AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740510 MtrunA17_Chr5g0440841 85.390 308 6 1 1 308 1 269 0.0 515
Msa0740510 MtrunA17_Chr3g0080341 37.330 367 126 8 1 308 1 322 3.66e-59 192
Msa0740510 MtrunA17_Chr8g0355121 41.127 355 120 9 1 308 1 313 3.98e-59 191
Msa0740510 MtrunA17_Chr6g0460301 35.083 362 135 10 6 308 1 321 6.78e-37 134
Msa0740510 MtrunA17_Chr7g0254991 43.750 144 62 5 6 140 1 134 9.57e-24 99.0
Msa0740510 MtrunA17_Chr7g0254991 38.235 170 59 6 138 306 194 318 3.26e-16 77.8
Msa0740510 MtrunA17_Chr3g0133971 46.721 122 55 3 22 140 27 141 2.28e-22 96.7
Msa0740510 MtrunA17_Chr3g0133971 52.000 75 34 1 172 244 324 398 9.49e-13 68.2
Msa0740510 MtrunA17_Chr2g0321411 31.984 247 134 9 25 241 11 253 7.31e-21 90.5
Msa0740510 MtrunA17_Chr4g0044771 41.732 127 59 4 22 140 18 137 7.01e-20 89.0
Msa0740510 MtrunA17_Chr2g0321381 28.920 287 155 8 1 241 1 284 1.21e-15 75.9
Msa0740510 MtrunA17_Chr7g0266211 35.878 131 66 2 29 141 46 176 1.23e-14 73.9
Msa0740510 MtrunA17_Chr1g0201751 34.637 179 92 6 87 243 32 207 1.20e-11 63.5
Msa0740510 MtrunA17_Chr4g0051101 38.211 123 56 3 124 243 70 175 2.21e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740510 AT3G56850.1 38.390 323 122 12 22 308 16 297 9.12e-46 157
Msa0740510 AT2G41070.3 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0740510 AT2G41070.1 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0740510 AT2G41070.2 36.667 300 120 7 22 306 16 260 5.07e-42 146
Msa0740510 AT2G41070.4 36.667 300 120 7 22 306 25 269 7.44e-42 146
Msa0740510 AT2G41070.5 41.322 242 110 7 22 247 16 241 1.60e-40 142
Msa0740510 AT1G49720.1 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0740510 AT1G49720.3 42.188 128 65 1 22 140 23 150 1.52e-23 99.8
Msa0740510 AT1G49720.2 42.188 128 65 1 22 140 23 150 1.68e-23 99.8
Msa0740510 AT4G34000.3 39.873 158 56 4 22 140 27 184 8.20e-22 95.5
Msa0740510 AT4G34000.1 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0740510 AT4G34000.4 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0740510 AT4G34000.2 39.873 158 56 4 22 140 27 184 1.37e-21 94.7
Msa0740510 AT3G44460.1 33.716 261 124 7 24 241 37 291 7.67e-20 88.6
Msa0740510 AT3G19290.2 38.686 137 66 3 22 140 34 170 3.76e-19 87.4
Msa0740510 AT3G19290.4 38.686 137 66 3 22 140 34 170 5.46e-19 87.0
Msa0740510 AT3G19290.3 38.686 137 66 3 22 140 34 170 6.39e-19 87.0
Msa0740510 AT3G19290.1 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0740510 AT3G19290.5 38.686 137 66 3 22 140 34 170 6.42e-19 87.0
Msa0740510 AT1G03970.1 40.244 164 73 5 94 244 83 234 1.89e-17 80.9
Msa0740510 AT1G45249.1 39.098 133 64 4 22 140 21 150 4.40e-16 78.6
Msa0740510 AT1G45249.4 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0740510 AT1G45249.8 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0740510 AT1G45249.2 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0740510 AT1G45249.9 39.098 133 64 4 22 140 21 150 4.76e-16 78.6
Msa0740510 AT1G45249.7 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0740510 AT1G45249.6 39.098 133 64 4 22 140 36 165 4.91e-16 78.6
Msa0740510 AT1G45249.10 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0740510 AT1G45249.5 39.098 133 64 4 22 140 21 150 5.16e-16 78.2
Msa0740510 AT1G45249.3 39.098 133 64 4 22 140 21 150 6.18e-16 78.2
Msa0740510 AT2G17770.2 29.651 172 95 5 98 244 1 171 2.28e-12 65.1
Msa0740510 AT2G36270.3 61.404 57 22 0 184 240 342 398 1.69e-11 65.1
Msa0740510 AT2G36270.1 61.404 57 22 0 184 240 342 398 1.97e-11 64.7
Msa0740510 AT2G36270.2 61.404 57 22 0 184 240 342 398 1.97e-11 64.7

Find 127 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATCATGAGAAATAATT+TGG 0.110275 5_1:-59453562 None:intergenic
TCAACATAAATTTGTGAATA+TGG 0.139500 5_1:-59457896 None:intergenic
GAAATTAAGTAGGTCTTATT+AGG 0.195039 5_1:+59458192 Msa0740510:three_prime_UTR
TGTAAGCTGAGGTGATTATT+AGG 0.210490 5_1:+59458128 Msa0740510:three_prime_UTR
CTACTTAATTTCAGTTTCTT+TGG 0.232176 5_1:-59458181 None:intergenic
CCTTCAGACCTTCTCAAATA+TGG 0.248350 5_1:+59455784 Msa0740510:CDS
AATAGTCTACTAGGAGATTT+GGG 0.275351 5_1:+59454589 Msa0740510:CDS
TAATAGTCTACTAGGAGATT+TGG 0.281034 5_1:+59454588 Msa0740510:CDS
CCTTGGTAACCAGTTCATTA+TGG 0.284719 5_1:-59455266 None:intergenic
ACTCTTCGAAGACGGTATTT+AGG 0.289336 5_1:-59457823 None:intergenic
TTAGGTTCAGGTGATGATTC+AGG 0.303409 5_1:-59457805 None:intergenic
CAACATAAATTTGTGAATAT+GGG 0.318760 5_1:-59457895 None:intergenic
TTACCTGAAGGAAAAGAAAT+AGG 0.328349 5_1:-59453821 None:intergenic
GTAAGCTGAGGTGATTATTA+GGG 0.331486 5_1:+59458129 Msa0740510:three_prime_UTR
GTTTGATGTTCATAGGCTTC+AGG 0.334827 5_1:+59458046 Msa0740510:three_prime_UTR
CGAAGACGGTATTTAGGTTC+AGG 0.343807 5_1:-59457817 None:intergenic
TGGGCAACAGTCTCATTTAC+AGG 0.354570 5_1:+59454513 Msa0740510:CDS
CTTCAGACCTCAGTCCTACT+AGG 0.381395 5_1:+59455740 Msa0740510:CDS
GCTGAAGGAAATAAGGTTGT+AGG 0.386567 5_1:+59454664 Msa0740510:CDS
TTCTTCAATTAGTAGTTTGT+CGG 0.387734 5_1:+59454996 Msa0740510:CDS
GGAGATTTGGGGAAGCCGTT+AGG 0.390252 5_1:+59454601 Msa0740510:CDS
GAAAGTTGAGGATAGGGAAA+TGG 0.390564 5_1:+59454831 Msa0740510:CDS
TTGAGAAGGTCTGAAGGAAT+TGG 0.394839 5_1:-59455778 None:intergenic
TGAGAAGGAAAATCAAGAAT+AGG 0.395993 5_1:+59455082 Msa0740510:CDS
CCTTGCACAGGAGTTTGAGC+AGG 0.397902 5_1:+59457774 Msa0740510:intron
TGCTGGTCACTTGTCAGAAA+AGG 0.398451 5_1:-59457855 None:intergenic
GGAAGAAACCGATTAAAGTA+TGG 0.403603 5_1:-59453767 None:intergenic
TACTATAGCGAAAGCACACC+AGG 0.405628 5_1:-59457967 None:intergenic
CTAGGTCAGAAGAAACAATA+TGG 0.406097 5_1:+59454799 Msa0740510:CDS
CAATGGGTTCTCAAAGTAAT+GGG 0.413643 5_1:+59454494 Msa0740510:CDS
AGTTAGTTAAGCAAAATTCA+TGG 0.414879 5_1:+59454542 Msa0740510:CDS
CAATAATCTGAACAAGTTAG+AGG 0.421804 5_1:-59453788 None:intergenic
ATTGTTTCTTCTGACCTAGC+TGG 0.422038 5_1:-59454795 None:intergenic
AGCTAAGGTTTGATGTTCAT+AGG 0.425292 5_1:+59458039 Msa0740510:three_prime_UTR
AAATTTATGTTGAAGTATCC+TGG 0.427224 5_1:+59457906 Msa0740510:three_prime_UTR
GAGAAGGAAAATCAAGAATA+GGG 0.428756 5_1:+59455083 Msa0740510:CDS
GCGTTCACGTGCAAGAAAAC+AGG 0.432338 5_1:+59455116 Msa0740510:CDS
AGTTTGTCGGATGCAAAATC+AGG 0.438269 5_1:+59455009 Msa0740510:CDS
GTGGACTGCTGAAGGAAATA+AGG 0.439159 5_1:+59454657 Msa0740510:CDS
ATGCAAAATCAGGTCGCAAA+AGG 0.439902 5_1:+59455019 Msa0740510:CDS
ATCTATATTAACTAACTAAA+GGG 0.443756 5_1:+59458008 Msa0740510:three_prime_UTR
ATGTTGAAGTATCCTGGATA+AGG 0.445642 5_1:+59457912 Msa0740510:three_prime_UTR
TATCTATATTAACTAACTAA+AGG 0.445996 5_1:+59458007 Msa0740510:three_prime_UTR
GAGGTGATTATTAGGGAGTC+TGG 0.449100 5_1:+59458136 Msa0740510:three_prime_UTR
AAAGTTGAGGATAGGGAAAT+GGG 0.453635 5_1:+59454832 Msa0740510:CDS
AGGGAGTCTGGTTCTTGAAA+AGG 0.455796 5_1:+59458148 Msa0740510:three_prime_UTR
GAGATTTGGGGAAGCCGTTA+GGG 0.461727 5_1:+59454602 Msa0740510:CDS
CGATGTGAAAGTTGAGGATA+GGG 0.461810 5_1:+59454825 Msa0740510:CDS
TGTAGGGATGGAGAGTGAGC+AGG 0.463391 5_1:+59454681 Msa0740510:CDS
GGATGCATATGAGAAGGCTT+TGG 0.465775 5_1:+59455050 Msa0740510:CDS
GTTAAGCAAAATTCATGGTA+TGG 0.470540 5_1:+59454547 Msa0740510:CDS
GAAATGAAAGTGAGTTGAAT+GGG 0.478556 5_1:+59454463 Msa0740510:exon
TTGCACGGTGTTGCTGCCCC+TGG 0.482023 5_1:+59457949 Msa0740510:three_prime_UTR
CTTGCACAGGAGTTTGAGCA+GGG 0.484759 5_1:+59457775 Msa0740510:intron
AAGAACCACTCCAAGTTTAG+AGG 0.485878 5_1:+59455828 Msa0740510:CDS
GGAAGACGGTGGATGATGTA+TGG 0.489215 5_1:+59454764 Msa0740510:CDS
TATTAGTCCGACGGTGGGGT+TGG 0.490449 5_1:+59454915 Msa0740510:CDS
GCTGGTCACTTGTCAGAAAA+GGG 0.496060 5_1:-59457854 None:intergenic
GGGTCTCGGTGGTACGACTT+TGG 0.498535 5_1:+59454852 Msa0740510:CDS
ACGATGTGAAAGTTGAGGAT+AGG 0.500216 5_1:+59454824 Msa0740510:CDS
ACAATGGGTTCTCAAAGTAA+TGG 0.500285 5_1:+59454493 Msa0740510:CDS
ATCGTCTTCTCTTCAACGGC+AGG 0.510272 5_1:+59454711 Msa0740510:CDS
GCTTCTATTAGTCCGACGGT+GGG 0.511307 5_1:+59454910 Msa0740510:CDS
CAAACTACTAATTGAAGAAG+AGG 0.512419 5_1:-59454992 None:intergenic
ATTTGTGAATATGGGGAATG+AGG 0.513016 5_1:-59457887 None:intergenic
GACGGTGGGGTTGGATGCAA+TGG 0.513361 5_1:+59454924 Msa0740510:CDS
CTGTTCTAGCAGAGTAACCT+TGG 0.515075 5_1:-59455283 None:intergenic
AAGTTATGCTCTCCTTATCC+AGG 0.515544 5_1:-59457924 None:intergenic
AGGTCGCAAAAGGGATGCTC+CGG 0.515870 5_1:+59455029 Msa0740510:CDS
CTTTCAACCGAAAACAAGCT+TGG 0.516273 5_1:+59454966 Msa0740510:CDS
CAAAGAAACTGAAATTAAGT+AGG 0.516851 5_1:+59458182 Msa0740510:three_prime_UTR
CTGAAGGAAATAAGGTTGTA+GGG 0.518539 5_1:+59454665 Msa0740510:CDS
GCAGGCTTACCATAATGAAC+TGG 0.521206 5_1:+59455257 Msa0740510:intron
AGGAAATAAGGTTGTAGGGA+TGG 0.523139 5_1:+59454669 Msa0740510:CDS
CGTCATCGTCTTCTCTTCAA+CGG 0.525850 5_1:+59454707 Msa0740510:CDS
CTTTGGAAAGGAGGCTGAGA+AGG 0.527338 5_1:+59455067 Msa0740510:CDS
GAATGAGGAAACTTCACTGC+TGG 0.529335 5_1:-59457872 None:intergenic
GAGGATAGGGAAATGGGTCT+CGG 0.530192 5_1:+59454838 Msa0740510:CDS
TGCAAAATCAGGTCGCAAAA+GGG 0.532164 5_1:+59455020 Msa0740510:CDS
AACATAAATTTGTGAATATG+GGG 0.532622 5_1:-59457894 None:intergenic
TTGAATGGGGATTCAAACAA+TGG 0.534421 5_1:+59454477 Msa0740510:exon
TGAATGGGGATTCAAACAAT+GGG 0.535901 5_1:+59454478 Msa0740510:exon
AAAGCCTTCTCATATGCATC+CGG 0.537373 5_1:-59455048 None:intergenic
CTAGTAGGACTGAGGTCTGA+AGG 0.544396 5_1:-59455739 None:intergenic
GATGAGGTTAATAGTCTACT+AGG 0.549320 5_1:+59454580 Msa0740510:CDS
TAAAGGGTACATATTAGCTA+AGG 0.553242 5_1:+59458024 Msa0740510:three_prime_UTR
AAGATTGCCTTTGTAAGCTG+AGG 0.557060 5_1:+59458117 Msa0740510:three_prime_UTR
CAGAATGTGTGGACTGCTGA+AGG 0.557306 5_1:+59454649 Msa0740510:CDS
ATGGAGTGTACCTCTAAACT+TGG 0.560073 5_1:-59455838 None:intergenic
GAGTGTGTTAGAATTCAGAC+AGG 0.561239 5_1:-59453646 None:intergenic
CGAATTTCGACCAAATCAAG+TGG 0.565829 5_1:-59453711 None:intergenic
TGAAATGAAAGTGAGTTGAA+TGG 0.565868 5_1:+59454462 Msa0740510:exon
CACTCAGTCCATATTTGAGA+AGG 0.567961 5_1:-59455792 None:intergenic
ATGAGAAGGCTTTGGAAAGG+AGG 0.572932 5_1:+59455058 Msa0740510:CDS
TGGAGACGATGTGAAAGTTG+AGG 0.573499 5_1:+59454819 Msa0740510:CDS
TGGAGCTTCTATTAGTCCGA+CGG 0.576977 5_1:+59454906 Msa0740510:CDS
AGCTTCTATTAGTCCGACGG+TGG 0.577860 5_1:+59454909 Msa0740510:CDS
ACGAGCTTCTTCAGAATGTG+TGG 0.579972 5_1:+59454638 Msa0740510:CDS
CGTTGGCTCGTGCTTTGAGT+GGG 0.589340 5_1:+59454743 Msa0740510:CDS
TCGTGCTTTGAGTGGGAAGA+CGG 0.590102 5_1:+59454750 Msa0740510:CDS
ACGTTGGCTCGTGCTTTGAG+TGG 0.590747 5_1:+59454742 Msa0740510:CDS
CAGGAAAGATTTGAGTCTCG+TGG 0.592505 5_1:+59458065 Msa0740510:three_prime_UTR
ATAATCACCTCAGCTTACAA+AGG 0.599904 5_1:-59458124 None:intergenic
TCAAGATTCATGCTCCCTAA+CGG 0.602234 5_1:-59454616 None:intergenic
CTACTAGGAATAAAACAGAA+AGG 0.607878 5_1:+59455755 Msa0740510:CDS
CCATATTTGAGAAGGTCTGA+AGG 0.610076 5_1:-59455784 None:intergenic
CCATAATGAACTGGTTACCA+AGG 0.615234 5_1:+59455266 Msa0740510:CDS
GTATGGTCTAACTCTTGATG+AGG 0.618117 5_1:+59454564 Msa0740510:CDS
CTTCTATTAGTCCGACGGTG+GGG 0.618855 5_1:+59454911 Msa0740510:CDS
CAGAACTTACTCTTCGAAGA+CGG 0.629693 5_1:-59457831 None:intergenic
TGCTCCGGATGCATATGAGA+AGG 0.633586 5_1:+59455044 Msa0740510:CDS
TTGAAAGCTTTGAGGAATAG+CGG 0.633827 5_1:-59454950 None:intergenic
TATGCAGCTCAAGAAAGAGA+AGG 0.635674 5_1:+59455311 Msa0740510:CDS
AAATGAAAGTGAGTTGAATG+GGG 0.643853 5_1:+59454464 Msa0740510:exon
GAGAGCATAACTTCATTGCA+CGG 0.648663 5_1:+59457934 Msa0740510:three_prime_UTR
TGCTTTGAGTGGGAAGACGG+TGG 0.649656 5_1:+59454753 Msa0740510:CDS
GTGTACCTCTAAACTTGGAG+TGG 0.649695 5_1:-59455833 None:intergenic
ATTGCATCCAACCCCACCGT+CGG 0.650426 5_1:-59454922 None:intergenic
CATATGAGAAGGCTTTGGAA+AGG 0.652484 5_1:+59455055 Msa0740510:CDS
GATAGGGAAATGGGTCTCGG+TGG 0.652593 5_1:+59454841 Msa0740510:CDS
GTATGGAGAGAAATCCAGCT+AGG 0.652627 5_1:+59454781 Msa0740510:CDS
ACTATAGCGAAAGCACACCA+GGG 0.654661 5_1:-59457966 None:intergenic
ACGGCAGGCTAGTATGACGT+TGG 0.673052 5_1:+59454726 Msa0740510:CDS
GAAAGATTTGAGTCTCGTGG+TGG 0.686530 5_1:+59458068 Msa0740510:three_prime_UTR
ATAGTCTACTAGGAGATTTG+GGG 0.688137 5_1:+59454590 Msa0740510:CDS
CTATAGCGAAAGCACACCAG+GGG 0.699287 5_1:-59457965 None:intergenic
TTGCACAGGAGTTTGAGCAG+GGG 0.710311 5_1:+59457776 Msa0740510:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTTGTTTTTTTTTTT+TGG + chr5_1:59454348-59454367 Msa0740510:intron 10.0%
!!! ATGATTTGTTTTTTTTTTTT+GGG + chr5_1:59454349-59454368 Msa0740510:intron 10.0%
!! TTTAAATAAATTGATTGTAT+CGG + chr5_1:59455172-59455191 Msa0740510:intron 10.0%
!! AACAATAAAAATAAAACTAA+AGG + chr5_1:59455650-59455669 Msa0740510:intron 10.0%
!!! ATTAAAGTATGGATTTTTTT+TGG - chr5_1:59453759-59453778 None:intergenic 15.0%
!! AAAAAAATCCATACTTTAAT+CGG + chr5_1:59453759-59453778 Msa0740510:five_prime_UTR 15.0%
!!! TAATGAATGATTTTGATTAA+TGG + chr5_1:59453913-59453932 Msa0740510:intron 15.0%
!!! AATGAATGATTTTGATTAAT+GGG + chr5_1:59453914-59453933 Msa0740510:intron 15.0%
!! TAAAAATAAAACTAAAGGTA+AGG + chr5_1:59455655-59455674 Msa0740510:intron 15.0%
!!! AATGATTATTTTTGTCTTTT+AGG + chr5_1:59457018-59457037 Msa0740510:intron 15.0%
!!! ACTATTTTTTAAATCAAACA+TGG + chr5_1:59457147-59457166 Msa0740510:intron 15.0%
!! TATCTATATTAACTAACTAA+AGG + chr5_1:59458007-59458026 Msa0740510:three_prime_UTR 15.0%
!! ATCTATATTAACTAACTAAA+GGG + chr5_1:59458008-59458027 Msa0740510:three_prime_UTR 15.0%
!!! ATGAATGATTTTGATTAATG+GGG + chr5_1:59453915-59453934 Msa0740510:intron 20.0%
!! TTTAAGAAATAGAAGAATCT+AGG + chr5_1:59454136-59454155 Msa0740510:intron 20.0%
!! ATGAACTAAAAATAAAACCT+TGG - chr5_1:59455697-59455716 None:intergenic 20.0%
!! TAATGCGAAATACATAATAA+TGG - chr5_1:59456177-59456196 None:intergenic 20.0%
!! TGTCAATGTATTAGTTATTA+TGG + chr5_1:59456856-59456875 Msa0740510:intron 20.0%
!!! GTTATTTTTTCTCAAGTTAT+GGG - chr5_1:59457079-59457098 None:intergenic 20.0%
!!! AGTTATTTTTTCTCAAGTTA+TGG - chr5_1:59457080-59457099 None:intergenic 20.0%
!! AACTTGAGAAAAAATAACTT+TGG + chr5_1:59457081-59457100 Msa0740510:intron 20.0%
!! ACTTGAGAAAAAATAACTTT+GGG + chr5_1:59457082-59457101 Msa0740510:intron 20.0%
!!! AAGCATTCATTTTTTACTAT+GGG - chr5_1:59457225-59457244 None:intergenic 20.0%
!!! AAAGCATTCATTTTTTACTA+TGG - chr5_1:59457226-59457245 None:intergenic 20.0%
!!! ATTTTGTGTAATATGATCTT+AGG + chr5_1:59457325-59457344 Msa0740510:intron 20.0%
!! AAAGAATACACAATATAATC+AGG - chr5_1:59457753-59457772 None:intergenic 20.0%
!! AACATAAATTTGTGAATATG+GGG - chr5_1:59457897-59457916 None:intergenic 20.0%
!! CAACATAAATTTGTGAATAT+GGG - chr5_1:59457898-59457917 None:intergenic 20.0%
!! TCAACATAAATTTGTGAATA+TGG - chr5_1:59457899-59457918 None:intergenic 20.0%
!!! TATTAGGATTTTTAAAGTGA+AGG + chr5_1:59458208-59458227 Msa0740510:three_prime_UTR 20.0%
! CTCTATCATGAGAAATAATT+TGG - chr5_1:59453565-59453584 None:intergenic 25.0%
!!! AAGTATGGATTTTTTTTGGT+CGG - chr5_1:59453755-59453774 None:intergenic 25.0%
! CCATTAACATAAAAAAGAAG+AGG - chr5_1:59453859-59453878 None:intergenic 25.0%
!!! CCTCTTCTTTTTTATGTTAA+TGG + chr5_1:59453856-59453875 Msa0740510:intron 25.0%
! ATTTGTGGTATTTCCTAAAA+AGG + chr5_1:59453947-59453966 Msa0740510:intron 25.0%
! TTCCTAAAAAGGTTAAAACT+TGG + chr5_1:59453958-59453977 Msa0740510:intron 25.0%
!! TGGAAAAAAGTGTACAAAAA+TGG + chr5_1:59453981-59454000 Msa0740510:intron 25.0%
!!! TTTTTTGTAAACCAAGTATC+CGG - chr5_1:59454308-59454327 None:intergenic 25.0%
! AGTTAGTTAAGCAAAATTCA+TGG + chr5_1:59454542-59454561 Msa0740510:CDS 25.0%
!! TTCTTCAATTAGTAGTTTGT+CGG + chr5_1:59454996-59455015 Msa0740510:CDS 25.0%
! TTACTTTACATAACGCATAA+AGG - chr5_1:59455147-59455166 None:intergenic 25.0%
!! TATTCATCATTTTCCTTAGT+TGG + chr5_1:59455197-59455216 Msa0740510:intron 25.0%
! AAGCAAATATATTCCAACTA+AGG - chr5_1:59455213-59455232 None:intergenic 25.0%
! TGTGACTTATAAATGTTTGA+TGG + chr5_1:59455233-59455252 Msa0740510:intron 25.0%
! TCTACGAAAAGATAACTTAA+CGG - chr5_1:59455407-59455426 None:intergenic 25.0%
! TGATTCTGATTTCTTAATGT+CGG - chr5_1:59455513-59455532 None:intergenic 25.0%
! GTGAGGTATATTCTATTTAT+TGG + chr5_1:59455537-59455556 Msa0740510:intron 25.0%
! AACTAAAAATAAAACCTTGG+AGG - chr5_1:59455694-59455713 None:intergenic 25.0%
! ATTCTAAACCGTTCTATATA+AGG + chr5_1:59455998-59456017 Msa0740510:intron 25.0%
! TATGTTAGTAGCATTTAGTA+GGG + chr5_1:59456272-59456291 Msa0740510:intron 25.0%
! TCTTGTACTGTATTCTATAA+AGG + chr5_1:59456319-59456338 Msa0740510:intron 25.0%
! CACTAGAATTAAGTATCTAA+CGG - chr5_1:59456653-59456672 None:intergenic 25.0%
! ATTTCAGTTGTCATTCAATT+TGG + chr5_1:59456674-59456693 Msa0740510:intron 25.0%
!! ACCATTTATGTTGATTGATT+AGG - chr5_1:59456818-59456837 None:intergenic 25.0%
!! CACTGATATTTTACCATATT+AGG - chr5_1:59456921-59456940 None:intergenic 25.0%
!!! GCTTTATTTTTTAGTAGCAT+TGG + chr5_1:59456945-59456964 Msa0740510:intron 25.0%
! TATATCGAGATTATCTACAA+GGG - chr5_1:59457400-59457419 None:intergenic 25.0%
! ATATATCGAGATTATCTACA+AGG - chr5_1:59457401-59457420 None:intergenic 25.0%
! AATGGTACTTAATATAGCAA+AGG - chr5_1:59457440-59457459 None:intergenic 25.0%
!! AAATTTATGTTGAAGTATCC+TGG + chr5_1:59457906-59457925 Msa0740510:three_prime_UTR 25.0%
! CTACTTAATTTCAGTTTCTT+TGG - chr5_1:59458184-59458203 None:intergenic 25.0%
! CAAAGAAACTGAAATTAAGT+AGG + chr5_1:59458182-59458201 Msa0740510:three_prime_UTR 25.0%
!!! GAAATTAAGTAGGTCTTATT+AGG + chr5_1:59458192-59458211 Msa0740510:three_prime_UTR 25.0%
! TGATTCAGTTATGAAAAAGT+TGG + chr5_1:59458255-59458274 Msa0740510:three_prime_UTR 25.0%
! TGTTTTTCTTCCACTTGATT+TGG + chr5_1:59453701-59453720 Msa0740510:five_prime_UTR 30.0%
!!! AGTATGGATTTTTTTTGGTC+GGG - chr5_1:59453754-59453773 None:intergenic 30.0%
CAATAATCTGAACAAGTTAG+AGG - chr5_1:59453791-59453810 None:intergenic 30.0%
TTACCTGAAGGAAAAGAAAT+AGG - chr5_1:59453824-59453843 None:intergenic 30.0%
AACGAGTAATTATTACCTGA+AGG - chr5_1:59453836-59453855 None:intergenic 30.0%
!! CACCAAGTTTTAACCTTTTT+AGG - chr5_1:59453963-59453982 None:intergenic 30.0%
CTAAAAAGGTTAAAACTTGG+TGG + chr5_1:59453961-59453980 Msa0740510:intron 30.0%
AAATAGAAGAATCTAGGCTT+TGG + chr5_1:59454142-59454161 Msa0740510:intron 30.0%
! TGAAATGAAAGTGAGTTGAA+TGG + chr5_1:59454462-59454481 Msa0740510:exon 30.0%
! GAAATGAAAGTGAGTTGAAT+GGG + chr5_1:59454463-59454482 Msa0740510:exon 30.0%
! AAATGAAAGTGAGTTGAATG+GGG + chr5_1:59454464-59454483 Msa0740510:exon 30.0%
GTTAAGCAAAATTCATGGTA+TGG + chr5_1:59454547-59454566 Msa0740510:CDS 30.0%
TAATAGTCTACTAGGAGATT+TGG + chr5_1:59454588-59454607 Msa0740510:CDS 30.0%
AATAGTCTACTAGGAGATTT+GGG + chr5_1:59454589-59454608 Msa0740510:CDS 30.0%
!!! AAGATTTTTTAGTGCAAGCA+GGG + chr5_1:59454875-59454894 Msa0740510:CDS 30.0%
CAAACTACTAATTGAAGAAG+AGG - chr5_1:59454995-59455014 None:intergenic 30.0%
TGAGAAGGAAAATCAAGAAT+AGG + chr5_1:59455082-59455101 Msa0740510:CDS 30.0%
GAGAAGGAAAATCAAGAATA+GGG + chr5_1:59455083-59455102 Msa0740510:CDS 30.0%
!! TTATAAATGTTTGATGGTGC+AGG + chr5_1:59455239-59455258 Msa0740510:intron 30.0%
AAACTAAAGGTAAGGAAACT+AGG + chr5_1:59455663-59455682 Msa0740510:intron 30.0%
! GTTCATATAAGTGTTTCTGA+AGG + chr5_1:59455711-59455730 Msa0740510:intron 30.0%
!! CTTTCTGTTTTATTCCTAGT+AGG - chr5_1:59455757-59455776 None:intergenic 30.0%
CTACTAGGAATAAAACAGAA+AGG + chr5_1:59455755-59455774 Msa0740510:CDS 30.0%
ATACTTCTTAAATTGCTGCT+TGG - chr5_1:59455948-59455967 None:intergenic 30.0%
! TTTACAGGCCTTATATAGAA+CGG - chr5_1:59456009-59456028 None:intergenic 30.0%
! CACAAACACATGATTTTTAC+AGG - chr5_1:59456024-59456043 None:intergenic 30.0%
ACTACAACGTATACAGAAAA+GGG - chr5_1:59456081-59456100 None:intergenic 30.0%
!! ATTTTAGTGCCAGGAAAAAA+AGG - chr5_1:59456130-59456149 None:intergenic 30.0%
GTATGTTAGTAGCATTTAGT+AGG + chr5_1:59456271-59456290 Msa0740510:intron 30.0%
! ACCAATTTTACTTTATAGCC+TGG + chr5_1:59456342-59456361 Msa0740510:intron 30.0%
TCCAGGCTATAAAGTAAAAT+TGG - chr5_1:59456346-59456365 None:intergenic 30.0%
TCATCATGAATGAAAACCAT+TGG - chr5_1:59456383-59456402 None:intergenic 30.0%
! TTCATTCATGATGAGTTTTG+AGG + chr5_1:59456389-59456408 Msa0740510:intron 30.0%
CAAAATCAATAATCTATCCC+TGG + chr5_1:59456490-59456509 Msa0740510:intron 30.0%
ATGAAACTTCAAACGTATCT+TGG + chr5_1:59456768-59456787 Msa0740510:intron 30.0%
GCCTAATCAATCAACATAAA+TGG + chr5_1:59456814-59456833 Msa0740510:intron 30.0%
TGACATCTGTTATCCTAATA+TGG + chr5_1:59456905-59456924 Msa0740510:intron 30.0%
ACCATTATTACTTATCACGT+AGG + chr5_1:59456988-59457007 Msa0740510:intron 30.0%
TTTCTCAAGTTATGGGATAA+CGG - chr5_1:59457072-59457091 None:intergenic 30.0%
CTGATATGCAAAAAACTGAA+GGG - chr5_1:59457197-59457216 None:intergenic 30.0%
TCTGATATGCAAAAAACTGA+AGG - chr5_1:59457198-59457217 None:intergenic 30.0%
AACTTAAGTAGAGTTGCATA+AGG + chr5_1:59457297-59457316 Msa0740510:intron 30.0%
TGCTATATTAAGTACCATTG+TGG + chr5_1:59457441-59457460 Msa0740510:intron 30.0%
GTAAAATCAATACTCCACAA+TGG - chr5_1:59457458-59457477 None:intergenic 30.0%
!!! TGGAGTATTGATTTTACTTG+TGG + chr5_1:59457461-59457480 Msa0740510:intron 30.0%
TTTCAAAACAAAGAGACATG+TGG - chr5_1:59457491-59457510 None:intergenic 30.0%
! GTTTTGTACATGTTTCTCAA+AGG + chr5_1:59457661-59457680 Msa0740510:intron 30.0%
! TAAAGGGTACATATTAGCTA+AGG + chr5_1:59458024-59458043 Msa0740510:three_prime_UTR 30.0%
!! GCTTTCGCTATTTAATTTTC+TGG - chr5_1:59458302-59458321 None:intergenic 30.0%
AGAAAAACACAGAACAGAAC+AGG - chr5_1:59453690-59453709 None:intergenic 35.0%
GGAAGAAACCGATTAAAGTA+TGG - chr5_1:59453770-59453789 None:intergenic 35.0%
!! GATCCTATTTCTTTTCCTTC+AGG + chr5_1:59453818-59453837 Msa0740510:five_prime_UTR 35.0%
ATAAGGTTGGATTGAGTGTT+AGG + chr5_1:59454087-59454106 Msa0740510:intron 35.0%
TTGGGAAAGTAAGTTGTTCT+AGG + chr5_1:59454367-59454386 Msa0740510:intron 35.0%
TGGGAAAGTAAGTTGTTCTA+GGG + chr5_1:59454368-59454387 Msa0740510:intron 35.0%
TTGAATGGGGATTCAAACAA+TGG + chr5_1:59454477-59454496 Msa0740510:exon 35.0%
TGAATGGGGATTCAAACAAT+GGG + chr5_1:59454478-59454497 Msa0740510:exon 35.0%
! ACAATGGGTTCTCAAAGTAA+TGG + chr5_1:59454493-59454512 Msa0740510:CDS 35.0%
! CAATGGGTTCTCAAAGTAAT+GGG + chr5_1:59454494-59454513 Msa0740510:CDS 35.0%
GATGAGGTTAATAGTCTACT+AGG + chr5_1:59454580-59454599 Msa0740510:CDS 35.0%
ATAGTCTACTAGGAGATTTG+GGG + chr5_1:59454590-59454609 Msa0740510:CDS 35.0%
CTGAAGGAAATAAGGTTGTA+GGG + chr5_1:59454665-59454684 Msa0740510:CDS 35.0%
CTAGGTCAGAAGAAACAATA+TGG + chr5_1:59454799-59454818 Msa0740510:CDS 35.0%
AAAGTTGAGGATAGGGAAAT+GGG + chr5_1:59454832-59454851 Msa0740510:CDS 35.0%
!!! GAAGATTTTTTAGTGCAAGC+AGG + chr5_1:59454874-59454893 Msa0740510:CDS 35.0%
!! TTGAAAGCTTTGAGGAATAG+CGG - chr5_1:59454953-59454972 None:intergenic 35.0%
ACAAACAGCAAACACTAAGT+GGG - chr5_1:59455360-59455379 None:intergenic 35.0%
AACAAACAGCAAACACTAAG+TGG - chr5_1:59455361-59455380 None:intergenic 35.0%
AAGATGTGAACTCGATTCAT+TGG + chr5_1:59455578-59455597 Msa0740510:intron 35.0%
! TTTTATTCCTAGTAGGACTG+AGG - chr5_1:59455750-59455769 None:intergenic 35.0%
GTTAACATACTCACTTAGCA+GGG - chr5_1:59455890-59455909 None:intergenic 35.0%
AGTTAACATACTCACTTAGC+AGG - chr5_1:59455891-59455910 None:intergenic 35.0%
CACTACAACGTATACAGAAA+AGG - chr5_1:59456082-59456101 None:intergenic 35.0%
CCAGGAAAAAAAGGAATACT+TGG - chr5_1:59456121-59456140 None:intergenic 35.0%
!!! CCAAGTATTCCTTTTTTTCC+TGG + chr5_1:59456118-59456137 Msa0740510:intron 35.0%
!!! TGTCAATGTATTTTAGTGCC+AGG - chr5_1:59456139-59456158 None:intergenic 35.0%
GACATGTTTGTCTTAACCAA+TGG + chr5_1:59456364-59456383 Msa0740510:intron 35.0%
AACCATCATGGAAATTTCCA+GGG - chr5_1:59456510-59456529 None:intergenic 35.0%
CTACATTTGTGAAACAACTG+TGG - chr5_1:59456552-59456571 None:intergenic 35.0%
TTGGATAAGCTGCATTGAAA+AGG + chr5_1:59456693-59456712 Msa0740510:intron 35.0%
! TAGTTATTATGGTAGTGACG+CGG + chr5_1:59456867-59456886 Msa0740510:intron 35.0%
GCCTACGTGATAAGTAATAA+TGG - chr5_1:59456992-59457011 None:intergenic 35.0%
!! TCTTTTAGGTAGTTTTCCGT+TGG + chr5_1:59457032-59457051 Msa0740510:intron 35.0%
!! CTTTTAGGTAGTTTTCCGTT+GGG + chr5_1:59457033-59457052 Msa0740510:intron 35.0%
TTCTCAAGTTATGGGATAAC+GGG - chr5_1:59457071-59457090 None:intergenic 35.0%
AGGACGAAATTGATGGAAAA+AGG - chr5_1:59457526-59457545 None:intergenic 35.0%
ATTTGTGAATATGGGGAATG+AGG - chr5_1:59457890-59457909 None:intergenic 35.0%
! ATGTTGAAGTATCCTGGATA+AGG + chr5_1:59457912-59457931 Msa0740510:three_prime_UTR 35.0%
AGCTAAGGTTTGATGTTCAT+AGG + chr5_1:59458039-59458058 Msa0740510:three_prime_UTR 35.0%
ATAATCACCTCAGCTTACAA+AGG - chr5_1:59458127-59458146 None:intergenic 35.0%
TGTAAGCTGAGGTGATTATT+AGG + chr5_1:59458128-59458147 Msa0740510:three_prime_UTR 35.0%
GTAAGCTGAGGTGATTATTA+GGG + chr5_1:59458129-59458148 Msa0740510:three_prime_UTR 35.0%
GAGTGTGTTAGAATTCAGAC+AGG - chr5_1:59453649-59453668 None:intergenic 40.0%
CGAATTTCGACCAAATCAAG+TGG - chr5_1:59453714-59453733 None:intergenic 40.0%
! ATGGGGTTGATCATGATTTG+TGG + chr5_1:59453932-59453951 Msa0740510:intron 40.0%
ATGTTGTGTTACATCAGCTG+GGG - chr5_1:59454056-59454075 None:intergenic 40.0%
CATGTTGTGTTACATCAGCT+GGG - chr5_1:59454057-59454076 None:intergenic 40.0%
CAGCTGATGTAACACAACAT+GGG + chr5_1:59454056-59454075 Msa0740510:intron 40.0%
AGCTGATGTAACACAACATG+GGG + chr5_1:59454057-59454076 Msa0740510:intron 40.0%
GGATTGAGTGTTAGGTTTGT+TGG + chr5_1:59454095-59454114 Msa0740510:intron 40.0%
!! AAGAATCTAGGCTTTGGACT+TGG + chr5_1:59454148-59454167 Msa0740510:intron 40.0%
GTATGGTCTAACTCTTGATG+AGG + chr5_1:59454564-59454583 Msa0740510:CDS 40.0%
TCAAGATTCATGCTCCCTAA+CGG - chr5_1:59454619-59454638 None:intergenic 40.0%
GCTGAAGGAAATAAGGTTGT+AGG + chr5_1:59454664-59454683 Msa0740510:CDS 40.0%
AGGAAATAAGGTTGTAGGGA+TGG + chr5_1:59454669-59454688 Msa0740510:CDS 40.0%
! ATTGTTTCTTCTGACCTAGC+TGG - chr5_1:59454798-59454817 None:intergenic 40.0%
ACGATGTGAAAGTTGAGGAT+AGG + chr5_1:59454824-59454843 Msa0740510:CDS 40.0%
CGATGTGAAAGTTGAGGATA+GGG + chr5_1:59454825-59454844 Msa0740510:CDS 40.0%
GAAAGTTGAGGATAGGGAAA+TGG + chr5_1:59454831-59454850 Msa0740510:CDS 40.0%
! GTTTTCGGTTGAAAGCTTTG+AGG - chr5_1:59454961-59454980 None:intergenic 40.0%
CTTTCAACCGAAAACAAGCT+TGG + chr5_1:59454966-59454985 Msa0740510:CDS 40.0%
!! GAGGATACCAAGCTTGTTTT+CGG - chr5_1:59454976-59454995 None:intergenic 40.0%
AGTTTGTCGGATGCAAAATC+AGG + chr5_1:59455009-59455028 Msa0740510:CDS 40.0%
ATGCAAAATCAGGTCGCAAA+AGG + chr5_1:59455019-59455038 Msa0740510:CDS 40.0%
TGCAAAATCAGGTCGCAAAA+GGG + chr5_1:59455020-59455039 Msa0740510:CDS 40.0%
AAAGCCTTCTCATATGCATC+CGG - chr5_1:59455051-59455070 None:intergenic 40.0%
!! CATATGAGAAGGCTTTGGAA+AGG + chr5_1:59455055-59455074 Msa0740510:CDS 40.0%
! CCTTGGTAACCAGTTCATTA+TGG - chr5_1:59455269-59455288 None:intergenic 40.0%
CCATAATGAACTGGTTACCA+AGG + chr5_1:59455266-59455285 Msa0740510:CDS 40.0%
TATGCAGCTCAAGAAAGAGA+AGG + chr5_1:59455311-59455330 Msa0740510:CDS 40.0%
AAACAGCAAACACTAAGTGG+GGG - chr5_1:59455358-59455377 None:intergenic 40.0%
CAAACAGCAAACACTAAGTG+GGG - chr5_1:59455359-59455378 None:intergenic 40.0%
GAAATCAGAATCACAGTGTG+AGG + chr5_1:59455520-59455539 Msa0740510:intron 40.0%
AACTCGATTCATTGGATGTG+AGG + chr5_1:59455586-59455605 Msa0740510:intron 40.0%
GAAACTAGGAAATTCCTCCA+AGG + chr5_1:59455677-59455696 Msa0740510:intron 40.0%
TTGAGAAGGTCTGAAGGAAT+TGG - chr5_1:59455781-59455800 None:intergenic 40.0%
CCATATTTGAGAAGGTCTGA+AGG - chr5_1:59455787-59455806 None:intergenic 40.0%
CCTTCAGACCTTCTCAAATA+TGG + chr5_1:59455784-59455803 Msa0740510:CDS 40.0%
CACTCAGTCCATATTTGAGA+AGG - chr5_1:59455795-59455814 None:intergenic 40.0%
AAGAACCACTCCAAGTTTAG+AGG + chr5_1:59455828-59455847 Msa0740510:CDS 40.0%
ATGGAGTGTACCTCTAAACT+TGG - chr5_1:59455841-59455860 None:intergenic 40.0%
!! TTCTCTGTTTCTGCTGTTCA+TGG - chr5_1:59455919-59455938 None:intergenic 40.0%
GAATACAGTACAAGACTCGA+AGG - chr5_1:59456314-59456333 None:intergenic 40.0%
TGGTTAAGACAAACATGTCC+AGG - chr5_1:59456363-59456382 None:intergenic 40.0%
CAAAGATCCCTACAAAACGA+AGG - chr5_1:59456455-59456474 None:intergenic 40.0%
ATCCCTGGAAATTTCCATGA+TGG + chr5_1:59456505-59456524 Msa0740510:intron 40.0%
CAACCATCATGGAAATTTCC+AGG - chr5_1:59456511-59456530 None:intergenic 40.0%
ATTTCCATGATGGTTGTCCA+TGG + chr5_1:59456515-59456534 Msa0740510:intron 40.0%
CATTTGTGAAACAACTGTGG+AGG - chr5_1:59456549-59456568 None:intergenic 40.0%
ATTGGTGAATGATGAGAGAG+AGG + chr5_1:59456963-59456982 Msa0740510:intron 40.0%
TATGCAAAAAACTGAAGGGC+TGG - chr5_1:59457193-59457212 None:intergenic 40.0%
! GTTGTTTAGGCTCTTGTTGT+TGG + chr5_1:59457274-59457293 Msa0740510:intron 40.0%
GTGATACAGGACGAAATTGA+TGG - chr5_1:59457533-59457552 None:intergenic 40.0%
AGATGATGACTCAGTGATAC+AGG - chr5_1:59457546-59457565 None:intergenic 40.0%
ACTCTGTAAGAACAGAAGCA+CGG - chr5_1:59457587-59457606 None:intergenic 40.0%
TTAGGTTCAGGTGATGATTC+AGG - chr5_1:59457808-59457827 None:intergenic 40.0%
ACTCTTCGAAGACGGTATTT+AGG - chr5_1:59457826-59457845 None:intergenic 40.0%
CAGAACTTACTCTTCGAAGA+CGG - chr5_1:59457834-59457853 None:intergenic 40.0%
AAGTTATGCTCTCCTTATCC+AGG - chr5_1:59457927-59457946 None:intergenic 40.0%
! GAGAGCATAACTTCATTGCA+CGG + chr5_1:59457934-59457953 Msa0740510:three_prime_UTR 40.0%
GTTTGATGTTCATAGGCTTC+AGG + chr5_1:59458046-59458065 Msa0740510:three_prime_UTR 40.0%
AAGATTGCCTTTGTAAGCTG+AGG + chr5_1:59458117-59458136 Msa0740510:three_prime_UTR 40.0%
CCATGTTGTGTTACATCAGC+TGG - chr5_1:59454058-59454077 None:intergenic 45.0%
CCAGCTGATGTAACACAACA+TGG + chr5_1:59454055-59454074 Msa0740510:intron 45.0%
GCTGATGTAACACAACATGG+GGG + chr5_1:59454058-59454077 Msa0740510:intron 45.0%
ACATGAATCGGTTGCACCTA+GGG - chr5_1:59454208-59454227 None:intergenic 45.0%
! GTGCAACCGATTCATGTGTT+GGG + chr5_1:59454211-59454230 Msa0740510:intron 45.0%
! AACCGATTCATGTGTTGGGT+TGG + chr5_1:59454215-59454234 Msa0740510:intron 45.0%
GACCAACCCAACACATGAAT+CGG - chr5_1:59454220-59454239 None:intergenic 45.0%
!! TGGGTTGGTCTGACTTCTAT+TGG + chr5_1:59454230-59454249 Msa0740510:intron 45.0%
!! GTAAGTTGTTCTAGGGCTTG+TGG + chr5_1:59454375-59454394 Msa0740510:intron 45.0%
!! TTGTGGTTCTGTGGTTTGGT+TGG + chr5_1:59454392-59454411 Msa0740510:intron 45.0%
!! GCACTGATTGTGATGATGAC+AGG + chr5_1:59454431-59454450 Msa0740510:intron 45.0%
TGGGCAACAGTCTCATTTAC+AGG + chr5_1:59454513-59454532 Msa0740510:CDS 45.0%
ACGAGCTTCTTCAGAATGTG+TGG + chr5_1:59454638-59454657 Msa0740510:CDS 45.0%
! GTGGACTGCTGAAGGAAATA+AGG + chr5_1:59454657-59454676 Msa0740510:CDS 45.0%
CGTCATCGTCTTCTCTTCAA+CGG + chr5_1:59454707-59454726 Msa0740510:CDS 45.0%
GTATGGAGAGAAATCCAGCT+AGG + chr5_1:59454781-59454800 Msa0740510:CDS 45.0%
TGGAGACGATGTGAAAGTTG+AGG + chr5_1:59454819-59454838 Msa0740510:CDS 45.0%
TGGAGCTTCTATTAGTCCGA+CGG + chr5_1:59454906-59454925 Msa0740510:CDS 45.0%
GGATGCATATGAGAAGGCTT+TGG + chr5_1:59455050-59455069 Msa0740510:CDS 45.0%
!! ATGAGAAGGCTTTGGAAAGG+AGG + chr5_1:59455058-59455077 Msa0740510:CDS 45.0%
CACGTGCAAGAAAACAGGTT+TGG + chr5_1:59455121-59455140 Msa0740510:intron 45.0%
GCAGGCTTACCATAATGAAC+TGG + chr5_1:59455257-59455276 Msa0740510:intron 45.0%
CTGTTCTAGCAGAGTAACCT+TGG - chr5_1:59455286-59455305 None:intergenic 45.0%
GTGTACCTCTAAACTTGGAG+TGG - chr5_1:59455836-59455855 None:intergenic 45.0%
! CAAAACGAAGGCGTGCATAA+AGG - chr5_1:59456443-59456462 None:intergenic 45.0%
! TATGCACGCCTTCGTTTTGT+AGG + chr5_1:59456444-59456463 Msa0740510:intron 45.0%
! ATGCACGCCTTCGTTTTGTA+GGG + chr5_1:59456445-59456464 Msa0740510:intron 45.0%
TGATCCATGGACAACCATCA+TGG - chr5_1:59456522-59456541 None:intergenic 45.0%
TGATGGTTGTCCATGGATCA+AGG + chr5_1:59456522-59456541 Msa0740510:intron 45.0%
! GTCAGCGCTGTATGTTGTTT+AGG + chr5_1:59457261-59457280 Msa0740510:intron 45.0%
GTGTATTCTTTCCCTTGCAC+AGG + chr5_1:59457762-59457781 Msa0740510:intron 45.0%
! CGAAGACGGTATTTAGGTTC+AGG - chr5_1:59457820-59457839 None:intergenic 45.0%
GCTGGTCACTTGTCAGAAAA+GGG - chr5_1:59457857-59457876 None:intergenic 45.0%
TGCTGGTCACTTGTCAGAAA+AGG - chr5_1:59457858-59457877 None:intergenic 45.0%
GAATGAGGAAACTTCACTGC+TGG - chr5_1:59457875-59457894 None:intergenic 45.0%
! ACTATAGCGAAAGCACACCA+GGG - chr5_1:59457969-59457988 None:intergenic 45.0%
! TACTATAGCGAAAGCACACC+AGG - chr5_1:59457970-59457989 None:intergenic 45.0%
CAGGAAAGATTTGAGTCTCG+TGG + chr5_1:59458065-59458084 Msa0740510:three_prime_UTR 45.0%
GAAAGATTTGAGTCTCGTGG+TGG + chr5_1:59458068-59458087 Msa0740510:three_prime_UTR 45.0%
GAGGTGATTATTAGGGAGTC+TGG + chr5_1:59458136-59458155 Msa0740510:three_prime_UTR 45.0%
!! AGGGAGTCTGGTTCTTGAAA+AGG + chr5_1:59458148-59458167 Msa0740510:three_prime_UTR 45.0%
CAACATGGGGGCTTGCAATA+AGG + chr5_1:59454070-59454089 Msa0740510:intron 50.0%
ATGGGGGCTTGCAATAAGGT+TGG + chr5_1:59454074-59454093 Msa0740510:intron 50.0%
CATGAATCGGTTGCACCTAG+GGG - chr5_1:59454207-59454226 None:intergenic 50.0%
CACATGAATCGGTTGCACCT+AGG - chr5_1:59454209-59454228 None:intergenic 50.0%
! GGTGCAACCGATTCATGTGT+TGG + chr5_1:59454210-59454229 Msa0740510:intron 50.0%
!! TTCTAGGGCTTGTGGTTCTG+TGG + chr5_1:59454383-59454402 Msa0740510:intron 50.0%
GAGATTTGGGGAAGCCGTTA+GGG + chr5_1:59454602-59454621 Msa0740510:CDS 50.0%
! CAGAATGTGTGGACTGCTGA+AGG + chr5_1:59454649-59454668 Msa0740510:CDS 50.0%
ATCGTCTTCTCTTCAACGGC+AGG + chr5_1:59454711-59454730 Msa0740510:CDS 50.0%
! TCGTGCTTTGAGTGGGAAGA+CGG + chr5_1:59454750-59454769 Msa0740510:CDS 50.0%
GGAAGACGGTGGATGATGTA+TGG + chr5_1:59454764-59454783 Msa0740510:CDS 50.0%
GAGGATAGGGAAATGGGTCT+CGG + chr5_1:59454838-59454857 Msa0740510:CDS 50.0%
AGCTTCTATTAGTCCGACGG+TGG + chr5_1:59454909-59454928 Msa0740510:CDS 50.0%
GCTTCTATTAGTCCGACGGT+GGG + chr5_1:59454910-59454929 Msa0740510:CDS 50.0%
CTTCTATTAGTCCGACGGTG+GGG + chr5_1:59454911-59454930 Msa0740510:CDS 50.0%
TGCTCCGGATGCATATGAGA+AGG + chr5_1:59455044-59455063 Msa0740510:CDS 50.0%
! CTTTGGAAAGGAGGCTGAGA+AGG + chr5_1:59455067-59455086 Msa0740510:CDS 50.0%
! TTTTCTTGCACGTGAACGCG+CGG - chr5_1:59455115-59455134 None:intergenic 50.0%
GCGTTCACGTGCAAGAAAAC+AGG + chr5_1:59455116-59455135 Msa0740510:CDS 50.0%
CTAGTAGGACTGAGGTCTGA+AGG - chr5_1:59455742-59455761 None:intergenic 50.0%
CTTCAGACCTCAGTCCTACT+AGG + chr5_1:59455740-59455759 Msa0740510:CDS 50.0%
! AGAGGTACACTCCATGTGCT+AGG + chr5_1:59455846-59455865 Msa0740510:intron 50.0%
GCAACATCTTGCCTAGCACA+TGG - chr5_1:59455860-59455879 None:intergenic 50.0%
GGGACTGCTTAAAGTCCCAA+CGG - chr5_1:59457051-59457070 None:intergenic 50.0%
CTGCTCAAACTCCTGTGCAA+GGG - chr5_1:59457776-59457795 None:intergenic 50.0%
CTTGCACAGGAGTTTGAGCA+GGG + chr5_1:59457775-59457794 Msa0740510:intron 50.0%
TTGCACAGGAGTTTGAGCAG+GGG + chr5_1:59457776-59457795 Msa0740510:intron 50.0%
! CTATAGCGAAAGCACACCAG+GGG - chr5_1:59457968-59457987 None:intergenic 50.0%
!! AGGCTTTGGACTTGGAAGCG+CGG + chr5_1:59454156-59454175 Msa0740510:intron 55.0%
GTCGTAGGTTCGAATCCCCT+AGG + chr5_1:59454189-59454208 Msa0740510:intron 55.0%
GGTCTGACTTCTATTGGCCC+CGG + chr5_1:59454236-59454255 Msa0740510:intron 55.0%
!! ATTGGTCCCCCCGGATTAGT+CGG + chr5_1:59454274-59454293 Msa0740510:intron 55.0%
CAAAGACCGACTAATCCGGG+GGG - chr5_1:59454283-59454302 None:intergenic 55.0%
CCAAAGACCGACTAATCCGG+GGG - chr5_1:59454284-59454303 None:intergenic 55.0%
CCCAAAGACCGACTAATCCG+GGG - chr5_1:59454285-59454304 None:intergenic 55.0%
!! CCCCGGATTAGTCGGTCTTT+GGG + chr5_1:59454282-59454301 Msa0740510:intron 55.0%
GCCCAAAGACCGACTAATCC+GGG - chr5_1:59454286-59454305 None:intergenic 55.0%
GGCCCAAAGACCGACTAATC+CGG - chr5_1:59454287-59454306 None:intergenic 55.0%
!! GGATTAGTCGGTCTTTGGGC+CGG + chr5_1:59454286-59454305 Msa0740510:intron 55.0%
! GGGCTTGTGGTTCTGTGGTT+TGG + chr5_1:59454388-59454407 Msa0740510:intron 55.0%
GGAGATTTGGGGAAGCCGTT+AGG + chr5_1:59454601-59454620 Msa0740510:CDS 55.0%
TGTAGGGATGGAGAGTGAGC+AGG + chr5_1:59454681-59454700 Msa0740510:CDS 55.0%
ACGGCAGGCTAGTATGACGT+TGG + chr5_1:59454726-59454745 Msa0740510:CDS 55.0%
!! ACGTTGGCTCGTGCTTTGAG+TGG + chr5_1:59454742-59454761 Msa0740510:CDS 55.0%
!! CGTTGGCTCGTGCTTTGAGT+GGG + chr5_1:59454743-59454762 Msa0740510:CDS 55.0%
! TGCTTTGAGTGGGAAGACGG+TGG + chr5_1:59454753-59454772 Msa0740510:CDS 55.0%
GATAGGGAAATGGGTCTCGG+TGG + chr5_1:59454841-59454860 Msa0740510:CDS 55.0%
! GTGCAAGCAGGGCTTTTTGC+TGG + chr5_1:59454886-59454905 Msa0740510:CDS 55.0%
TATTAGTCCGACGGTGGGGT+TGG + chr5_1:59454915-59454934 Msa0740510:CDS 55.0%
ATTGCATCCAACCCCACCGT+CGG - chr5_1:59454925-59454944 None:intergenic 55.0%
AGGTCGCAAAAGGGATGCTC+CGG + chr5_1:59455029-59455048 Msa0740510:CDS 55.0%
CTGTGGAGGACCTTGATCCA+TGG - chr5_1:59456535-59456554 None:intergenic 55.0%
CCTGCTCAAACTCCTGTGCA+AGG - chr5_1:59457777-59457796 None:intergenic 55.0%
CCTTGCACAGGAGTTTGAGC+AGG + chr5_1:59457774-59457793 Msa0740510:intron 55.0%
! TTGGAAGCGCGGTGCTCTGT+AGG + chr5_1:59454167-59454186 Msa0740510:intron 60.0%
CTTCTATTGGCCCCGGCTAG+TGG + chr5_1:59454243-59454262 Msa0740510:intron 60.0%
TATTGGCCCCGGCTAGTGGA+TGG + chr5_1:59454247-59454266 Msa0740510:intron 60.0%
AATCCCGCCATCCACTAGCC+GGG - chr5_1:59454257-59454276 None:intergenic 60.0%
CAATCCCGCCATCCACTAGC+CGG - chr5_1:59454258-59454277 None:intergenic 60.0%
!! CCCCCGGATTAGTCGGTCTT+TGG + chr5_1:59454281-59454300 Msa0740510:intron 60.0%
CGGTCTTTGGGCCGGATACT+TGG + chr5_1:59454294-59454313 Msa0740510:intron 60.0%
GGGTCTCGGTGGTACGACTT+TGG + chr5_1:59454852-59454871 Msa0740510:CDS 60.0%
GACGGTGGGGTTGGATGCAA+TGG + chr5_1:59454924-59454943 Msa0740510:CDS 60.0%
CGCGGTGCTCTGTAGGTCGT+AGG + chr5_1:59454174-59454193 Msa0740510:intron 65.0%
ATCCCGCCATCCACTAGCCG+GGG - chr5_1:59454256-59454275 None:intergenic 65.0%
!! CGGCTAGTGGATGGCGGGAT+TGG + chr5_1:59454256-59454275 Msa0740510:intron 65.0%
!! TTGCACGGTGTTGCTGCCCC+TGG + chr5_1:59457949-59457968 Msa0740510:three_prime_UTR 65.0%
! TGGCCCCGGCTAGTGGATGG+CGG + chr5_1:59454250-59454269 Msa0740510:intron 70.0%
!! GATGGCGGGATTGGTCCCCC+CGG + chr5_1:59454265-59454284 Msa0740510:intron 70.0%
! GGCCCCGGCTAGTGGATGGC+GGG + chr5_1:59454251-59454270 Msa0740510:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59453542 59458335 59453542 ID=Msa0740510;Name=Msa0740510
chr5_1 mRNA 59453542 59458335 59453542 ID=Msa0740510-mRNA-1;Parent=Msa0740510;Name=Msa0740510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=326|0.5|0.8|0.8|0.75|0.6|5|471|308
chr5_1 exon 59453542 59453839 59453542 ID=Msa0740510-mRNA-1:exon:17115;Parent=Msa0740510-mRNA-1
chr5_1 exon 59454453 59455137 59454453 ID=Msa0740510-mRNA-1:exon:17116;Parent=Msa0740510-mRNA-1
chr5_1 exon 59455261 59455332 59455261 ID=Msa0740510-mRNA-1:exon:17117;Parent=Msa0740510-mRNA-1
chr5_1 exon 59455733 59455849 59455733 ID=Msa0740510-mRNA-1:exon:17118;Parent=Msa0740510-mRNA-1
chr5_1 exon 59457784 59458335 59457784 ID=Msa0740510-mRNA-1:exon:17119;Parent=Msa0740510-mRNA-1
chr5_1 five_prime_UTR 59453542 59453839 59453542 ID=Msa0740510-mRNA-1:five_prime_utr;Parent=Msa0740510-mRNA-1
chr5_1 five_prime_UTR 59454453 59454480 59454453 ID=Msa0740510-mRNA-1:five_prime_utr;Parent=Msa0740510-mRNA-1
chr5_1 CDS 59454481 59455137 59454481 ID=Msa0740510-mRNA-1:cds;Parent=Msa0740510-mRNA-1
chr5_1 CDS 59455261 59455332 59455261 ID=Msa0740510-mRNA-1:cds;Parent=Msa0740510-mRNA-1
chr5_1 CDS 59455733 59455849 59455733 ID=Msa0740510-mRNA-1:cds;Parent=Msa0740510-mRNA-1
chr5_1 CDS 59457784 59457864 59457784 ID=Msa0740510-mRNA-1:cds;Parent=Msa0740510-mRNA-1
chr5_1 three_prime_UTR 59457865 59458335 59457865 ID=Msa0740510-mRNA-1:three_prime_utr;Parent=Msa0740510-mRNA-1
Gene Sequence

>Msa0740510

ATGGGGATTCAAACAATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATCAGTTAGTTAAGCAAAATTCATGGTATGGTCTAACTCTTGATGAGGTTAATAGTCTACTAGGAGATTTGGGGAAGCCGTTAGGGAGCATGAATCTTGACGAGCTTCTTCAGAATGTGTGGACTGCTGAAGGAAATAAGGTTGTAGGGATGGAGAGTGAGCAGGTTTCGTCATCGTCTTCTCTTCAACGGCAGGCTAGTATGACGTTGGCTCGTGCTTTGAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATATGGAGACGATGTGAAAGTTGAGGATAGGGAAATGGGTCTCGGTGGTACGACTTTGGAAGATTTTTTAGTGCAAGCAGGGCTTTTTGCTGGAGCTTCTATTAGTCCGACGGTGGGGTTGGATGCAATGGATACCGCTATTCCTCAAAGCTTTCAACCGAAAACAAGCTTGGTATCCTCTTCTTCAATTAGTAGTTTGTCGGATGCAAAATCAGGTCGCAAAAGGGATGCTCCGGATGCATATGAGAAGGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCCGCGCGTTCACGTGCAAGAAAACAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCTGCTAGAACAGCAAAATATGCAGCTCAAGAAAGAGAAGGAATTTCCTTCAGACCTCAGTCCTACTAGGAATAAAACAGAAAGGCCAATTCCTTCAGACCTTCTCAAATATGGACTGAGTGACAGAGTGAAGCAAAGAACCACTCCAAGTTTAGAGGAGTTTGAGCAGGGGCTACAACCTGAATCATCACCTGAACCTAAATACCGTCTTCGAAGAGTAAGTTCTGCCCTTTTCTGA
Protein sequence

>Msa0740510

MGIQTMGSQSNGQQSHLQANQLVKQNSWYGLTLDEVNSLLGDLGKPLGSMNLDELLQNVWTAEGNKVVGMESEQVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKVEDREMGLGGTTLEDFLVQAGLFAGASISPTVGLDAMDTAIPQSFQPKTSLVSSSSISSLSDAKSGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNMQLKKEKEFPSDLSPTRNKTERPIPSDLLKYGLSDRVKQRTTPSLEEFEQGLQPESSPEPKYRLRRVSSALF*