AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869100 MtrunA17_Chr6g0450151 91.222 900 65 4 1 889 1 897 0.0 1603
Msa0869100 MtrunA17_Chr6g0450071 80.925 692 62 6 1 682 1 632 0.0 1063
Msa0869100 MtrunA17_Chr6g0450071 82.609 46 8 0 258 303 631 676 2.93e-17 86.7
Msa0869100 MtrunA17_Chr1g0181651 30.398 352 181 13 129 449 165 483 2.44e-30 129
Msa0869100 MtrunA17_Chr1g0185901 36.500 200 121 4 268 465 362 557 3.28e-30 129
Msa0869100 MtrunA17_Chr2g0333291 30.743 296 160 9 267 546 257 523 5.06e-28 121
Msa0869100 MtrunA17_Chr4g0018601 33.058 242 152 6 267 500 313 552 3.45e-26 114
Msa0869100 MtrunA17_Chr1g0170751 35.263 190 117 5 264 449 286 473 8.11e-26 114
Msa0869100 MtrunA17_Chr2g0333801 35.484 155 77 3 267 420 6 138 1.77e-21 91.3
Msa0869100 MtrunA17_Chr1g0192031 38.650 163 77 7 268 418 74 225 2.48e-21 98.2
Msa0869100 MtrunA17_Chr7g0272631 45.556 90 48 1 268 356 87 176 5.78e-21 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869100 AT3G27860.2 32.427 478 242 17 268 725 61 477 4.15e-53 197
Msa0869100 AT3G27860.1 32.427 478 242 17 268 725 61 477 4.15e-53 197
Msa0869100 AT3G09670.2 37.569 181 109 3 272 449 201 380 1.23e-26 117
Msa0869100 AT3G09670.1 37.569 181 109 3 272 449 201 380 1.23e-26 117
Msa0869100 AT5G02950.1 30.147 272 171 6 176 439 8 268 8.77e-26 114
Msa0869100 AT5G02950.2 30.147 272 171 6 176 439 8 268 8.77e-26 114
Msa0869100 AT5G27650.1 35.366 164 82 5 268 418 171 323 5.44e-21 99.8
Msa0869100 AT3G05430.2 37.226 137 72 4 268 400 133 259 2.78e-20 97.4
Msa0869100 AT3G05430.1 37.226 137 72 4 268 400 133 259 2.93e-20 97.4
Msa0869100 AT3G48187.1 28.061 196 109 4 263 449 101 273 4.16e-14 77.0

Find 198 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.111377 6_1:-2921103 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6_1:-2920158 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6_1:-2920614 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6_1:-2922007 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6_1:-2921862 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6_1:+2921147 Msa0869100:CDS
CTTTCTCATCATCTGGTGTT+TGG 0.275619 6_1:-2921651 None:intergenic
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6_1:-2922076 None:intergenic
CTGAATCGATGGAACCATTT+GGG 0.308664 6_1:+2919655 Msa0869100:CDS
GATTGATCAAGCTCAGATTC+TGG 0.308922 6_1:-2921889 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6_1:+2920557 Msa0869100:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6_1:+2922248 Msa0869100:CDS
TTCTGCTTTCTTCTACGGTT+TGG 0.326584 6_1:-2921127 None:intergenic
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6_1:-2920266 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6_1:-2921658 None:intergenic
GGATAGTGAGGAGGGAGAAA+AGG 0.332631 6_1:+2920205 Msa0869100:CDS
TATTGATATTGCTAGTGTTC+TGG 0.336830 6_1:+2920898 Msa0869100:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.342327 6_1:-2920062 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6_1:-2920815 None:intergenic
ACTGATTCTGAAGTGAATAA+TGG 0.349870 6_1:+2919939 Msa0869100:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6_1:-2921685 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6_1:-2922225 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6_1:+2919693 Msa0869100:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6_1:-2920999 None:intergenic
AATGATTCCCTGGTGAATAA+TGG 0.377716 6_1:+2919813 Msa0869100:CDS
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6_1:+2919686 Msa0869100:CDS
GATAGTGAGGAGGGAGAAAA+GGG 0.387448 6_1:+2920206 Msa0869100:CDS
CTGATTCTGAAGTGAATAAT+GGG 0.387661 6_1:+2919940 Msa0869100:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6_1:-2921748 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6_1:+2921304 Msa0869100:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6_1:+2921148 Msa0869100:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6_1:-2921678 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6_1:+2921210 Msa0869100:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6_1:+2920725 Msa0869100:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6_1:-2922013 None:intergenic
ATGATTCCCTGGTGAATAAT+GGG 0.416782 6_1:+2919814 Msa0869100:CDS
AGCTGGAAATATTGAAGGCT+TGG 0.416986 6_1:+2920921 Msa0869100:CDS
GTGTCTTCTTTGTTGAAAAC+GGG 0.419257 6_1:+2919963 Msa0869100:CDS
AATGAGAAGGATAGTGAGGA+GGG 0.420006 6_1:+2920197 Msa0869100:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6_1:+2920478 Msa0869100:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6_1:-2922110 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6_1:-2922081 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6_1:+2922165 Msa0869100:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6_1:+2920992 Msa0869100:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6_1:+2919654 Msa0869100:CDS
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6_1:+2921462 Msa0869100:CDS
GGTGTCTTCTTTGTTGAAAA+CGG 0.434197 6_1:+2919962 Msa0869100:CDS
GCAGGAGAAGAATGAGCTTA+AGG 0.435652 6_1:+2919722 Msa0869100:CDS
GTGGAAAAGAAAGCTGTGAC+AGG 0.440805 6_1:+2921350 Msa0869100:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6_1:+2920838 Msa0869100:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6_1:+2922006 Msa0869100:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6_1:-2920998 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6_1:+2921919 Msa0869100:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6_1:+2921097 Msa0869100:CDS
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6_1:+2920101 Msa0869100:CDS
TTTGTGAAGGGAAGAGGTGC+TGG 0.451932 6_1:+2921553 Msa0869100:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6_1:-2921060 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6_1:-2921059 None:intergenic
AGGGGCAAATCGCAGCATTC+AGG 0.456509 6_1:+2921370 Msa0869100:CDS
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6_1:-2920657 None:intergenic
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6_1:+2921850 Msa0869100:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6_1:+2921091 Msa0869100:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6_1:+2920477 Msa0869100:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6_1:+2920820 Msa0869100:CDS
TATTGCTAGTGTTCTGGAGC+TGG 0.469362 6_1:+2920904 Msa0869100:CDS
TCTGGAGCTGGAAATATTGA+AGG 0.471485 6_1:+2920916 Msa0869100:CDS
TTTGAAGGAGAATGACTCTC+AGG 0.472324 6_1:+2919911 Msa0869100:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6_1:+2920473 Msa0869100:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6_1:-2919669 None:intergenic
GTCTATTGAGGTACCAATAG+TGG 0.480190 6_1:+2920253 Msa0869100:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6_1:+2920973 Msa0869100:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6_1:+2921185 Msa0869100:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6_1:+2920985 Msa0869100:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6_1:-2921677 None:intergenic
CTGGTTGCAATTAAGTCAAA+GGG 0.493527 6_1:+2921229 Msa0869100:CDS
ACTTTGATGGAACATTTGCT+TGG 0.495401 6_1:+2920570 Msa0869100:CDS
TCTGGTTGCAATTAAGTCAA+AGG 0.495485 6_1:+2921228 Msa0869100:CDS
TCTGAAGGAGAATGATTCTC+AGG 0.496504 6_1:+2919785 Msa0869100:CDS
ATGTTGATATTGAAGTGAAC+GGG 0.496688 6_1:+2920084 Msa0869100:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6_1:+2920721 Msa0869100:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6_1:+2921844 Msa0869100:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.499809 6_1:+2920145 Msa0869100:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6_1:+2920049 Msa0869100:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6_1:+2920329 Msa0869100:CDS
AGAGACTTTGTGAAGGGAAG+AGG 0.502911 6_1:+2921547 Msa0869100:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6_1:+2920680 Msa0869100:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6_1:-2921703 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6_1:+2922170 Msa0869100:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6_1:+2920541 Msa0869100:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6_1:+2920726 Msa0869100:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6_1:+2921606 Msa0869100:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6_1:+2920361 Msa0869100:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6_1:+2922119 Msa0869100:CDS
GATGAATGAGAAGGATAGTG+AGG 0.516877 6_1:+2920193 Msa0869100:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6_1:+2920757 Msa0869100:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6_1:+2920727 Msa0869100:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6_1:-2921055 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6_1:+2920097 Msa0869100:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6_1:+2921436 Msa0869100:CDS
AGATGTTGATGCAAAAGATA+AGG 0.523242 6_1:+2921180 Msa0869100:CDS
GAATGAGAAGGATAGTGAGG+AGG 0.523714 6_1:+2920196 Msa0869100:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6_1:+2921418 Msa0869100:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6_1:+2922005 Msa0869100:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6_1:+2921463 Msa0869100:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6_1:-2921067 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6_1:+2921328 Msa0869100:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6_1:+2922007 Msa0869100:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6_1:+2921437 Msa0869100:CDS
GACCGAGGTTTCGGTTCTGA+AGG 0.547258 6_1:+2919770 Msa0869100:CDS
TCAGGTTGTGAATGATTCCC+TGG 0.547979 6_1:+2919803 Msa0869100:CDS
AATGTTGATATTGAAGTGAA+CGG 0.548378 6_1:+2920083 Msa0869100:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6_1:+2920221 Msa0869100:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6_1:-2920599 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6_1:+2920724 Msa0869100:CDS
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6_1:-2922117 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6_1:-2922211 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6_1:+2921057 Msa0869100:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6_1:+2920684 Msa0869100:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6_1:+2920305 Msa0869100:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6_1:-2922145 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6_1:+2921149 Msa0869100:CDS
CTCCTTCAGAACCGAAACCT+CGG 0.563807 6_1:-2919772 None:intergenic
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6_1:+2921740 Msa0869100:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6_1:-2920509 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6_1:+2919704 Msa0869100:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6_1:+2920411 Msa0869100:CDS
TCAATCAGAGACTTTGTGAA+GGG 0.572253 6_1:+2921541 Msa0869100:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6_1:+2920379 Msa0869100:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6_1:+2921186 Msa0869100:CDS
TTGAAACTCGAGGAGAAAGC+AGG 0.575194 6_1:-2921576 None:intergenic
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6_1:+2920984 Msa0869100:CDS
GGAAAAGAAAGCTGTGACAG+GGG 0.576442 6_1:+2921352 Msa0869100:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6_1:+2920100 Msa0869100:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6_1:-2920595 None:intergenic
TGTGAGAAGAAAGTCAAAGA+AGG 0.580505 6_1:+2920011 Msa0869100:CDS
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6_1:+2921939 Msa0869100:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6_1:+2922240 Msa0869100:CDS
AAGACACCCCATTATTCACC+AGG 0.585252 6_1:-2919821 None:intergenic
TGGGAAGATCGAGACTATTG+AGG 0.585945 6_1:+2920349 Msa0869100:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6_1:+2920685 Msa0869100:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6_1:+2920330 Msa0869100:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6_1:+2921043 Msa0869100:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6_1:+2920222 Msa0869100:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6_1:+2919656 Msa0869100:CDS
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6_1:+2921744 Msa0869100:CDS
CGATGTTGAAATGACTGAGA+AGG 0.596335 6_1:+2920292 Msa0869100:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6_1:-2920857 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6_1:-2921925 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6_1:+2920502 Msa0869100:CDS
CTGTTATACTTTGAAACTCG+AGG 0.601039 6_1:-2921586 None:intergenic
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6_1:-2920669 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6_1:-2921529 None:intergenic
TTCAATCAGAGACTTTGTGA+AGG 0.604784 6_1:+2921540 Msa0869100:CDS
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6_1:+2920691 Msa0869100:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6_1:-2920983 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6_1:+2920629 Msa0869100:CDS
TGGAAAAGAAAGCTGTGACA+GGG 0.618152 6_1:+2921351 Msa0869100:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6_1:-2920482 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6_1:+2921808 Msa0869100:CDS
TGATATTGAAGTGAACGGGA+AGG 0.622379 6_1:+2920088 Msa0869100:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6_1:-2920491 None:intergenic
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6_1:+2922233 Msa0869100:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6_1:+2922221 Msa0869100:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6_1:+2921412 Msa0869100:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6_1:+2920364 Msa0869100:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6_1:+2920241 Msa0869100:CDS
TGTGGTTGATACTGAATCGA+TGG 0.639717 6_1:+2919644 Msa0869100:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6_1:+2919975 Msa0869100:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6_1:+2921745 Msa0869100:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6_1:-2921526 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6_1:-2922126 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6_1:+2920676 Msa0869100:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6_1:+2921854 Msa0869100:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6_1:+2920256 Msa0869100:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6_1:+2921331 Msa0869100:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6_1:+2921423 Msa0869100:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6_1:+2921044 Msa0869100:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6_1:-2922121 None:intergenic
GTAATGAGAACATCAGCGGT+GGG 0.671348 6_1:+2921413 Msa0869100:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6_1:+2921375 Msa0869100:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6_1:+2921743 Msa0869100:CDS
TGATGTTGAGATGAATGAGA+AGG 0.677474 6_1:+2920184 Msa0869100:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6_1:+2922120 Msa0869100:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6_1:+2920823 Msa0869100:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6_1:+2921678 Msa0869100:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6_1:+2920301 Msa0869100:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6_1:+2920468 Msa0869100:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6_1:+2921409 Msa0869100:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6_1:+2921997 Msa0869100:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6_1:+2921150 Msa0869100:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6_1:+2920102 Msa0869100:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6_1:+2919840 Msa0869100:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6_1:+2922266 Msa0869100:CDS
AGACACCCCATTATTCACCA+GGG 0.727389 6_1:-2919820 None:intergenic
TGATTCCCTGGTGAATAATG+GGG 0.729521 6_1:+2919815 Msa0869100:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6_1:+2921591 Msa0869100:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6_1:+2920465 Msa0869100:CDS
TGATTCTGAAGTGAATAATG+GGG 0.749979 6_1:+2919941 Msa0869100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATTATCCTTAAA+AGG - chr6_1:2920617-2920636 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG + chr6_1:2920619-2920638 Msa0869100:CDS 20.0%
! TAGTTTAGCTGAAAATGTTA+TGG + chr6_1:2919686-2919705 Msa0869100:CDS 25.0%
! AATGTTGATATTGAAGTGAA+CGG + chr6_1:2920083-2920102 Msa0869100:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG + chr6_1:2920623-2920642 Msa0869100:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG + chr6_1:2920973-2920992 Msa0869100:CDS 25.0%
!! TCTTCTGAGATGAATAATGA+CGG + chr6_1:2919840-2919859 Msa0869100:CDS 30.0%
!! ACTGATTCTGAAGTGAATAA+TGG + chr6_1:2919939-2919958 Msa0869100:CDS 30.0%
!! CTGATTCTGAAGTGAATAAT+GGG + chr6_1:2919940-2919959 Msa0869100:CDS 30.0%
!! TGATTCTGAAGTGAATAATG+GGG + chr6_1:2919941-2919960 Msa0869100:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG + chr6_1:2920034-2920053 Msa0869100:CDS 30.0%
ATGTTGATATTGAAGTGAAC+GGG + chr6_1:2920084-2920103 Msa0869100:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG + chr6_1:2920222-2920241 Msa0869100:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG + chr6_1:2920329-2920348 Msa0869100:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG + chr6_1:2920330-2920349 Msa0869100:CDS 30.0%
TTGACGATTTGATTGATGAA+AGG + chr6_1:2920411-2920430 Msa0869100:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG + chr6_1:2920541-2920560 Msa0869100:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG - chr6_1:2920602-2920621 None:intergenic 30.0%
!! GGATAATTTTGATGATATGG+TGG + chr6_1:2920622-2920641 Msa0869100:CDS 30.0%
AAAAATTCAGGAATCAAGGA+AGG + chr6_1:2920782-2920801 Msa0869100:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG + chr6_1:2920898-2920917 Msa0869100:CDS 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG + chr6_1:2920947-2920966 Msa0869100:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG + chr6_1:2921180-2921199 Msa0869100:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG + chr6_1:2921185-2921204 Msa0869100:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG + chr6_1:2921186-2921205 Msa0869100:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG - chr6_1:2921475-2921494 None:intergenic 30.0%
AGTTTCAAAGTATAACAGTG+AGG + chr6_1:2921591-2921610 Msa0869100:CDS 30.0%
! GCGAATTTTTGACAGAATTT+CGG - chr6_1:2921713-2921732 None:intergenic 30.0%
! AAACTAGTTTCAACCCCAAA+TGG - chr6_1:2919672-2919691 None:intergenic 35.0%
GCTGAAAATGTTATGGTTGA+AGG + chr6_1:2919693-2919712 Msa0869100:CDS 35.0%
AATGATTCCCTGGTGAATAA+TGG + chr6_1:2919813-2919832 Msa0869100:CDS 35.0%
ATGATTCCCTGGTGAATAAT+GGG + chr6_1:2919814-2919833 Msa0869100:CDS 35.0%
GGTGTCTTCTTTGTTGAAAA+CGG + chr6_1:2919962-2919981 Msa0869100:CDS 35.0%
GTGTCTTCTTTGTTGAAAAC+GGG + chr6_1:2919963-2919982 Msa0869100:CDS 35.0%
TGTGAGAAGAAAGTCAAAGA+AGG + chr6_1:2920011-2920030 Msa0869100:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG - chr6_1:2920161-2920180 None:intergenic 35.0%
TGATGTTGAGATGAATGAGA+AGG + chr6_1:2920184-2920203 Msa0869100:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG + chr6_1:2920221-2920240 Msa0869100:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG + chr6_1:2920361-2920380 Msa0869100:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG + chr6_1:2920364-2920383 Msa0869100:CDS 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG + chr6_1:2920441-2920460 Msa0869100:CDS 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG + chr6_1:2920442-2920461 Msa0869100:CDS 35.0%
ACTTTGATGGAACATTTGCT+TGG + chr6_1:2920570-2920589 Msa0869100:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG + chr6_1:2920601-2920620 Msa0869100:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG + chr6_1:2920676-2920695 Msa0869100:CDS 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG + chr6_1:2920950-2920969 Msa0869100:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG - chr6_1:2921105-2921124 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG - chr6_1:2921135-2921154 None:intergenic 35.0%
!! AAAAGCATCGCTGACATTAT+GGG + chr6_1:2921148-2921167 Msa0869100:CDS 35.0%
TCTGGTTGCAATTAAGTCAA+AGG + chr6_1:2921228-2921247 Msa0869100:CDS 35.0%
CTGGTTGCAATTAAGTCAAA+GGG + chr6_1:2921229-2921248 Msa0869100:CDS 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG - chr6_1:2921298-2921317 None:intergenic 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG - chr6_1:2921466-2921485 None:intergenic 35.0%
CCGAAAGAACCAAATGAAAA+GGG + chr6_1:2921463-2921482 Msa0869100:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG + chr6_1:2921482-2921501 Msa0869100:CDS 35.0%
TCTCTGATTGAAGTAGTGAA+AGG - chr6_1:2921532-2921551 None:intergenic 35.0%
TTCAATCAGAGACTTTGTGA+AGG + chr6_1:2921540-2921559 Msa0869100:CDS 35.0%
TCAATCAGAGACTTTGTGAA+GGG + chr6_1:2921541-2921560 Msa0869100:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG - chr6_1:2921589-2921608 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG - chr6_1:2921950-2921969 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG - chr6_1:2922034-2922053 None:intergenic 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG - chr6_1:2922084-2922103 None:intergenic 35.0%
TCTACCTTTGTCTTGAAATC+AGG - chr6_1:2922228-2922247 None:intergenic 35.0%
! TGTGGTTGATACTGAATCGA+TGG + chr6_1:2919644-2919663 Msa0869100:CDS 40.0%
ACTGAATCGATGGAACCATT+TGG + chr6_1:2919654-2919673 Msa0869100:CDS 40.0%
CTGAATCGATGGAACCATTT+GGG + chr6_1:2919655-2919674 Msa0869100:CDS 40.0%
TGAATCGATGGAACCATTTG+GGG + chr6_1:2919656-2919675 Msa0869100:CDS 40.0%
TCTGAAGGAGAATGATTCTC+AGG + chr6_1:2919785-2919804 Msa0869100:CDS 40.0%
TGATTCCCTGGTGAATAATG+GGG + chr6_1:2919815-2919834 Msa0869100:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG + chr6_1:2919896-2919915 Msa0869100:CDS 40.0%
TTTGAAGGAGAATGACTCTC+AGG + chr6_1:2919911-2919930 Msa0869100:CDS 40.0%
TTGAAAACGGGAGAAAACGA+TGG + chr6_1:2919975-2919994 Msa0869100:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG - chr6_1:2920065-2920084 None:intergenic 40.0%
TGATATTGAAGTGAACGGGA+AGG + chr6_1:2920088-2920107 Msa0869100:CDS 40.0%
TGAAAAAACTGCGACTGTTG+AGG + chr6_1:2920133-2920152 Msa0869100:CDS 40.0%
GATGAATGAGAAGGATAGTG+AGG + chr6_1:2920193-2920212 Msa0869100:CDS 40.0%
AATGAGAAGGATAGTGAGGA+GGG + chr6_1:2920197-2920216 Msa0869100:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG + chr6_1:2920241-2920260 Msa0869100:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG + chr6_1:2920253-2920272 Msa0869100:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG + chr6_1:2920256-2920275 Msa0869100:CDS 40.0%
CGATGTTGAAATGACTGAGA+AGG + chr6_1:2920292-2920311 Msa0869100:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG + chr6_1:2920428-2920447 Msa0869100:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG + chr6_1:2920443-2920462 Msa0869100:CDS 40.0%
GAAAGATTAAGAGTCATCCG+TGG + chr6_1:2920465-2920484 Msa0869100:CDS 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG + chr6_1:2920557-2920576 Msa0869100:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG + chr6_1:2920629-2920648 Msa0869100:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG - chr6_1:2920660-2920679 None:intergenic 40.0%
TACAGCTTCTTGAACAGCAT+AGG - chr6_1:2920672-2920691 None:intergenic 40.0%
CAAGAAGCTGTAAATGAGGT+TGG + chr6_1:2920680-2920699 Msa0869100:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG + chr6_1:2920684-2920703 Msa0869100:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG + chr6_1:2920685-2920704 Msa0869100:CDS 40.0%
! CCTGAATTTTTCGCCAACAT+TGG - chr6_1:2920773-2920792 None:intergenic 40.0%
CCAATGTTGGCGAAAAATTC+AGG + chr6_1:2920770-2920789 Msa0869100:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG + chr6_1:2920778-2920797 Msa0869100:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG - chr6_1:2920860-2920879 None:intergenic 40.0%
! TCTGGAGCTGGAAATATTGA+AGG + chr6_1:2920916-2920935 Msa0869100:CDS 40.0%
AGCTGGAAATATTGAAGGCT+TGG + chr6_1:2920921-2920940 Msa0869100:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG + chr6_1:2920984-2921003 Msa0869100:CDS 40.0%
TTGTTATGAGGATCCCAAAC+GGG + chr6_1:2920985-2921004 Msa0869100:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG - chr6_1:2921070-2921089 None:intergenic 40.0%
! ACTTCCTGAACCTGATTTTG+GGG - chr6_1:2921104-2921123 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG - chr6_1:2921106-2921125 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+TGG - chr6_1:2921130-2921149 None:intergenic 40.0%
!! GAAAAGCATCGCTGACATTA+TGG + chr6_1:2921147-2921166 Msa0869100:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG + chr6_1:2921149-2921168 Msa0869100:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG + chr6_1:2921210-2921229 Msa0869100:CDS 40.0%
AAAAAAGACAACGACGATGC+AGG + chr6_1:2921262-2921281 Msa0869100:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG + chr6_1:2921263-2921282 Msa0869100:CDS 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG + chr6_1:2921304-2921323 Msa0869100:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG + chr6_1:2921328-2921347 Msa0869100:CDS 40.0%
TGGAAAAGAAAGCTGTGACA+GGG + chr6_1:2921351-2921370 Msa0869100:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG + chr6_1:2921409-2921428 Msa0869100:CDS 40.0%
GCCGAAAGAACCAAATGAAA+AGG + chr6_1:2921462-2921481 Msa0869100:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG - chr6_1:2921529-2921548 None:intergenic 40.0%
CTTTCTCATCATCTGGTGTT+TGG - chr6_1:2921654-2921673 None:intergenic 40.0%
AGGGTTTCTTTCTCATCATC+TGG - chr6_1:2921661-2921680 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG - chr6_1:2921680-2921699 None:intergenic 40.0%
TTTGACAGAATTTCGGCTGA+AGG - chr6_1:2921706-2921725 None:intergenic 40.0%
TTAGTCCACAAATGTCAAGG+AGG + chr6_1:2921743-2921762 Msa0869100:CDS 40.0%
TAGTCCACAAATGTCAAGGA+GGG + chr6_1:2921744-2921763 Msa0869100:CDS 40.0%
AGAAGTTCATTGTATCGCGA+AGG + chr6_1:2921808-2921827 Msa0869100:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG + chr6_1:2921844-2921863 Msa0869100:CDS 40.0%
GATTGATCAAGCTCAGATTC+TGG - chr6_1:2921892-2921911 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG + chr6_1:2921919-2921938 Msa0869100:CDS 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG - chr6_1:2922079-2922098 None:intergenic 40.0%
GACGATCAACTTAGATGTCT+CGG - chr6_1:2922148-2922167 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG + chr6_1:2922165-2922184 Msa0869100:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG + chr6_1:2922221-2922240 Msa0869100:CDS 40.0%
TTTGGAGGATGTGAACAACA+TGG + chr6_1:2922266-2922285 Msa0869100:CDS 40.0%
TATGGTTGAAGGTTCAGAGC+AGG + chr6_1:2919704-2919723 Msa0869100:CDS 45.0%
GCAGGAGAAGAATGAGCTTA+AGG + chr6_1:2919722-2919741 Msa0869100:CDS 45.0%
!! TGTTTTCGAGACCGAGGTTT+CGG + chr6_1:2919761-2919780 Msa0869100:CDS 45.0%
! TCAGGTTGTGAATGATTCCC+TGG + chr6_1:2919803-2919822 Msa0869100:CDS 45.0%
AGACACCCCATTATTCACCA+GGG - chr6_1:2919823-2919842 None:intergenic 45.0%
AAGACACCCCATTATTCACC+AGG - chr6_1:2919824-2919843 None:intergenic 45.0%
!! GAGTAGTGTTTTCGAGACTG+AGG + chr6_1:2919881-2919900 Msa0869100:CDS 45.0%
GACTGTGGAGATTCCAATTG+TGG + chr6_1:2920049-2920068 Msa0869100:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG + chr6_1:2920145-2920164 Msa0869100:CDS 45.0%
GAATGAGAAGGATAGTGAGG+AGG + chr6_1:2920196-2920215 Msa0869100:CDS 45.0%
GATAGTGAGGAGGGAGAAAA+GGG + chr6_1:2920206-2920225 Msa0869100:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG + chr6_1:2920349-2920368 Msa0869100:CDS 45.0%
AGATTAAGAGTCATCCGTGG+TGG + chr6_1:2920468-2920487 Msa0869100:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG + chr6_1:2920502-2920521 Msa0869100:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG - chr6_1:2920598-2920617 None:intergenic 45.0%
GTCTGAATTCGCTCCAATGT+TGG + chr6_1:2920757-2920776 Msa0869100:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG + chr6_1:2920803-2920822 Msa0869100:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG + chr6_1:2920820-2920839 Msa0869100:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG + chr6_1:2920904-2920923 Msa0869100:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG - chr6_1:2920986-2921005 None:intergenic 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG - chr6_1:2921097-2921116 None:intergenic 45.0%
TTGACCCCAAAATCAGGTTC+AGG + chr6_1:2921097-2921116 Msa0869100:CDS 45.0%
! AAGCATCGCTGACATTATGG+GGG + chr6_1:2921150-2921169 Msa0869100:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG + chr6_1:2921331-2921350 Msa0869100:CDS 45.0%
GTGGAAAAGAAAGCTGTGAC+AGG + chr6_1:2921350-2921369 Msa0869100:CDS 45.0%
GGAAAAGAAAGCTGTGACAG+GGG + chr6_1:2921352-2921371 Msa0869100:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG + chr6_1:2921391-2921410 Msa0869100:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG + chr6_1:2921413-2921432 Msa0869100:CDS 45.0%
AGAGACTTTGTGAAGGGAAG+AGG + chr6_1:2921547-2921566 Msa0869100:CDS 45.0%
TTGAAACTCGAGGAGAAAGC+AGG - chr6_1:2921579-2921598 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG + chr6_1:2921606-2921625 Msa0869100:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG - chr6_1:2921681-2921700 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG + chr6_1:2921678-2921697 Msa0869100:CDS 45.0%
GAAGGAACCTTGACTTTCTC+TGG - chr6_1:2921688-2921707 None:intergenic 45.0%
CGCTTAGTCCACAAATGTCA+AGG + chr6_1:2921740-2921759 Msa0869100:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG + chr6_1:2921745-2921764 Msa0869100:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG + chr6_1:2921850-2921869 Msa0869100:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG - chr6_1:2921865-2921884 None:intergenic 45.0%
TGGACCAGCCAAGAAAAGAA+AGG + chr6_1:2921939-2921958 Msa0869100:CDS 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG - chr6_1:2921946-2921965 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG + chr6_1:2922024-2922043 Msa0869100:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG + chr6_1:2922170-2922189 Msa0869100:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG - chr6_1:2922214-2922233 None:intergenic 45.0%
!! GAGTAGTGTTTTCGAGACCG+AGG + chr6_1:2919755-2919774 Msa0869100:CDS 50.0%
CTCCTTCAGAACCGAAACCT+CGG - chr6_1:2919775-2919794 None:intergenic 50.0%
AGTGAACGGGAAGGAGAATG+AGG + chr6_1:2920097-2920116 Msa0869100:CDS 50.0%
AACGGGAAGGAGAATGAGGA+GGG + chr6_1:2920101-2920120 Msa0869100:CDS 50.0%
GGATAGTGAGGAGGGAGAAA+AGG + chr6_1:2920205-2920224 Msa0869100:CDS 50.0%
CTCTCACTTGCCTCCACTAT+TGG - chr6_1:2920269-2920288 None:intergenic 50.0%
AATGACTGAGAAGGAGAGCG+CGG + chr6_1:2920301-2920320 Msa0869100:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG + chr6_1:2920691-2920710 Msa0869100:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG + chr6_1:2920721-2920740 Msa0869100:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG - chr6_1:2920818-2920837 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG + chr6_1:2920838-2920857 Msa0869100:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG - chr6_1:2921001-2921020 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG - chr6_1:2921002-2921021 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG + chr6_1:2921044-2921063 Msa0869100:CDS 50.0%
CTGCCATTGACCCCAAAATC+AGG + chr6_1:2921091-2921110 Msa0869100:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG + chr6_1:2921375-2921394 Msa0869100:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG + chr6_1:2921412-2921431 Msa0869100:CDS 50.0%
AGCGGAGAGGAAAACGATGA+AGG + chr6_1:2921436-2921455 Msa0869100:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG + chr6_1:2921437-2921456 Msa0869100:CDS 50.0%
! TTTGTGAAGGGAAGAGGTGC+TGG + chr6_1:2921553-2921572 Msa0869100:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG + chr6_1:2921854-2921873 Msa0869100:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG + chr6_1:2922027-2922046 Msa0869100:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG + chr6_1:2922233-2922252 Msa0869100:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG + chr6_1:2922240-2922259 Msa0869100:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG + chr6_1:2922248-2922267 Msa0869100:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG + chr6_1:2922251-2922270 Msa0869100:CDS 50.0%
! GACCGAGGTTTCGGTTCTGA+AGG + chr6_1:2919770-2919789 Msa0869100:CDS 55.0%
GAACGGGAAGGAGAATGAGG+AGG + chr6_1:2920100-2920119 Msa0869100:CDS 55.0%
ACGGGAAGGAGAATGAGGAG+GGG + chr6_1:2920102-2920121 Msa0869100:CDS 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG + chr6_1:2920379-2920398 Msa0869100:CDS 55.0%
GACGGATCATAAACCCGACC+TGG - chr6_1:2920494-2920513 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG - chr6_1:2920512-2920531 None:intergenic 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG + chr6_1:2920724-2920743 Msa0869100:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG + chr6_1:2920725-2920744 Msa0869100:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG + chr6_1:2920823-2920842 Msa0869100:CDS 55.0%
! GAGGATCCCAAACGGGTTCT+CGG + chr6_1:2920992-2921011 Msa0869100:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG + chr6_1:2921043-2921062 Msa0869100:CDS 55.0%
TCTTCAAACGGCCCTTGGGA+TGG - chr6_1:2921058-2921077 None:intergenic 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG + chr6_1:2921057-2921076 Msa0869100:CDS 55.0%
GTCCTCTTCAAACGGCCCTT+GGG - chr6_1:2921062-2921081 None:intergenic 55.0%
AGTCCTCTTCAAACGGCCCT+TGG - chr6_1:2921063-2921082 None:intergenic 55.0%
CATCGCTGACATTATGGGGG+AGG + chr6_1:2921153-2921172 Msa0869100:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG + chr6_1:2921370-2921389 Msa0869100:CDS 55.0%
GTGCCCCTCCTTGACATTTG+TGG - chr6_1:2921751-2921770 None:intergenic 55.0%
GCTGGTCCAGAATCTTCGCT+AGG - chr6_1:2921928-2921947 None:intergenic 55.0%
GCTCGTGAAACCAAGACCAG+CGG + chr6_1:2921997-2922016 Msa0869100:CDS 55.0%
AACCAAGACCAGCGGCAAGA+AGG + chr6_1:2922005-2922024 Msa0869100:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG + chr6_1:2922006-2922025 Msa0869100:CDS 55.0%
GAGATGGTGTGGCTGGAGTT+AGG - chr6_1:2922113-2922132 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG - chr6_1:2922120-2922139 None:intergenic 55.0%
AGCCACACCATCTCTGTCAC+AGG + chr6_1:2922119-2922138 Msa0869100:CDS 55.0%
GCCACACCATCTCTGTCACA+GGG + chr6_1:2922120-2922139 Msa0869100:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG - chr6_1:2922124-2922143 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG - chr6_1:2922129-2922148 None:intergenic 55.0%
! ACTGAGAAGGAGAGCGCGGA+AGG + chr6_1:2920305-2920324 Msa0869100:CDS 60.0%
AAGAGTCATCCGTGGTGGCC+AGG + chr6_1:2920473-2920492 Msa0869100:CDS 60.0%
TAAACCCGACCTGGCCACCA+CGG - chr6_1:2920485-2920504 None:intergenic 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG + chr6_1:2920726-2920745 Msa0869100:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG + chr6_1:2920727-2920746 Msa0869100:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG - chr6_1:2920734-2920753 None:intergenic 60.0%
GAGAACATCAGCGGTGGGAG+CGG + chr6_1:2921418-2921437 Msa0869100:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG + chr6_1:2922007-2922026 Msa0869100:CDS 60.0%
GTCATCCGTGGTGGCCAGGT+CGG + chr6_1:2920477-2920496 Msa0869100:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG + chr6_1:2920478-2920497 Msa0869100:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG - chr6_1:2922010-2922029 None:intergenic 65.0%
ATCGGTCCCCTTCTTGCCGC+TGG - chr6_1:2922016-2922035 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG + chr6_1:2921423-2921442 Msa0869100:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2919639 2922308 2919639 ID=Msa0869100;Name=Msa0869100
chr6_1 mRNA 2919639 2922308 2919639 ID=Msa0869100-mRNA-1;Parent=Msa0869100;Name=Msa0869100-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|889
chr6_1 exon 2919639 2922308 2919639 ID=Msa0869100-mRNA-1:exon:911;Parent=Msa0869100-mRNA-1
chr6_1 CDS 2919639 2922308 2919639 ID=Msa0869100-mRNA-1:cds;Parent=Msa0869100-mRNA-1
Gene Sequence

>Msa0869100

ATGGGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCGAGACCGAGGTTTCGGTTCTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCTGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTCTTTAAGAGTAGTGTTTTCGAGACTGAGGTTTCGATTTTGAAGGAGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGGGGTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTCGTCGTTTGTGAGAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATGTTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAACTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATGTTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAATATTGAAGGCTTGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCAAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCAAAGGGTAGAAAAAAGAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGACAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTGAAGGGAAGAGGTGCTGGCCTGCTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCACCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTATAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTCGTGA
Protein sequence

>Msa0869100

MGVVDTESMEPFGVETSLAENVMVEGSEQEKNELKEVVKSSVFETEVSVLKENDSQVVNDSLVNNGVSSEMNNDGAVEVFKSSVFETEVSILKENDSQVVTDSEVNNGVSSLLKTGENDGSVVVCEKKVKEGDEKIQTVEIPIVEISENVDIEVNGKENEEGKKDEKTATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESIDVEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEILKAWISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKDVDAKDKEWDASDDEVLVAIKSKGRKKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCDRGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKGRGAGLLSPRVSKYNSEAFQELELSVSLNHQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLIDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSS*