT+TGG 0.620434 1_4:+66297345 None:intergenic
GTACAAGTCATTACCCTCAC+GGG 0.622213 1_4:+66298885 None:intergenic
CATCTTGTCCTTCAGCATCA+CGG 0.623861 1_4:+66298624 None:intergenic
GAGAGTGGTGTCATTAAGCT+GGG 0.624808 1_4:-66298850 Msa0178860:CDS
ATAAAGGACAAAATGAGGGG+AGG 0.625598 1_4:+66296058 None:intergenic
ACATTGTCTACTGATCTTGG+AGG 0.626628 1_4:-66297342 Msa0178860:CDS
GCTACTGAAGGTGTTGTCCG+TGG 0.627017 1_4:-66300203 Msa0178860:CDS
CCACTTATTAAATAACACAA+AGG 0.632401 1_4:+66295867 None:intergenic
CACATATATAGCTTGGACAG+AGG 0.632824 1_4:+66297278 None:intergenic
TGTTGAGAACTCTCCATCCA+CGG 0.636923 1_4:+66300186 None:intergenic
CAACTCAACATATTTGCCTG+GGG 0.640965 1_4:+66296801 None:intergenic
GAGCATTTCCGTGATGCTGA+AGG 0.641193 1_4:-66298632 Msa0178860:CDS
GGATGGAGAGTTCTCAACAC+TGG 0.642951 1_4:-66300182 Msa0178860:CDS
TGTAGCATCCAAGTGAGCAA+AGG 0.644891 1_4:+66297218 None:intergenic
AACATTCATGATACGTCCAA+GGG 0.646240 1_4:+66299475 None:intergenic
TAGATAAAGGACAAAATGAG+GGG 0.647422 1_4:+66296055 None:intergenic
TAATAAGTGGAAGATGCAAG+AGG 0.652630 1_4:-66295854 Msa0178860:three_prime_UTR
CATCTTCGATGAGAGAGAGA+GGG 0.656376 1_4:+66300640 None:intergenic
TATCGATGAAGTCATTGCAA+AGG 0.656711 1_4:-66296133 Msa0178860:CDS
TTTCGATGAAGATCGGCGAA+GGG 0.656946 1_4:+66300580 None:intergenic
GAGCACTACCAAACTGCTCG+TGG 0.658374 1_4:-66296985 Msa0178860:CDS
GTGAGATGTACCAAGTTCTG+TGG 0.663357 1_4:-66295908 Msa0178860:intron
CAGTGAAGACTTCTGCCACG+TGG 0.672728 1_4:+66296827 None:intergenic
TCAAGAGCAGTCAAGATCGG+AGG 0.674140 1_4:+66300308 None:intergenic
CTTGCACCATACCAAAGGGG+AGG 0.675495 1_4:-66299117 Msa0178860:CDS
ATTGCTATGGATGCTACTGA+AGG 0.678096 1_4:-66300215 Msa0178860:CDS
CTTAAGTCAGCCTTTCCACG+TGG 0.682611 1_4:-66296842 Msa0178860:CDS
AAAGGCAGAGAAGATTGCCA+AGG 0.685398 1_4:-66296115 Msa0178860:CDS
TGAATTTACTGGAAAAGGAG+CGG 0.685743 1_4:-66300390 Msa0178860:CDS
ATACCTTAATACCAGTAACA+AGG 0.686367 1_4:+66299242 None:intergenic
TACAGAGAAATGATTGAGAG+TGG 0.693204 1_4:-66298865 Msa0178860:CDS
TAAGTCCAGTAAGACCGACA+CGG 0.693275 1_4:+66298663 None:intergenic
GTTGGAGAAAGAACCCGTGA+GGG 0.695614 1_4:-66298898 Msa0178860:CDS
TGTTGGAGAAAGAACCCGTG+AGG 0.716517 1_4:-66298899 Msa0178860:CDS
CAATCACTGCCTCAACATCG+AGG 0.719323 1_4:-66300553 Msa0178860:CDS
ACACGGGCACGAGCACCAGG+GGG 0.726552 1_4:+66298680 None:intergenic
GTAATTGTAGGCTAACTCAG+AGG 0.733224 1_4:-66297412 Msa0178860:intron
ATTACATATTAAATTTGACG+GGG 0.734111 1_4:-66300826 Msa0178860:five_prime_UTR
GCGAAGAAGGAGGTTCCCGG+AGG 0.734342 1_4:-66300428 Msa0178860:CDS
CTGCTTGCACCATACCAAAG+GGG 0.735053 1_4:-66299120 Msa0178860:CDS
CGGTTGCATAGTCAGCAACG+CGG 0.742675 1_4:+66300486 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTACATATTAAATTTGA+CGG - chr1_4:66295754-66295773 Msa0178860:three_prime_UTR 10.0%
!! AAGTTATAAAAATTTCAAAA+TGG + chr1_4:66300614-66300633 None:intergenic 10.0%
!! TATTACATATTAAATTTGAC+GGG - chr1_4:66295755-66295774 Msa0178860:three_prime_UTR 15.0%
!!! TTTTTATTGTTTTTTGATTG+TGG - chr1_4:66296646-66296665 Msa0178860:intron 15.0%
!! GAAAAGTTATAGAAATTAAA+CGG + chr1_4:66297020-66297039 None:intergenic 15.0%
!! TAGACTAAAAATAAATTTAG+AGG + chr1_4:66297175-66297194 None:intergenic 15.0%
!! ATAAAAAGATTTAAGGAAAT+GGG + chr1_4:66297382-66297401 None:intergenic 15.0%
!!! ATTTCCTTAAATCTTTTTAT+GGG - chr1_4:66297382-66297401 Msa0178860:CDS 15.0%
!! ACAAAAATGGAATAAAAAAA+AGG + chr1_4:66298481-66298500 None:intergenic 15.0%
!!! TTTTAATTTTAGAACTAGTT+CGG - chr1_4:66298903-66298922 Msa0178860:CDS 15.0%
!! AACATTAAAATAGTTCAATT+TGG - chr1_4:66298953-66298972 Msa0178860:intron 15.0%
!!! TTAAGGTAAACTATTTTTTT+GGG - chr1_4:66299007-66299026 Msa0178860:intron 15.0%
!!! TCTATATTTTAAATTTCTGT+TGG - chr1_4:66299943-66299962 Msa0178860:intron 15.0%
!! TTGCGAAAATTTAATAATTT+AGG - chr1_4:66300553-66300572 Msa0178860:CDS 15.0%
!!! TGAAATTTTTATAACTTGAA+TGG - chr1_4:66300617-66300636 Msa0178860:CDS 15.0%
!! ATTACATATTAAATTTGACG+GGG - chr1_4:66295756-66295775 Msa0178860:three_prime_UTR 20.0%
!! AAAATTACTGATGAATTTAC+TGG - chr1_4:66296181-66296200 Msa0178860:CDS 20.0%
!!! TGAATTTTTTTTGACTTTAC+TGG - chr1_4:66296476-66296495 Msa0178860:intron 20.0%
!!! ATCTGATTTTGAGATAATTT+TGG - chr1_4:66296518-66296537 Msa0178860:intron 20.0%
!!! AATTTTTATGTTGCATTTCA+TGG - chr1_4:66296545-66296564 Msa0178860:intron 20.0%
!!! TAAGTTTTGATTTTTTGAGA+AGG - chr1_4:66296610-66296629 Msa0178860:intron 20.0%
!! CATAAAAAGATTTAAGGAAA+TGG + chr1_4:66297383-66297402 None:intergenic 20.0%
!!! CATTTCCTTAAATCTTTTTA+TGG - chr1_4:66297381-66297400 Msa0178860:CDS 20.0%
!! GAAAAAAAATAAGGCAAAAT+TGG + chr1_4:66297429-66297448 None:intergenic 20.0%
!!! TTTGCCTTATTTTTTTTCAT+AGG - chr1_4:66297431-66297450 Msa0178860:intron 20.0%
!! ACAACCTATGAAAAAAAATA+AGG + chr1_4:66297438-66297457 None:intergenic 20.0%
!! ATGAACAATATTATTGAATG+TGG + chr1_4:66297794-66297813 None:intergenic 20.0%
!!! TATTTTTGGAGCTTAATTTA+AGG + chr1_4:66298334-66298353 None:intergenic 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG + chr1_4:66298443-66298462 None:intergenic 20.0%
!! TGGAATAAAAAAAAGGATAA+AGG + chr1_4:66298474-66298493 None:intergenic 20.0%
!!! AAAGTGGAATTACATTTTTT+AGG + chr1_4:66298724-66298743 None:intergenic 20.0%
!!! AAAAAATGTAATTCCACTTT+TGG - chr1_4:66298724-66298743 Msa0178860:CDS 20.0%
!!! GTTAAGGTAAACTATTTTTT+TGG - chr1_4:66299006-66299025 Msa0178860:intron 20.0%
!! TACATAAAAACCAAACATTA+CGG + chr1_4:66299071-66299090 None:intergenic 20.0%
!!! ATGTTTGGTTTTTATGTATA+TGG - chr1_4:66299073-66299092 Msa0178860:CDS 20.0%
!!! TGTATATGGTTTTTTATAGA+TGG - chr1_4:66299087-66299106 Msa0178860:CDS 20.0%
!! ATGAATAGACAATGATAAAA+AGG + chr1_4:66299126-66299145 None:intergenic 20.0%
!! AAGAACTAAATGATCTTATT+TGG - chr1_4:66299476-66299495 Msa0178860:CDS 20.0%
!!! AGAACTAAATGATCTTATTT+GGG - chr1_4:66299477-66299496 Msa0178860:CDS 20.0%
!!! TTAAGAATCGTTGAATTTTA+CGG + chr1_4:66299725-66299744 None:intergenic 20.0%
!! AAAAATTGAAAATACTCCTA+AGG + chr1_4:66300155-66300174 None:intergenic 20.0%
!! TTCTGATTATAACTTAACTA+GGG + chr1_4:66300303-66300322 None:intergenic 20.0%
!! ATTCTGATTATAACTTAACT+AGG + chr1_4:66300304-66300323 None:intergenic 20.0%
!!! ATTTTCGCAATTATAGATAA+AGG + chr1_4:66300543-66300562 None:intergenic 20.0%
!!! AAATGGAATATTTTGTTGTT+TGG + chr1_4:66300597-66300616 None:intergenic 20.0%
!! AAATAACACAAAGGAAAAAA+GGG + chr1_4:66300709-66300728 None:intergenic 20.0%
!! TAAATAACACAAAGGAAAAA+AGG + chr1_4:66300710-66300729 None:intergenic 20.0%
! AAGAGAAAAGAAGAAACAAA+CGG - chr1_4:66295781-66295800 Msa0178860:three_prime_UTR 25.0%
! GAATAGATATTTACACTGAT+GGG + chr1_4:66296430-66296449 None:intergenic 25.0%
! TGAATAGATATTTACACTGA+TGG + chr1_4:66296431-66296450 None:intergenic 25.0%
! CGTGATTACAGTAAATTAAA+CGG + chr1_4:66296746-66296765 None:intergenic 25.0%
!!! TACGCTGTACATATTTTAAA+TGG - chr1_4:66296782-66296801 Msa0178860:CDS 25.0%
!!! ACGCTGTACATATTTTAAAT+GGG - chr1_4:66296783-66296802 Msa0178860:CDS 25.0%
! TTGCAATTAAAAGTAAAAGC+AGG - chr1_4:66296812-66296831 Msa0178860:CDS 25.0%
!! AACATACTTAAAACGCTTTT+TGG + chr1_4:66297042-66297061 None:intergenic 25.0%
! TTTGCCCATAAAAAGATTTA+AGG + chr1_4:66297389-66297408 None:intergenic 25.0%
! TGTATCAAAGTCGTTAATTA+TGG - chr1_4:66297824-66297843 Msa0178860:intron 25.0%
!! AGTTTGCATTAGTAAGTTTT+GGG + chr1_4:66298048-66298067 None:intergenic 25.0%
! CATTACCTGAAATTAAGTTA+AGG + chr1_4:66298444-66298463 None:intergenic 25.0%
!!! CTTAATTTCAGGTAATGTTT+TGG - chr1_4:66298447-66298466 Msa0178860:intron 25.0%
!!! TTATTCCATTTTTGTCCTAT+TGG - chr1_4:66298486-66298505 Msa0178860:intron 25.0%
! CTTTCAATCTTCAAATATGT+GGG - chr1_4:66298561-66298580 Msa0178860:intron 25.0%
! ACTGCAATGAAAAAAGATAA+AGG - chr1_4:66298650-66298669 Msa0178860:CDS 25.0%
! TTAGTCCTTAACTTAATTTC+AGG + chr1_4:66298688-66298707 None:intergenic 25.0%
! TGTGAAAAAAATACCAAAAG+TGG + chr1_4:66298740-66298759 None:intergenic 25.0%
!! TTTTTCACATTAAGTGATGA+TGG - chr1_4:66298840-66298859 Msa0178860:CDS 25.0%
! ACTGTGTATAGCTATTATTA+TGG + chr1_4:66298877-66298896 None:intergenic 25.0%
!!! GTAAACTATTTTTTTGGGTT+TGG - chr1_4:66299012-66299031 Msa0178860:intron 25.0%
!! TAAGAATCGTTGAATTTTAC+GGG + chr1_4:66299724-66299743 None:intergenic 25.0%
! TAAGAGTAAGGAAGTAAATA+GGG + chr1_4:66299859-66299878 None:intergenic 25.0%
! ATAAGAGTAAGGAAGTAAAT+AGG + chr1_4:66299860-66299879 None:intergenic 25.0%
! TTGACTTTATTACAAGTGTT+TGG - chr1_4:66300174-66300193 Msa0178860:CDS 25.0%
! ACATAATAACCTTCAAAAAC+AGG + chr1_4:66300270-66300289 None:intergenic 25.0%
! GTAAGTTATACCATACAAAA+AGG + chr1_4:66300368-66300387 None:intergenic 25.0%
!! TTTTGTATGGTATAACTTAC+AGG - chr1_4:66300368-66300387 Msa0178860:CDS 25.0%
! TTTGTATGGTATAACTTACA+GGG - chr1_4:66300369-66300388 Msa0178860:CDS 25.0%
! ATAGATAAAGGACAAAATGA+GGG + chr1_4:66300531-66300550 None:intergenic 25.0%
! TATAGATAAAGGACAAAATG+AGG + chr1_4:66300532-66300551 None:intergenic 25.0%
! ATAATTTAGGAACTCTTTCT+TGG - chr1_4:66300566-66300585 Msa0178860:CDS 25.0%
! AATAACACAAAGGAAAAAAG+GGG + chr1_4:66300708-66300727 None:intergenic 25.0%
! CCACTTATTAAATAACACAA+AGG + chr1_4:66300718-66300737 None:intergenic 25.0%
!!! CCTTTGTGTTATTTAATAAG+TGG - chr1_4:66300715-66300734 Msa0178860:five_prime_UTR 25.0%
AGAGAAAAGAAGAAACAAAC+GGG - chr1_4:66295782-66295801 Msa0178860:three_prime_UTR 30.0%
GAAAAATGGAAAAAGAATCG+AGG - chr1_4:66295813-66295832 Msa0178860:three_prime_UTR 30.0%
AGGTGGAAATGAAAGAATAA+AGG - chr1_4:66295833-66295852 Msa0178860:three_prime_UTR 30.0%
ACTGATGAATTTACTGGAAA+AGG - chr1_4:66296187-66296206 Msa0178860:CDS 30.0%
! GATAAATGGGGTCTTTTTAA+TGG - chr1_4:66296695-66296714 Msa0178860:intron 30.0%
AGTCCAAAAGAAAGTCAAAT+TGG + chr1_4:66296932-66296951 None:intergenic 30.0%
CAAAAGTAAAAACCAATAGC+AGG + chr1_4:66296978-66296997 None:intergenic 30.0%
CATAGTTGTGTATTGCATTT+AGG - chr1_4:66297066-66297085 Msa0178860:CDS 30.0%
ATGAATAGGCAAATAATGCT+CGG + chr1_4:66297276-66297295 None:intergenic 30.0%
ATACCTTAATACCAGTAACA+AGG + chr1_4:66297343-66297362 None:intergenic 30.0%
AGGAAAAACGGTTCTTATTA+TGG - chr1_4:66297518-66297537 Msa0178860:intron 30.0%
ACTTATCAACAATGTTGCTA+AGG - chr1_4:66297542-66297561 Msa0178860:intron 30.0%
! TGGGTGCATGATTTAAATTT+TGG + chr1_4:66298029-66298048 None:intergenic 30.0%
! CAGTTTGCATTAGTAAGTTT+TGG + chr1_4:66298049-66298068 None:intergenic 30.0%
! TGTTCTTTGTGTTTGGTAAT+TGG - chr1_4:66298179-66298198 Msa0178860:intron 30.0%
TAGTCCCTTAACTTAATTTC+AGG - chr1_4:66298436-66298455 Msa0178860:intron 30.0%
ATGAACCAATAGGACAAAAA+TGG + chr1_4:66298494-66298513 None:intergenic 30.0%
!! ATTTTCAAGCTTGAAATCCA+CGG - chr1_4:66298524-66298543 Msa0178860:intron 30.0%
CCACATATTTGAAGATTGAA+AGG + chr1_4:66298563-66298582 None:intergenic 30.0%
CCTTTCAATCTTCAAATATG+TGG - chr1_4:66298560-66298579 Msa0178860:intron 30.0%
CTTGAAAATCCATATGCAAA+AGG - chr1_4:66298623-66298642 Msa0178860:CDS 30.0%
TGTTGCCTGAAATTAAGTTA+AGG - chr1_4:66298680-66298699 Msa0178860:CDS 30.0%
!! TTTAGGAAAATTTGGTGTCA+CGG + chr1_4:66298787-66298806 None:intergenic 30.0%
!!! TTGCGTGTTTTAGGAAAATT+TGG + chr1_4:66298795-66298814 None:intergenic 30.0%
!!! AATTTTAGAACTAGTTCGGT+AGG - chr1_4:66298907-66298926 Msa0178860:CDS 30.0%
!!! ATTTTAGAACTAGTTCGGTA+GGG - chr1_4:66298908-66298927 Msa0178860:CDS 30.0%
TGAAAATAGATTTCTGAGCT+TGG - chr1_4:66299507-66299526 Msa0178860:intron 30.0%
! TATGCTTTCTCCACTTATTT+TGG - chr1_4:66299569-66299588 Msa0178860:intron 30.0%
!! ATGCTTTCTCCACTTATTTT+GGG - chr1_4:66299570-66299589 Msa0178860:intron 30.0%
! TCAAGATATCATTGCTATTC+TGG - chr1_4:66299653-66299672 Msa0178860:intron 30.0%
! CAAGATATCATTGCTATTCT+GGG - chr1_4:66299654-66299673 Msa0178860:intron 30.0%
AGTTAAAACAATCAAGTACC+TGG + chr1_4:66299827-66299846 None:intergenic 30.0%
ATACTGTGTCAATAAGAGTA+AGG + chr1_4:66299871-66299890 None:intergenic 30.0%
AGAAAAGACAATAAACCACA+AGG + chr1_4:66299926-66299945 None:intergenic 30.0%
!!! CTGTTTTTACTTTCAAAGCA+TGG - chr1_4:66299967-66299986 Msa0178860:intron 30.0%
ACGATGCAATTCAATAAAGA+AGG + chr1_4:66300044-66300063 None:intergenic 30.0%
! GTACACTTTTCTATCTGATA+TGG - chr1_4:66300074-66300093 Msa0178860:intron 30.0%
TGAAAATACTCCTAAGGAAT+AGG + chr1_4:66300149-66300168 None:intergenic 30.0%
!!! TCTGAAAATCCTGTTTTTGA+AGG - chr1_4:66300258-66300277 Msa0178860:CDS 30.0%
! TGGTTAATGACCTTTTTGTA+TGG - chr1_4:66300355-66300374 Msa0178860:CDS 30.0%
TAGATAAAGGACAAAATGAG+GGG + chr1_4:66300530-66300549 None:intergenic 30.0%
ATAACACAAAGGAAAAAAGG+GGG + chr1_4:66300707-66300726 None:intergenic 30.0%
TACTTTCTTGTTAAGAACGT+TGG - chr1_4:66300762-66300781 Msa0178860:five_prime_UTR 30.0%
AACGGGTCGAAAATGAAAAA+TGG - chr1_4:66295799-66295818 Msa0178860:three_prime_UTR 35.0%
AAATGGAAAAAGAATCGAGG+TGG - chr1_4:66295816-66295835 Msa0178860:three_prime_UTR 35.0%
! TTGATGGTTTCGATGAAGAT+CGG + chr1_4:66296012-66296031 None:intergenic 35.0%
TGAATTTACTGGAAAAGGAG+CGG - chr1_4:66296192-66296211 Msa0178860:CDS 35.0%
TCTAGATCATTCTTCGAGAT+TGG - chr1_4:66296300-66296319 Msa0178860:intron 35.0%
TGTTGTGAGAACTATTGCTA+TGG - chr1_4:66296354-66296373 Msa0178860:intron 35.0%
TGATGTCAATCCTCGATAAA+TGG - chr1_4:66296681-66296700 Msa0178860:intron 35.0%
GATGTCAATCCTCGATAAAT+GGG - chr1_4:66296682-66296701 Msa0178860:intron 35.0%
ATGTCAATCCTCGATAAATG+GGG - chr1_4:66296683-66296702 Msa0178860:intron 35.0%
TAAAAAGACCCCATTTATCG+AGG + chr1_4:66296694-66296713 None:intergenic 35.0%
ATAAATTGCCCAAACCAAAC+AGG + chr1_4:66296723-66296742 None:intergenic 35.0%
GAAAGTCAAATTGGAGCAAA+TGG + chr1_4:66296923-66296942 None:intergenic 35.0%
!! GCTCCAATTTGACTTTCTTT+TGG - chr1_4:66296926-66296945 Msa0178860:CDS 35.0%
AACATTCATGATACGTCCAA+GGG + chr1_4:66297110-66297129 None:intergenic 35.0%
TAACATTCATGATACGTCCA+AGG + chr1_4:66297111-66297130 None:intergenic 35.0%
GGACGTATCATGAATGTTAT+TGG - chr1_4:66297112-66297131 Msa0178860:intron 35.0%
AATTCGCCTTTATGATCGAT+AGG + chr1_4:66297142-66297161 None:intergenic 35.0%
TCATCAGTCGAAAATCACTA+TGG + chr1_4:66297228-66297247 None:intergenic 35.0%
GATCCTTGTTACTGGTATTA+AGG - chr1_4:66297337-66297356 Msa0178860:CDS 35.0%
! AAGCGCTAAAGCATTAAGTT+AGG + chr1_4:66297580-66297599 None:intergenic 35.0%
GCTGAGTGTTTCCATATAAT+AGG - chr1_4:66297639-66297658 Msa0178860:intron 35.0%
GAGTGTTTCCATATAATAGG+TGG - chr1_4:66297642-66297661 Msa0178860:intron 35.0%
CAGAGAAACCACCTATTATA+TGG + chr1_4:66297653-66297672 None:intergenic 35.0%
TACAGAGAAATGATTGAGAG+TGG - chr1_4:66297717-66297736 Msa0178860:intron 35.0%
GAACACATGTTCTTTGTGTT+TGG - chr1_4:66298172-66298191 Msa0178860:intron 35.0%
GTGCAAAAAGCAAGTAGAAA+AGG + chr1_4:66298303-66298322 None:intergenic 35.0%
TCAAATGCAGATGAACCAAT+AGG + chr1_4:66298504-66298523 None:intergenic 35.0%
! AAATCCACGGTTTTCTTTTG+CGG - chr1_4:66298537-66298556 Msa0178860:intron 35.0%
CTTAATTTCAGGCAACAGTT+GGG + chr1_4:66298677-66298696 None:intergenic 35.0%
ACTTAATTTCAGGCAACAGT+TGG + chr1_4:66298678-66298697 None:intergenic 35.0%
!! GCTAATAACTTGCGTGTTTT+AGG + chr1_4:66298804-66298823 None:intergenic 35.0%
GTTATTAGCTCGATAGAATC+AGG - chr1_4:66298815-66298834 Msa0178860:intron 35.0%
TAAACACAAGCAGTTCGATT+TGG - chr1_4:66298984-66299003 Msa0178860:intron 35.0%
!! TGTTCATGGTTTGGTTAGTA+TGG + chr1_4:66299047-66299066 None:intergenic 35.0%
ATGATGCCTGATGTAATTGT+AGG - chr1_4:66299158-66299177 Msa0178860:intron 35.0%
! AGTTAGCCTACAATTACATC+AGG + chr1_4:66299167-66299186 None:intergenic 35.0%
ATACGAGATGTTGAATCCAA+TGG + chr1_4:66299552-66299571 None:intergenic 35.0%
! TATCATTGCTATTCTGGGAA+TGG - chr1_4:66299659-66299678 Msa0178860:intron 35.0%
TCAACTCAACATATTTGCCT+GGG + chr1_4:66299785-66299804 None:intergenic 35.0%
TTCAACTCAACATATTTGCC+TGG + chr1_4:66299786-66299805 None:intergenic 35.0%
!! AGGCAAATATGTTGAGTTGA+AGG - chr1_4:66299785-66299804 Msa0178860:intron 35.0%
! ATTAGTTGTTGTTCCAAGCA+TGG - chr1_4:66299889-66299908 Msa0178860:intron 35.0%
!!! CGATACCTGTTAGTTTTGTT+TGG - chr1_4:66300000-66300019 Msa0178860:intron 35.0%
AGCTTCCAAACAAAACTAAC+AGG + chr1_4:66300008-66300027 None:intergenic 35.0%
!!! GTTTTTTCACTGGGTGAAAA+TGG - chr1_4:66300105-66300124 Msa0178860:intron 35.0%
! TATAAAATGCCTGCTCTGAA+AGG + chr1_4:66300419-66300438 None:intergenic 35.0%
! TTCAGAGCAGGCATTTTATA+TGG - chr1_4:66300419-66300438 Msa0178860:CDS 35.0%
TATCGATGAAGTCATTGCAA+AGG - chr1_4:66300449-66300468 Msa0178860:CDS 35.0%
CAACAAACACTCAGAATGAA+AGG + chr1_4:66300648-66300667 None:intergenic 35.0%
TAATAAGTGGAAGATGCAAG+AGG - chr1_4:66300728-66300747 Msa0178860:five_prime_UTR 35.0%
! TCTACTTGCTGAATTTGTGA+TGG - chr1_4:66300835-66300854 Msa0178860:five_prime_UTR 35.0%
AATGAAGATGCTAGGGTTTG+TGG + chr1_4:66295906-66295925 None:intergenic 40.0%
GAGAGAGAATGAAGATGCTA+GGG + chr1_4:66295913-66295932 None:intergenic 40.0%
AGAGAGAGAATGAAGATGCT+AGG + chr1_4:66295914-66295933 None:intergenic 40.0%
! ATCAGTAATTTTCCCACCTC+CGG + chr1_4:66296173-66296192 None:intergenic 40.0%
GGTCAAGTTTGTCAGGTTAT+TGG - chr1_4:66296217-66296236 Msa0178860:intron 40.0%
TTCAAATCTGACGTCAACGA+CGG + chr1_4:66296245-66296264 None:intergenic 40.0%
GTTGACGTCAGATTTGAAGA+AGG - chr1_4:66296247-66296266 Msa0178860:intron 40.0%
TCATTCTTCGAGATTGGTGT+TGG - chr1_4:66296306-66296325 Msa0178860:intron 40.0%
ATTGCTATGGATGCTACTGA+AGG - chr1_4:66296367-66296386 Msa0178860:intron 40.0%
! TCTTTTTAATGGCGCCTGTT+TGG - chr1_4:66296706-66296725 Msa0178860:intron 40.0%
! TATTGCATTTAGGTTCCCGT+TGG - chr1_4:66297076-66297095 Msa0178860:intron 40.0%
GGAGAACCTATCGATCATAA+AGG - chr1_4:66297133-66297152 Msa0178860:intron 40.0%
GAACAACAGATCCTTGTTAC+TGG - chr1_4:66297329-66297348 Msa0178860:CDS 40.0%
GGAGGAAAGATTGGATTGTT+TGG - chr1_4:66297483-66297502 Msa0178860:intron 40.0%
GGAAAGATTGGATTGTTTGG+TGG - chr1_4:66297486-66297505 Msa0178860:intron 40.0%
AACAATGTTGCTAAGGCTCA+TGG - chr1_4:66297549-66297568 Msa0178860:intron 40.0%
TGTACAAGTCATTACCCTCA+CGG + chr1_4:66297701-66297720 None:intergenic 40.0%
AGCAAATGTGCTCTTGTGTA+TGG - chr1_4:66297866-66297885 Msa0178860:intron 40.0%
TGGTGCTTACTTGAGTAAAG+CGG + chr1_4:66298009-66298028 None:intergenic 40.0%
CAGTTCAATAGCACACAGTT+CGG + chr1_4:66298126-66298145 None:intergenic 40.0%
! ACTGTGTGCTATTGAACTGT+TGG - chr1_4:66298127-66298146 Msa0178860:intron 40.0%
GCAAGTTTCAGACACAAACA+CGG + chr1_4:66298232-66298251 None:intergenic 40.0%
! GCAGTTTGTCCTTTTGCATA+TGG + chr1_4:66298635-66298654 None:intergenic 40.0%
! TAGGGAAGCATAAGAACTAC+TGG - chr1_4:66298926-66298945 Msa0178860:intron 40.0%
!! CAAGCAGTTCGATTTGGTTA+AGG - chr1_4:66298990-66299009 Msa0178860:intron 40.0%
CATTACGGTTGTTCATGGTT+TGG + chr1_4:66299056-66299075 None:intergenic 40.0%
CCAAACATTACGGTTGTTCA+TGG + chr1_4:66299061-66299080 None:intergenic 40.0%
CCATGAACAACCGTAATGTT+TGG - chr1_4:66299058-66299077 Msa0178860:CDS 40.0%
GTAATTGTAGGCTAACTCAG+AGG - chr1_4:66299170-66299189 Msa0178860:intron 40.0%
GATCAGTAGACAATGTTGGT+TGG + chr1_4:66299236-66299255 None:intergenic 40.0%
CCAAGATCAGTAGACAATGT+TGG + chr1_4:66299240-66299259 None:intergenic 40.0%
CCAACATTGTCTACTGATCT+TGG - chr1_4:66299237-66299256 Msa0178860:intron 40.0%
ACATTGTCTACTGATCTTGG+AGG - chr1_4:66299240-66299259 Msa0178860:intron 40.0%
CGTATTACAACCACCAAGAA+GGG - chr1_4:66299273-66299292 Msa0178860:CDS 40.0%
AGAGGTAATTGAACCCTTCT+TGG + chr1_4:66299289-66299308 None:intergenic 40.0%
CACATATATAGCTTGGACAG+AGG + chr1_4:66299307-66299326 None:intergenic 40.0%
TACAACAGTGTTGTCTAGAC+AGG - chr1_4:66299383-66299402 Msa0178860:intron 40.0%
TGCTCATCACCCAAAATAAG+TGG + chr1_4:66299582-66299601 None:intergenic 40.0%
CAACTCAACATATTTGCCTG+GGG + chr1_4:66299784-66299803 None:intergenic 40.0%
AGACAATAAACCACAAGGCA+AGG + chr1_4:66299921-66299940 None:intergenic 40.0%
GAATTGCATCGTACTCGAAA+TGG - chr1_4:66300052-66300071 Msa0178860:intron 40.0%
TCTATCTGATATGGACCTCT+TGG - chr1_4:66300083-66300102 Msa0178860:intron 40.0%
!!! GACCTCTTGGTTTTTTCACT+GGG - chr1_4:66300096-66300115 Msa0178860:intron 40.0%
AAATGGATCTCTCTTTGTGC+TGG - chr1_4:66300122-66300141 Msa0178860:intron 40.0%
GTATAACTTACAGGGTGTGT+TGG - chr1_4:66300377-66300396 Msa0178860:CDS 40.0%
ATATGATGACCTTTCAGAGC+AGG - chr1_4:66300407-66300426 Msa0178860:CDS 40.0%
! GAGCAGGCATTTTATATGGT+CGG - chr1_4:66300423-66300442 Msa0178860:CDS 40.0%
TAAAGGACAAAATGAGGGGA+GGG + chr1_4:66300526-66300545 None:intergenic 40.0%
ATAAAGGACAAAATGAGGGG+AGG + chr1_4:66300527-66300546 None:intergenic 40.0%
CATCTTCGATGAGAGAGAGA+GGG + chr1_4:66295945-66295964 None:intergenic 45.0%
TTTCGATGAAGATCGGCGAA+GGG + chr1_4:66296005-66296024 None:intergenic 45.0%
GATGTTGAGGCAGTGATTGA+TGG + chr1_4:66296028-66296047 None:intergenic 45.0%
ATAAGGTGAAGCGCGAGATT+GGG + chr1_4:66296062-66296081 None:intergenic 45.0%
CGGTTTAAGAGGTAGCCATA+AGG + chr1_4:66296079-66296098 None:intergenic 45.0%
! TCAGTAATTTTCCCACCTCC+GGG + chr1_4:66296172-66296191 None:intergenic 45.0%
TTTACTGGAAAAGGAGCGGT+CGG - chr1_4:66296196-66296215 Msa0178860:intron 45.0%
ACCTCAAGAGCAGTCAAGAT+CGG + chr1_4:66296280-66296299 None:intergenic 45.0%
!! TTCGAGATTGGTGTTGGAAG+TGG - chr1_4:66296312-66296331 Msa0178860:intron 45.0%
TTGGAAGTGGCTCAGCATTT+GGG - chr1_4:66296325-66296344 Msa0178860:intron 45.0%
TGTTGAGAACTCTCCATCCA+CGG + chr1_4:66296399-66296418 None:intergenic 45.0%
TTAATGGCGCCTGTTTGGTT+TGG - chr1_4:66296711-66296730 Msa0178860:intron 45.0%
! TAATGGCGCCTGTTTGGTTT+GGG - chr1_4:66296712-66296731 Msa0178860:intron 45.0%
CAGAGTAACACAGACACATG+TGG + chr1_4:66296849-66296868 None:intergenic 45.0%
GGACTTGAATCTTGCAAGCA+CGG - chr1_4:66296947-66296966 Msa0178860:CDS 45.0%
! AGCACGGATTTTCCTGCTAT+TGG - chr1_4:66296963-66296982 Msa0178860:CDS 45.0%
GCAGGAGCTTCTCTATGAAT+AGG + chr1_4:66297290-66297309 None:intergenic 45.0%
GTTGCTTGCTCAACAAAAGC+AGG + chr1_4:66297308-66297327 None:intergenic 45.0%
ATCTTTCCTCCCCTTTGGTA+TGG + chr1_4:66297474-66297493 None:intergenic 45.0%
TACCAAAGGGGAGGAAAGAT+TGG - chr1_4:66297474-66297493 Msa0178860:intron 45.0%
ATCCAATCTTTCCTCCCCTT+TGG + chr1_4:66297479-66297498 None:intergenic 45.0%
!! ATTGGATTGTTTGGTGGTGC+TGG - chr1_4:66297492-66297511 Msa0178860:intron 45.0%
!! TGGTGCTGGTGTAGGAAAAA+CGG - chr1_4:66297506-66297525 Msa0178860:intron 45.0%
! TTCTCTGTGTTTGCTGGTGT+TGG - chr1_4:66297666-66297685 Msa0178860:intron 45.0%
GTACAAGTCATTACCCTCAC+GGG + chr1_4:66297700-66297719 None:intergenic 45.0%
!! TGAGAGTGGTGTCATTAAGC+TGG - chr1_4:66297731-66297750 Msa0178860:intron 45.0%
!! GAGAGTGGTGTCATTAAGCT+GGG - chr1_4:66297732-66297751 Msa0178860:intron 45.0%
CATTAAGCTGGGTGAAAAGC+AGG - chr1_4:66297743-66297762 Msa0178860:intron 45.0%
TAAGTCCAGTAAGACCGACA+CGG + chr1_4:66297922-66297941 None:intergenic 45.0%
CATCTTGTCCTTCAGCATCA+CGG + chr1_4:66297961-66297980 None:intergenic 45.0%
CAATAGCACACAGTTCGGTT+TGG + chr1_4:66298121-66298140 None:intergenic 45.0%
!! TCACACACAGTTTGCTGCAA+TGG - chr1_4:66298755-66298774 Msa0178860:intron 45.0%
AGATGGAATACGACCAAGCA+GGG + chr1_4:66299202-66299221 None:intergenic 45.0%
GCGTATTACAACCACCAAGA+AGG - chr1_4:66299272-66299291 Msa0178860:CDS 45.0%
GGTAATTGAACCCTTCTTGG+TGG + chr1_4:66299286-66299305 None:intergenic 45.0%
CAGCAGGCACATATATAGCT+TGG + chr1_4:66299314-66299333 None:intergenic 45.0%
GGATCTGTCAAATCATCAGC+AGG + chr1_4:66299330-66299349 None:intergenic 45.0%
TGTAGCATCCAAGTGAGCAA+AGG + chr1_4:66299367-66299386 None:intergenic 45.0%
CTATCCTGCTGTTGATCCAT+TGG - chr1_4:66299533-66299552 Msa0178860:intron 45.0%
GAATCCAATGGATCAACAGC+AGG + chr1_4:66299540-66299559 None:intergenic 45.0%
GGAGAACACTCAAAGTTTCC+AGG - chr1_4:66299806-66299825 Msa0178860:intron 45.0%
ATGGAAGAAACCTTGCCTTG+TGG - chr1_4:66299908-66299927 Msa0178860:intron 45.0%
!!! GGACCTCTTGGTTTTTTCAC+TGG - chr1_4:66300095-66300114 Msa0178860:intron 45.0%
CACCCAGTGAAAAAACCAAG+AGG + chr1_4:66300101-66300120 None:intergenic 45.0%
TTGTGCTGGACCTATTCCTT+AGG - chr1_4:66300136-66300155 Msa0178860:intron 45.0%
GTCATCTGTGAACTAGTGCA+TGG - chr1_4:66300335-66300354 Msa0178860:CDS 45.0%
AACTTACAGGGTGTGTTGGA+TGG - chr1_4:66300381-66300400 Msa0178860:CDS 45.0%
! CAGGCATTTTATATGGTCGG+TGG - chr1_4:66300426-66300445 Msa0178860:CDS 45.0%
AAAGGCAGAGAAGATTGCCA+AGG - chr1_4:66300467-66300486 Msa0178860:CDS 45.0%
!! TGAAGATGCTGCTGATTCCT+TGG + chr1_4:66300487-66300506 None:intergenic 45.0%
! TTCTGAGTGTTTGTTGCCGA+CGG - chr1_4:66300652-66300671 Msa0178860:five_prime_UTR 45.0%
AACTTGGTACATCTCACCGT+CGG + chr1_4:66300671-66300690 None:intergenic 45.0%
GTGAGATGTACCAAGTTCTG+TGG - chr1_4:66300674-66300693 Msa0178860:five_prime_UTR 45.0%
!!! TTAAAGATTTAATTTATTTT+TGG + chr1_4:66298348-66298367 None:intergenic 5.0%
!!! ATAATTAAATTAAATTTTGT+TGG - chr1_4:66298388-66298407 Msa0178860:intron 5.0%
ATGAGAGAGAGAGGGAGAGA+GGG + chr1_4:66295937-66295956 None:intergenic 50.0%
CCATCTTCGATGAGAGAGAG+AGG + chr1_4:66295946-66295965 None:intergenic 50.0%
CCTCTCTCTCTCATCGAAGA+TGG - chr1_4:66295943-66295962 Msa0178860:intron 50.0%
GAAGATGGCTTCACGCAGAT+TGG - chr1_4:66295958-66295977 Msa0178860:three_prime_UTR 50.0%
GTTTCGATGAAGATCGGCGA+AGG + chr1_4:66296006-66296025 None:intergenic 50.0%
CAATCACTGCCTCAACATCG+AGG - chr1_4:66296029-66296048 Msa0178860:intron 50.0%
CATAAGGTGAAGCGCGAGAT+TGG + chr1_4:66296063-66296082 None:intergenic 50.0%
CAATCTCGCGCTTCACCTTA+TGG - chr1_4:66296061-66296080 Msa0178860:three_prime_UTR 50.0%
AGTCAGCAACGCGGTTTAAG+AGG + chr1_4:66296090-66296109 None:intergenic 50.0%
TCAAGAGCAGTCAAGATCGG+AGG + chr1_4:66296277-66296296 None:intergenic 50.0%
TCCGATCTTGACTGCTCTTG+AGG - chr1_4:66296276-66296295 Msa0178860:intron 50.0%
GTTGGAAGTGGCTCAGCATT+TGG - chr1_4:66296324-66296343 Msa0178860:intron 50.0%
GGATGGAGAGTTCTCAACAC+TGG - chr1_4:66296400-66296419 Msa0178860:intron 50.0%
! CATTTAGGTTCCCGTTGGCA+GGG - chr1_4:66297081-66297100 Msa0178860:intron 50.0%
ACCTGCTTGCACCATACCAA+AGG - chr1_4:66297460-66297479 Msa0178860:intron 50.0%
CCTGCTTGCACCATACCAAA+GGG - chr1_4:66297461-66297480 Msa0178860:intron 50.0%
CTGCTTGCACCATACCAAAG+GGG - chr1_4:66297462-66297481 Msa0178860:intron 50.0%
!! TTGTTTGGTGGTGCTGGTGT+AGG - chr1_4:66297498-66297517 Msa0178860:intron 50.0%
GGTGGTTTCTCTGTGTTTGC+TGG - chr1_4:66297660-66297679 Msa0178860:intron 50.0%
TGTTGGAGAAAGAACCCGTG+AGG - chr1_4:66297683-66297702 Msa0178860:intron 50.0%
GTTGGAGAAAGAACCCGTGA+GGG - chr1_4:66297684-66297703 Msa0178860:intron 50.0%
AAGTCCAGTAAGACCGACAC+GGG + chr1_4:66297921-66297940 None:intergenic 50.0%
GAGCATTTCCGTGATGCTGA+AGG - chr1_4:66297950-66297969 Msa0178860:intron 50.0%
GTAATTGGCAGCAGCAAGCT+TGG - chr1_4:66298194-66298213 Msa0178860:intron 50.0%
AAGGCCGCAAAAGAAAACCG+TGG + chr1_4:66298544-66298563 None:intergenic 50.0%
CAGATGGAATACGACCAAGC+AGG + chr1_4:66299203-66299222 None:intergenic 50.0%
GGTCGTATTCCATCTGCTGT+TGG - chr1_4:66299207-66299226 Msa0178860:intron 50.0%
!! GGTTGGTAACCAACAGCAGA+TGG + chr1_4:66299219-66299238 None:intergenic 50.0%
AAGTGAGCAAAGGTGGTAGC+AGG + chr1_4:66299357-66299376 None:intergenic 50.0%
TGCTACCACCTTTGCTCACT+TGG - chr1_4:66299356-66299375 Msa0178860:intron 50.0%
AGCATCCAAGTGAGCAAAGG+TGG + chr1_4:66299364-66299383 None:intergenic 50.0%
GTTGTACACCACGAGCAGTT+TGG + chr1_4:66299608-66299627 None:intergenic 50.0%
CTTAAGTCAGCCTTTCCACG+TGG - chr1_4:66299740-66299759 Msa0178860:intron 50.0%
AAGACTTCTGCCACGTGGAA+AGG + chr1_4:66299753-66299772 None:intergenic 50.0%
GGCAAGGTTTCTTCCATGCT+TGG + chr1_4:66299905-66299924 None:intergenic 50.0%
GGGTTTGTGGAGTGAGAGAG+TGG + chr1_4:66295893-66295912 None:intergenic 55.0%
GATGAGAGAGAGAGGGAGAG+AGG + chr1_4:66295938-66295957 None:intergenic 55.0%
!! GGAGGTTAGCCTCGATGTTG+AGG + chr1_4:66296041-66296060 None:intergenic 55.0%
CGGTTGCATAGTCAGCAACG+CGG + chr1_4:66296099-66296118 None:intergenic 55.0%
AGCGGTCGGTCAAGTTTGTC+AGG - chr1_4:66296210-66296229 Msa0178860:intron 55.0%
GTGGCTCAGCATTTGGGTGA+AGG - chr1_4:66296331-66296350 Msa0178860:intron 55.0%
!! GCTACTGAAGGTGTTGTCCG+TGG - chr1_4:66296379-66296398 Msa0178860:intron 55.0%
!! CTGAAGGTGTTGTCCGTGGA+TGG - chr1_4:66296383-66296402 Msa0178860:intron 55.0%
! GCATTTAGGTTCCCGTTGGC+AGG - chr1_4:66297080-66297099 Msa0178860:intron 55.0%
CCCTTTGGTATGGTGCAAGC+AGG + chr1_4:66297464-66297483 None:intergenic 55.0%
CTTGCACCATACCAAAGGGG+AGG - chr1_4:66297465-66297484 Msa0178860:intron 55.0%
GAGCACTACCAAACTGCTCG+TGG - chr1_4:66299597-66299616 Msa0178860:intron 55.0%
CAGTGAAGACTTCTGCCACG+TGG + chr1_4:66299758-66299777 None:intergenic 55.0%
CACGTGGCAGAAGTCTTCAC+TGG - chr1_4:66299756-66299775 Msa0178860:intron 55.0%
GGGCAGTTGACCACAGAACT+TGG + chr1_4:66300687-66300706 None:intergenic 55.0%
AGGTGAAGCGCGAGATTGGG+AGG + chr1_4:66296059-66296078 None:intergenic 60.0%
AAGAAGGAGGTTCCCGGAGG+TGG - chr1_4:66296157-66296176 Msa0178860:CDS 60.0%
AGAAGGAGGTTCCCGGAGGT+GGG - chr1_4:66296158-66296177 Msa0178860:CDS 60.0%
TCCAAGGGTAGCCCTGCCAA+CGG + chr1_4:66297095-66297114 None:intergenic 60.0%
GGTCAGATGAATGAGCCCCC+TGG - chr1_4:66297887-66297906 Msa0178860:intron 60.0%
!! TCAGAGGTGTCTGCCCTGCT+TGG - chr1_4:66299186-66299205 Msa0178860:intron 60.0%
GCAAAGGTGGTAGCAGGAGC+AGG + chr1_4:66299351-66299370 None:intergenic 60.0%
GAAGTCTTCACTGGTGCCCC+AGG - chr1_4:66299765-66299784 Msa0178860:intron 60.0%
! TTCTTCGCCGGAGGCGCAGA+CGG + chr1_4:66296142-66296161 None:intergenic 65.0%
GGAACCTCCTTCTTCGCCGG+AGG + chr1_4:66296151-66296170 None:intergenic 65.0%
CCGGGAACCTCCTTCTTCGC+CGG + chr1_4:66296154-66296173 None:intergenic 65.0%
CCGGCGAAGAAGGAGGTTCC+CGG - chr1_4:66296151-66296170 Msa0178860:CDS 65.0%
GCGAAGAAGGAGGTTCCCGG+AGG - chr1_4:66296154-66296173 Msa0178860:CDS 65.0%
CCAAGGGTAGCCCTGCCAAC+GGG + chr1_4:66297094-66297113 None:intergenic 65.0%
! CGTGCCCGTGTCGGTCTTAC+TGG - chr1_4:66297914-66297933 Msa0178860:intron 65.0%
AGGCGCAGACGGAGCTGGTG+CGG + chr1_4:66296131-66296150 None:intergenic 70.0%
ACCAGCTCCGTCTGCGCCTC+CGG - chr1_4:66296132-66296151 Msa0178860:CDS 70.0%
GTCTGCGCCTCCGGCGAAGA+AGG - chr1_4:66296141-66296160 Msa0178860:CDS 70.0%
TGCGCCTCCGGCGAAGAAGG+AGG - chr1_4:66296144-66296163 Msa0178860:CDS 70.0%
CCCGTTGGCAGGGCTACCCT+TGG - chr1_4:66297091-66297110 Msa0178860:intron 70.0%
ACACGGGCACGAGCACCAGG+GGG + chr1_4:66297905-66297924 None:intergenic 70.0%
GACACGGGCACGAGCACCAG+GGG + chr1_4:66297906-66297925 None:intergenic 70.0%
CGACACGGGCACGAGCACCA+GGG + chr1_4:66297907-66297926 None:intergenic 70.0%
CCTGGTGCTCGTGCCCGTGT+CGG - chr1_4:66297905-66297924 Msa0178860:intron 70.0%
AGACGGAGCTGGTGCGGCGG+CGG + chr1_4:66296125-66296144 None:intergenic 75.0%
CGCAGACGGAGCTGGTGCGG+CGG + chr1_4:66296128-66296147 None:intergenic 75.0%
CCGACACGGGCACGAGCACC+AGG + chr1_4:66297908-66297927 None:intergenic 75.0%
! AGCTGGTGCGGCGGCGGCAG+CGG + chr1_4:66296119-66296138 None:intergenic 80.0%
!! GCCGGAGGCGCAGACGGAGC+TGG + chr1_4:66296136-66296155 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66295718 66300886 66295718 ID=Msa0178860;Name=Msa0178860
chr1_4 mRNA 66295718 66300886 66295718 ID=Msa0178860-mRNA-1;Parent=Msa0178860;Name=Msa0178860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=244|1|1|1|0.8|0.72|11|309|559
chr1_4 exon 66295718 66295919 66295718 ID=Msa0178860-mRNA-1:exon:21700;Parent=Msa0178860-mRNA-1
chr1_4 exon 66295945 66296007 66295945 ID=Msa0178860-mRNA-1:exon:21699;Parent=Msa0178860-mRNA-1
chr1_4 exon 66296048 66296214 66296048 ID=Msa0178860-mRNA-1:exon:21698;Parent=Msa0178860-mRNA-1
chr1_4 exon 66296777 66297088 66296777 ID=Msa0178860-mRNA-1:exon:21697;Parent=Msa0178860-mRNA-1
chr1_4 exon 66297200 66297424 66297200 ID=Msa0178860-mRNA-1:exon:21696;Parent=Msa0178860-mRNA-1
chr1_4 exon 66298586 66298744 66298586 ID=Msa0178860-mRNA-1:exon:21695;Parent=Msa0178860-mRNA-1
chr1_4 exon 66298840 66298943 66298840 ID=Msa0178860-mRNA-1:exon:21694;Parent=Msa0178860-mRNA-1
chr1_4 exon 66299034 66299151 66299034 ID=Msa0178860-mRNA-1:exon:21693;Parent=Msa0178860-mRNA-1
chr1_4 exon 66299246 66299334 66299246 ID=Msa0178860-mRNA-1:exon:21692;Parent=Msa0178860-mRNA-1
chr1_4 exon 66299441 66299516 66299441 ID=Msa0178860-mRNA-1:exon:21691;Parent=Msa0178860-mRNA-1
chr1_4 exon 66300169 66300886 66300169 ID=Msa0178860-mRNA-1:exon:21690;Parent=Msa0178860-mRNA-1
chr1_4 five_prime_UTR 66300643 66300886 66300643 ID=Msa0178860-mRNA-1:five_prime_utr;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66300169 66300642 66300169 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66299441 66299516 66299441 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66299246 66299334 66299246 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66299034 66299151 66299034 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66298840 66298943 66298840 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66298586 66298744 66298586 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66297200 66297424 66297200 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66296777 66297088 66296777 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 CDS 66296092 66296214 66296092 ID=Msa0178860-mRNA-1:cds;Parent=Msa0178860-mRNA-1
chr1_4 three_prime_UTR 66296048 66296091 66296048 ID=Msa0178860-mRNA-1:three_prime_utr;Parent=Msa0178860-mRNA-1
chr1_4 three_prime_UTR 66295945 66296007 66295945 ID=Msa0178860-mRNA-1:three_prime_utr;Parent=Msa0178860-mRNA-1
chr1_4 three_prime_UTR 66295718 66295919 66295718 ID=Msa0178860-mRNA-1:three_prime_utr;Parent=Msa0178860-mRNA-1
Gene Sequence

>Msa0178860

ATGGCTTCACGCAGATTGGTATCATCTCTGATTCGATCTTCCCTTCGCCGATCTTCATCGAAACCATCAATCACTGCCTCAACATCGAGGCTAACCTCCCAATCTCGCGCTTCACCTTATGGCTACCTCTTAAACCGCGTTGCTGACTATGCAACCGCTGCCGCCGCCGCACCAGCTCCGTCTGCGCCTCCGGCGAAGAAGGAGGTTCCCGGAGGTGGGAAAATTACTGATGAATTTACTGGAAAAGGAGCGGTCGGTCAAGTTTGTCAGGTTATTGGTGCCGTCGTTGACGTCAGATTTGAAGAAGGTTTGCCTCCGATCTTGACTGCTCTTGAGGTTCTAGATCATTCTTCGAGATTGGTGTTGGAAGTGGCTCAGCATTTGGGTGAAGGTGTTGTGAGAACTATTGCTATGGATGCTACTGAAGGTGTTGTCCGTGGATGGAGAGTTCTCAACACTGGTTCTCCCATCAGTGTTCCCGTTGGCAGGGCTACCCTTGGACGTATCATGAATGTTATTGGAGAACCTATCGATCATAAAGGCGAATTCAAAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAACAGATCCTTGTTACTGGTATTAAGGTTGTAGACCTGCTTGCACCATACCAAAGGGGAGGAAAGATTGGATTGTTTGGTGGTGCTGGTGTAGGAAAAACGGTTCTTATTATGGAACTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAAAGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTGGGTGAAAAGCAGAGTGAGAGCAAATGTGCTCTTGTGTATGGTCAGATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTCGGTCTTACTGGACTTACTGTTGCTGAGCATTTCCGTGATGCTGAAGGACAAGATGTGCTTCTTTTTGTTGACAACATTTTCCGCTTTACTCAAGCTAACTCAGAGGTGTCTGCCCTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATATATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTGTCTAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTTGATCCATTGGATTCAACATCTCGTATGCTTTCTCCACTTATTTTGGGTGATGAGCACTACCAAACTGCTCGTGGTGTACAACAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTCTGGGAATGGATGAGCTTAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAAATTCAACGATTCTTAAGTCAGCCTTTCCACGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAACACTCAAAGTTTCCAGGGTGTGTTGGATGGCAAATATGATGACCTTTCAGAGCAGGCATTTTATATGGTCGGTGGTATCGATGAAGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCAGCATCTTCATCTTAG
Protein sequence

>Msa0178860

MASRRLVSSLIRSSLRRSSSKPSITASTSRLTSQSRASPYGYLLNRVADYATAAAAAPAPSAPPAKKEVPGGGKITDEFTGKGAVGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRATLGRIMNVIGEPIDHKGEFKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDEHYQTARGVQQVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENTQSFQGVLDGKYDDLSEQAFYMVGGIDEVIAKAEKIAKESAASSS*