Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263410 | XP_003610473.2 | 93.056 | 432 | 6 | 2 | 1 | 408 | 163 | 594 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263410 | sp|F4HYR4|OFT15_ARATH | 71.860 | 430 | 96 | 3 | 1 | 405 | 220 | 649 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263410 | A0A0C3X8U6 | 93.056 | 432 | 6 | 2 | 1 | 408 | 163 | 594 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079110 | Msa1263410 | 0.805971 | 1.031841e-49 | -8.615850e-47 |
| Msa0087800 | Msa1263410 | 0.800124 | 1.669543e-48 | -8.615850e-47 |
| Msa0682090 | Msa1263410 | 0.810403 | 1.173108e-50 | -8.615850e-47 |
| Msa0682140 | Msa1263410 | 0.809306 | 2.020037e-50 | -8.615850e-47 |
| Msa0185510 | Msa1263410 | 0.807269 | 5.489072e-50 | -8.615850e-47 |
| Msa1256270 | Msa1263410 | -0.811447 | 6.970521e-51 | -8.615850e-47 |
| Msa1263410 | Msa1296460 | -0.801520 | 8.663608e-49 | -8.615850e-47 |
| Msa0437400 | Msa1263410 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263410 | MtrunA17_Chr4g0075311 | 93.056 | 432 | 6 | 2 | 1 | 408 | 163 | 594 | 0.0 | 816 |
| Msa1263410 | MtrunA17_Chr2g0284071 | 57.907 | 430 | 153 | 5 | 2 | 406 | 215 | 641 | 6.10e-179 | 513 |
| Msa1263410 | MtrunA17_Chr4g0043911 | 38.679 | 424 | 216 | 11 | 2 | 406 | 150 | 548 | 6.79e-86 | 272 |
| Msa1263410 | MtrunA17_Chr3g0077321 | 38.061 | 423 | 224 | 12 | 2 | 408 | 147 | 547 | 4.91e-85 | 270 |
| Msa1263410 | MtrunA17_Chr1g0160781 | 38.061 | 423 | 218 | 11 | 2 | 405 | 149 | 546 | 8.88e-85 | 268 |
| Msa1263410 | MtrunA17_Chr5g0399311 | 37.678 | 422 | 205 | 13 | 2 | 405 | 124 | 505 | 7.15e-83 | 263 |
| Msa1263410 | MtrunA17_Chr4g0056061 | 38.481 | 395 | 189 | 10 | 2 | 380 | 108 | 464 | 4.43e-81 | 258 |
| Msa1263410 | MtrunA17_Chr5g0424241 | 37.559 | 426 | 223 | 10 | 1 | 405 | 156 | 559 | 3.49e-80 | 258 |
| Msa1263410 | MtrunA17_Chr5g0448581 | 37.662 | 385 | 191 | 8 | 5 | 376 | 122 | 470 | 1.42e-79 | 256 |
| Msa1263410 | MtrunA17_Chr5g0412251 | 36.449 | 428 | 238 | 11 | 2 | 406 | 86 | 502 | 7.78e-78 | 249 |
| Msa1263410 | MtrunA17_Chr3g0123521 | 36.364 | 374 | 203 | 9 | 2 | 360 | 150 | 503 | 1.05e-76 | 248 |
| Msa1263410 | MtrunA17_Chr3g0132951 | 34.346 | 428 | 249 | 10 | 2 | 407 | 100 | 517 | 1.50e-76 | 246 |
| Msa1263410 | MtrunA17_Chr4g0042711 | 36.300 | 427 | 215 | 12 | 2 | 405 | 97 | 489 | 4.83e-76 | 244 |
| Msa1263410 | MtrunA17_Chr3g0143821 | 36.434 | 387 | 198 | 7 | 3 | 376 | 112 | 463 | 1.62e-75 | 245 |
| Msa1263410 | MtrunA17_Chr5g0417871 | 36.916 | 428 | 211 | 13 | 2 | 405 | 85 | 477 | 2.53e-75 | 242 |
| Msa1263410 | MtrunA17_Chr2g0307971 | 35.431 | 429 | 215 | 14 | 2 | 404 | 115 | 507 | 3.28e-67 | 222 |
| Msa1263410 | MtrunA17_Chr6g0455571 | 34.112 | 428 | 222 | 12 | 2 | 404 | 115 | 507 | 5.33e-66 | 218 |
| Msa1263410 | MtrunA17_Chr4g0061781 | 34.426 | 427 | 222 | 11 | 2 | 404 | 116 | 508 | 9.48e-66 | 218 |
| Msa1263410 | MtrunA17_Chr5g0426591 | 35.147 | 441 | 213 | 14 | 2 | 407 | 111 | 513 | 1.32e-65 | 218 |
| Msa1263410 | MtrunA17_Chr3g0132371 | 34.312 | 443 | 209 | 12 | 2 | 406 | 141 | 539 | 2.44e-62 | 209 |
| Msa1263410 | MtrunA17_Chr1g0204121 | 33.255 | 427 | 226 | 13 | 2 | 407 | 88 | 476 | 1.27e-57 | 196 |
| Msa1263410 | MtrunA17_Chr3g0129981 | 34.574 | 376 | 198 | 8 | 5 | 367 | 117 | 457 | 3.44e-57 | 195 |
| Msa1263410 | MtrunA17_Chr4g0070551 | 29.535 | 430 | 241 | 11 | 2 | 407 | 228 | 619 | 4.02e-53 | 186 |
| Msa1263410 | MtrunA17_Chr5g0436321 | 29.302 | 430 | 242 | 13 | 1 | 406 | 160 | 551 | 1.62e-51 | 181 |
| Msa1263410 | MtrunA17_Chr1g0204141 | 32.251 | 431 | 228 | 14 | 2 | 407 | 88 | 479 | 2.80e-51 | 179 |
| Msa1263410 | MtrunA17_Chr4g0008451 | 31.948 | 385 | 212 | 10 | 2 | 371 | 232 | 581 | 1.15e-50 | 180 |
| Msa1263410 | MtrunA17_Chr3g0087291 | 30.166 | 421 | 234 | 15 | 5 | 405 | 176 | 556 | 1.92e-43 | 159 |
| Msa1263410 | MtrunA17_Chr4g0010511 | 31.415 | 417 | 234 | 15 | 5 | 405 | 236 | 616 | 1.69e-42 | 157 |
| Msa1263410 | MtrunA17_Chr7g0220381 | 29.154 | 319 | 177 | 7 | 2 | 297 | 98 | 390 | 8.06e-32 | 127 |
| Msa1263410 | MtrunA17_Chr4g0003561 | 28.889 | 360 | 191 | 14 | 2 | 342 | 75 | 388 | 1.27e-29 | 119 |
| Msa1263410 | MtrunA17_Chr3g0127811 | 30.492 | 305 | 178 | 7 | 2 | 297 | 63 | 342 | 1.29e-26 | 111 |
| Msa1263410 | MtrunA17_Chr1g0146501 | 29.874 | 318 | 176 | 7 | 2 | 297 | 90 | 382 | 2.64e-26 | 111 |
| Msa1263410 | MtrunA17_Chr7g0240241 | 43.966 | 116 | 63 | 1 | 178 | 293 | 8 | 121 | 1.73e-24 | 97.8 |
| Msa1263410 | MtrunA17_Chr4g0075351 | 67.742 | 62 | 14 | 2 | 249 | 308 | 1 | 58 | 1.33e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263410 | AT1G62330.1 | 71.860 | 430 | 96 | 3 | 1 | 405 | 220 | 649 | 0.0 | 647 |
| Msa1263410 | AT1G11990.2 | 69.108 | 437 | 103 | 4 | 1 | 405 | 174 | 610 | 0.0 | 598 |
| Msa1263410 | AT1G11990.1 | 70.574 | 418 | 92 | 3 | 1 | 405 | 189 | 588 | 0.0 | 582 |
| Msa1263410 | AT1G29200.4 | 56.338 | 426 | 164 | 3 | 2 | 406 | 70 | 494 | 2.64e-165 | 473 |
| Msa1263410 | AT1G29200.1 | 56.338 | 426 | 164 | 3 | 2 | 406 | 70 | 494 | 2.64e-165 | 473 |
| Msa1263410 | AT1G29200.2 | 56.338 | 426 | 164 | 3 | 2 | 406 | 186 | 610 | 7.99e-164 | 474 |
| Msa1263410 | AT1G29200.3 | 55.819 | 421 | 164 | 3 | 7 | 406 | 1 | 420 | 2.00e-161 | 461 |
| Msa1263410 | AT4G38390.1 | 37.589 | 423 | 209 | 11 | 2 | 407 | 123 | 507 | 1.35e-82 | 263 |
| Msa1263410 | AT2G01480.1 | 37.500 | 424 | 221 | 11 | 2 | 406 | 154 | 552 | 1.45e-82 | 263 |
| Msa1263410 | AT1G14970.3 | 36.967 | 422 | 226 | 11 | 2 | 406 | 9 | 407 | 3.88e-82 | 258 |
| Msa1263410 | AT1G14970.2 | 36.967 | 422 | 226 | 11 | 2 | 406 | 35 | 433 | 5.73e-82 | 258 |
| Msa1263410 | AT1G14970.1 | 36.967 | 422 | 226 | 11 | 2 | 406 | 155 | 553 | 1.36e-80 | 258 |
| Msa1263410 | AT5G65470.1 | 35.897 | 429 | 235 | 11 | 4 | 405 | 87 | 502 | 8.31e-80 | 254 |
| Msa1263410 | AT4G16650.2 | 35.697 | 423 | 214 | 12 | 2 | 406 | 122 | 504 | 6.79e-79 | 253 |
| Msa1263410 | AT4G16650.1 | 35.697 | 423 | 214 | 12 | 2 | 406 | 122 | 504 | 6.79e-79 | 253 |
| Msa1263410 | AT1G35510.1 | 36.342 | 421 | 230 | 11 | 2 | 406 | 159 | 557 | 3.26e-78 | 252 |
| Msa1263410 | AT1G14020.1 | 37.002 | 427 | 212 | 12 | 2 | 405 | 91 | 483 | 1.90e-76 | 246 |
| Msa1263410 | AT4G24530.1 | 34.545 | 440 | 232 | 12 | 2 | 407 | 101 | 518 | 4.26e-76 | 245 |
| Msa1263410 | AT3G26370.1 | 36.364 | 385 | 209 | 9 | 2 | 371 | 158 | 521 | 8.54e-76 | 246 |
| Msa1263410 | AT2G01480.2 | 38.564 | 376 | 191 | 8 | 2 | 360 | 154 | 506 | 1.66e-75 | 244 |
| Msa1263410 | AT2G03280.1 | 36.620 | 426 | 214 | 12 | 2 | 404 | 88 | 480 | 2.19e-75 | 243 |
| Msa1263410 | AT1G76270.1 | 34.351 | 393 | 207 | 8 | 2 | 380 | 106 | 461 | 5.64e-73 | 239 |
| Msa1263410 | AT1G38065.2 | 34.588 | 425 | 235 | 11 | 2 | 405 | 26 | 428 | 1.39e-72 | 234 |
| Msa1263410 | AT1G38065.1 | 34.588 | 425 | 235 | 11 | 2 | 405 | 36 | 438 | 1.98e-72 | 234 |
| Msa1263410 | AT2G03280.2 | 34.658 | 453 | 213 | 12 | 2 | 404 | 88 | 507 | 2.65e-72 | 235 |
| Msa1263410 | AT5G15740.1 | 34.895 | 427 | 220 | 13 | 2 | 404 | 106 | 498 | 1.00e-71 | 234 |
| Msa1263410 | AT1G20550.1 | 34.615 | 390 | 202 | 8 | 2 | 376 | 109 | 460 | 1.05e-71 | 235 |
| Msa1263410 | AT1G38131.1 | 34.588 | 425 | 235 | 11 | 2 | 405 | 155 | 557 | 4.45e-71 | 234 |
| Msa1263410 | AT3G02250.1 | 34.732 | 429 | 218 | 13 | 2 | 404 | 106 | 498 | 6.43e-69 | 226 |
| Msa1263410 | AT5G64600.1 | 33.957 | 374 | 199 | 8 | 2 | 362 | 117 | 455 | 2.01e-59 | 202 |
| Msa1263410 | AT1G04910.1 | 31.850 | 427 | 230 | 12 | 2 | 406 | 88 | 475 | 3.30e-57 | 196 |
| Msa1263410 | AT1G22460.1 | 34.054 | 370 | 188 | 9 | 2 | 354 | 160 | 490 | 2.21e-55 | 192 |
| Msa1263410 | AT5G01100.1 | 30.000 | 430 | 242 | 9 | 2 | 407 | 216 | 610 | 3.38e-51 | 182 |
| Msa1263410 | AT2G37980.1 | 29.302 | 430 | 238 | 12 | 2 | 405 | 226 | 615 | 9.15e-51 | 181 |
| Msa1263410 | AT5G35570.1 | 29.767 | 430 | 240 | 11 | 2 | 407 | 251 | 642 | 1.74e-50 | 180 |
| Msa1263410 | AT3G54100.1 | 29.471 | 397 | 226 | 9 | 2 | 381 | 222 | 581 | 1.25e-49 | 177 |
| Msa1263410 | AT2G44500.1 | 31.415 | 417 | 235 | 11 | 5 | 405 | 180 | 561 | 2.76e-49 | 176 |
| Msa1263410 | AT3G07900.1 | 30.456 | 417 | 239 | 13 | 5 | 405 | 191 | 572 | 3.11e-47 | 170 |
| Msa1263410 | AT3G26370.2 | 35.371 | 229 | 118 | 4 | 2 | 216 | 158 | 370 | 2.91e-41 | 150 |
| Msa1263410 | AT5G63390.1 | 30.476 | 420 | 237 | 15 | 5 | 406 | 167 | 549 | 1.17e-39 | 149 |
| Msa1263410 | AT1G52630.1 | 30.141 | 355 | 187 | 12 | 2 | 340 | 74 | 383 | 4.72e-33 | 129 |
| Msa1263410 | AT3G30300.2 | 29.781 | 319 | 175 | 8 | 2 | 297 | 100 | 392 | 4.44e-32 | 129 |
| Msa1263410 | AT3G30300.1 | 29.781 | 319 | 175 | 8 | 2 | 297 | 100 | 392 | 4.44e-32 | 129 |
| Msa1263410 | AT3G03810.2 | 32.188 | 320 | 166 | 10 | 2 | 297 | 89 | 381 | 1.91e-30 | 124 |
| Msa1263410 | AT3G03810.1 | 32.188 | 320 | 166 | 10 | 2 | 297 | 89 | 381 | 1.91e-30 | 124 |
| Msa1263410 | AT1G52630.2 | 28.909 | 339 | 180 | 12 | 18 | 340 | 2 | 295 | 1.08e-26 | 110 |
| Msa1263410 | AT2G44500.2 | 31.102 | 254 | 132 | 6 | 5 | 245 | 180 | 403 | 2.87e-23 | 101 |
Find 103 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAGTTGTTCACTTTAT+TGG | 0.051460 | 8_2:-66613134 | Msa1263410:CDS |
| ACACTACTGTACATAAATTT+TGG | 0.080188 | 8_2:+66614186 | None:intergenic |
| TTCTCTTTAGTGACTAATTT+AGG | 0.115144 | 8_2:+66612269 | None:intergenic |
| GCTCATTCCTTATGTGAATT+TGG | 0.129244 | 8_2:-66612701 | Msa1263410:CDS |
| ACCAGCAGTTTCTTGTATTC+TGG | 0.171103 | 8_2:+66612886 | None:intergenic |
| GTTGTTCACTTTATTGGATT+TGG | 0.172106 | 8_2:-66613128 | Msa1263410:CDS |
| CTAGCAAGCCTGCGCTTATT+TGG | 0.201176 | 8_2:+66611848 | None:intergenic |
| CTCATTCCTTATGTGAATTT+GGG | 0.207573 | 8_2:-66612700 | Msa1263410:CDS |
| TCCATTTGGAGAATTAAATT+TGG | 0.226569 | 8_2:-66612798 | Msa1263410:CDS |
| AGGAAGTAATGGATACATTT+TGG | 0.228640 | 8_2:-66614424 | Msa1263410:CDS |
| CACTCATTCCCGTCTTCTTC+TGG | 0.237788 | 8_2:-66611607 | Msa1263410:three_prime_UTR |
| CGCGGGCATGCAGGTCTTAT+TGG | 0.239648 | 8_2:-66612845 | Msa1263410:intron |
| CGGCATCTTGTTGGTCCATT+TGG | 0.257656 | 8_2:-66612812 | Msa1263410:CDS |
| AGGAAGTCAGCTTTCATCTT+TGG | 0.272921 | 8_2:-66611921 | Msa1263410:CDS |
| TCTCTTTAGTGACTAATTTA+GGG | 0.277243 | 8_2:+66612270 | None:intergenic |
| ATCCTCATGCTTGCTGCTCT+TGG | 0.290890 | 8_2:-66612377 | Msa1263410:CDS |
| TCCTAAAATACTACAGTCTT+TGG | 0.294035 | 8_2:-66613342 | Msa1263410:CDS |
| GCATTTGCCATGACTGATTC+AGG | 0.299740 | 8_2:-66611941 | Msa1263410:CDS |
| TCAATGCCAGTGCAGGAAAA+TGG | 0.307253 | 8_2:+66612633 | None:intergenic |
| TTGTTCACTTTATTGGATTT+GGG | 0.312165 | 8_2:-66613127 | Msa1263410:CDS |
| CCAGCAGTTTCTTGTATTCT+GGG | 0.323818 | 8_2:+66612887 | None:intergenic |
| CATGAAAGCTTCAAAATACT+TGG | 0.326457 | 8_2:-66612756 | Msa1263410:CDS |
| TCTGGTTATCGAATATATTA+TGG | 0.330083 | 8_2:-66611896 | Msa1263410:CDS |
| TCCCTCACTATCCGAATATC+AGG | 0.331934 | 8_2:+66613368 | None:intergenic |
| CGCTTATTTGGACGTATTGT+TGG | 0.334892 | 8_2:+66611860 | None:intergenic |
| CAGCTTTCATCTTTGGTGTC+TGG | 0.339290 | 8_2:-66611914 | Msa1263410:CDS |
| ACCTGCAGCTCAAATGGTAT+TGG | 0.362625 | 8_2:+66613086 | None:intergenic |
| ACAACTTGACTCCTGATATT+CGG | 0.369431 | 8_2:-66613379 | Msa1263410:CDS |
| TCCAAATTTAATTCTCCAAA+TGG | 0.380795 | 8_2:+66612797 | None:intergenic |
| CGAAGAAGAGAGGAAAGAAT+TGG | 0.381135 | 8_2:-66612672 | Msa1263410:CDS |
| GTATTCTGGGAACAAATTGC+AGG | 0.383617 | 8_2:+66612900 | None:intergenic |
| GTAGCTGGTTCTAATTTGTA+TGG | 0.388082 | 8_2:-66612329 | Msa1263410:CDS |
| CCAAAGTTGAATTGAGTAAC+CGG | 0.388733 | 8_2:+66614214 | None:intergenic |
| GGCTAAATTGATTAATCCAT+TGG | 0.389029 | 8_2:-66611586 | Msa1263410:three_prime_UTR |
| ATTTGCTAATTATTCATCTC+AGG | 0.422687 | 8_2:-66612219 | Msa1263410:intron |
| CACATACATTCTTTACACCT+TGG | 0.424505 | 8_2:+66611707 | None:intergenic |
| TCCAATACCATTTGAGCTGC+AGG | 0.433289 | 8_2:-66613087 | Msa1263410:intron |
| CCATTGGATCGGCATCTTGT+TGG | 0.435710 | 8_2:-66612821 | Msa1263410:CDS |
| TTGATTGATCCCACCATTTG+CGG | 0.436523 | 8_2:+66614398 | None:intergenic |
| ATATTTACCTGCAGCTCAAA+TGG | 0.439821 | 8_2:+66613080 | None:intergenic |
| TACCTTCTCCTTCAGAGCTC+AGG | 0.441729 | 8_2:-66612436 | Msa1263410:CDS |
| CCGGTTACTCAATTCAACTT+TGG | 0.444063 | 8_2:-66614214 | Msa1263410:CDS |
| CCTTCAGAGCTCAGGTCTGA+AGG | 0.450269 | 8_2:-66612428 | Msa1263410:CDS |
| TGCAGGTCTTATTGGACCAT+TGG | 0.462153 | 8_2:-66612837 | Msa1263410:intron |
| CTTCATAGGCTGTGCTGCCT+CGG | 0.466333 | 8_2:-66611966 | Msa1263410:CDS |
| TCTATTGTAGTTAGCAGCAC+TGG | 0.472992 | 8_2:-66611990 | Msa1263410:intron |
| AGCATGAGGATGGATTCTTC+AGG | 0.476449 | 8_2:+66612389 | None:intergenic |
| ATGGATTCTTCAGGTGTCAA+TGG | 0.485741 | 8_2:+66612398 | None:intergenic |
| ACAATTTAATTTATTTACAT+AGG | 0.489943 | 8_2:-66611680 | Msa1263410:exon |
| ACTACAGTCTTTGGACTTGG+AGG | 0.491878 | 8_2:-66613333 | Msa1263410:CDS |
| TGAGATGAATAATTAGCAAA+TGG | 0.493642 | 8_2:+66612221 | None:intergenic |
| TGGTGGGATCAATCAACAAC+GGG | 0.501801 | 8_2:-66614391 | Msa1263410:CDS |
| GTAATGCTGTTGTCGTGGCC+CGG | 0.505025 | 8_2:-66614233 | Msa1263410:CDS |
| TCTTTGGACTTGGAGGCAAT+CGG | 0.510862 | 8_2:-66613326 | Msa1263410:CDS |
| AAGACAAACATATTTGTAGC+TGG | 0.511487 | 8_2:-66612344 | Msa1263410:CDS |
| TTAGCAGCACTGGACTTCAT+AGG | 0.513025 | 8_2:-66611980 | Msa1263410:CDS |
| CTATAAACACTTCTTGCCTT+AGG | 0.515636 | 8_2:+66611734 | None:intergenic |
| CCTTCAGACCTGAGCTCTGA+AGG | 0.519070 | 8_2:+66612428 | None:intergenic |
| AATACTACAGTCTTTGGACT+TGG | 0.522721 | 8_2:-66613336 | Msa1263410:CDS |
| GTATGGAGGTCGCTCACGGT+TGG | 0.525649 | 8_2:-66612312 | Msa1263410:CDS |
| AAGAGCAGCAAGCATGAGGA+TGG | 0.526483 | 8_2:+66612379 | None:intergenic |
| ACTACAATAGAAGGAAGTAA+TGG | 0.530681 | 8_2:-66614435 | None:intergenic |
| CTACAAATATGTTTGTCTTG+CGG | 0.533769 | 8_2:+66612348 | None:intergenic |
| TCAATTTAGCCAGAAGAAGA+CGG | 0.538842 | 8_2:+66611598 | None:intergenic |
| GTCTTATTGGACCATTGGAT+CGG | 0.546272 | 8_2:-66612832 | Msa1263410:CDS |
| CCAGGTAACAGATGTTGACA+TGG | 0.548508 | 8_2:-66613213 | Msa1263410:intron |
| TATTGGATTTGGGAATCGCT+TGG | 0.548541 | 8_2:-66613117 | Msa1263410:CDS |
| TCCCATGCAAAGTCAACCAA+TGG | 0.553300 | 8_2:+66611570 | None:intergenic |
| CAATTTAGCCAGAAGAAGAC+GGG | 0.558560 | 8_2:+66611599 | None:intergenic |
| TATCGAATATATTATGGTGG+AGG | 0.560012 | 8_2:-66611890 | Msa1263410:CDS |
| CCCAGAATACAAGAAACTGC+TGG | 0.564118 | 8_2:-66612887 | Msa1263410:intron |
| CTTCAGAGCTCAGGTCTGAA+GGG | 0.566401 | 8_2:-66612427 | Msa1263410:CDS |
| ATGTGTTTCAAGTAAAAGCT+CGG | 0.568622 | 8_2:+66613176 | None:intergenic |
| TCATTCCTTATGTGAATTTG+GGG | 0.569061 | 8_2:-66612699 | Msa1263410:CDS |
| GGTGTAAAGAATGTATGTGC+AGG | 0.571881 | 8_2:-66611703 | Msa1263410:CDS |
| CTCCTGATATTCGGATAGTG+AGG | 0.572428 | 8_2:-66613370 | Msa1263410:CDS |
| ATTTGTATGGAGGTCGCTCA+CGG | 0.580220 | 8_2:-66612316 | Msa1263410:CDS |
| AGAGAACTTACTTTCTTCAG+CGG | 0.584628 | 8_2:-66612252 | Msa1263410:CDS |
| GACTAATTTAGGGTACAAGC+TGG | 0.588710 | 8_2:+66612280 | None:intergenic |
| AACAATGCTACAAATTACAA+TGG | 0.589037 | 8_2:+66611642 | None:intergenic |
| GCTGGTTCTAATTTGTATGG+AGG | 0.591032 | 8_2:-66612326 | Msa1263410:CDS |
| TATTCTGGGAACAAATTGCA+GGG | 0.594650 | 8_2:+66612901 | None:intergenic |
| CCAACAAGATGCCGATCCAA+TGG | 0.595281 | 8_2:+66612821 | None:intergenic |
| TTTCAAGTAAAAGCTCGGCT+TGG | 0.597881 | 8_2:+66613181 | None:intergenic |
| AGCCAAGAGCAGCAAGCATG+AGG | 0.599771 | 8_2:+66612375 | None:intergenic |
| AGATGTTGACATGGGAAAGG+AGG | 0.602228 | 8_2:-66613204 | Msa1263410:CDS |
| CTGACTTCCTGAATCAGTCA+TGG | 0.602436 | 8_2:+66611934 | None:intergenic |
| ACATGTACAGACAAGGCCTA+AGG | 0.603476 | 8_2:-66611750 | Msa1263410:CDS |
| CAATACGTCCAAATAAGCGC+AGG | 0.605551 | 8_2:-66611856 | Msa1263410:CDS |
| AACAGATGTTGACATGGGAA+AGG | 0.607086 | 8_2:-66613207 | Msa1263410:CDS |
| CAAAGTTGAATTGAGTAACC+GGG | 0.614622 | 8_2:+66614215 | None:intergenic |
| CAGAAGAAGACGGGAATGAG+TGG | 0.624936 | 8_2:+66611608 | None:intergenic |
| TCCTGATATTCGGATAGTGA+GGG | 0.625925 | 8_2:-66613369 | Msa1263410:CDS |
| GGTTATCGAATATATTATGG+TGG | 0.638956 | 8_2:-66611893 | Msa1263410:CDS |
| CATTCCTTATGTGAATTTGG+GGG | 0.642456 | 8_2:-66612698 | Msa1263410:CDS |
| AGTCATGGCAAATGCATCCG+AGG | 0.654270 | 8_2:+66611949 | None:intergenic |
| GGTTTGTAATGCTGTTGTCG+TGG | 0.662245 | 8_2:-66614238 | Msa1263410:CDS |
| ATGGTGGGATCAATCAACAA+CGG | 0.673611 | 8_2:-66614392 | Msa1263410:CDS |
| TCTCAGATTTGAAATTGACA+TGG | 0.677789 | 8_2:-66612726 | Msa1263410:CDS |
| CAGGTAACAGATGTTGACAT+GGG | 0.679242 | 8_2:-66613212 | Msa1263410:CDS |
| GACCTGAGCTCTGAAGGAGA+AGG | 0.682474 | 8_2:+66612434 | None:intergenic |
| GAAGTGTTTATAGATATCCA+AGG | 0.690681 | 8_2:-66611724 | Msa1263410:CDS |
| AAACTAAACATGTACAGACA+AGG | 0.694433 | 8_2:-66611757 | Msa1263410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATAAGTTAAATTGA+CGG | + | chr8_2:66612542-66612561 | None:intergenic | 10.0% |
| !!! | ACAATTTAATTTATTTACAT+AGG | - | chr8_2:66614320-66614339 | Msa1263410:intron | 10.0% |
| !!! | ATAAGATTTATCAACAATTT+TGG | - | chr8_2:66612066-66612085 | Msa1263410:intron | 15.0% |
| !!! | TAAGATTTATCAACAATTTT+GGG | - | chr8_2:66612067-66612086 | Msa1263410:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr8_2:66612288-66612307 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr8_2:66612391-66612410 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr8_2:66612415-66612434 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr8_2:66612414-66612433 | Msa1263410:CDS | 15.0% |
| !! | TCTAACAATTAAATACAAAT+AGG | + | chr8_2:66612759-66612778 | None:intergenic | 15.0% |
| !!! | ACTTGATTTTTAAGTATAAT+AGG | + | chr8_2:66612854-66612873 | None:intergenic | 15.0% |
| !!! | TAAGCTTTATCTTAAATGAT+TGG | - | chr8_2:66611709-66611728 | Msa1263410:CDS | 20.0% |
| !!! | CATCAAATAAAAAGTACATA+GGG | + | chr8_2:66611916-66611935 | None:intergenic | 20.0% |
| !!! | TCATCAAATAAAAAGTACAT+AGG | + | chr8_2:66611917-66611936 | None:intergenic | 20.0% |
| !! | AAACCTAATATTTAGTTACT+GGG | - | chr8_2:66611936-66611955 | Msa1263410:CDS | 20.0% |
| !! | AAATTTAATTCAACCAATAC+TGG | + | chr8_2:66612027-66612046 | None:intergenic | 20.0% |
| !!! | AAGATTTATCAACAATTTTG+GGG | - | chr8_2:66612068-66612087 | Msa1263410:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr8_2:66612328-66612347 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr8_2:66612405-66612424 | Msa1263410:CDS | 20.0% |
| !!! | CTACTTTGATTTAAAGTAAT+TGG | - | chr8_2:66613525-66613544 | Msa1263410:intron | 20.0% |
| ! | TAGCTGTAAGTATTCTTTAT+CGG | - | chr8_2:66611632-66611651 | Msa1263410:three_prime_UTR | 25.0% |
| !! | CACTACTGTACATAAATTTT+GGG | + | chr8_2:66611816-66611835 | None:intergenic | 25.0% |
| !! | ACACTACTGTACATAAATTT+TGG | + | chr8_2:66611817-66611836 | None:intergenic | 25.0% |
| ! | AATTTATGTACAGTAGTGTA+TGG | - | chr8_2:66611818-66611837 | Msa1263410:CDS | 25.0% |
| ! | GAAACCTAATATTTAGTTAC+TGG | - | chr8_2:66611935-66611954 | Msa1263410:CDS | 25.0% |
| !! | AGATTTATCAACAATTTTGG+GGG | - | chr8_2:66612069-66612088 | Msa1263410:intron | 25.0% |
| ! | TAACTTATTCGTGTATTTGT+TGG | - | chr8_2:66612142-66612161 | Msa1263410:intron | 25.0% |
| ! | AACTTATTCGTGTATTTGTT+GGG | - | chr8_2:66612143-66612162 | Msa1263410:intron | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | + | chr8_2:66612448-66612467 | None:intergenic | 25.0% |
| ! | GTATAATTCCATAGTCAATT+CGG | - | chr8_2:66612569-66612588 | Msa1263410:intron | 25.0% |
| !! | GTTTAATTAGCTTACTACAA+GGG | + | chr8_2:66612722-66612741 | None:intergenic | 25.0% |
| !! | AGTTTAATTAGCTTACTACA+AGG | + | chr8_2:66612723-66612742 | None:intergenic | 25.0% |
| !!! | GATTTTTAAGTATAATAGGC+AGG | + | chr8_2:66612850-66612869 | None:intergenic | 25.0% |
| !! | AATCAAGTTGTTCACTTTAT+TGG | - | chr8_2:66612866-66612885 | Msa1263410:intron | 25.0% |
| ! | TTGTTCACTTTATTGGATTT+GGG | - | chr8_2:66612873-66612892 | Msa1263410:intron | 25.0% |
| !! | CAATTAGGAAAAGCATAATA+GGG | + | chr8_2:66613037-66613056 | None:intergenic | 25.0% |
| !! | TCAATTAGGAAAAGCATAAT+AGG | + | chr8_2:66613038-66613057 | None:intergenic | 25.0% |
| !! | TATTATGCTTTTCCTAATTG+AGG | - | chr8_2:66613037-66613056 | Msa1263410:intron | 25.0% |
| ! | TCCATTTGGAGAATTAAATT+TGG | - | chr8_2:66613202-66613221 | Msa1263410:CDS | 25.0% |
| ! | TCCAAATTTAATTCTCCAAA+TGG | + | chr8_2:66613206-66613225 | None:intergenic | 25.0% |
| ! | TCTCTTTAGTGACTAATTTA+GGG | + | chr8_2:66613733-66613752 | None:intergenic | 25.0% |
| ! | TTCTCTTTAGTGACTAATTT+AGG | + | chr8_2:66613734-66613753 | None:intergenic | 25.0% |
| ! | TGAGATGAATAATTAGCAAA+TGG | + | chr8_2:66613782-66613801 | None:intergenic | 25.0% |
| !! | ATTTGCTAATTATTCATCTC+AGG | - | chr8_2:66613781-66613800 | Msa1263410:intron | 25.0% |
| ! | TCTGGTTATCGAATATATTA+TGG | - | chr8_2:66614104-66614123 | Msa1263410:intron | 25.0% |
| ! | TGAAAAACACTACAATAGAA+TGG | - | chr8_2:66614183-66614202 | Msa1263410:intron | 25.0% |
| ! | AACAATGCTACAAATTACAA+TGG | + | chr8_2:66614361-66614380 | None:intergenic | 25.0% |
| ACAACACTTCTGAATCATTT+GGG | - | chr8_2:66611655-66611674 | Msa1263410:three_prime_UTR | 30.0% | |
| TTAAATGATTGGCGTCATTT+GGG | - | chr8_2:66611720-66611739 | Msa1263410:CDS | 30.0% | |
| TAATGACAATGAGAGAGAAA+TGG | + | chr8_2:66611867-66611886 | None:intergenic | 30.0% | |
| TCACCCAGTAACTAAATATT+AGG | + | chr8_2:66611942-66611961 | None:intergenic | 30.0% | |
| GAAATTTGATCAACCAGTAT+TGG | - | chr8_2:66612011-66612030 | Msa1263410:intron | 30.0% | |
| TAAAACAAGAATGCTAGAAG+TGG | + | chr8_2:66612124-66612143 | None:intergenic | 30.0% | |
| ! | ACTTATTCGTGTATTTGTTG+GGG | - | chr8_2:66612144-66612163 | Msa1263410:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr8_2:66612496-66612515 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr8_2:66612497-66612516 | Msa1263410:intron | 30.0% |
| TCCTAAAATACTACAGTCTT+TGG | - | chr8_2:66612658-66612677 | Msa1263410:CDS | 30.0% | |
| ! | TCCAAAGACTGTAGTATTTT+AGG | + | chr8_2:66612662-66612681 | None:intergenic | 30.0% |
| AATTGTTAGAAGACTTTACC+AGG | - | chr8_2:66612769-66612788 | Msa1263410:CDS | 30.0% | |
| ! | ATGTGTTTCAAGTAAAAGCT+CGG | + | chr8_2:66612827-66612846 | None:intergenic | 30.0% |
| GTTGTTCACTTTATTGGATT+TGG | - | chr8_2:66612872-66612891 | Msa1263410:intron | 30.0% | |
| TTGTGATGTCTAATTATCGA+AGG | + | chr8_2:66612946-66612965 | None:intergenic | 30.0% | |
| !!! | CAAGTATTTTGAAGCTTTCA+TGG | + | chr8_2:66613246-66613265 | None:intergenic | 30.0% |
| CATGAAAGCTTCAAAATACT+TGG | - | chr8_2:66613244-66613263 | Msa1263410:intron | 30.0% | |
| ! | TCTCAGATTTGAAATTGACA+TGG | - | chr8_2:66613274-66613293 | Msa1263410:intron | 30.0% |
| CTCATTCCTTATGTGAATTT+GGG | - | chr8_2:66613300-66613319 | Msa1263410:intron | 30.0% | |
| TCATTCCTTATGTGAATTTG+GGG | - | chr8_2:66613301-66613320 | Msa1263410:intron | 30.0% | |
| ! | AACTAGTTCTTCACTTATAC+TGG | - | chr8_2:66613432-66613451 | Msa1263410:intron | 30.0% |
| CTACAAATATGTTTGTCTTG+CGG | + | chr8_2:66613655-66613674 | None:intergenic | 30.0% | |
| AAGACAAACATATTTGTAGC+TGG | - | chr8_2:66613656-66613675 | Msa1263410:intron | 30.0% | |
| AAACAGGATTTACTGTAACA+AGG | + | chr8_2:66613868-66613887 | None:intergenic | 30.0% | |
| ! | TAGTCTTTTGATGAATGACA+CGG | - | chr8_2:66613980-66613999 | Msa1263410:intron | 30.0% |
| GGTTATCGAATATATTATGG+TGG | - | chr8_2:66614107-66614126 | Msa1263410:intron | 30.0% | |
| TATCGAATATATTATGGTGG+AGG | - | chr8_2:66614110-66614129 | Msa1263410:intron | 30.0% | |
| AAACTAAACATGTACAGACA+AGG | - | chr8_2:66614243-66614262 | Msa1263410:intron | 30.0% | |
| ! | GAAGTGTTTATAGATATCCA+AGG | - | chr8_2:66614276-66614295 | Msa1263410:intron | 30.0% |
| GGCTAAATTGATTAATCCAT+TGG | - | chr8_2:66614414-66614433 | Msa1263410:CDS | 30.0% | |
| !!! | TACATTTTGGTTACCGCAAA+TGG | - | chr8_2:66611589-66611608 | Msa1263410:three_prime_UTR | 35.0% |
| GACAACACTTCTGAATCATT+TGG | - | chr8_2:66611654-66611673 | Msa1263410:three_prime_UTR | 35.0% | |
| CTTAAATGATTGGCGTCATT+TGG | - | chr8_2:66611719-66611738 | Msa1263410:CDS | 35.0% | |
| CAAAGTTGAATTGAGTAACC+GGG | + | chr8_2:66611788-66611807 | None:intergenic | 35.0% | |
| CCAAAGTTGAATTGAGTAAC+CGG | + | chr8_2:66611789-66611808 | None:intergenic | 35.0% | |
| GTGGAGAAATTGATTACTAG+CGG | - | chr8_2:66611969-66611988 | Msa1263410:CDS | 35.0% | |
| !! | TTATCAACAATTTTGGGGGA+TGG | - | chr8_2:66612073-66612092 | Msa1263410:intron | 35.0% |
| !! | TATCAACAATTTTGGGGGAT+GGG | - | chr8_2:66612074-66612093 | Msa1263410:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr8_2:66612262-66612281 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr8_2:66612362-66612381 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr8_2:66612366-66612385 | None:intergenic | 35.0% |
| ACAACTTGACTCCTGATATT+CGG | - | chr8_2:66612621-66612640 | Msa1263410:CDS | 35.0% | |
| AATACTACAGTCTTTGGACT+TGG | - | chr8_2:66612664-66612683 | Msa1263410:CDS | 35.0% | |
| ! | ATTAGCTTACTACAAGGGAA+GGG | + | chr8_2:66612717-66612736 | None:intergenic | 35.0% |
| ! | AATTAGCTTACTACAAGGGA+AGG | + | chr8_2:66612718-66612737 | None:intergenic | 35.0% |
| ATATTTACCTGCAGCTCAAA+TGG | + | chr8_2:66612923-66612942 | None:intergenic | 35.0% | |
| !! | TAATAACAGTAGAGCATTGC+CGG | + | chr8_2:66612997-66613016 | None:intergenic | 35.0% |
| TCTAGATGAAGTCCTCAATT+AGG | + | chr8_2:66613052-66613071 | None:intergenic | 35.0% | |
| ! | TATTCTGGGAACAAATTGCA+GGG | + | chr8_2:66613102-66613121 | None:intergenic | 35.0% |
| GCTCATTCCTTATGTGAATT+TGG | - | chr8_2:66613299-66613318 | Msa1263410:intron | 35.0% | |
| CATTCCTTATGTGAATTTGG+GGG | - | chr8_2:66613302-66613321 | Msa1263410:intron | 35.0% | |
| !! | GTAGCTGGTTCTAATTTGTA+TGG | - | chr8_2:66613671-66613690 | Msa1263410:intron | 35.0% |
| AGAGAACTTACTTTCTTCAG+CGG | - | chr8_2:66613748-66613767 | Msa1263410:intron | 35.0% | |
| CTGTAACAAGGAGCTTAATT+AGG | + | chr8_2:66613856-66613875 | None:intergenic | 35.0% | |
| ! | ACATGAAAAGTGCACAAAAC+AGG | + | chr8_2:66613884-66613903 | None:intergenic | 35.0% |
| TGCTCCTCATATTAAACGTT+TGG | - | chr8_2:66613922-66613941 | Msa1263410:intron | 35.0% | |
| AACGCCAAACGTTTAATATG+AGG | + | chr8_2:66613929-66613948 | None:intergenic | 35.0% | |
| TTAAACGTTTGGCGTTATTG+AGG | - | chr8_2:66613933-66613952 | Msa1263410:intron | 35.0% | |
| ! | TATTGAGGACCGGATTATTT+TGG | - | chr8_2:66613948-66613967 | Msa1263410:intron | 35.0% |
| !! | GTGTTTTTGAACAGAGAATG+AGG | - | chr8_2:66614207-66614226 | Msa1263410:CDS | 35.0% |
| CTATAAACACTTCTTGCCTT+AGG | + | chr8_2:66614269-66614288 | None:intergenic | 35.0% | |
| CACATACATTCTTTACACCT+TGG | + | chr8_2:66614296-66614315 | None:intergenic | 35.0% | |
| TCAATTTAGCCAGAAGAAGA+CGG | + | chr8_2:66614405-66614424 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTTACCGCAAATGG+TGG | - | chr8_2:66611592-66611611 | Msa1263410:three_prime_UTR | 40.0% |
| !! | TTTTGGTTACCGCAAATGGT+GGG | - | chr8_2:66611593-66611612 | Msa1263410:three_prime_UTR | 40.0% |
| TTGATTGATCCCACCATTTG+CGG | + | chr8_2:66611605-66611624 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATCAATCAACAA+CGG | - | chr8_2:66611608-66611627 | Msa1263410:three_prime_UTR | 40.0% |
| CCGGTTACTCAATTCAACTT+TGG | - | chr8_2:66611786-66611805 | Msa1263410:CDS | 40.0% | |
| GTAGTGTATGGAGAGATACA+AGG | - | chr8_2:66611830-66611849 | Msa1263410:CDS | 40.0% | |
| ! | CGTGTATTTGTTGGGGAAAA+TGG | - | chr8_2:66612151-66612170 | Msa1263410:intron | 40.0% |
| AAAGCCATGAACTACAGATG+TGG | + | chr8_2:66612226-66612245 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8_2:66612501-66612520 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr8_2:66612363-66612382 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8_2:66612501-66612520 | Msa1263410:intron | 40.0% |
| AGATGTCTCCGAATTGACTA+TGG | + | chr8_2:66612580-66612599 | None:intergenic | 40.0% | |
| TCAATTCGGAGACATCTATC+AGG | - | chr8_2:66612583-66612602 | Msa1263410:intron | 40.0% | |
| TCCTGATATTCGGATAGTGA+GGG | - | chr8_2:66612631-66612650 | Msa1263410:CDS | 40.0% | |
| CAGGTAACAGATGTTGACAT+GGG | - | chr8_2:66612788-66612807 | Msa1263410:CDS | 40.0% | |
| AACAGATGTTGACATGGGAA+AGG | - | chr8_2:66612793-66612812 | Msa1263410:CDS | 40.0% | |
| ! | TTTCAAGTAAAAGCTCGGCT+TGG | + | chr8_2:66612822-66612841 | None:intergenic | 40.0% |
| TATTGGATTTGGGAATCGCT+TGG | - | chr8_2:66612883-66612902 | Msa1263410:intron | 40.0% | |
| CATGATCTGATTCTTTAGCC+CGG | - | chr8_2:66612975-66612994 | Msa1263410:intron | 40.0% | |
| !! | AATAACAGTAGAGCATTGCC+GGG | + | chr8_2:66612996-66613015 | None:intergenic | 40.0% |
| ! | GTATTCTGGGAACAAATTGC+AGG | + | chr8_2:66613103-66613122 | None:intergenic | 40.0% |
| CCAGCAGTTTCTTGTATTCT+GGG | + | chr8_2:66613116-66613135 | None:intergenic | 40.0% | |
| ACCAGCAGTTTCTTGTATTC+TGG | + | chr8_2:66613117-66613136 | None:intergenic | 40.0% | |
| ! | GTCTTATTGGACCATTGGAT+CGG | - | chr8_2:66613168-66613187 | Msa1263410:CDS | 40.0% |
| CGAAGAAGAGAGGAAAGAAT+TGG | - | chr8_2:66613328-66613347 | Msa1263410:CDS | 40.0% | |
| ! | TTTTTCATCAATGCCAGTGC+AGG | + | chr8_2:66613377-66613396 | None:intergenic | 40.0% |
| ATGGATTCTTCAGGTGTCAA+TGG | + | chr8_2:66613605-66613624 | None:intergenic | 40.0% | |
| !! | GCTGGTTCTAATTTGTATGG+AGG | - | chr8_2:66613674-66613693 | Msa1263410:intron | 40.0% |
| ! | GACTAATTTAGGGTACAAGC+TGG | + | chr8_2:66613723-66613742 | None:intergenic | 40.0% |
| ACAGCAGCACCAAAATAATC+CGG | + | chr8_2:66613960-66613979 | None:intergenic | 40.0% | |
| TCTATTGTAGTTAGCAGCAC+TGG | - | chr8_2:66614010-66614029 | Msa1263410:intron | 40.0% | |
| AGGAAGTCAGCTTTCATCTT+TGG | - | chr8_2:66614079-66614098 | Msa1263410:intron | 40.0% | |
| CGCTTATTTGGACGTATTGT+TGG | + | chr8_2:66614143-66614162 | None:intergenic | 40.0% | |
| GGTGTAAAGAATGTATGTGC+AGG | - | chr8_2:66614297-66614316 | Msa1263410:intron | 40.0% | |
| CAATTTAGCCAGAAGAAGAC+GGG | + | chr8_2:66614404-66614423 | None:intergenic | 40.0% | |
| TGGTGGGATCAATCAACAAC+GGG | - | chr8_2:66611609-66611628 | Msa1263410:three_prime_UTR | 45.0% | |
| GGTTTGTAATGCTGTTGTCG+TGG | - | chr8_2:66611762-66611781 | Msa1263410:CDS | 45.0% | |
| GTTACTGGGTGAATGATCAG+TGG | - | chr8_2:66611950-66611969 | Msa1263410:CDS | 45.0% | |
| ! | CTACAGATGTGGCATCGAAA+TGG | + | chr8_2:66612215-66612234 | None:intergenic | 45.0% |
| GATGCCACATCTGTAGTTCA+TGG | - | chr8_2:66612219-66612238 | Msa1263410:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8_2:66612500-66612519 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8_2:66612500-66612519 | Msa1263410:intron | 45.0% |
| ATTCGGAGACATCTATCAGG+AGG | - | chr8_2:66612586-66612605 | Msa1263410:intron | 45.0% | |
| CTCCTGATATTCGGATAGTG+AGG | - | chr8_2:66612630-66612649 | Msa1263410:CDS | 45.0% | |
| TCCCTCACTATCCGAATATC+AGG | + | chr8_2:66612635-66612654 | None:intergenic | 45.0% | |
| ACTACAGTCTTTGGACTTGG+AGG | - | chr8_2:66612667-66612686 | Msa1263410:CDS | 45.0% | |
| TCTTTGGACTTGGAGGCAAT+CGG | - | chr8_2:66612674-66612693 | Msa1263410:CDS | 45.0% | |
| CCATGTCAACATCTGTTACC+TGG | + | chr8_2:66612790-66612809 | None:intergenic | 45.0% | |
| CCAGGTAACAGATGTTGACA+TGG | - | chr8_2:66612787-66612806 | Msa1263410:CDS | 45.0% | |
| AGATGTTGACATGGGAAAGG+AGG | - | chr8_2:66612796-66612815 | Msa1263410:CDS | 45.0% | |
| TCCAATACCATTTGAGCTGC+AGG | - | chr8_2:66612913-66612932 | Msa1263410:CDS | 45.0% | |
| ACCTGCAGCTCAAATGGTAT+TGG | + | chr8_2:66612917-66612936 | None:intergenic | 45.0% | |
| CCCAGAATACAAGAAACTGC+TGG | - | chr8_2:66613113-66613132 | Msa1263410:CDS | 45.0% | |
| !! | CTGCTGGTTTGCTTCTTAAG+AGG | - | chr8_2:66613129-66613148 | Msa1263410:CDS | 45.0% |
| TTGCTTCTTAAGAGGTTGCG+CGG | - | chr8_2:66613137-66613156 | Msa1263410:CDS | 45.0% | |
| !! | TGCAGGTCTTATTGGACCAT+TGG | - | chr8_2:66613163-66613182 | Msa1263410:CDS | 45.0% |
| TCCTTATGTGAATTTGGGGG+AGG | - | chr8_2:66613305-66613324 | Msa1263410:intron | 45.0% | |
| ! | TGAGATCCATTTTCCTGCAC+TGG | - | chr8_2:66613361-66613380 | Msa1263410:CDS | 45.0% |
| TCAATGCCAGTGCAGGAAAA+TGG | + | chr8_2:66613370-66613389 | None:intergenic | 45.0% | |
| ! | AGCATGAGGATGGATTCTTC+AGG | + | chr8_2:66613614-66613633 | None:intergenic | 45.0% |
| ATTTGTATGGAGGTCGCTCA+CGG | - | chr8_2:66613684-66613703 | Msa1263410:intron | 45.0% | |
| ! | TTAGCAGCACTGGACTTCAT+AGG | - | chr8_2:66614020-66614039 | Msa1263410:intron | 45.0% |
| ! | GCATTTGCCATGACTGATTC+AGG | - | chr8_2:66614059-66614078 | Msa1263410:intron | 45.0% |
| CTGACTTCCTGAATCAGTCA+TGG | + | chr8_2:66614069-66614088 | None:intergenic | 45.0% | |
| !! | CAGCTTTCATCTTTGGTGTC+TGG | - | chr8_2:66614086-66614105 | Msa1263410:intron | 45.0% |
| CAATACGTCCAAATAAGCGC+AGG | - | chr8_2:66614144-66614163 | Msa1263410:intron | 45.0% | |
| ACATGTACAGACAAGGCCTA+AGG | - | chr8_2:66614250-66614269 | Msa1263410:intron | 45.0% | |
| GGCTGATTGTGAGTTGCAAC+AGG | - | chr8_2:66611741-66611760 | Msa1263410:CDS | 50.0% | |
| TGCTTCTTAAGAGGTTGCGC+GGG | - | chr8_2:66613138-66613157 | Msa1263410:CDS | 50.0% | |
| CCAACAAGATGCCGATCCAA+TGG | + | chr8_2:66613182-66613201 | None:intergenic | 50.0% | |
| CCATTGGATCGGCATCTTGT+TGG | - | chr8_2:66613179-66613198 | Msa1263410:CDS | 50.0% | |
| CGGCATCTTGTTGGTCCATT+TGG | - | chr8_2:66613188-66613207 | Msa1263410:CDS | 50.0% | |
| GCCTCCCCCAAATTCACATA+AGG | + | chr8_2:66613309-66613328 | None:intergenic | 50.0% | |
| TACCTTCTCCTTCAGAGCTC+AGG | - | chr8_2:66613564-66613583 | Msa1263410:intron | 50.0% | |
| CTTCAGAGCTCAGGTCTGAA+GGG | - | chr8_2:66613573-66613592 | Msa1263410:intron | 50.0% | |
| AAGAGCAGCAAGCATGAGGA+TGG | + | chr8_2:66613624-66613643 | None:intergenic | 50.0% | |
| ! | ATCCTCATGCTTGCTGCTCT+TGG | - | chr8_2:66613623-66613642 | Msa1263410:intron | 50.0% |
| CGTTTGGCGTTATTGAGGAC+CGG | - | chr8_2:66613938-66613957 | Msa1263410:intron | 50.0% | |
| AGTCATGGCAAATGCATCCG+AGG | + | chr8_2:66614054-66614073 | None:intergenic | 50.0% | |
| CTAGCAAGCCTGCGCTTATT+TGG | + | chr8_2:66614155-66614174 | None:intergenic | 50.0% | |
| CAGAAGAAGACGGGAATGAG+TGG | + | chr8_2:66614395-66614414 | None:intergenic | 50.0% | |
| CACTCATTCCCGTCTTCTTC+TGG | - | chr8_2:66614393-66614412 | Msa1263410:CDS | 50.0% | |
| GTAATGCTGTTGTCGTGGCC+CGG | - | chr8_2:66611767-66611786 | Msa1263410:CDS | 55.0% | |
| !! | GACCTGAGCTCTGAAGGAGA+AGG | + | chr8_2:66613569-66613588 | None:intergenic | 55.0% |
| ! | CCTTCAGACCTGAGCTCTGA+AGG | + | chr8_2:66613575-66613594 | None:intergenic | 55.0% |
| CCTTCAGAGCTCAGGTCTGA+AGG | - | chr8_2:66613572-66613591 | Msa1263410:intron | 55.0% | |
| AGCCAAGAGCAGCAAGCATG+AGG | + | chr8_2:66613628-66613647 | None:intergenic | 55.0% | |
| CTTCATAGGCTGTGCTGCCT+CGG | - | chr8_2:66614034-66614053 | Msa1263410:intron | 55.0% | |
| ! | CGCGGGCATGCAGGTCTTAT+TGG | - | chr8_2:66613155-66613174 | Msa1263410:CDS | 60.0% |
| TTGGGGGAGGCGAAGAAGAG+AGG | - | chr8_2:66613318-66613337 | Msa1263410:intron | 60.0% | |
| GTATGGAGGTCGCTCACGGT+TGG | - | chr8_2:66613688-66613707 | Msa1263410:intron | 60.0% | |
| AAGAGGTTGCGCGGGCATGC+AGG | - | chr8_2:66613146-66613165 | Msa1263410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 66611577 | 66614445 | 66611577 | ID=Msa1263410;Name=Msa1263410 |
| chr8_2 | mRNA | 66611577 | 66614445 | 66611577 | ID=Msa1263410-mRNA-1;Parent=Msa1263410;Name=Msa1263410-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.71|0.37|1|0.57|0.37|8|117|408 |
| chr8_2 | exon | 66611577 | 66612002 | 66611577 | ID=Msa1263410-mRNA-1:exon:21801;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66612220 | 66612460 | 66612220 | ID=Msa1263410-mRNA-1:exon:21800;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66612617 | 66612854 | 66612617 | ID=Msa1263410-mRNA-1:exon:21799;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66612888 | 66612951 | 66612888 | ID=Msa1263410-mRNA-1:exon:21798;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66613088 | 66613231 | 66613088 | ID=Msa1263410-mRNA-1:exon:21797;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66613319 | 66613417 | 66613319 | ID=Msa1263410-mRNA-1:exon:21796;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66614188 | 66614259 | 66614188 | ID=Msa1263410-mRNA-1:exon:21795;Parent=Msa1263410-mRNA-1 |
| chr8_2 | exon | 66614386 | 66614445 | 66614386 | ID=Msa1263410-mRNA-1:exon:21794;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66614386 | 66614445 | 66614386 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66614188 | 66614259 | 66614188 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66613319 | 66613417 | 66613319 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66613088 | 66613231 | 66613088 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66612888 | 66612951 | 66612888 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66612617 | 66612854 | 66612617 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66612220 | 66612460 | 66612220 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | CDS | 66611694 | 66612002 | 66611694 | ID=Msa1263410-mRNA-1:cds;Parent=Msa1263410-mRNA-1 |
| chr8_2 | three_prime_UTR | 66611577 | 66611693 | 66611577 | ID=Msa1263410-mRNA-1:three_prime_utr;Parent=Msa1263410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
