Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249180 | XP_024641431.2 | 81.937 | 382 | 23 | 2 | 10 | 345 | 274 | 655 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249180 | sp|Q9LJE5|ECT2_ARATH | 42.618 | 359 | 133 | 11 | 2 | 290 | 276 | 631 | 2.00e-68 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249180 | A0A396HC56 | 81.937 | 382 | 23 | 2 | 10 | 345 | 274 | 655 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa1249180 | 0.803370 | 3.600099e-49 | -8.615850e-47 |
| Msa0612960 | Msa1249180 | 0.808114 | 3.630525e-50 | -8.615850e-47 |
| Msa0740510 | Msa1249180 | 0.806397 | 8.392628e-50 | -8.615850e-47 |
| Msa0183050 | Msa1249180 | 0.806374 | 8.487045e-50 | -8.615850e-47 |
| Msa0220580 | Msa1249180 | 0.803049 | 4.196619e-49 | -8.615850e-47 |
| Msa0558230 | Msa1249180 | 0.804755 | 1.855238e-49 | -8.615850e-47 |
| Msa0869100 | Msa1249180 | 0.819635 | 1.047482e-52 | -8.615850e-47 |
| Msa0933230 | Msa1249180 | 0.800929 | 1.144490e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249180 | MtrunA17_Chr6g0461531 | 81.937 | 382 | 23 | 2 | 10 | 345 | 274 | 655 | 0.0 | 613 |
| Msa1249180 | MtrunA17_Chr7g0253191 | 54.331 | 381 | 114 | 9 | 7 | 334 | 285 | 658 | 2.66e-116 | 351 |
| Msa1249180 | MtrunA17_Chr8g0380431 | 54.460 | 213 | 84 | 7 | 23 | 226 | 288 | 496 | 6.42e-61 | 204 |
| Msa1249180 | MtrunA17_Chr4g0000071 | 38.519 | 270 | 86 | 6 | 63 | 275 | 319 | 565 | 7.22e-42 | 154 |
| Msa1249180 | MtrunA17_Chr4g0069011 | 37.050 | 278 | 100 | 7 | 49 | 271 | 245 | 502 | 7.44e-39 | 145 |
| Msa1249180 | MtrunA17_Chr2g0293641 | 37.255 | 255 | 99 | 6 | 67 | 271 | 293 | 536 | 1.29e-38 | 145 |
| Msa1249180 | MtrunA17_Chr2g0309651 | 36.992 | 246 | 79 | 5 | 85 | 274 | 322 | 547 | 1.47e-38 | 144 |
| Msa1249180 | MtrunA17_Chr2g0277111 | 39.572 | 187 | 63 | 2 | 136 | 272 | 267 | 453 | 2.45e-34 | 132 |
| Msa1249180 | MtrunA17_Chr8g0380421 | 66.667 | 48 | 16 | 0 | 230 | 277 | 3 | 50 | 9.64e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249180 | AT3G13460.2 | 42.618 | 359 | 133 | 11 | 2 | 290 | 273 | 628 | 1.75e-69 | 229 |
| Msa1249180 | AT3G13460.1 | 42.618 | 359 | 133 | 11 | 2 | 290 | 276 | 631 | 2.03e-69 | 229 |
| Msa1249180 | AT3G13460.4 | 42.618 | 359 | 133 | 11 | 2 | 290 | 275 | 630 | 2.04e-69 | 229 |
| Msa1249180 | AT5G61020.1 | 38.333 | 360 | 157 | 10 | 26 | 332 | 140 | 487 | 1.30e-59 | 199 |
| Msa1249180 | AT5G61020.2 | 38.333 | 360 | 157 | 10 | 26 | 332 | 138 | 485 | 1.40e-59 | 199 |
| Msa1249180 | AT1G55500.1 | 42.456 | 285 | 103 | 6 | 37 | 267 | 243 | 520 | 4.24e-59 | 199 |
| Msa1249180 | AT1G55500.6 | 42.456 | 285 | 103 | 6 | 37 | 267 | 256 | 533 | 5.09e-59 | 199 |
| Msa1249180 | AT1G55500.3 | 42.177 | 294 | 108 | 7 | 28 | 267 | 278 | 563 | 6.07e-59 | 200 |
| Msa1249180 | AT1G55500.4 | 42.456 | 285 | 103 | 6 | 37 | 267 | 299 | 576 | 6.93e-59 | 200 |
| Msa1249180 | AT1G55500.5 | 42.456 | 285 | 103 | 6 | 37 | 267 | 299 | 576 | 7.83e-59 | 200 |
| Msa1249180 | AT1G55500.2 | 42.456 | 285 | 103 | 6 | 37 | 267 | 299 | 576 | 7.93e-59 | 200 |
| Msa1249180 | AT3G03950.2 | 38.889 | 324 | 122 | 8 | 12 | 273 | 100 | 409 | 2.90e-55 | 186 |
| Msa1249180 | AT3G03950.1 | 38.889 | 324 | 122 | 8 | 12 | 273 | 101 | 410 | 3.70e-55 | 186 |
| Msa1249180 | AT3G03950.3 | 38.889 | 324 | 122 | 8 | 12 | 273 | 104 | 413 | 4.05e-55 | 186 |
| Msa1249180 | AT3G13060.3 | 36.637 | 333 | 135 | 8 | 15 | 275 | 218 | 546 | 9.49e-46 | 165 |
| Msa1249180 | AT3G13060.6 | 36.637 | 333 | 135 | 8 | 15 | 275 | 218 | 546 | 9.49e-46 | 165 |
| Msa1249180 | AT3G13060.2 | 36.637 | 333 | 135 | 8 | 15 | 275 | 240 | 568 | 1.15e-45 | 165 |
| Msa1249180 | AT3G13060.4 | 36.637 | 333 | 135 | 8 | 15 | 275 | 230 | 558 | 1.19e-45 | 165 |
| Msa1249180 | AT1G27960.3 | 38.247 | 251 | 83 | 6 | 69 | 273 | 200 | 424 | 4.59e-40 | 147 |
| Msa1249180 | AT1G27960.1 | 37.500 | 264 | 93 | 6 | 69 | 286 | 274 | 511 | 1.07e-39 | 147 |
| Msa1249180 | AT3G13460.3 | 44.196 | 224 | 102 | 7 | 2 | 205 | 276 | 496 | 3.67e-39 | 145 |
| Msa1249180 | AT3G17330.2 | 33.445 | 299 | 125 | 8 | 35 | 271 | 52 | 338 | 9.36e-39 | 144 |
| Msa1249180 | AT1G48110.2 | 35.361 | 263 | 106 | 7 | 59 | 271 | 243 | 491 | 5.20e-38 | 144 |
| Msa1249180 | AT1G48110.1 | 35.361 | 263 | 106 | 7 | 59 | 271 | 243 | 491 | 5.20e-38 | 144 |
| Msa1249180 | AT3G17330.1 | 33.445 | 299 | 125 | 8 | 35 | 271 | 154 | 440 | 6.41e-38 | 143 |
| Msa1249180 | AT3G17330.3 | 33.445 | 299 | 125 | 8 | 35 | 271 | 154 | 440 | 6.41e-38 | 143 |
| Msa1249180 | AT5G58190.2 | 35.102 | 245 | 92 | 5 | 91 | 278 | 275 | 509 | 1.49e-37 | 141 |
| Msa1249180 | AT5G58190.1 | 35.102 | 245 | 92 | 5 | 91 | 278 | 274 | 508 | 1.53e-37 | 141 |
| Msa1249180 | AT1G79270.1 | 41.799 | 189 | 60 | 2 | 133 | 271 | 303 | 491 | 3.46e-37 | 140 |
| Msa1249180 | AT1G79270.2 | 41.799 | 189 | 60 | 2 | 133 | 271 | 288 | 476 | 3.52e-37 | 140 |
| Msa1249180 | AT1G79270.4 | 41.799 | 189 | 60 | 2 | 133 | 271 | 288 | 476 | 3.52e-37 | 140 |
| Msa1249180 | AT1G79270.3 | 41.799 | 189 | 60 | 2 | 133 | 271 | 288 | 476 | 3.52e-37 | 140 |
| Msa1249180 | AT1G09810.2 | 38.889 | 216 | 62 | 5 | 128 | 293 | 174 | 369 | 3.20e-35 | 133 |
| Msa1249180 | AT1G09810.1 | 32.353 | 340 | 126 | 12 | 23 | 293 | 107 | 411 | 4.03e-35 | 134 |
| Msa1249180 | AT1G09810.3 | 35.379 | 277 | 85 | 9 | 78 | 293 | 149 | 392 | 4.91e-35 | 133 |
| Msa1249180 | AT3G13060.1 | 38.655 | 238 | 116 | 7 | 15 | 226 | 240 | 473 | 7.97e-33 | 128 |
| Msa1249180 | AT3G13060.5 | 36.406 | 217 | 108 | 7 | 15 | 205 | 240 | 452 | 2.49e-22 | 97.8 |
| Msa1249180 | AT1G27960.2 | 41.176 | 136 | 55 | 2 | 77 | 212 | 281 | 391 | 7.43e-22 | 96.3 |
Find 80 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTATGTGTTTCCATAT+TGG | 0.246769 | 8_2:-43693731 | None:intergenic |
| TCTGGACTGGGACCGTATTC+TGG | 0.259091 | 8_2:+43693669 | Msa1249180:CDS |
| TCCCCTGTCCCTGCGGCATC+TGG | 0.278055 | 8_2:-43694957 | None:intergenic |
| TCTAACTATGGATCTACTTA+TGG | 0.286333 | 8_2:+43693759 | Msa1249180:CDS |
| CTAGCTTCTTGTTTCCATTA+GGG | 0.296428 | 8_2:-43694136 | None:intergenic |
| TCTAGCTTCTTGTTTCCATT+AGG | 0.306157 | 8_2:-43694137 | None:intergenic |
| GAAGCTAGATGCGGCATATC+AGG | 0.346860 | 8_2:+43694151 | Msa1249180:CDS |
| CCGTATTCTGGATATCCTAA+TGG | 0.351387 | 8_2:+43693681 | Msa1249180:CDS |
| TCTAATAGTTGCTGCATCAT+TGG | 0.353208 | 8_2:-43694880 | None:intergenic |
| CCGGTGTATTGTTGCTTGTC+AGG | 0.354452 | 8_2:-43694008 | None:intergenic |
| ATCAAGCAAAACATGCATTC+TGG | 0.363160 | 8_2:+43694635 | Msa1249180:CDS |
| AACATGATGTACAGCCAATA+TGG | 0.363852 | 8_2:+43693717 | Msa1249180:CDS |
| GTGTGGACAATTACCCCTAA+TGG | 0.372153 | 8_2:+43694122 | Msa1249180:CDS |
| GTTATCATAGGAACCTGTTC+TGG | 0.374797 | 8_2:-43693784 | None:intergenic |
| TTATCATCATCACTCTTGAT+AGG | 0.378740 | 8_2:-43693969 | None:intergenic |
| TCTCAGCTAAACCAACAAAT+TGG | 0.380241 | 8_2:-43694330 | None:intergenic |
| GTTCCAGATGCCGCAGGGAC+AGG | 0.382741 | 8_2:+43694954 | Msa1249180:CDS |
| TTGCTTGGGTACATCCCATT+AGG | 0.388741 | 8_2:-43693696 | None:intergenic |
| AAGGTTCCATCCTGAGATTT+CGG | 0.391126 | 8_2:-43694915 | None:intergenic |
| AATACTAGTGGCCAATTTGT+TGG | 0.428966 | 8_2:+43694319 | Msa1249180:CDS |
| GGCTGTACATCATGTTGCTT+GGG | 0.429557 | 8_2:-43693710 | None:intergenic |
| TATTGTTGCTTGTCAGGAAC+TGG | 0.431545 | 8_2:-43694002 | None:intergenic |
| AAAAGAAATGCGGATGGCTT+TGG | 0.440356 | 8_2:+43693849 | Msa1249180:CDS |
| TACAGAGGCAGGTCTAACTA+TGG | 0.441046 | 8_2:+43693747 | Msa1249180:CDS |
| CGTATTCTGGATATCCTAAT+GGG | 0.442464 | 8_2:+43693682 | Msa1249180:CDS |
| CTATGCAAGTTCTGCAACCT+AGG | 0.447151 | 8_2:-43693639 | None:intergenic |
| TCACCTCAACTATTGTTCCT+AGG | 0.449096 | 8_2:+43693622 | Msa1249180:CDS |
| CCTGTCCTGTCAAAATCAAC+CGG | 0.470695 | 8_2:-43694361 | None:intergenic |
| TGATGTATTGCCGAAATCTC+AGG | 0.471132 | 8_2:+43694905 | Msa1249180:CDS |
| TTCCAGATGCCGCAGGGACA+GGG | 0.474023 | 8_2:+43694955 | Msa1249180:CDS |
| GGATCTATACTTGTTATCAT+AGG | 0.478586 | 8_2:-43693796 | None:intergenic |
| TCTACTTATGGATCCAGAAC+AGG | 0.481498 | 8_2:+43693771 | Msa1249180:CDS |
| GCATAGCTATTCATCTGGAC+TGG | 0.486362 | 8_2:+43693656 | Msa1249180:CDS |
| AACTTGCATAGCTATTCATC+TGG | 0.490277 | 8_2:+43693651 | Msa1249180:CDS |
| CACATTATTACTCAAGGGTC+AGG | 0.490934 | 8_2:+43693941 | Msa1249180:CDS |
| CATAGCTATTCATCTGGACT+GGG | 0.492140 | 8_2:+43693657 | Msa1249180:CDS |
| CCATTAGGATATCCAGAATA+CGG | 0.504485 | 8_2:-43693681 | None:intergenic |
| TGGCTGTACATCATGTTGCT+TGG | 0.512871 | 8_2:-43693711 | None:intergenic |
| ACCTGTCACATTATTACTCA+AGG | 0.514931 | 8_2:+43693935 | Msa1249180:CDS |
| AAGTATAGATCCACACGCTA+TGG | 0.515371 | 8_2:+43693807 | Msa1249180:CDS |
| TAGCTTCTTGTTTCCATTAG+GGG | 0.516283 | 8_2:-43694135 | None:intergenic |
| ATTTGTTGGTTTAGCTGAGA+TGG | 0.517129 | 8_2:+43694333 | Msa1249180:CDS |
| CCCTTGAGTAATAATGTGAC+AGG | 0.522853 | 8_2:-43693936 | None:intergenic |
| CATCATCACTCTTGATAGGA+AGG | 0.537515 | 8_2:-43693965 | None:intergenic |
| TTTAGCTGAGATGGTGAGTC+CGG | 0.541233 | 8_2:+43694342 | Msa1249180:CDS |
| GAGTCTGCAGGCGGTTCAGT+AGG | 0.544826 | 8_2:-43695011 | None:intergenic |
| TCAGTTGTTCCAGATGCCGC+AGG | 0.545063 | 8_2:+43694948 | Msa1249180:CDS |
| ATGGAAACACATACAGAGGC+AGG | 0.547380 | 8_2:+43693736 | Msa1249180:CDS |
| AAAGTCAGCAGACTTCTCCT+TGG | 0.553878 | 8_2:-43694177 | None:intergenic |
| TCCAGATGCCGCAGGGACAG+GGG | 0.557769 | 8_2:+43694956 | Msa1249180:CDS |
| TTGTTACAGGTCAATACTAG+TGG | 0.563135 | 8_2:+43694307 | Msa1249180:intron |
| CTGACAAGCAACAATACACC+GGG | 0.567636 | 8_2:+43694009 | Msa1249180:CDS |
| TGGCTTTGGTGAGCTGAACA+AGG | 0.569778 | 8_2:+43693863 | Msa1249180:CDS |
| AGATCCACACGCTATGGAAG+TGG | 0.570041 | 8_2:+43693813 | Msa1249180:CDS |
| TGTGCAGGTCAAGTTTGAGA+AGG | 0.582943 | 8_2:+43694581 | Msa1249180:intron |
| GGCGGTTCAGTAGGTGAAGT+AGG | 0.583021 | 8_2:-43695002 | None:intergenic |
| GAAATCTCAGGATGGAACCT+TGG | 0.585908 | 8_2:+43694917 | Msa1249180:CDS |
| GTGCAGGTCAAGTTTGAGAA+GGG | 0.589183 | 8_2:+43694582 | Msa1249180:intron |
| ATTCTCAGATAAATATTCCC+CGG | 0.609728 | 8_2:-43694027 | None:intergenic |
| TGTCATCAAATCTTATAGCG+AGG | 0.611587 | 8_2:+43694070 | Msa1249180:CDS |
| AGAGTATGAAATATAATGTG+TGG | 0.612407 | 8_2:+43694105 | Msa1249180:CDS |
| TCAGAACTATTGGAACCTCT+CGG | 0.617068 | 8_2:-43693888 | None:intergenic |
| TGCGGCATATCAGGAAGCCA+AGG | 0.621638 | 8_2:+43694160 | Msa1249180:CDS |
| TGACCATGTCAAAAGAAATG+CGG | 0.632759 | 8_2:+43693839 | Msa1249180:CDS |
| GAGAAGCTTGTAGAAGCGAA+TGG | 0.634854 | 8_2:+43694978 | Msa1249180:CDS |
| CATGTCAAAAGAAATGCGGA+TGG | 0.642677 | 8_2:+43693843 | Msa1249180:CDS |
| AAAACCACTTCCATAGCGTG+TGG | 0.643915 | 8_2:-43693817 | None:intergenic |
| CCTGACAAGCAACAATACAC+CGG | 0.643940 | 8_2:+43694008 | Msa1249180:CDS |
| CCTGTCACATTATTACTCAA+GGG | 0.647177 | 8_2:+43693936 | Msa1249180:CDS |
| CAACCTAGGAACAATAGTTG+AGG | 0.650486 | 8_2:-43693625 | None:intergenic |
| GGCTTTGGTGAGCTGAACAA+GGG | 0.653383 | 8_2:+43693864 | Msa1249180:CDS |
| CTGTTCGAAGAGTCTGCAGG+CGG | 0.658211 | 8_2:-43695020 | None:intergenic |
| AACAACTGATTCATTCACCA+AGG | 0.671415 | 8_2:-43694934 | None:intergenic |
| CAGTTGTTCCAGATGCCGCA+GGG | 0.680223 | 8_2:+43694949 | Msa1249180:CDS |
| CAATATGGAAACACATACAG+AGG | 0.684546 | 8_2:+43693732 | Msa1249180:CDS |
| GAGCTGAACAAGGGACCGAG+AGG | 0.693881 | 8_2:+43693873 | Msa1249180:CDS |
| TGGAAACAAGAAGCTAGATG+CGG | 0.695396 | 8_2:+43694142 | Msa1249180:CDS |
| AAGCTTCTCCCCTGTCCCTG+CGG | 0.711260 | 8_2:-43694964 | None:intergenic |
| GTATTGCCGAAATCTCAGGA+TGG | 0.724057 | 8_2:+43694909 | Msa1249180:CDS |
| TGACAAGCAACAATACACCG+GGG | 0.815980 | 8_2:+43694010 | Msa1249180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATCATCAGAACTAT+TGG | - | chr8_2:43693901-43693920 | None:intergenic | 20.0% |
| !! | TGGTAAAACAGATAAAATAT+AGG | - | chr8_2:43694262-43694281 | None:intergenic | 20.0% |
| !!! | TATATTTTATCTGTTTTACC+AGG | + | chr8_2:43694261-43694280 | Msa1249180:intron | 20.0% |
| !!! | TGAAATTCTCAAAATTTTCA+AGG | + | chr8_2:43694608-43694627 | Msa1249180:CDS | 20.0% |
| !! | AATGAAATGAGTAATTGTAA+AGG | - | chr8_2:43694745-43694764 | None:intergenic | 20.0% |
| !!! | ATTTTTATCATCAGAACTAT+TGG | - | chr8_2:43693901-43693920 | None:intergenic | 20.0% |
| !! | TGGTAAAACAGATAAAATAT+AGG | - | chr8_2:43694262-43694281 | None:intergenic | 20.0% |
| !!! | TATATTTTATCTGTTTTACC+AGG | + | chr8_2:43694261-43694280 | Msa1249180:intron | 20.0% |
| !!! | TGAAATTCTCAAAATTTTCA+AGG | + | chr8_2:43694608-43694627 | Msa1249180:CDS | 20.0% |
| !! | AATGAAATGAGTAATTGTAA+AGG | - | chr8_2:43694745-43694764 | None:intergenic | 20.0% |
| ! | GATAAAAATGACAAAAGTCT+TGG | + | chr8_2:43693912-43693931 | Msa1249180:CDS | 25.0% |
| ! | AGAGTATGAAATATAATGTG+TGG | + | chr8_2:43694105-43694124 | Msa1249180:CDS | 25.0% |
| !!! | TCCCATATTTTTGCTATTTT+CGG | + | chr8_2:43694199-43694218 | Msa1249180:CDS | 25.0% |
| ! | ACCGAAAATAGCAAAAATAT+GGG | - | chr8_2:43694203-43694222 | None:intergenic | 25.0% |
| ! | TAGTAATCCTCAATTAAGAT+GGG | - | chr8_2:43694776-43694795 | None:intergenic | 25.0% |
| ! | TTAGTAATCCTCAATTAAGA+TGG | - | chr8_2:43694777-43694796 | None:intergenic | 25.0% |
| !! | CTTTAATTGAACAAGGTATT+TGG | - | chr8_2:43694850-43694869 | None:intergenic | 25.0% |
| ! | CAAATACCTTGTTCAATTAA+AGG | + | chr8_2:43694848-43694867 | Msa1249180:intron | 25.0% |
| ! | GATAAAAATGACAAAAGTCT+TGG | + | chr8_2:43693912-43693931 | Msa1249180:CDS | 25.0% |
| ! | AGAGTATGAAATATAATGTG+TGG | + | chr8_2:43694105-43694124 | Msa1249180:CDS | 25.0% |
| !!! | TCCCATATTTTTGCTATTTT+CGG | + | chr8_2:43694199-43694218 | Msa1249180:CDS | 25.0% |
| ! | ACCGAAAATAGCAAAAATAT+GGG | - | chr8_2:43694203-43694222 | None:intergenic | 25.0% |
| ! | TAGTAATCCTCAATTAAGAT+GGG | - | chr8_2:43694776-43694795 | None:intergenic | 25.0% |
| ! | TTAGTAATCCTCAATTAAGA+TGG | - | chr8_2:43694777-43694796 | None:intergenic | 25.0% |
| !! | CTTTAATTGAACAAGGTATT+TGG | - | chr8_2:43694850-43694869 | None:intergenic | 25.0% |
| ! | CAAATACCTTGTTCAATTAA+AGG | + | chr8_2:43694848-43694867 | Msa1249180:intron | 25.0% |
| TCTAACTATGGATCTACTTA+TGG | + | chr8_2:43693759-43693778 | Msa1249180:CDS | 30.0% | |
| !! | GGATCTATACTTGTTATCAT+AGG | - | chr8_2:43693799-43693818 | None:intergenic | 30.0% |
| TTATCATCATCACTCTTGAT+AGG | - | chr8_2:43693972-43693991 | None:intergenic | 30.0% | |
| ATTCTCAGATAAATATTCCC+CGG | - | chr8_2:43694030-43694049 | None:intergenic | 30.0% | |
| CACCGAAAATAGCAAAAATA+TGG | - | chr8_2:43694204-43694223 | None:intergenic | 30.0% | |
| TGTGTCTCAAGACATTATTT+GGG | - | chr8_2:43694431-43694450 | None:intergenic | 30.0% | |
| ATGTGTCTCAAGACATTATT+TGG | - | chr8_2:43694432-43694451 | None:intergenic | 30.0% | |
| AAACCTGTTACAAAACAGTA+GGG | + | chr8_2:43694474-43694493 | Msa1249180:intron | 30.0% | |
| ATTTCAACCCATCTTAATTG+AGG | + | chr8_2:43694766-43694785 | Msa1249180:intron | 30.0% | |
| TGTTGACCTTTAATTGAACA+AGG | - | chr8_2:43694857-43694876 | None:intergenic | 30.0% | |
| TCTAACTATGGATCTACTTA+TGG | + | chr8_2:43693759-43693778 | Msa1249180:CDS | 30.0% | |
| !! | GGATCTATACTTGTTATCAT+AGG | - | chr8_2:43693799-43693818 | None:intergenic | 30.0% |
| TTATCATCATCACTCTTGAT+AGG | - | chr8_2:43693972-43693991 | None:intergenic | 30.0% | |
| ATTCTCAGATAAATATTCCC+CGG | - | chr8_2:43694030-43694049 | None:intergenic | 30.0% | |
| CACCGAAAATAGCAAAAATA+TGG | - | chr8_2:43694204-43694223 | None:intergenic | 30.0% | |
| TGTGTCTCAAGACATTATTT+GGG | - | chr8_2:43694431-43694450 | None:intergenic | 30.0% | |
| ATGTGTCTCAAGACATTATT+TGG | - | chr8_2:43694432-43694451 | None:intergenic | 30.0% | |
| AAACCTGTTACAAAACAGTA+GGG | + | chr8_2:43694474-43694493 | Msa1249180:intron | 30.0% | |
| ATTTCAACCCATCTTAATTG+AGG | + | chr8_2:43694766-43694785 | Msa1249180:intron | 30.0% | |
| TGTTGACCTTTAATTGAACA+AGG | - | chr8_2:43694857-43694876 | None:intergenic | 30.0% | |
| AACTTGCATAGCTATTCATC+TGG | + | chr8_2:43693651-43693670 | Msa1249180:CDS | 35.0% | |
| CCATTAGGATATCCAGAATA+CGG | - | chr8_2:43693684-43693703 | None:intergenic | 35.0% | |
| CGTATTCTGGATATCCTAAT+GGG | + | chr8_2:43693682-43693701 | Msa1249180:CDS | 35.0% | |
| AACATGATGTACAGCCAATA+TGG | + | chr8_2:43693717-43693736 | Msa1249180:CDS | 35.0% | |
| CTCTGTATGTGTTTCCATAT+TGG | - | chr8_2:43693734-43693753 | None:intergenic | 35.0% | |
| CAATATGGAAACACATACAG+AGG | + | chr8_2:43693732-43693751 | Msa1249180:CDS | 35.0% | |
| TGACCATGTCAAAAGAAATG+CGG | + | chr8_2:43693839-43693858 | Msa1249180:CDS | 35.0% | |
| ACCTGTCACATTATTACTCA+AGG | + | chr8_2:43693935-43693954 | Msa1249180:CDS | 35.0% | |
| CCTGTCACATTATTACTCAA+GGG | + | chr8_2:43693936-43693955 | Msa1249180:CDS | 35.0% | |
| TGTCATCAAATCTTATAGCG+AGG | + | chr8_2:43694070-43694089 | Msa1249180:CDS | 35.0% | |
| ! | TAGCTTCTTGTTTCCATTAG+GGG | - | chr8_2:43694138-43694157 | None:intergenic | 35.0% |
| ! | CTAGCTTCTTGTTTCCATTA+GGG | - | chr8_2:43694139-43694158 | None:intergenic | 35.0% |
| ! | TCTAGCTTCTTGTTTCCATT+AGG | - | chr8_2:43694140-43694159 | None:intergenic | 35.0% |
| ! | TCTCGATCCAGTATTTTGTT+GGG | + | chr8_2:43694232-43694251 | Msa1249180:intron | 35.0% |
| AAATCATGAGGCAAAAAGTG+AGG | - | chr8_2:43694287-43694306 | None:intergenic | 35.0% | |
| ! | TGCCTCATGATTTTTGTTAC+AGG | + | chr8_2:43694294-43694313 | Msa1249180:intron | 35.0% |
| GACCTGTAACAAAAATCATG+AGG | - | chr8_2:43694299-43694318 | None:intergenic | 35.0% | |
| TTGTTACAGGTCAATACTAG+TGG | + | chr8_2:43694307-43694326 | Msa1249180:intron | 35.0% | |
| AATACTAGTGGCCAATTTGT+TGG | + | chr8_2:43694319-43694338 | Msa1249180:CDS | 35.0% | |
| TCTCAGCTAAACCAACAAAT+TGG | - | chr8_2:43694333-43694352 | None:intergenic | 35.0% | |
| !! | ATTTGTTGGTTTAGCTGAGA+TGG | + | chr8_2:43694333-43694352 | Msa1249180:CDS | 35.0% |
| CAAACCTGTTACAAAACAGT+AGG | + | chr8_2:43694473-43694492 | Msa1249180:intron | 35.0% | |
| ! | TTGTTTGTTGAAAGGTGCAT+GGG | - | chr8_2:43694545-43694564 | None:intergenic | 35.0% |
| ! | ATTGTTTGTTGAAAGGTGCA+TGG | - | chr8_2:43694546-43694565 | None:intergenic | 35.0% |
| ! | GTCAAGCATTGTTTGTTGAA+AGG | - | chr8_2:43694553-43694572 | None:intergenic | 35.0% |
| ATCAAGCAAAACATGCATTC+TGG | + | chr8_2:43694635-43694654 | Msa1249180:CDS | 35.0% | |
| ! | GGATGATTTTGCATTTTACG+AGG | + | chr8_2:43694656-43694675 | Msa1249180:CDS | 35.0% |
| !!! | CTTAGCTTTTTTCTCCTGAA+TGG | - | chr8_2:43694694-43694713 | None:intergenic | 35.0% |
| CATTCAGGAGAAAAAAGCTA+AGG | + | chr8_2:43694692-43694711 | Msa1249180:CDS | 35.0% | |
| TCTAATAGTTGCTGCATCAT+TGG | - | chr8_2:43694883-43694902 | None:intergenic | 35.0% | |
| ! | AACAACTGATTCATTCACCA+AGG | - | chr8_2:43694937-43694956 | None:intergenic | 35.0% |
| AACTTGCATAGCTATTCATC+TGG | + | chr8_2:43693651-43693670 | Msa1249180:CDS | 35.0% | |
| CCATTAGGATATCCAGAATA+CGG | - | chr8_2:43693684-43693703 | None:intergenic | 35.0% | |
| CGTATTCTGGATATCCTAAT+GGG | + | chr8_2:43693682-43693701 | Msa1249180:CDS | 35.0% | |
| AACATGATGTACAGCCAATA+TGG | + | chr8_2:43693717-43693736 | Msa1249180:CDS | 35.0% | |
| CTCTGTATGTGTTTCCATAT+TGG | - | chr8_2:43693734-43693753 | None:intergenic | 35.0% | |
| CAATATGGAAACACATACAG+AGG | + | chr8_2:43693732-43693751 | Msa1249180:CDS | 35.0% | |
| TGACCATGTCAAAAGAAATG+CGG | + | chr8_2:43693839-43693858 | Msa1249180:CDS | 35.0% | |
| ACCTGTCACATTATTACTCA+AGG | + | chr8_2:43693935-43693954 | Msa1249180:CDS | 35.0% | |
| CCTGTCACATTATTACTCAA+GGG | + | chr8_2:43693936-43693955 | Msa1249180:CDS | 35.0% | |
| TGTCATCAAATCTTATAGCG+AGG | + | chr8_2:43694070-43694089 | Msa1249180:CDS | 35.0% | |
| ! | TAGCTTCTTGTTTCCATTAG+GGG | - | chr8_2:43694138-43694157 | None:intergenic | 35.0% |
| ! | CTAGCTTCTTGTTTCCATTA+GGG | - | chr8_2:43694139-43694158 | None:intergenic | 35.0% |
| ! | TCTAGCTTCTTGTTTCCATT+AGG | - | chr8_2:43694140-43694159 | None:intergenic | 35.0% |
| ! | TCTCGATCCAGTATTTTGTT+GGG | + | chr8_2:43694232-43694251 | Msa1249180:intron | 35.0% |
| AAATCATGAGGCAAAAAGTG+AGG | - | chr8_2:43694287-43694306 | None:intergenic | 35.0% | |
| ! | TGCCTCATGATTTTTGTTAC+AGG | + | chr8_2:43694294-43694313 | Msa1249180:intron | 35.0% |
| GACCTGTAACAAAAATCATG+AGG | - | chr8_2:43694299-43694318 | None:intergenic | 35.0% | |
| TTGTTACAGGTCAATACTAG+TGG | + | chr8_2:43694307-43694326 | Msa1249180:intron | 35.0% | |
| AATACTAGTGGCCAATTTGT+TGG | + | chr8_2:43694319-43694338 | Msa1249180:CDS | 35.0% | |
| TCTCAGCTAAACCAACAAAT+TGG | - | chr8_2:43694333-43694352 | None:intergenic | 35.0% | |
| !! | ATTTGTTGGTTTAGCTGAGA+TGG | + | chr8_2:43694333-43694352 | Msa1249180:CDS | 35.0% |
| CAAACCTGTTACAAAACAGT+AGG | + | chr8_2:43694473-43694492 | Msa1249180:intron | 35.0% | |
| ! | TTGTTTGTTGAAAGGTGCAT+GGG | - | chr8_2:43694545-43694564 | None:intergenic | 35.0% |
| ! | ATTGTTTGTTGAAAGGTGCA+TGG | - | chr8_2:43694546-43694565 | None:intergenic | 35.0% |
| ! | GTCAAGCATTGTTTGTTGAA+AGG | - | chr8_2:43694553-43694572 | None:intergenic | 35.0% |
| ATCAAGCAAAACATGCATTC+TGG | + | chr8_2:43694635-43694654 | Msa1249180:CDS | 35.0% | |
| ! | GGATGATTTTGCATTTTACG+AGG | + | chr8_2:43694656-43694675 | Msa1249180:CDS | 35.0% |
| !!! | CTTAGCTTTTTTCTCCTGAA+TGG | - | chr8_2:43694694-43694713 | None:intergenic | 35.0% |
| CATTCAGGAGAAAAAAGCTA+AGG | + | chr8_2:43694692-43694711 | Msa1249180:CDS | 35.0% | |
| TCTAATAGTTGCTGCATCAT+TGG | - | chr8_2:43694883-43694902 | None:intergenic | 35.0% | |
| ! | AACAACTGATTCATTCACCA+AGG | - | chr8_2:43694937-43694956 | None:intergenic | 35.0% |
| TCACCTCAACTATTGTTCCT+AGG | + | chr8_2:43693622-43693641 | Msa1249180:CDS | 40.0% | |
| CAACCTAGGAACAATAGTTG+AGG | - | chr8_2:43693628-43693647 | None:intergenic | 40.0% | |
| CATAGCTATTCATCTGGACT+GGG | + | chr8_2:43693657-43693676 | Msa1249180:CDS | 40.0% | |
| CCGTATTCTGGATATCCTAA+TGG | + | chr8_2:43693681-43693700 | Msa1249180:CDS | 40.0% | |
| TCTACTTATGGATCCAGAAC+AGG | + | chr8_2:43693771-43693790 | Msa1249180:CDS | 40.0% | |
| GTTATCATAGGAACCTGTTC+TGG | - | chr8_2:43693787-43693806 | None:intergenic | 40.0% | |
| AAGTATAGATCCACACGCTA+TGG | + | chr8_2:43693807-43693826 | Msa1249180:CDS | 40.0% | |
| ! | CATCCGCATTTCTTTTGACA+TGG | - | chr8_2:43693845-43693864 | None:intergenic | 40.0% |
| CATGTCAAAAGAAATGCGGA+TGG | + | chr8_2:43693843-43693862 | Msa1249180:CDS | 40.0% | |
| AAAAGAAATGCGGATGGCTT+TGG | + | chr8_2:43693849-43693868 | Msa1249180:CDS | 40.0% | |
| TCAGAACTATTGGAACCTCT+CGG | - | chr8_2:43693891-43693910 | None:intergenic | 40.0% | |
| CCCTTGAGTAATAATGTGAC+AGG | - | chr8_2:43693939-43693958 | None:intergenic | 40.0% | |
| CACATTATTACTCAAGGGTC+AGG | + | chr8_2:43693941-43693960 | Msa1249180:CDS | 40.0% | |
| CATCATCACTCTTGATAGGA+AGG | - | chr8_2:43693968-43693987 | None:intergenic | 40.0% | |
| ! | TATTGTTGCTTGTCAGGAAC+TGG | - | chr8_2:43694005-43694024 | None:intergenic | 40.0% |
| TGGAAACAAGAAGCTAGATG+CGG | + | chr8_2:43694142-43694161 | Msa1249180:CDS | 40.0% | |
| ! | GTCTCGATCCAGTATTTTGT+TGG | + | chr8_2:43694231-43694250 | Msa1249180:intron | 40.0% |
| AGGAATGCCCAACAAAATAC+TGG | - | chr8_2:43694242-43694261 | None:intergenic | 40.0% | |
| TGTGAAGTGGCGTATCATTA+AGG | + | chr8_2:43694401-43694420 | Msa1249180:intron | 40.0% | |
| ! | TGTCCCTACTGTTTTGTAAC+AGG | - | chr8_2:43694480-43694499 | None:intergenic | 40.0% |
| ! | TGTTTGTTGAAAGGTGCATG+GGG | - | chr8_2:43694544-43694563 | None:intergenic | 40.0% |
| TGATGTATTGCCGAAATCTC+AGG | + | chr8_2:43694905-43694924 | Msa1249180:CDS | 40.0% | |
| AAGGTTCCATCCTGAGATTT+CGG | - | chr8_2:43694918-43694937 | None:intergenic | 40.0% | |
| TCACCTCAACTATTGTTCCT+AGG | + | chr8_2:43693622-43693641 | Msa1249180:CDS | 40.0% | |
| CAACCTAGGAACAATAGTTG+AGG | - | chr8_2:43693628-43693647 | None:intergenic | 40.0% | |
| CATAGCTATTCATCTGGACT+GGG | + | chr8_2:43693657-43693676 | Msa1249180:CDS | 40.0% | |
| CCGTATTCTGGATATCCTAA+TGG | + | chr8_2:43693681-43693700 | Msa1249180:CDS | 40.0% | |
| TCTACTTATGGATCCAGAAC+AGG | + | chr8_2:43693771-43693790 | Msa1249180:CDS | 40.0% | |
| GTTATCATAGGAACCTGTTC+TGG | - | chr8_2:43693787-43693806 | None:intergenic | 40.0% | |
| AAGTATAGATCCACACGCTA+TGG | + | chr8_2:43693807-43693826 | Msa1249180:CDS | 40.0% | |
| ! | CATCCGCATTTCTTTTGACA+TGG | - | chr8_2:43693845-43693864 | None:intergenic | 40.0% |
| CATGTCAAAAGAAATGCGGA+TGG | + | chr8_2:43693843-43693862 | Msa1249180:CDS | 40.0% | |
| AAAAGAAATGCGGATGGCTT+TGG | + | chr8_2:43693849-43693868 | Msa1249180:CDS | 40.0% | |
| TCAGAACTATTGGAACCTCT+CGG | - | chr8_2:43693891-43693910 | None:intergenic | 40.0% | |
| CCCTTGAGTAATAATGTGAC+AGG | - | chr8_2:43693939-43693958 | None:intergenic | 40.0% | |
| CACATTATTACTCAAGGGTC+AGG | + | chr8_2:43693941-43693960 | Msa1249180:CDS | 40.0% | |
| CATCATCACTCTTGATAGGA+AGG | - | chr8_2:43693968-43693987 | None:intergenic | 40.0% | |
| ! | TATTGTTGCTTGTCAGGAAC+TGG | - | chr8_2:43694005-43694024 | None:intergenic | 40.0% |
| TGGAAACAAGAAGCTAGATG+CGG | + | chr8_2:43694142-43694161 | Msa1249180:CDS | 40.0% | |
| ! | GTCTCGATCCAGTATTTTGT+TGG | + | chr8_2:43694231-43694250 | Msa1249180:intron | 40.0% |
| AGGAATGCCCAACAAAATAC+TGG | - | chr8_2:43694242-43694261 | None:intergenic | 40.0% | |
| TGTGAAGTGGCGTATCATTA+AGG | + | chr8_2:43694401-43694420 | Msa1249180:intron | 40.0% | |
| ! | TGTCCCTACTGTTTTGTAAC+AGG | - | chr8_2:43694480-43694499 | None:intergenic | 40.0% |
| ! | TGTTTGTTGAAAGGTGCATG+GGG | - | chr8_2:43694544-43694563 | None:intergenic | 40.0% |
| TGATGTATTGCCGAAATCTC+AGG | + | chr8_2:43694905-43694924 | Msa1249180:CDS | 40.0% | |
| AAGGTTCCATCCTGAGATTT+CGG | - | chr8_2:43694918-43694937 | None:intergenic | 40.0% | |
| CTATGCAAGTTCTGCAACCT+AGG | - | chr8_2:43693642-43693661 | None:intergenic | 45.0% | |
| GCATAGCTATTCATCTGGAC+TGG | + | chr8_2:43693656-43693675 | Msa1249180:CDS | 45.0% | |
| TTGCTTGGGTACATCCCATT+AGG | - | chr8_2:43693699-43693718 | None:intergenic | 45.0% | |
| ! | GGCTGTACATCATGTTGCTT+GGG | - | chr8_2:43693713-43693732 | None:intergenic | 45.0% |
| TGGCTGTACATCATGTTGCT+TGG | - | chr8_2:43693714-43693733 | None:intergenic | 45.0% | |
| ATGGAAACACATACAGAGGC+AGG | + | chr8_2:43693736-43693755 | Msa1249180:CDS | 45.0% | |
| TACAGAGGCAGGTCTAACTA+TGG | + | chr8_2:43693747-43693766 | Msa1249180:CDS | 45.0% | |
| AAAACCACTTCCATAGCGTG+TGG | - | chr8_2:43693820-43693839 | None:intergenic | 45.0% | |
| CCTGACAAGCAACAATACAC+CGG | + | chr8_2:43694008-43694027 | Msa1249180:CDS | 45.0% | |
| CTGACAAGCAACAATACACC+GGG | + | chr8_2:43694009-43694028 | Msa1249180:CDS | 45.0% | |
| TGACAAGCAACAATACACCG+GGG | + | chr8_2:43694010-43694029 | Msa1249180:CDS | 45.0% | |
| GTGTGGACAATTACCCCTAA+TGG | + | chr8_2:43694122-43694141 | Msa1249180:CDS | 45.0% | |
| AAAGTCAGCAGACTTCTCCT+TGG | - | chr8_2:43694180-43694199 | None:intergenic | 45.0% | |
| TTTAGCTGAGATGGTGAGTC+CGG | + | chr8_2:43694342-43694361 | Msa1249180:CDS | 45.0% | |
| !! | TGAGTCCGGTTGATTTTGAC+AGG | + | chr8_2:43694356-43694375 | Msa1249180:CDS | 45.0% |
| CCTGTCCTGTCAAAATCAAC+CGG | - | chr8_2:43694364-43694383 | None:intergenic | 45.0% | |
| !! | GTTGATTTTGACAGGACAGG+TGG | + | chr8_2:43694364-43694383 | Msa1249180:CDS | 45.0% |
| !!! | CTGGTTGCTTTTCTGTGAAG+TGG | + | chr8_2:43694388-43694407 | Msa1249180:intron | 45.0% |
| AAACAGTAGGGACACTCAAG+AGG | + | chr8_2:43694486-43694505 | Msa1249180:intron | 45.0% | |
| !! | CACTCAAGAGGTATTCACTC+AGG | + | chr8_2:43694498-43694517 | Msa1249180:intron | 45.0% |
| ! | GAAAGGTGCATGGGGTTAAT+GGG | - | chr8_2:43694536-43694555 | None:intergenic | 45.0% |
| ! | TGAAAGGTGCATGGGGTTAA+TGG | - | chr8_2:43694537-43694556 | None:intergenic | 45.0% |
| GCTTGACTATATCCTTGTGC+AGG | + | chr8_2:43694566-43694585 | Msa1249180:intron | 45.0% | |
| TCTCAAACTTGACCTGCACA+AGG | - | chr8_2:43694581-43694600 | None:intergenic | 45.0% | |
| TGTGCAGGTCAAGTTTGAGA+AGG | + | chr8_2:43694581-43694600 | Msa1249180:intron | 45.0% | |
| GTGCAGGTCAAGTTTGAGAA+GGG | + | chr8_2:43694582-43694601 | Msa1249180:intron | 45.0% | |
| GTATTGCCGAAATCTCAGGA+TGG | + | chr8_2:43694909-43694928 | Msa1249180:CDS | 45.0% | |
| GAAATCTCAGGATGGAACCT+TGG | + | chr8_2:43694917-43694936 | Msa1249180:CDS | 45.0% | |
| GAGAAGCTTGTAGAAGCGAA+TGG | + | chr8_2:43694978-43694997 | Msa1249180:CDS | 45.0% | |
| CTATGCAAGTTCTGCAACCT+AGG | - | chr8_2:43693642-43693661 | None:intergenic | 45.0% | |
| GCATAGCTATTCATCTGGAC+TGG | + | chr8_2:43693656-43693675 | Msa1249180:CDS | 45.0% | |
| TTGCTTGGGTACATCCCATT+AGG | - | chr8_2:43693699-43693718 | None:intergenic | 45.0% | |
| ! | GGCTGTACATCATGTTGCTT+GGG | - | chr8_2:43693713-43693732 | None:intergenic | 45.0% |
| TGGCTGTACATCATGTTGCT+TGG | - | chr8_2:43693714-43693733 | None:intergenic | 45.0% | |
| ATGGAAACACATACAGAGGC+AGG | + | chr8_2:43693736-43693755 | Msa1249180:CDS | 45.0% | |
| TACAGAGGCAGGTCTAACTA+TGG | + | chr8_2:43693747-43693766 | Msa1249180:CDS | 45.0% | |
| AAAACCACTTCCATAGCGTG+TGG | - | chr8_2:43693820-43693839 | None:intergenic | 45.0% | |
| CCTGACAAGCAACAATACAC+CGG | + | chr8_2:43694008-43694027 | Msa1249180:CDS | 45.0% | |
| CTGACAAGCAACAATACACC+GGG | + | chr8_2:43694009-43694028 | Msa1249180:CDS | 45.0% | |
| TGACAAGCAACAATACACCG+GGG | + | chr8_2:43694010-43694029 | Msa1249180:CDS | 45.0% | |
| GTGTGGACAATTACCCCTAA+TGG | + | chr8_2:43694122-43694141 | Msa1249180:CDS | 45.0% | |
| AAAGTCAGCAGACTTCTCCT+TGG | - | chr8_2:43694180-43694199 | None:intergenic | 45.0% | |
| TTTAGCTGAGATGGTGAGTC+CGG | + | chr8_2:43694342-43694361 | Msa1249180:CDS | 45.0% | |
| !! | TGAGTCCGGTTGATTTTGAC+AGG | + | chr8_2:43694356-43694375 | Msa1249180:CDS | 45.0% |
| CCTGTCCTGTCAAAATCAAC+CGG | - | chr8_2:43694364-43694383 | None:intergenic | 45.0% | |
| !! | GTTGATTTTGACAGGACAGG+TGG | + | chr8_2:43694364-43694383 | Msa1249180:CDS | 45.0% |
| !!! | CTGGTTGCTTTTCTGTGAAG+TGG | + | chr8_2:43694388-43694407 | Msa1249180:intron | 45.0% |
| AAACAGTAGGGACACTCAAG+AGG | + | chr8_2:43694486-43694505 | Msa1249180:intron | 45.0% | |
| !! | CACTCAAGAGGTATTCACTC+AGG | + | chr8_2:43694498-43694517 | Msa1249180:intron | 45.0% |
| ! | GAAAGGTGCATGGGGTTAAT+GGG | - | chr8_2:43694536-43694555 | None:intergenic | 45.0% |
| ! | TGAAAGGTGCATGGGGTTAA+TGG | - | chr8_2:43694537-43694556 | None:intergenic | 45.0% |
| GCTTGACTATATCCTTGTGC+AGG | + | chr8_2:43694566-43694585 | Msa1249180:intron | 45.0% | |
| TCTCAAACTTGACCTGCACA+AGG | - | chr8_2:43694581-43694600 | None:intergenic | 45.0% | |
| TGTGCAGGTCAAGTTTGAGA+AGG | + | chr8_2:43694581-43694600 | Msa1249180:intron | 45.0% | |
| GTGCAGGTCAAGTTTGAGAA+GGG | + | chr8_2:43694582-43694601 | Msa1249180:intron | 45.0% | |
| GTATTGCCGAAATCTCAGGA+TGG | + | chr8_2:43694909-43694928 | Msa1249180:CDS | 45.0% | |
| GAAATCTCAGGATGGAACCT+TGG | + | chr8_2:43694917-43694936 | Msa1249180:CDS | 45.0% | |
| GAGAAGCTTGTAGAAGCGAA+TGG | + | chr8_2:43694978-43694997 | Msa1249180:CDS | 45.0% | |
| AGATCCACACGCTATGGAAG+TGG | + | chr8_2:43693813-43693832 | Msa1249180:CDS | 50.0% | |
| !! | TGGCTTTGGTGAGCTGAACA+AGG | + | chr8_2:43693863-43693882 | Msa1249180:CDS | 50.0% |
| ! | GGCTTTGGTGAGCTGAACAA+GGG | + | chr8_2:43693864-43693883 | Msa1249180:CDS | 50.0% |
| ! | CCGGTGTATTGTTGCTTGTC+AGG | - | chr8_2:43694011-43694030 | None:intergenic | 50.0% |
| GAAGCTAGATGCGGCATATC+AGG | + | chr8_2:43694151-43694170 | Msa1249180:CDS | 50.0% | |
| ATGAGGCAAAAAGTGAGGCC+TGG | - | chr8_2:43694282-43694301 | None:intergenic | 50.0% | |
| !! | CCGGTTGATTTTGACAGGAC+AGG | + | chr8_2:43694361-43694380 | Msa1249180:CDS | 50.0% |
| ! | TTTTGACAGGACAGGTGGAC+TGG | + | chr8_2:43694369-43694388 | Msa1249180:CDS | 50.0% |
| AGATCCACACGCTATGGAAG+TGG | + | chr8_2:43693813-43693832 | Msa1249180:CDS | 50.0% | |
| !! | TGGCTTTGGTGAGCTGAACA+AGG | + | chr8_2:43693863-43693882 | Msa1249180:CDS | 50.0% |
| ! | GGCTTTGGTGAGCTGAACAA+GGG | + | chr8_2:43693864-43693883 | Msa1249180:CDS | 50.0% |
| ! | CCGGTGTATTGTTGCTTGTC+AGG | - | chr8_2:43694011-43694030 | None:intergenic | 50.0% |
| GAAGCTAGATGCGGCATATC+AGG | + | chr8_2:43694151-43694170 | Msa1249180:CDS | 50.0% | |
| ATGAGGCAAAAAGTGAGGCC+TGG | - | chr8_2:43694282-43694301 | None:intergenic | 50.0% | |
| !! | CCGGTTGATTTTGACAGGAC+AGG | + | chr8_2:43694361-43694380 | Msa1249180:CDS | 50.0% |
| ! | TTTTGACAGGACAGGTGGAC+TGG | + | chr8_2:43694369-43694388 | Msa1249180:CDS | 50.0% |
| ! | TCTGGACTGGGACCGTATTC+TGG | + | chr8_2:43693669-43693688 | Msa1249180:CDS | 55.0% |
| TGCGGCATATCAGGAAGCCA+AGG | + | chr8_2:43694160-43694179 | Msa1249180:CDS | 55.0% | |
| GGCTCGCGAAAAGACCATTC+AGG | + | chr8_2:43694677-43694696 | Msa1249180:CDS | 55.0% | |
| TCAGTTGTTCCAGATGCCGC+AGG | + | chr8_2:43694948-43694967 | Msa1249180:CDS | 55.0% | |
| CAGTTGTTCCAGATGCCGCA+GGG | + | chr8_2:43694949-43694968 | Msa1249180:CDS | 55.0% | |
| GGCGGTTCAGTAGGTGAAGT+AGG | - | chr8_2:43695005-43695024 | None:intergenic | 55.0% | |
| CTGTTCGAAGAGTCTGCAGG+CGG | - | chr8_2:43695023-43695042 | None:intergenic | 55.0% | |
| CAGCTGTTCGAAGAGTCTGC+AGG | - | chr8_2:43695026-43695045 | None:intergenic | 55.0% | |
| ! | TCTGGACTGGGACCGTATTC+TGG | + | chr8_2:43693669-43693688 | Msa1249180:CDS | 55.0% |
| TGCGGCATATCAGGAAGCCA+AGG | + | chr8_2:43694160-43694179 | Msa1249180:CDS | 55.0% | |
| GGCTCGCGAAAAGACCATTC+AGG | + | chr8_2:43694677-43694696 | Msa1249180:CDS | 55.0% | |
| TCAGTTGTTCCAGATGCCGC+AGG | + | chr8_2:43694948-43694967 | Msa1249180:CDS | 55.0% | |
| CAGTTGTTCCAGATGCCGCA+GGG | + | chr8_2:43694949-43694968 | Msa1249180:CDS | 55.0% | |
| GGCGGTTCAGTAGGTGAAGT+AGG | - | chr8_2:43695005-43695024 | None:intergenic | 55.0% | |
| CTGTTCGAAGAGTCTGCAGG+CGG | - | chr8_2:43695023-43695042 | None:intergenic | 55.0% | |
| CAGCTGTTCGAAGAGTCTGC+AGG | - | chr8_2:43695026-43695045 | None:intergenic | 55.0% | |
| GAGCTGAACAAGGGACCGAG+AGG | + | chr8_2:43693873-43693892 | Msa1249180:CDS | 60.0% | |
| TTCCAGATGCCGCAGGGACA+GGG | + | chr8_2:43694955-43694974 | Msa1249180:CDS | 60.0% | |
| AAGCTTCTCCCCTGTCCCTG+CGG | - | chr8_2:43694967-43694986 | None:intergenic | 60.0% | |
| GAGTCTGCAGGCGGTTCAGT+AGG | - | chr8_2:43695014-43695033 | None:intergenic | 60.0% | |
| CGACTGCTTGACGTCGTCAC+TGG | - | chr8_2:43695054-43695073 | None:intergenic | 60.0% | |
| GAGCTGAACAAGGGACCGAG+AGG | + | chr8_2:43693873-43693892 | Msa1249180:CDS | 60.0% | |
| TTCCAGATGCCGCAGGGACA+GGG | + | chr8_2:43694955-43694974 | Msa1249180:CDS | 60.0% | |
| AAGCTTCTCCCCTGTCCCTG+CGG | - | chr8_2:43694967-43694986 | None:intergenic | 60.0% | |
| GAGTCTGCAGGCGGTTCAGT+AGG | - | chr8_2:43695014-43695033 | None:intergenic | 60.0% | |
| CGACTGCTTGACGTCGTCAC+TGG | - | chr8_2:43695054-43695073 | None:intergenic | 60.0% | |
| GTTCCAGATGCCGCAGGGAC+AGG | + | chr8_2:43694954-43694973 | Msa1249180:CDS | 65.0% | |
| TCCAGATGCCGCAGGGACAG+GGG | + | chr8_2:43694956-43694975 | Msa1249180:CDS | 65.0% | |
| GTTCCAGATGCCGCAGGGAC+AGG | + | chr8_2:43694954-43694973 | Msa1249180:CDS | 65.0% | |
| TCCAGATGCCGCAGGGACAG+GGG | + | chr8_2:43694956-43694975 | Msa1249180:CDS | 65.0% | |
| TCCCCTGTCCCTGCGGCATC+TGG | - | chr8_2:43694960-43694979 | None:intergenic | 70.0% | |
| TCCCCTGTCCCTGCGGCATC+TGG | - | chr8_2:43694960-43694979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 43693609 | 43695082 | 43693609 | ID=Msa1249180;Name=Msa1249180 |
| chr8_2 | mRNA | 43693609 | 43695082 | 43693609 | ID=Msa1249180-mRNA-1;Parent=Msa1249180;Name=Msa1249180-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0|0|1|1|1|4|0|348 |
| chr8_2 | exon | 43693609 | 43694220 | 43693609 | ID=Msa1249180-mRNA-1:exon:13299;Parent=Msa1249180-mRNA-1 |
| chr8_2 | exon | 43694316 | 43694390 | 43694316 | ID=Msa1249180-mRNA-1:exon:13300;Parent=Msa1249180-mRNA-1 |
| chr8_2 | exon | 43694588 | 43694734 | 43694588 | ID=Msa1249180-mRNA-1:exon:13301;Parent=Msa1249180-mRNA-1 |
| chr8_2 | exon | 43694870 | 43695082 | 43694870 | ID=Msa1249180-mRNA-1:exon:13302;Parent=Msa1249180-mRNA-1 |
| chr8_2 | CDS | 43693609 | 43694220 | 43693609 | ID=Msa1249180-mRNA-1:cds;Parent=Msa1249180-mRNA-1 |
| chr8_2 | CDS | 43694316 | 43694390 | 43694316 | ID=Msa1249180-mRNA-1:cds;Parent=Msa1249180-mRNA-1 |
| chr8_2 | CDS | 43694588 | 43694734 | 43694588 | ID=Msa1249180-mRNA-1:cds;Parent=Msa1249180-mRNA-1 |
| chr8_2 | CDS | 43694870 | 43695082 | 43694870 | ID=Msa1249180-mRNA-1:cds;Parent=Msa1249180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
